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Conserved domains on  [gi|1381990006|ref|WP_107866651|]
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ANTAR domain-containing response regulator [Agitococcus lubricus]

Protein Classification

ANTAR domain-containing response regulator( domain architecture ID 11467116)

response regulator with a signal receiver (REC) domain and RNA binding antiterminator (ANTAR) domain involved in transcriptional antitermination, similar to Mycobacterium tuberculosis transcriptional regulatory protein pdtaR that is a member of the two-component regulatory system pdtaR/pdtaS

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
AmiR COG3707
Two-component response regulator, AmiR/NasT family, consists of REC and RNA-binding ...
 1-190 2.16e-57

Two-component response regulator, AmiR/NasT family, consists of REC and RNA-binding antiterminator (ANTAR) domains [Signal transduction mechanisms, Transcription];


:

Pssm-ID: 442921 [Multi-domain]  Cd Length: 194  Bit Score: 179.00  E-value: 2.16e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381990006   1 MLRVLLVNDTNKQVGRLRAALMQAGCDVVEEVTSALMIPKKVADLKADVVIIDTDSPSRDVLEQICVVSQDAPKPIVMVS 80
Cdd:COG3707     3 GLRVLVVDDEPLRRADLREGLREAGYEVVAEAADGEDAVELVRELKPDLVIVDIDMPDRDGLEAARQISEERPAPVILLT 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381990006  81 EDTQPAAIKAAIKAGVSAYVVEDIDPQRLSAVLDIAQARFEQDQALMQQIRQAESKLNERKVVERAKGLLMQLRNMTEAE 160
Cdd:COG3707    83 AYSDPELIERALEAGVSAYLVKPLDPEDLLPALELALARFRELRALRRELAKLREALEERKLIERAKGILMERRGLSEDE 162

                         170       180       190
                  ....*....|....*....|....*....|
gi 1381990006 161 AYHAMRKMAMDRNIRIIDVAQKLLSMNDLL 190
Cdd:COG3707   163 AYRLLRKQAMDRRVKLAEVAEAILAAAELL 192
 
Name Accession Description Interval E-value
AmiR COG3707
Two-component response regulator, AmiR/NasT family, consists of REC and RNA-binding ...
 1-190 2.16e-57

Two-component response regulator, AmiR/NasT family, consists of REC and RNA-binding antiterminator (ANTAR) domains [Signal transduction mechanisms, Transcription];


Pssm-ID: 442921 [Multi-domain]  Cd Length: 194  Bit Score: 179.00  E-value: 2.16e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381990006   1 MLRVLLVNDTNKQVGRLRAALMQAGCDVVEEVTSALMIPKKVADLKADVVIIDTDSPSRDVLEQICVVSQDAPKPIVMVS 80
Cdd:COG3707     3 GLRVLVVDDEPLRRADLREGLREAGYEVVAEAADGEDAVELVRELKPDLVIVDIDMPDRDGLEAARQISEERPAPVILLT 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381990006  81 EDTQPAAIKAAIKAGVSAYVVEDIDPQRLSAVLDIAQARFEQDQALMQQIRQAESKLNERKVVERAKGLLMQLRNMTEAE 160
Cdd:COG3707    83 AYSDPELIERALEAGVSAYLVKPLDPEDLLPALELALARFRELRALRRELAKLREALEERKLIERAKGILMERRGLSEDE 162

                         170       180       190
                  ....*....|....*....|....*....|
gi 1381990006 161 AYHAMRKMAMDRNIRIIDVAQKLLSMNDLL 190
Cdd:COG3707   163 AYRLLRKQAMDRRVKLAEVAEAILAAAELL 192
ANTAR pfam03861
ANTAR domain; ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding ...
 136-181 3.17e-15

ANTAR domain; ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins. The majority of the domain consists of a coiled-coil.


Pssm-ID: 427550 [Multi-domain]  Cd Length: 46  Bit Score: 66.20  E-value: 3.17e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1381990006 136 KLNERKVVERAKGLLMQLRNMTEAEAYHAMRKMAMDRNIRIIDVAQ 181
Cdd:pfam03861   1 ALESRKVIEQAKGILMERLGLSEDEAFRLLRKLSMDRNVKLREVAE 46
ANTAR smart01012
ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found ...
 130-184 3.11e-14

ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins; The majority of the domain consists of a coiled-coil.


Pssm-ID: 198080 [Multi-domain]  Cd Length: 55  Bit Score: 64.04  E-value: 3.11e-14
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1381990006  130 IRQAESKLNERKVVERAKGLLMQLRNMTEAEAYHAMRKMAMDRNIRIIDVAQKLL 184
Cdd:smart01012   1 LEQLREALESRKVIEQAKGILMERRGLSEEEAFELLRKLAMDRNVKLRDVAEAIV 55
REC_PdtaR-like cd19932
phosphoacceptor receiver (REC) domain of PdtaR and similar proteins; This subfamily includes ...
 2-119 1.10e-05

phosphoacceptor receiver (REC) domain of PdtaR and similar proteins; This subfamily includes Mycobacterium tuberculosis PdtaR, also called Rv1626, and similar proteins containing a REC domain and an ANTAR (AmiR and NasR transcription antitermination regulators) RNA-binding output domain. PdtaR is a response regulator that acts at the level of transcriptional antitermination and is a member of the PdtaR/PdtaS two-component regulatory system. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.


Pssm-ID: 381159 [Multi-domain]  Cd Length: 118  Bit Score: 42.79  E-value: 1.10e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381990006   2 LRVLLVNDTNKQVGRLRAALMQAGCDVVEEVTSALMIPKKVADLKADVVIIDTDSPSRDVLEQICVVSQDAPKPIVMVSE 81
Cdd:cd19932     1 VRVLIAEDEALIRMDLREMLEEAGYEVVGEASDGEEAVELAKKHKPDLVIMDVKMPRLDGIEAAKIITSENIAPIVLLTA 80

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1381990006  82 DTQPAAIKAAIKAGVSAYVVEDIDPQRLSAVLDIAQAR 119
Cdd:cd19932    81 YSQQDLVERAKEAGAMAYLVKPFSESDLIPAIEMAIAR 118
PRK10610 PRK10610
chemotaxis protein CheY;
2-102 6.90e-04

chemotaxis protein CheY;


Pssm-ID: 170568 [Multi-domain]  Cd Length: 129  Bit Score: 38.03  E-value: 6.90e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381990006   2 LRVLLVNDTNKQVGRLRAALMQAGCDVVEEVTSALMIPKKVADLKADVVIIDTDSPSRDVLEQICVVSQD---APKPIVM 78
Cdd:PRK10610    6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGFGFVISDWNMPNMDGLELLKTIRADgamSALPVLM 85

                          90       100
                  ....*....|....*....|....
gi 1381990006  79 VSEDTQPAAIKAAIKAGVSAYVVE 102
Cdd:PRK10610   86 VTAEAKKENIIAAAQAGASGYVVK 109
 
Name Accession Description Interval E-value
AmiR COG3707
Two-component response regulator, AmiR/NasT family, consists of REC and RNA-binding ...
 1-190 2.16e-57

Two-component response regulator, AmiR/NasT family, consists of REC and RNA-binding antiterminator (ANTAR) domains [Signal transduction mechanisms, Transcription];


Pssm-ID: 442921 [Multi-domain]  Cd Length: 194  Bit Score: 179.00  E-value: 2.16e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381990006   1 MLRVLLVNDTNKQVGRLRAALMQAGCDVVEEVTSALMIPKKVADLKADVVIIDTDSPSRDVLEQICVVSQDAPKPIVMVS 80
Cdd:COG3707     3 GLRVLVVDDEPLRRADLREGLREAGYEVVAEAADGEDAVELVRELKPDLVIVDIDMPDRDGLEAARQISEERPAPVILLT 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381990006  81 EDTQPAAIKAAIKAGVSAYVVEDIDPQRLSAVLDIAQARFEQDQALMQQIRQAESKLNERKVVERAKGLLMQLRNMTEAE 160
Cdd:COG3707    83 AYSDPELIERALEAGVSAYLVKPLDPEDLLPALELALARFRELRALRRELAKLREALEERKLIERAKGILMERRGLSEDE 162

                         170       180       190
                  ....*....|....*....|....*....|
gi 1381990006 161 AYHAMRKMAMDRNIRIIDVAQKLLSMNDLL 190
Cdd:COG3707   163 AYRLLRKQAMDRRVKLAEVAEAILAAAELL 192
ANTAR pfam03861
ANTAR domain; ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding ...
 136-181 3.17e-15

ANTAR domain; ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins. The majority of the domain consists of a coiled-coil.


Pssm-ID: 427550 [Multi-domain]  Cd Length: 46  Bit Score: 66.20  E-value: 3.17e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1381990006 136 KLNERKVVERAKGLLMQLRNMTEAEAYHAMRKMAMDRNIRIIDVAQ 181
Cdd:pfam03861   1 ALESRKVIEQAKGILMERLGLSEDEAFRLLRKLSMDRNVKLREVAE 46
ANTAR smart01012
ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found ...
 130-184 3.11e-14

ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins; The majority of the domain consists of a coiled-coil.


Pssm-ID: 198080 [Multi-domain]  Cd Length: 55  Bit Score: 64.04  E-value: 3.11e-14
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1381990006  130 IRQAESKLNERKVVERAKGLLMQLRNMTEAEAYHAMRKMAMDRNIRIIDVAQKLL 184
Cdd:smart01012   1 LEQLREALESRKVIEQAKGILMERRGLSEEEAFELLRKLAMDRNVKLRDVAEAIV 55
PleD COG3706
Two-component response regulator, PleD family, consists of two REC domains and a diguanylate ...
 1-142 4.65e-08

Two-component response regulator, PleD family, consists of two REC domains and a diguanylate cyclase (GGDEF) domain [Signal transduction mechanisms, Transcription];


Pssm-ID: 442920 [Multi-domain]  Cd Length: 179  Bit Score: 50.68  E-value: 4.65e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381990006   1 MLRVLLVNDTNKQVGRLRAALMQAGCDVVEeVTSALMIPKKVADLKADVVIIDTDSPSRD---VLEQICVVSQDAPKPIV 77
Cdd:COG3706     1 PARILVVDDDPTNRKLLRRLLEAAGYEVVE-AADGEEALELLQEHRPDLILLDLEMPDMDgleLCRRLRADPRTADIPII 79

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1381990006  78 MVSEDTQPAAIKAAIKAGVSAYVVEDIDPQRLSAVLDIAqARF--------------EQDQALMQQIRQAESKLNERKV 142
Cdd:COG3706    80 FLTALDDEEDRARALEAGADDYLTKPFDPEELLARVDLV-ARYggeefaillpgtdlEGALAVAERIREAVAELPSLRV 157
AtoC COG2204
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, ...
 1-137 9.00e-07

DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains [Signal transduction mechanisms];


Pssm-ID: 441806 [Multi-domain]  Cd Length: 418  Bit Score: 48.04  E-value: 9.00e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381990006   1 MLRVLLVnDTNKQVGR-LRAALMQAGCDVVEeVTSALMIPKKVADLKADVVIIDTDSPSRDVLEQICVVSQDAPK-PIVM 78
Cdd:COG2204     2 MARILVV-DDDPDIRRlLKELLERAGYEVET-AASGEEALALLREEPPDLVLLDLRMPGMDGLELLRELRALDPDlPVIL 79

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1381990006  79 VSEDTQPAAIKAAIKAGVSAYVVEDIDPQRLSAVLDIAQARFEQDQAL------------MQQIRQAESKL 137
Cdd:COG2204    80 LTGYGDVETAVEAIKAGAFDYLTKPFDLEELLAAVERALERRRLRRENaedsgligrspaMQEVRRLIEKV 150
REC_PdtaR-like cd19932
phosphoacceptor receiver (REC) domain of PdtaR and similar proteins; This subfamily includes ...
 2-119 1.10e-05

phosphoacceptor receiver (REC) domain of PdtaR and similar proteins; This subfamily includes Mycobacterium tuberculosis PdtaR, also called Rv1626, and similar proteins containing a REC domain and an ANTAR (AmiR and NasR transcription antitermination regulators) RNA-binding output domain. PdtaR is a response regulator that acts at the level of transcriptional antitermination and is a member of the PdtaR/PdtaS two-component regulatory system. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.


Pssm-ID: 381159 [Multi-domain]  Cd Length: 118  Bit Score: 42.79  E-value: 1.10e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381990006   2 LRVLLVNDTNKQVGRLRAALMQAGCDVVEEVTSALMIPKKVADLKADVVIIDTDSPSRDVLEQICVVSQDAPKPIVMVSE 81
Cdd:cd19932     1 VRVLIAEDEALIRMDLREMLEEAGYEVVGEASDGEEAVELAKKHKPDLVIMDVKMPRLDGIEAAKIITSENIAPIVLLTA 80

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1381990006  82 DTQPAAIKAAIKAGVSAYVVEDIDPQRLSAVLDIAQAR 119
Cdd:cd19932    81 YSQQDLVERAKEAGAMAYLVKPFSESDLIPAIEMAIAR 118
RpfG COG3437
Response regulator c-di-GMP phosphodiesterase, RpfG family, contains REC and HD-GYP domains ...
 1-132 3.01e-05

Response regulator c-di-GMP phosphodiesterase, RpfG family, contains REC and HD-GYP domains [Signal transduction mechanisms];


Pssm-ID: 442663 [Multi-domain]  Cd Length: 224  Bit Score: 43.23  E-value: 3.01e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381990006   1 MLRVLLVNDTNKQVGRLRAALMQAGCDVVEeVTSALMIPKKVADLKADVVIIDTDSPSRD---VLEQICVVSQDAPKPIV 77
Cdd:COG3437     6 APTVLIVDDDPENLELLRQLLRTLGYDVVT-AESGEEALELLLEAPPDLILLDVRMPGMDgfeLLRLLRADPSTRDIPVI 84

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1381990006  78 MVSEDTQPAAIKAAIKAGVSAYVVEDIDPQRLSAVLDIAQARFEQDQALMQQIRQ 132
Cdd:COG3437    85 FLTALADPEDRERALEAGADDYLTKPFDPEELLARVRNALELRRLQRELDDLVLY 139
REC_CheY4-like cd17562
phosphoacceptor receiver (REC) domain of chemotaxis response regulator CheY4 and similar CheY ...
 3-113 2.20e-04

phosphoacceptor receiver (REC) domain of chemotaxis response regulator CheY4 and similar CheY family proteins; CheY family chemotaxis response regulators (RRs) comprise about 17% of bacterial RRs and almost half of all RRs in archaea. This subfamily contains Vibrio cholerae CheY4 and similar CheY family RRs. CheY proteins control bacterial motility and participate in signaling phosphorelays and in protein-protein interactions. CheY RRs contain only the REC domain with no output/effector domain. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.


Pssm-ID: 381110 [Multi-domain]  Cd Length: 118  Bit Score: 39.21  E-value: 2.20e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381990006   3 RVLLVNDTNKQVGRLRAALMQAGCDVVEEV--TSALmipKKVADLKADVVIIDTDSPSRDVLEQICVV---SQDAPKPIV 77
Cdd:cd17562     2 KILAVDDSASIRQMVSFTLRGAGYEVVEAAdgRDAL---SKAQSKKFDLIITDQNMPNMDGIELIKELrklPAYKFTPIL 78

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1381990006  78 MVSEDTQPAAIKAAIKAGVSAYVVEDIDPQRLSAVL 113
Cdd:cd17562    79 MLTTESSDEKKQEGKAAGATGWLVKPFDPEQLLEVV 114
PRK10610 PRK10610
chemotaxis protein CheY;
2-102 6.90e-04

chemotaxis protein CheY;


Pssm-ID: 170568 [Multi-domain]  Cd Length: 129  Bit Score: 38.03  E-value: 6.90e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381990006   2 LRVLLVNDTNKQVGRLRAALMQAGCDVVEEVTSALMIPKKVADLKADVVIIDTDSPSRDVLEQICVVSQD---APKPIVM 78
Cdd:PRK10610    6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGFGFVISDWNMPNMDGLELLKTIRADgamSALPVLM 85

                          90       100
                  ....*....|....*....|....
gi 1381990006  79 VSEDTQPAAIKAAIKAGVSAYVVE 102
Cdd:PRK10610   86 VTAEAKKENIIAAAQAGASGYVVK 109
REC cd00156
phosphoacceptor receiver (REC) domain of response regulators (RRs) and pseudo response ...
 5-101 1.29e-03

phosphoacceptor receiver (REC) domain of response regulators (RRs) and pseudo response regulators (PRRs); Two-component systems (TCSs) involving a sensor and a response regulator are used by bacteria to adapt to changing environments. Processes regulated by two-component systems in bacteria include sporulation, pathogenicity, virulence, chemotaxis, and membrane transport. Response regulators (RRs) share the common phosphoacceptor REC domain and different effector/output domains such as DNA, RNA, ligand-binding, protein-binding, or enzymatic domains. Response regulators regulate transcription, post-transcription or post-translation, or have functions such as methylesterases, adenylate or diguanylate cyclase, c-di-GMP-specific phosphodiesterases, histidine kinases, serine/threonine protein kinases, and protein phosphatases, depending on their output domains. The function of some output domains are still unknown. TCSs are found in all three domains of life - bacteria, archaea, and eukaryotes, however, the presence and abundance of particular RRs vary between the lineages. Archaea encode very few RRs with DNA-binding output domains; most are stand-alone REC domains. Among eukaryotes, TCSs are found primarily in protozoa, fungi, algae, and green plants. REC domains function as phosphorylation-mediated switches within RRs, but some also transfer phosphoryl groups in multistep phosphorelays.


Pssm-ID: 381085 [Multi-domain]  Cd Length: 99  Bit Score: 36.82  E-value: 1.29e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381990006   5 LLVNDTNKQVGRLRAALMQAGCDVVEeVTSALMIPKKVADLKADVVIIDTDSPSRDVLEQICVVSQDAPK-PIVMVSEDT 83
Cdd:cd00156     1 LIVDDDPAIRELLKSLLEREGYEVDT-AADGEEALELLREERPDLVLLDLMMPGMDGLELLRKLRELPPDiPVIVLTAKA 79

                          90
                  ....*....|....*...
gi 1381990006  84 QPAAIKAAIKAGVSAYVV 101
Cdd:cd00156    80 DEEDAVRALELGADDYLV 97
CitB COG4565
DNA-binding response regulator DpiB of citrate/malate metabolism [Transcription, Signal ...
 1-122 3.31e-03

DNA-binding response regulator DpiB of citrate/malate metabolism [Transcription, Signal transduction mechanisms];


Pssm-ID: 443622 [Multi-domain]  Cd Length: 138  Bit Score: 36.10  E-value: 3.31e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381990006   1 MLRVLLVNDTNKQVGRLRAALMQ-AGCDVVEEVTSALMIPKKVADLKADVVIIDTDSPSR---DVLEQIcvvSQDAPK-P 75
Cdd:COG4565     3 MIRVLIVEDDPMVAELLRRYLERlPGFEVVGVASSGEEALALLAEHRPDLILLDIYLPDGdglELLREL---RARGPDvD 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1381990006  76 IVMVSEDTQPAAIKAAIKAGVSAYVVEDIDPQRLSAVLDIAQARFEQ 122
Cdd:COG4565    80 VIVITAARDPETVREALRAGVVDYLIKPFTFERLREALERYLEYRRL 126
CheY COG0784
CheY-like REC (receiver) domain, includes chemotaxis protein CheY and sporulation regulator ...
 1-113 9.82e-03

CheY-like REC (receiver) domain, includes chemotaxis protein CheY and sporulation regulator Spo0F [Signal transduction mechanisms];


Pssm-ID: 440547 [Multi-domain]  Cd Length: 128  Bit Score: 34.83  E-value: 9.82e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1381990006   1 MLRVLLV--NDTNKQVgrLRAALMQAGCDVVEeVTSALMIPKKVADLKADVVIIDTDSPSRD---VLEQICVVSQDAPKP 75
Cdd:COG0784     5 GKRILVVddNPDNREL--LRRLLERLGYEVTT-AEDGAEALELLRAGPPDLILLDINMPGMDgleLLRRIRALPRLPDIP 81

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1381990006  76 IVMVSEDTQPAAIKAAIKAGVSAYVVEDIDPQRLSAVL 113
Cdd:COG0784    82 IIALTAYADEEDRERALEAGADDYLTKPVDPEELLEAL 119
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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