|
Name |
Accession |
Description |
Interval |
E-value |
| secD |
PRK05812 |
preprotein translocase subunit SecD; Reviewed |
103-608 |
0e+00 |
|
preprotein translocase subunit SecD; Reviewed
Pssm-ID: 235615 [Multi-domain] Cd Length: 462 Bit Score: 624.94 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 103 GFVVAL-----NLLSASPQWLTSMGALPMYLGLDLRGGVHFLLQVDMKGAVTKQLDATAGDLRSLLREKNLRHGGInreg 177
Cdd:PRK05812 13 GLLYALpnlrgALAPATPEWLPALGAKPMKLGLDLRGGVHFLLEVDMDDALKKRLESLADDLRSLLREKKIRYGGV---- 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 178 etlVVRLRSEDDRKKASDYIRDargtdfqlvertdgsefliIGSLTEKGRRTIQEDAIKQNMVTLHNRVNELGVAEPVIQ 257
Cdd:PRK05812 89 ---EITFRDAEDRDKAIALLRK-------------------LSSLTEAELKEITEEALEQAIEIIRNRVNELGVAEPVIQ 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 258 QQGADRIVVQLPGVQDVAKAKDLIGRTATLQVRLVaedanpmsppagtdvfpetrgtesypvvvkkQVVLTGDRFVGAQA 337
Cdd:PRK05812 147 RQGADRIVVELPGVQDTARAKEILGKTATLEFRLV-------------------------------PVILTGDDITDASA 195
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 338 SFDSQNQqPVVSVRLDAAGGRVMRDTTRENLKKRMAIILfekgKGEAISVATIQGEF-GNQFQISGAFSTEESNRLSILI 416
Cdd:PRK05812 196 SFDQQGQ-PVVNITLDSEGAKKFADITKANIGKRMAIVL----DGEVISAPVIQSAItGGSAQITGNFTAEEARDLALLL 270
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 417 RSGSLAAPMDIIEERTIGPSLGAENIKKGFESTLWGFVAIAVFMCVYYMLFGLISTLALGANVLLLIALLSLFQATLTLP 496
Cdd:PRK05812 271 RAGALPAPLEIVEERTIGPSLGADSIRAGLIAGLIGLALVLLFMILYYRLFGLIANIALVANLVLILAVLSLLGATLTLP 350
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 497 GIAAIALTLGMAIDANVLINERIREELRNGASPQAAISAGYEHAFDTILDSNVTTLIAGIALLAFGSGPVKGFAVVHCLG 576
Cdd:PRK05812 351 GIAGIVLTIGMAVDANVLIFERIREELREGRSLRSAIEAGFKRAFSTILDSNITTLIAAIILYALGTGPVKGFAVTLGIG 430
|
490 500 510
....*....|....*....|....*....|..
gi 1326110455 577 ILTSMFSAVMVSRMITNFVYGSRRKLEKLAIG 608
Cdd:PRK05812 431 ILTSMFTAITVTRALVNLLYGRRKRLKKLSIG 462
|
|
| SecD |
COG0342 |
Preprotein translocase subunit SecD [Intracellular trafficking, secretion, and vesicular ... |
104-607 |
0e+00 |
|
Preprotein translocase subunit SecD [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440111 [Multi-domain] Cd Length: 434 Bit Score: 541.63 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 104 FVVALNLLSASPqwltsmGALPMYLGLDLRGGVHFLLQVDMKGAVTKQLDatagdlrsllreknlrhgginregetlvvr 183
Cdd:COG0342 15 LVVALSLVAPNG------PAKPIKLGLDLQGGVHLLLEVDTDAALDEDGD------------------------------ 58
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 184 lrseddrkkasdyirdargtdfqlvertdgsefliigsltekGRRTIQEDAIKQNMVTLHNRVNELGVAEPVIQQQGADR 263
Cdd:COG0342 59 ------------------------------------------GIREVTEEALDQAIEILRNRVNELGVSEPVIQRQGDDR 96
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 264 IVVQLPGVQDVAKAKDLIGRTATLQVRLVAEDANPMS-PPAGTDVFPETRGTesyPVVVKKQVVLTGDRFVGAQASFDSQ 342
Cdd:COG0342 97 IVVELPGVQDPAEAKELLGKTAKLEFRLVDDSADAQAaVPAGSELLPCRDGQ---PYLLLGPVVLTGDDLTDASAGFDQQ 173
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 343 NQQPVVSVRLDAAGGRVMRDTTRENLKKRMAIILFekgkGEAISVATIQGEF-GNQFQISGAFSTEESNRLSILIRSGSL 421
Cdd:COG0342 174 TGQPVVSFTLDSEGAKKFADATRENVGKPLAIVLD----GEVISAPVIQEPItGGSAQITGSFTVEEAQDLALLLRAGAL 249
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 422 AAPMDIIEERTIGPSLGAENIKKGFESTLWGFVAIAVFMCVYYMLFGLISTLALGANVLLLIALLSLFQATLTLPGIAAI 501
Cdd:COG0342 250 PAPLEIVEERTVGPTLGADSIEKGLIAGLIGLLLVALFMLLYYRLPGLVANIALALNVVLLLGVLSLLGATLTLPGIAGI 329
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 502 ALTLGMAIDANVLINERIREELRNGASPQAAISAGYEHAFDTILDSNVTTLIAGIALLAFGSGPVKGFAVVHCLGILTSM 581
Cdd:COG0342 330 ILTIGMAVDANVLIFERIREELRAGRSLRAAIEAGFKRAFSTILDANVTTLIAAVVLFVLGTGPVKGFAVTLILGILISM 409
|
490 500
....*....|....*....|....*.
gi 1326110455 582 FSAVMVSRMITNFVYGsRRKLEKLAI 607
Cdd:COG0342 410 FTAVPVTRPLLNLLLG-RRRLKKLGI 434
|
|
| secD |
TIGR01129 |
protein-export membrane protein SecD; Members of this family are highly variable in length ... |
128-591 |
4.06e-153 |
|
protein-export membrane protein SecD; Members of this family are highly variable in length immediately after the well-conserved motif LGLGLXGG at the amino-terminal end of this model. Archaeal homologs are not included in the seed and score between the trusted and noise cutoffs. SecD from Mycobacterium tuberculosis has a long Pro-rich insert. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273456 [Multi-domain] Cd Length: 397 Bit Score: 446.35 E-value: 4.06e-153
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 128 LGLDLRGGVHFLLQVDMKGAVTKQLdatagdlrsllreknlrhgginregetlvvrlrseddrkkasdyirdargtdfql 207
Cdd:TIGR01129 1 LGLDLRGGARVLLEVDMSTAVVLKL------------------------------------------------------- 25
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 208 vertdgsefliigslTEKGRRTIQEDAIKQNMVTLHNRVNELGVAEPVIQQQGADRIVVQLPGVQDVAKAKDLIGRTATL 287
Cdd:TIGR01129 26 ---------------SEAEVNAIRKDALEQVITILRNRVNALGVSEPVVQRQGKDRIVVELPGVTDTSRAKDILGGTATL 90
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 288 QVRLV------AEDANPMSPPAGTDVFPeTRGTESYPVVVKKQVVLTGDRFVGAQASFDSQNQQPVVSVRLDAAGGRVMR 361
Cdd:TIGR01129 91 EFRLVddestsPDDALAGNVPAGSELLD-SRSGDPKYYLLKKSPVLTGDHITDATSSVDQRSGQPVVSFSLDSEGARIFG 169
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 362 DTTRENLKKRMAIILFEKgkgeAISVATIQGEF-GNQFQISGAFSTEESNRLSILIRSGSLAAPMDIIEERTIGPSLGAE 440
Cdd:TIGR01129 170 DFTQANIGKRLAIVLDNK----VVSAPTIQEAItGGSGQITGNFTAEEANDLALVLRSGALPAPLQILEERTIGPSLGAD 245
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 441 NIKKGFESTLWGFVAIAVFMCVYYMLFGLISTLALGANVLLLIALLSLFQATLTLPGIAAIALTLGMAIDANVLINERIR 520
Cdd:TIGR01129 246 SIEAGIKAGLIGLVLVLVFMILYYRLFGLIAAIALVINIVLILAILSAFGATLTLPGIAGLILTIGMAVDANVLIYERIK 325
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1326110455 521 EELRNGASPQAAISAGYEHAFDTILDSNVTTLIAGIALLAFGSGPVKGFAVVHCLGILTSMFSAVMVSRMI 591
Cdd:TIGR01129 326 EELRLGKSVRQAIEAGFERAFSTIFDANITTLIAALILYVFGTGPVKGFAVTLAIGIIASLFTALVFTRLL 396
|
|
| SecD-TM1 |
pfam13721 |
SecD export protein N-terminal TM region; This domain appears to be the fist transmembrane ... |
1-108 |
1.92e-33 |
|
SecD export protein N-terminal TM region; This domain appears to be the fist transmembrane region of the SecD export protein. SecD is directly involved in protein secretion and important for the release of proteins that have been translocated across the cytoplasmic membrane.
Pssm-ID: 463968 [Multi-domain] Cd Length: 103 Bit Score: 123.39 E-value: 1.92e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 1 MNRYPLWKNLLIGLVLVLGLLYTLPNFFGEVPAVQVSAARSTTKVDSNIERQVLAALSAASIEPTGLIRDPAGLRVRLAN 80
Cdd:pfam13721 1 MNRYPLWKYLLILVVLLIGLLYALPNLYGEDPAVQISAARGGAKVDEATLDRVEQALKAAGIPVKSIELEGDSLLVRFDS 80
|
90 100
....*....|....*....|....*...
gi 1326110455 81 EDIQLKARDVIEHALNPDaqnpgFVVAL 108
Cdd:pfam13721 81 TDDQLKAKDVLQRALGDD-----YVVAL 103
|
|
| SecD_SecF |
pfam02355 |
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF ... |
427-588 |
3.31e-10 |
|
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF protein export membrane proteins. This SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC. SecD and SecF are required to maintain a proton motive force.
Pssm-ID: 280510 [Multi-domain] Cd Length: 189 Bit Score: 59.54 E-value: 3.31e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 427 IIEERTIGPSLGAENIKKGFESTLWGFVAIAVFMCVYYML-FGLISTLALGANVLLLIALLSLFQATLTLPGIAAIALTL 505
Cdd:pfam02355 15 IISIETVGPTVGSELARKAVLALLFALLLILIYVGLRFEWrFALGAIIALAHDVIITVGVFSLFGIEVDLATVAALLTII 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 506 GMAIDANVLINERIREELRNgaspqaAISAGYEHAFD---------TILDSnVTTLIAGIALLAFGSGPVKGFAVVHCLG 576
Cdd:pfam02355 95 GYSVNDTVVVFDRVRENLRK------KTRATLNEIMNlsinqtltrTINTS-LTTLLVVVALFVFGGGSLKDFSLALLVG 167
|
170
....*....|..
gi 1326110455 577 ILTSMFSAVMVS 588
Cdd:pfam02355 168 VIVGTYSSIFIA 179
|
|
| RND_1 |
NF037998 |
protein translocase SecDF, variant type; Members of this family are identified by TCDB as ... |
454-587 |
4.20e-10 |
|
protein translocase SecDF, variant type; Members of this family are identified by TCDB as belonging to 2.A.6.4.4, a variant 12-TM type SecDF, as found in Spiroplasma, Mesoplasma, and Acholeplasma.
Pssm-ID: 468306 Cd Length: 1237 Bit Score: 62.87 E-value: 4.20e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 454 VAIAVFMCVYYMLFGLISTLALGANVLLLIALLSLFQATLTLPGIAAIALTLGMAIDANVLINERIREEL-RNGASPQAA 532
Cdd:NF037998 456 IAIMIYLLFAYRLLGLFAIIIALTSISLTLYSPTWFGLAIGPESITAIFIAIGLVLESCSLLFEAFKKHLyKNKRSIEES 535
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 1326110455 533 ISAGYEHAFDTILDSNVTTLIAGIALLAFGSGPVKGFAVVHCLGiltSMFSAVMV 587
Cdd:NF037998 536 FKIANKETIGIIVDALVVLLIPNLSLFWIGSNSIKSFATILLVG---VIISLVLV 587
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| secD |
PRK05812 |
preprotein translocase subunit SecD; Reviewed |
103-608 |
0e+00 |
|
preprotein translocase subunit SecD; Reviewed
Pssm-ID: 235615 [Multi-domain] Cd Length: 462 Bit Score: 624.94 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 103 GFVVAL-----NLLSASPQWLTSMGALPMYLGLDLRGGVHFLLQVDMKGAVTKQLDATAGDLRSLLREKNLRHGGInreg 177
Cdd:PRK05812 13 GLLYALpnlrgALAPATPEWLPALGAKPMKLGLDLRGGVHFLLEVDMDDALKKRLESLADDLRSLLREKKIRYGGV---- 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 178 etlVVRLRSEDDRKKASDYIRDargtdfqlvertdgsefliIGSLTEKGRRTIQEDAIKQNMVTLHNRVNELGVAEPVIQ 257
Cdd:PRK05812 89 ---EITFRDAEDRDKAIALLRK-------------------LSSLTEAELKEITEEALEQAIEIIRNRVNELGVAEPVIQ 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 258 QQGADRIVVQLPGVQDVAKAKDLIGRTATLQVRLVaedanpmsppagtdvfpetrgtesypvvvkkQVVLTGDRFVGAQA 337
Cdd:PRK05812 147 RQGADRIVVELPGVQDTARAKEILGKTATLEFRLV-------------------------------PVILTGDDITDASA 195
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 338 SFDSQNQqPVVSVRLDAAGGRVMRDTTRENLKKRMAIILfekgKGEAISVATIQGEF-GNQFQISGAFSTEESNRLSILI 416
Cdd:PRK05812 196 SFDQQGQ-PVVNITLDSEGAKKFADITKANIGKRMAIVL----DGEVISAPVIQSAItGGSAQITGNFTAEEARDLALLL 270
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 417 RSGSLAAPMDIIEERTIGPSLGAENIKKGFESTLWGFVAIAVFMCVYYMLFGLISTLALGANVLLLIALLSLFQATLTLP 496
Cdd:PRK05812 271 RAGALPAPLEIVEERTIGPSLGADSIRAGLIAGLIGLALVLLFMILYYRLFGLIANIALVANLVLILAVLSLLGATLTLP 350
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 497 GIAAIALTLGMAIDANVLINERIREELRNGASPQAAISAGYEHAFDTILDSNVTTLIAGIALLAFGSGPVKGFAVVHCLG 576
Cdd:PRK05812 351 GIAGIVLTIGMAVDANVLIFERIREELREGRSLRSAIEAGFKRAFSTILDSNITTLIAAIILYALGTGPVKGFAVTLGIG 430
|
490 500 510
....*....|....*....|....*....|..
gi 1326110455 577 ILTSMFSAVMVSRMITNFVYGSRRKLEKLAIG 608
Cdd:PRK05812 431 ILTSMFTAITVTRALVNLLYGRRKRLKKLSIG 462
|
|
| SecD |
COG0342 |
Preprotein translocase subunit SecD [Intracellular trafficking, secretion, and vesicular ... |
104-607 |
0e+00 |
|
Preprotein translocase subunit SecD [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440111 [Multi-domain] Cd Length: 434 Bit Score: 541.63 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 104 FVVALNLLSASPqwltsmGALPMYLGLDLRGGVHFLLQVDMKGAVTKQLDatagdlrsllreknlrhgginregetlvvr 183
Cdd:COG0342 15 LVVALSLVAPNG------PAKPIKLGLDLQGGVHLLLEVDTDAALDEDGD------------------------------ 58
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 184 lrseddrkkasdyirdargtdfqlvertdgsefliigsltekGRRTIQEDAIKQNMVTLHNRVNELGVAEPVIQQQGADR 263
Cdd:COG0342 59 ------------------------------------------GIREVTEEALDQAIEILRNRVNELGVSEPVIQRQGDDR 96
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 264 IVVQLPGVQDVAKAKDLIGRTATLQVRLVAEDANPMS-PPAGTDVFPETRGTesyPVVVKKQVVLTGDRFVGAQASFDSQ 342
Cdd:COG0342 97 IVVELPGVQDPAEAKELLGKTAKLEFRLVDDSADAQAaVPAGSELLPCRDGQ---PYLLLGPVVLTGDDLTDASAGFDQQ 173
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 343 NQQPVVSVRLDAAGGRVMRDTTRENLKKRMAIILFekgkGEAISVATIQGEF-GNQFQISGAFSTEESNRLSILIRSGSL 421
Cdd:COG0342 174 TGQPVVSFTLDSEGAKKFADATRENVGKPLAIVLD----GEVISAPVIQEPItGGSAQITGSFTVEEAQDLALLLRAGAL 249
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 422 AAPMDIIEERTIGPSLGAENIKKGFESTLWGFVAIAVFMCVYYMLFGLISTLALGANVLLLIALLSLFQATLTLPGIAAI 501
Cdd:COG0342 250 PAPLEIVEERTVGPTLGADSIEKGLIAGLIGLLLVALFMLLYYRLPGLVANIALALNVVLLLGVLSLLGATLTLPGIAGI 329
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 502 ALTLGMAIDANVLINERIREELRNGASPQAAISAGYEHAFDTILDSNVTTLIAGIALLAFGSGPVKGFAVVHCLGILTSM 581
Cdd:COG0342 330 ILTIGMAVDANVLIFERIREELRAGRSLRAAIEAGFKRAFSTILDANVTTLIAAVVLFVLGTGPVKGFAVTLILGILISM 409
|
490 500
....*....|....*....|....*.
gi 1326110455 582 FSAVMVSRMITNFVYGsRRKLEKLAI 607
Cdd:COG0342 410 FTAVPVTRPLLNLLLG-RRRLKKLGI 434
|
|
| secD |
TIGR01129 |
protein-export membrane protein SecD; Members of this family are highly variable in length ... |
128-591 |
4.06e-153 |
|
protein-export membrane protein SecD; Members of this family are highly variable in length immediately after the well-conserved motif LGLGLXGG at the amino-terminal end of this model. Archaeal homologs are not included in the seed and score between the trusted and noise cutoffs. SecD from Mycobacterium tuberculosis has a long Pro-rich insert. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273456 [Multi-domain] Cd Length: 397 Bit Score: 446.35 E-value: 4.06e-153
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 128 LGLDLRGGVHFLLQVDMKGAVTKQLdatagdlrsllreknlrhgginregetlvvrlrseddrkkasdyirdargtdfql 207
Cdd:TIGR01129 1 LGLDLRGGARVLLEVDMSTAVVLKL------------------------------------------------------- 25
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 208 vertdgsefliigslTEKGRRTIQEDAIKQNMVTLHNRVNELGVAEPVIQQQGADRIVVQLPGVQDVAKAKDLIGRTATL 287
Cdd:TIGR01129 26 ---------------SEAEVNAIRKDALEQVITILRNRVNALGVSEPVVQRQGKDRIVVELPGVTDTSRAKDILGGTATL 90
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 288 QVRLV------AEDANPMSPPAGTDVFPeTRGTESYPVVVKKQVVLTGDRFVGAQASFDSQNQQPVVSVRLDAAGGRVMR 361
Cdd:TIGR01129 91 EFRLVddestsPDDALAGNVPAGSELLD-SRSGDPKYYLLKKSPVLTGDHITDATSSVDQRSGQPVVSFSLDSEGARIFG 169
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 362 DTTRENLKKRMAIILFEKgkgeAISVATIQGEF-GNQFQISGAFSTEESNRLSILIRSGSLAAPMDIIEERTIGPSLGAE 440
Cdd:TIGR01129 170 DFTQANIGKRLAIVLDNK----VVSAPTIQEAItGGSGQITGNFTAEEANDLALVLRSGALPAPLQILEERTIGPSLGAD 245
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 441 NIKKGFESTLWGFVAIAVFMCVYYMLFGLISTLALGANVLLLIALLSLFQATLTLPGIAAIALTLGMAIDANVLINERIR 520
Cdd:TIGR01129 246 SIEAGIKAGLIGLVLVLVFMILYYRLFGLIAAIALVINIVLILAILSAFGATLTLPGIAGLILTIGMAVDANVLIYERIK 325
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1326110455 521 EELRNGASPQAAISAGYEHAFDTILDSNVTTLIAGIALLAFGSGPVKGFAVVHCLGILTSMFSAVMVSRMI 591
Cdd:TIGR01129 326 EELRLGKSVRQAIEAGFERAFSTIFDANITTLIAALILYVFGTGPVKGFAVTLAIGIIASLFTALVFTRLL 396
|
|
| secD |
PRK12933 |
protein translocase subunit SecD; |
1-602 |
3.04e-147 |
|
protein translocase subunit SecD;
Pssm-ID: 183831 [Multi-domain] Cd Length: 604 Bit Score: 438.74 E-value: 3.04e-147
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 1 MNRYPLWKNLLIGLVLVLGLLYTLPNFFGEVPAVQVSAArsttkvdSNIERQVLA---ALSAASIEPTGLIRDPAGLRVR 77
Cdd:PRK12933 10 LNHYSAWKYVVLIVTIIILLLSAIPTWYGEDAAVQVSAK-------AGLLLNVVElrqLLQAQGINVKRIDQKEGKTLIV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 78 LANEDIQLKARDVIEHALNPDAQnpgfvVALNLLSASPQWLTSMGALPMYLGLDLRGGVHFLLQVDMKGAVTKQLDATAG 157
Cdd:PRK12933 83 LDDDSQQSQAKTLLSSMVKEPKE-----LTLSLASAAPKWLQNMGFSPIKLGLDLRGGVQFLLDVDVDPVYQEQRDALVD 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 158 DLRSLLREKNLRHGGI-NREGETLVVRLRSEDDRKKASDYIRdargTDFQLVERTDGSEFLIIGSLTEKGRRTIQEDAIK 236
Cdd:PRK12933 158 SVRQFLREQRIRGVSVrLDDSDQLAVTTPDNDARSAVRQFIQ----QNYPGWQVTNSDDRGLQLKLSQQEKTKFRNLTVQ 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 237 QNMVTLHNRVNELGVAEPVIQQQGADRIVVQLPGVQDVAKAKDLIGRTATLQVRLVAEdanpmSPPAGTDVFPETRGTes 316
Cdd:PRK12933 234 QNLQIMRSRIEELGITEALVQRQGEHRIRIELPGVQDPAAAKNVIGATASLAFYEVKE-----SGSVNAKVLKDKNGR-- 306
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 317 yPVVVKKQVVLTGDRFVGAQASFDSQNQqPVVSVRLDAAGGRVMRDTTRENLKKRMAIILFEKGKGEA---------ISV 387
Cdd:PRK12933 307 -PVYVARRPVLGGEHIVDARASLGEMGM-AEVNISLDRAGGKKMSDFSRDNIGKPMATSYSEYSRDEQgktkqseevISV 384
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 388 ATIQGEFGNQFQISGAFSTEESNRLSILIRSGSLAAPMDIIEERTIGPSLGAENIKKGFESTLWGFVAIAVFMCVYYMLF 467
Cdd:PRK12933 385 ATIQSQLGDRFRITGAGSYQEAQQLALLLRAGSLTAPVTIVEERTIGPSLGAENIENGFAALALGMGITLLFMALWYRRL 464
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 468 GLISTLALGAN-VLLLIALLSLFQATLTLPGIAAIALTLGMAIDANVLINERIREELRNGASPQAAISAGYEHAFDTILD 546
Cdd:PRK12933 465 GWVANVALIANmVCLFGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLKEGRSFAQAIDTGFDSAFSTIFD 544
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*...
gi 1326110455 547 SNVTTLIAGIALLAFGSGPVKGFAVVHCLGILTSMFSAVMVSRMITNFVYG--SRRKL 602
Cdd:PRK12933 545 ANFTTMITAVVLYSIGNGPIQGFALTLGLGLLTSMFTGIFASRALINLVYGrdARRDV 602
|
|
| PRK13024 |
PRK13024 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
228-605 |
7.07e-131 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 237276 [Multi-domain] Cd Length: 755 Bit Score: 401.53 E-value: 7.07e-131
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 228 RTIQEDAIKQNMVTLHNRVNELGVAEPVIQQQGADRIVVQLPGVQDVAKAKDLIGRTATLQVRLVAEDANPMSPPAGTDV 307
Cdd:PRK13024 54 KKADREALDSTVEVLRNRIDGLGVSEPNIQREGNNRIRVELPGVQDPERARELLGSTAKLTFRDVTDPPPPGVGGPVVGP 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 308 FpetrgtESYPVVVKKQVVLTGDRFVGAQASFDSQNQ-QPVVSVRLDAAGGRVMRDTTRENLK-----KRMAIILfekgK 381
Cdd:PRK13024 134 D------EGKDTAVLNPVLLSGDDLTDAGAKFDQDQTnRPSVSLKLKSEGAKKWAKVTEKNSKkgppnNRIAIVL----D 203
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 382 GEAISVATIQGEF-GNQFQISGAFSTEESNRLSILIRSGSLAAPMDIIEERTIGPSLGAENIKKGFESTLWGFVAIAVFM 460
Cdd:PRK13024 204 PKVISAPTVNQPInGGSVQISGNFTVEEAKDLANLLNAGALPAPLKIIESRSVGPTLGQDAIDAGIIAGIIGFALIFLFM 283
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 461 CVYYMLFGLISTLALGANVLLLIALLSLFQATLTLPGIAAIALTLGMAIDANVLINERIREELRNGASPQAAISAGYEHA 540
Cdd:PRK13024 284 LVYYGLPGLIANIALLLYIFLTLGALSSLGAVLTLPGIAGLVLGIGMAVDANVLIFERIKEELRKGKSLKKAFKKGFKNA 363
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1326110455 541 FDTILDSNVTTLIAGIALLAFGSGPVKGFAVVHCLGILTSMFSAVMVSRMITNFVYGSRRKLEKL 605
Cdd:PRK13024 364 FSTILDSNITTLIAAAILFFFGTGPVKGFATTLIIGILASLFTAVFLTRLLLELLVKRGDKKPFL 428
|
|
| PRK14726 |
PRK14726 |
protein translocase subunit SecDF; |
103-600 |
4.76e-120 |
|
protein translocase subunit SecDF;
Pssm-ID: 237805 [Multi-domain] Cd Length: 855 Bit Score: 376.37 E-value: 4.76e-120
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 103 GFVVAL-NLLSAS-----PQWLTSMgalPMYLGLDLRGGVHFLLQVDMKGAVTKQLDATAGDLRSLLREKNLRHGGINRE 176
Cdd:PRK14726 19 GVAIAApNLLSEAqlaslPSWLPHR---QVTLGLDLQGGSHIVLKVERSDIVKDRLEETVANIRNALRDAGIRYTGLTGN 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 177 GETLVVRLRSEDDRKKASDYIRD-----ARGTDF----QLVERTDGSEFLIIGSLTEKGRRTIQEDAIKQNMVTLHNRVN 247
Cdd:PRK14726 96 GQTVQVRITDPAQTQAAVDALKPltapvSAGGLGgssiQELTLQEGGEGQLRLQLTDAGIDYRVSSALTQSIEVVRRRVA 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 248 ELGVAEPVIQQQGADRIVVQLPGVQDVAKAKDLIGRTATLQVRLV-----AEDANPMSPPAGTDVFpETRGTESYPVVVK 322
Cdd:PRK14726 176 ELGTTEPLIRRQGDDRIVVQVPGLVDPQRLKNLLNQPAKLSFRLVdssmpAQEALNGRPPATSEVL-YSLDDPPVPYLVE 254
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 323 KQVVLTGDRFVGAQASFDSQNQQPVVSVRLDAAGGRVMRDTTRENLKKRMAIILfekgKGEAISVATIQGEF-GNQFQIS 401
Cdd:PRK14726 255 RRAFVSGENLVDAQPVFDPQTNEPVVTFRLDAEGTQRFAQATQQNVGKHFAIVL----DGQVISAPVIDEAItGGEGRIS 330
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 402 GAFSTEESNRLSILIRSGSLAAPMDIIEERTIGPSLGAENIKKGFESTLWGFVAIAVFMCVYYMLFGLISTLALGANVLL 481
Cdd:PRK14726 331 GNFSEQGANDLAVLLRAGALPATLTVVEERTVGPGLGADSIAAGLVAGLIAAILVAALMIGFYGFLGVIAVIALIVNVVL 410
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 482 LIALLSLFQATLTLPGIAAIALTLGMAIDANVLINERIREELRNGASPQAAISAGYEHAFDTILDSNVTTLIAGIALLAF 561
Cdd:PRK14726 411 IIAVLSLLGATLTLPGIAGIVLTIGMAVDSNVLIYERIREEEKTGHSLIQALDRGFSRALATIVDANVTILIAAVILFFL 490
|
490 500 510
....*....|....*....|....*....|....*....
gi 1326110455 562 GSGPVKGFAVVHCLGILTSMFSAVMVSRMITNFVYGSRR 600
Cdd:PRK14726 491 GSGAVRGFAVTLAVGILTTVFTAFTLTRSLVAVWLRRRR 529
|
|
| PRK13023 |
PRK13023 |
protein translocase subunit SecDF; |
242-591 |
2.21e-52 |
|
protein translocase subunit SecDF;
Pssm-ID: 171842 [Multi-domain] Cd Length: 758 Bit Score: 192.14 E-value: 2.21e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 242 LHNRVNELGVAEPVIQQQGADRIVVQLPGVQDVAKAKDLIGRTATLQVRLV-----AEDANPMSPPAGTDVfpeTRGTES 316
Cdd:PRK13023 76 MRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLSFRAMddtmsPDDAIRGTPPADSEI---VYSFDD 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 317 YPV--VVKKQVVLTGDRFVGAQASFDSQNQQPVVSVRLDAAGGRVMRDTTRENLKKRMAIILfekgKGEAISVATIQGEF 394
Cdd:PRK13023 153 PPVgyLLKKTPILTGHDITDAKASISADDGQPVITLTLDDNGRRRLADLTAQGNENSFAIVV----DNQVVSAPTVSGPL 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 395 G-NQFQISGAFSTEESNRLSILIRSGSLAAPMDIIEERTIGPSLGAENIKKGFESTLWGFVAIAVFMCVYYMLFGLISTL 473
Cdd:PRK13023 229 DtSELQIEGAFDLQAANNMAVVLRSGALPQAVTVLEERTIASALGEDYASAAVLAALLAALVVGLFMVLSYGILGVIALV 308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 474 ALGANVLLLIALLSLFQATLTLPGIAAIALTLGMAIDANVLINERIREELRNGASPQAAISAGYEHAFDTILDSNVTTLI 553
Cdd:PRK13023 309 ALVVNIIILTAVLSLIGASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIVDANLTTLI 388
|
330 340 350
....*....|....*....|....*....|....*...
gi 1326110455 554 AGIALLAFGSGPVKGFAVVHCLGILTSMFSAVMVSRMI 591
Cdd:PRK13023 389 AALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLL 426
|
|
| 2A0604s01 |
TIGR00916 |
protein-export membrane protein, SecD/SecF family; The SecA,SecB,SecD,SecE,SecF,SecG and SecY ... |
431-585 |
3.77e-45 |
|
protein-export membrane protein, SecD/SecF family; The SecA,SecB,SecD,SecE,SecF,SecG and SecY proteins form the protein translocation appartus in prokaryotes. This family is specific for the SecD and SecF proteins. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273336 [Multi-domain] Cd Length: 192 Bit Score: 158.57 E-value: 3.77e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 431 RTIGPSLGAENIKKGFESTLWGFVAIAVFMCVYYMLFGLISTLALGAN-VLLLIALLSLFQATLTLPGIAAIALTLGMAI 509
Cdd:TIGR00916 35 GTVGPTLGGELIKAGIIALLIGLVLVLLYMLLRYEWRGAIAAIAALVHdVILILGVLSLFGATLTLPGIAGLLTIIGYSV 114
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1326110455 510 DANVLINERIREELR--NGASPQAAISAGYEHAFDTILDSNVTTLIAGIALLAFGSGPVKGFAVVHCLGILTSMFSAV 585
Cdd:TIGR00916 115 DDTVVIFDRIREELRkyKGRTFREAINLGINQTLSRIIDTNVTTLLAVLALYVFGGGAIKGFALTLGIGVIAGTYSSI 192
|
|
| PRK12911 |
PRK12911 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
371-589 |
1.53e-42 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 171815 [Multi-domain] Cd Length: 1403 Bit Score: 165.03 E-value: 1.53e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 371 RMAIILfekgKGEAISVATIQGEFGNQFQISGAFSTEESNRLSILIRSGSLAAPMDIIEERTIGPSLGAENIKKGFESTL 450
Cdd:PRK12911 841 RMAVVL----DGYVVSDPVLNVPLKDHASVSGKFSHREVHRLATDLKSGAMSFVPEVLSEEVISPELGKSQRTQGIISVC 916
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 451 WGFVAIAVFMCVYYMLFGLISTLALGANVLLLIALLSLFQATLTLPGIAAIALTLGMAIDANVLINERIREELRNGASPQ 530
Cdd:PRK12911 917 LGLAVLIVLMSVYYRFGGVIASGAVLLNLLLIWAALQYLDAPLTLSGLAGIVLAMGMAVDANVLVFERIREEYLLSRSLS 996
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1326110455 531 AAISAGYEHAFDTILDSNVTTLIAGIALLAFGSGPVKGFAVVHCLGILTSMFSAVMVSR 589
Cdd:PRK12911 997 ESVEAGYKKAFSAIFDSNLTTILASALLLMLDTGPIKGFALTLIIGIFSSMFTALFMTK 1055
|
|
| SecD-TM1 |
pfam13721 |
SecD export protein N-terminal TM region; This domain appears to be the fist transmembrane ... |
1-108 |
1.92e-33 |
|
SecD export protein N-terminal TM region; This domain appears to be the fist transmembrane region of the SecD export protein. SecD is directly involved in protein secretion and important for the release of proteins that have been translocated across the cytoplasmic membrane.
Pssm-ID: 463968 [Multi-domain] Cd Length: 103 Bit Score: 123.39 E-value: 1.92e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 1 MNRYPLWKNLLIGLVLVLGLLYTLPNFFGEVPAVQVSAARSTTKVDSNIERQVLAALSAASIEPTGLIRDPAGLRVRLAN 80
Cdd:pfam13721 1 MNRYPLWKYLLILVVLLIGLLYALPNLYGEDPAVQISAARGGAKVDEATLDRVEQALKAAGIPVKSIELEGDSLLVRFDS 80
|
90 100
....*....|....*....|....*...
gi 1326110455 81 EDIQLKARDVIEHALNPDaqnpgFVVAL 108
Cdd:pfam13721 81 TDDQLKAKDVLQRALGDD-----YVVAL 103
|
|
| secD |
PRK08343 |
preprotein translocase subunit SecD; Reviewed |
241-597 |
6.59e-18 |
|
preprotein translocase subunit SecD; Reviewed
Pssm-ID: 236245 [Multi-domain] Cd Length: 417 Bit Score: 86.47 E-value: 6.59e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 241 TLHNRVNELGVAEPVIQQQGADRIVVQLPGVqDVAKAKDLIGRTATLQVRLVAEDANPmsppagtdvfpetrgtesypvv 320
Cdd:PRK08343 71 ILESRLNALGLKDIKVYPVGDQYIVVEVPGV-DADTAKEIIEKQGVFEARIQTPGNNN---------------------- 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 321 vkkQVVLTGDRFVG-AQASFDSQNQQPVVSVRLDAAGGR----VMRDTTRENLKKRMAIILFEKGkgEAISVATIQGEFG 395
Cdd:PRK08343 128 ---ETVLTGDDIESvGSPSQDPSGGAWGVPFTLSEDGAEkfaeVAKGKGATDDPSGHPLDMYLDG--ELIYAAPLSPDLA 202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 396 N-----------QFQISGAFSTEESNRLSILIRSGSLAAPMDIIEERTIGPSLGaENIKKGfeSTLWGFVA-IAVFMCVY 463
Cdd:PRK08343 203 SglasgpvvitvGSTGTTEEAKEEAKELYIHLRSGALPVKLDIEGSGSVSPSLG-EQFKKG--SLIAGLLAlLAVALVVF 279
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 464 Y----------MLFGLIS--TLALGAnvlllialLSLFQATLTLPGIAAIALTLGMAIDANVLI-NERIREElrnGASPQ 530
Cdd:PRK08343 280 LryreprialpMVITSLSevIIILGF--------AALIGWQLDLASIAGIIAVIGTGVDDLIIItDEVLHEG---KVPSR 348
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1326110455 531 AAISAGYEHAFDTILDSNVTTLIAGIALLAFGSGPVKGFAVVHCLGILTSMFsavmvsrmITNFVYG 597
Cdd:PRK08343 349 KVFLSRIKRAFFIIFAAAATTIAAMSPLAVMGLGDLKGFAITTILGVLIGVL--------ITRPAYG 407
|
|
| SecF |
COG0341 |
Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular ... |
385-587 |
1.27e-10 |
|
Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440110 [Multi-domain] Cd Length: 291 Bit Score: 62.76 E-value: 1.27e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 385 ISVATIQgEFG--NQFQISGAFSTEESNRLSILIRSG--SLAAPMDIIEERTIGPSLGAENIKKGFESTLWGFVAIAVFM 460
Cdd:COG0341 72 LGDASVQ-TFGsdNDVLIRTPPLDGESAEEVEKVRAAlkEAFGDVEIVRVEFVGPTVGKELTRKALLALLVALIGILIYI 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 461 CVYY-MLFGLISTLALGANVLLLIALLSLFQATLTLPGIAAIaLT-LGMAIDANVLINERIREELRNGASpqaaisAGYE 538
Cdd:COG0341 151 AFRFeWRFAVGAVVALLHDVLITLGIFSLFGLEFDLTFIAAL-LTiIGYSLNDTVVVFDRIRENLRKYRK------MTLA 223
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1326110455 539 HAFD---------TILDSnVTTLIAGIALLAFGSGPVKGFAVVHCLGILTSMFSAVMV 587
Cdd:COG0341 224 EIINlsinqtlsrTINTS-LTTLLVVLALLFFGGETLRDFALALLIGIIVGTYSSIFI 280
|
|
| secF |
PRK13021 |
preprotein translocase subunit SecF; Reviewed |
352-587 |
1.98e-10 |
|
preprotein translocase subunit SecF; Reviewed
Pssm-ID: 237274 [Multi-domain] Cd Length: 297 Bit Score: 62.18 E-value: 1.98e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 352 LDAAGGRVMRDTTRENLKKRMAIILFEKGKGEAISVaTIQGEFGnQFQISGAFSTEESNRLSILIRSGSLAAPMDIIEER 431
Cdd:PRK13021 37 LDFTGGVVTEVQLDRKITSSELQPLLNAAYQQEVSV-ISASEPG-RWVLRYAPADTAQSNVDIQQALAPLGTEVQVLNSS 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 432 TIGPSLGAENIKKGFESTLWGFVAIAVFMCVYY-MLFGLISTLALGANVLLLIALLSLFQATLTLPGIAAIALTLGMAID 510
Cdd:PRK13021 115 IVGPQVGQELAEQGGLALLVAMLCILGYLSYRFeWRLASGALFALVHDVIFVLAFFALTQMEFNLTVLAAVLAILGYSLN 194
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 511 ANVLINERIREELRngASPQAAISAGYEHA----FDTILDSNVTTLIAGIALLAFGSGPVKGFAVVHCLGILTSMFSAVM 586
Cdd:PRK13021 195 DSIIIADRIRELLI--AKPKLAIQEINNQAivatFSRTMVTSGTTLMTVGALWIMGGGPLEGFSIAMFIGILTGTFSSIS 272
|
.
gi 1326110455 587 V 587
Cdd:PRK13021 273 V 273
|
|
| SecD_SecF |
pfam02355 |
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF ... |
427-588 |
3.31e-10 |
|
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF protein export membrane proteins. This SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC. SecD and SecF are required to maintain a proton motive force.
Pssm-ID: 280510 [Multi-domain] Cd Length: 189 Bit Score: 59.54 E-value: 3.31e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 427 IIEERTIGPSLGAENIKKGFESTLWGFVAIAVFMCVYYML-FGLISTLALGANVLLLIALLSLFQATLTLPGIAAIALTL 505
Cdd:pfam02355 15 IISIETVGPTVGSELARKAVLALLFALLLILIYVGLRFEWrFALGAIIALAHDVIITVGVFSLFGIEVDLATVAALLTII 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 506 GMAIDANVLINERIREELRNgaspqaAISAGYEHAFD---------TILDSnVTTLIAGIALLAFGSGPVKGFAVVHCLG 576
Cdd:pfam02355 95 GYSVNDTVVVFDRVRENLRK------KTRATLNEIMNlsinqtltrTINTS-LTTLLVVVALFVFGGGSLKDFSLALLVG 167
|
170
....*....|..
gi 1326110455 577 ILTSMFSAVMVS 588
Cdd:pfam02355 168 VIVGTYSSIFIA 179
|
|
| 3a0501s07 |
TIGR00966 |
protein-export membrane protein SecF; This bacterial protein is always found with the ... |
427-588 |
3.57e-10 |
|
protein-export membrane protein SecF; This bacterial protein is always found with the homologous protein-export membrane protein SecD. In numerous lineages, this protein occurs as a SecDF fusion protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273368 [Multi-domain] Cd Length: 246 Bit Score: 60.75 E-value: 3.57e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 427 IIEERTIGPSLGAENIKKGFESTLWGFVAIAVFMCVYYML-FGLISTLALGANVLLLIALLSLFQATLTLPGIAAIALTL 505
Cdd:TIGR00966 82 IRSIDAVGPSVGGELARKAVLALLAALVLILIYITVRFEWrFALGAIVALVHDVIITVGVYSLFGIEVNLTTVAALLTII 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 506 GMAIDANVLINERIREELRNGAspqaaiSAGYEHAFD---------TILDSnVTTLIAGIALLAFGSGPVKGFAVVHCLG 576
Cdd:TIGR00966 162 GYSINDTVVVFDRIRENLRKYT------RKTFTEVINlsinqtlsrTINTS-LTTLLAVLALYVFGGGVIKDFSLALLVG 234
|
170
....*....|..
gi 1326110455 577 ILTSMFSAVMVS 588
Cdd:TIGR00966 235 VIVGTYSSIFIA 246
|
|
| RND_1 |
NF037998 |
protein translocase SecDF, variant type; Members of this family are identified by TCDB as ... |
454-587 |
4.20e-10 |
|
protein translocase SecDF, variant type; Members of this family are identified by TCDB as belonging to 2.A.6.4.4, a variant 12-TM type SecDF, as found in Spiroplasma, Mesoplasma, and Acholeplasma.
Pssm-ID: 468306 Cd Length: 1237 Bit Score: 62.87 E-value: 4.20e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 454 VAIAVFMCVYYMLFGLISTLALGANVLLLIALLSLFQATLTLPGIAAIALTLGMAIDANVLINERIREEL-RNGASPQAA 532
Cdd:NF037998 456 IAIMIYLLFAYRLLGLFAIIIALTSISLTLYSPTWFGLAIGPESITAIFIAIGLVLESCSLLFEAFKKHLyKNKRSIEES 535
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 1326110455 533 ISAGYEHAFDTILDSNVTTLIAGIALLAFGSGPVKGFAVVHCLGiltSMFSAVMV 587
Cdd:NF037998 536 FKIANKETIGIIVDALVVLLIPNLSLFWIGSNSIKSFATILLVG---VIISLVLV 587
|
|
| MMPL |
COG1033 |
Predicted exporter protein, RND superfamily [General function prediction only]; |
441-587 |
9.08e-09 |
|
Predicted exporter protein, RND superfamily [General function prediction only];
Pssm-ID: 440656 [Multi-domain] Cd Length: 767 Bit Score: 58.33 E-value: 9.08e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 441 NIKKGFESTLWGFVAIAVFMCVYY--MLFGLISTLALGANVLLLIALLSLFQATLTLPGIAAIALTLGMAIDANVLINER 518
Cdd:COG1033 603 VIESQIRSLLLALLLIFLLLLLAFrsLRLGLISLIPNLLPILLTFGLMGLLGIPLNIATAVVASIALGIGVDYTIHFLSR 682
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 519 IREELRNGASPQAAISAGYEHAFDTILdSNVTTLIAGIALLAFGS-GPVKGFAVVHCLGILTSMFSAVMV 587
Cdd:COG1033 683 YREERRKGGDLEEAIRRALRTTGKAIL-FTSLTLAAGFGVLLFSSfPPLADFGLLLALGLLVALLAALLL 751
|
|
| MMPL |
COG1033 |
Predicted exporter protein, RND superfamily [General function prediction only]; |
449-587 |
2.73e-08 |
|
Predicted exporter protein, RND superfamily [General function prediction only];
Pssm-ID: 440656 [Multi-domain] Cd Length: 767 Bit Score: 56.79 E-value: 2.73e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 449 TLWGFVAIAVFMCVYY-----MLFGLISTL-----ALGANVLlliallslFQATLTLPGIAAIALTLGMAIDANV-LINe 517
Cdd:COG1033 224 FPLALLLILLLLFLFFrslrgVLLPLLVVLlaviwTLGLMGL--------LGIPLSPLTILVPPLLLAIGIDYGIhLLN- 294
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 518 RIREELRNGASPQAAISAGYEHAFDTILDSNVTTLIAGIALLAFGSGPVKGFAVVHCLGILTSMFSAVMV 587
Cdd:COG1033 295 RYREERRKGLDKREALREALRKLGPPVLLTSLTTAIGFLSLLFSDIPPIRDFGIVAAIGVLLAFLTSLTL 364
|
|
| 2A067 |
TIGR00921 |
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized ... |
498-587 |
1.18e-06 |
|
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 273340 [Multi-domain] Cd Length: 719 Bit Score: 51.76 E-value: 1.18e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 498 IAAIALTLGMAIDANVLINERIREElRNGASPQAAISAGYEHAFDTILDSNVTTLIAGIALLAFGSGPVKGFAVVHCLGI 577
Cdd:TIGR00921 624 ATTISIILGLGMDYSIHLAERYFEE-RKEHGPKEAITHTMERTGPGILFSGLTTAGGFLSLLLSHFPIMRNFGLVQGIGV 702
|
90
....*....|
gi 1326110455 578 LTSMFSAVMV 587
Cdd:TIGR00921 703 LSSLTAALVV 712
|
|
| PRK13023 |
PRK13023 |
protein translocase subunit SecDF; |
433-588 |
1.27e-06 |
|
protein translocase subunit SecDF;
Pssm-ID: 171842 [Multi-domain] Cd Length: 758 Bit Score: 51.54 E-value: 1.27e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 433 IGPSLGAENIKKGFESTLWGFVAIAVfmcvyYMLFGLISTLALGA------NVLLLIALLSLFQATLTLPGIAAIALTLG 506
Cdd:PRK13023 568 VGPTVSEQLSRAGVLAVILSLIGIFI-----YVWFRFRWQLALGAvlstlhDVVILSGMFIVFRMEFNLWSVAAILTIIG 642
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 507 MAIDANVLINERIREELR--NGASPQAAISAGYEHAFDTILDSNVTTLIAGIALLAFGSGPVKGFAVVHCLGILTSMFSA 584
Cdd:PRK13023 643 YSLNDTVVIYDRVRENLRryKSAPLPAIIDASINQTLSRTLLTSFVTFLAHVPLYAFGGSEIRMFALALSVGIIVASYSS 722
|
....
gi 1326110455 585 VMVS 588
Cdd:PRK13023 723 IFIA 726
|
|
| YdfJ |
COG2409 |
Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily [General function ... |
500-585 |
1.01e-05 |
|
Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily [General function prediction only];
Pssm-ID: 441964 [Multi-domain] Cd Length: 697 Bit Score: 48.61 E-value: 1.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 500 AIALTLGMAIDANVLINERIREELRNGASPQAAISAGYEHAFDTILDSNVTTLIAGIALLAFGSGPVKGFAVVHCLGILT 579
Cdd:COG2409 231 LTMLGLGVGIDYALFLVSRYREELRAGEDREEAVARAVATAGRAVLFSGLTVAIALLGLLLAGLPFLRSMGPAAAIGVAV 310
|
....*.
gi 1326110455 580 SMFSAV 585
Cdd:COG2409 311 AVLAAL 316
|
|
| PRK13024 |
PRK13024 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
432-585 |
4.98e-05 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 237276 [Multi-domain] Cd Length: 755 Bit Score: 46.38 E-value: 4.98e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 432 TIGPSLGAENIKKGFESTLWGFVAIAVFMCVYY-MLFGLISTLALGANVLLLIALLSLFQATLTLPGIAAIaLTL-GMAI 509
Cdd:PRK13024 566 TVGPTVGKELARNAIIAVLIALIGILLYILIRFeWTFSLGAILALLHDVLIVIGFFSLFRLEVDLTFIAAI-LTIiGYSI 644
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 510 DANVLINERIREELRngASPQAAISagyEHAFDTILDS-------NVTTLIAGIALLAFGSGPVKGFAVVHCLGILTSMF 582
Cdd:PRK13024 645 NDTVVVFDRIRENLR--LYKKKDLR---EIVNKSINQTlsrtintSLTTLLVLLALLIFGGSSLRNFSLALLVGLIVGTY 719
|
...
gi 1326110455 583 SAV 585
Cdd:PRK13024 720 SSI 722
|
|
| 2A067 |
TIGR00921 |
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized ... |
418-587 |
6.41e-04 |
|
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 273340 [Multi-domain] Cd Length: 719 Bit Score: 42.90 E-value: 6.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 418 SGSLAAPMDIieERTIGPSLGAENIKKG----------FESTLWGFVAIAVFMCVYYMLFGLISTLAlganvlllialls 487
Cdd:TIGR00921 178 TGSPAINYDI--EREFGKDMGTTMAISGilvvlvllldFKRWWRPLLPLVIILFGVAWVLGIMGWLG------------- 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 488 lfqATLTLPGIAAIALTLGMAIDANVLINERIREELRNGASPQAAISAGYEHAFDTILDSNVTTLIAGIALLAFGSGPVK 567
Cdd:TIGR00921 243 ---IPLYATTLLAVPMLIGVGIDYGIQTLNRYEEERDIGRAKGEAIVTAVRRTGRAVLIALLTTSAGFAALALSEFPMVS 319
|
170 180
....*....|....*....|
gi 1326110455 568 GFAVVHCLGILTSMFSAVMV 587
Cdd:TIGR00921 320 EFGLGLVAGLITAYLLTLLV 339
|
|
| Sec_GG |
pfam07549 |
SecD/SecF GG Motif; This family consists of various prokaryotic SecD and SecF protein export ... |
120-144 |
8.72e-04 |
|
SecD/SecF GG Motif; This family consists of various prokaryotic SecD and SecF protein export membrane proteins. This SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC. SecD and SecF are required to maintain a proton motive force. This alignment encompasses a -GG- motif typically found in N-terminal half of the SecD/SecF proteins.
Pssm-ID: 462205 [Multi-domain] Cd Length: 27 Bit Score: 36.88 E-value: 8.72e-04
|
| MMPL |
pfam03176 |
MMPL family; Members of this family are putative integral membrane proteins from bacteria. ... |
500-615 |
2.06e-03 |
|
MMPL family; Members of this family are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport.
Pssm-ID: 308676 [Multi-domain] Cd Length: 332 Bit Score: 40.74 E-value: 2.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 500 AIALTLGMAIDANVLINERIREELRNGASPQAAISAGYEHAFDTILDSNVTTLIAGIALLAFGSGPVKGFAVVHCLGILT 579
Cdd:pfam03176 206 LVVLLIAVGTDYALFLVSRYREELRAGEDREEAVIRAVRGTGKVVTAAGLTVAIAMLALSFARLPVFAQVGPTIAIGVLV 285
|
90 100 110
....*....|....*....|....*....|....*....
gi 1326110455 580 SMFSAVMVSRMITnfVYGSRRKL---EKLAIGQVWRATA 615
Cdd:pfam03176 286 DVLAALTLLPALL--ALLGRWGLwppKRDRTARWWRRIG 322
|
|
| PRK08578 |
PRK08578 |
preprotein translocase subunit SecF; Reviewed |
379-565 |
6.39e-03 |
|
preprotein translocase subunit SecF; Reviewed
Pssm-ID: 236302 [Multi-domain] Cd Length: 292 Bit Score: 39.14 E-value: 6.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 379 KGKGEAISVATIQGEFGNQFQISGAfstEESNRLSILIRSGSLAA--PMDIIEERTIGPSLGAENIKKGFESTLWGFVAI 456
Cdd:PRK08578 71 SGEPGVDVRKGSGNGYIITFGSGDD---TDVDKLADAVKEFFNVDsiSELNYSEKQIGPTFGSQFQEQALKAVGFAFIGM 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1326110455 457 AVfmcVYYMLF-----GLISTLALGANVLLLIALLSLFQATLTLPGIAAIALTLGMAIDANVLINERIreeLRNGASPQA 531
Cdd:PRK08578 148 AV---VVFLIFrtpvpSLAVILSAFSDIIIALALMNLFGIELSLATVAALLMLIGYSVDSDILLTTRV---LKRRGTFDE 221
|
170 180 190
....*....|....*....|....*....|....
gi 1326110455 532 AISAgyehAFDTILDSNVTTLIAGIALLAFGSGP 565
Cdd:PRK08578 222 SIKR----AMRTGITMTLTTIAAMAVLYIVSTIP 251
|
|
| |
