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Conserved domains on  [gi|1316636171|ref|WP_101322046|]
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MULTISPECIES: mannuronan 5-epimerase AlgG [Pseudomonas]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
epimerase_AlgG super family cl45661
mannuronan 5-epimerase AlgG;
27-518 0e+00

mannuronan 5-epimerase AlgG;


The actual alignment was detected with superfamily member NF038177:

Pssm-ID: 468398 [Multi-domain]  Cd Length: 519  Bit Score: 1018.62  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1316636171  27 EPGTAKGLQQAKTYTVTSAPVEPLHMEPPKLPDLTGYTAQAVQAKIDRSRKGKVSVRRMLQEESLKEFIGGDNKAAEWVQ 106
Cdd:NF038177   28 PRQLAKELQQAKTYTVTSAPIEPLEMDPPKLPDLSGYTAAAVEKKIVRKPGGKISVARMMQETALKEFTGGDNKLAEWVV 107

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1316636171 107 RQQGIPQAIFVDDGHVDLTELSKQVPKQYLSEVSPGVYLARLPIVVGQKGVLEINGKVKELRLSQERGAFLVNDGKLFVS 186
Cdd:NF038177  108 RQHGIPQAIFIEDGYVNLGQLAKKVPKQYLSEVEPGVYVARLPIVVGQGGILEIDKKVKELRLSQERGAFLVNDGKLFVT 187

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1316636171 187 DTQVTGWREKDNGPASFRSPKEFRPFLLSWGGTETYIVNSKMASFGYSQSKSYGVSISQYTPNMAKKMGRAEPTGWIIGS 266
Cdd:NF038177  188 DTKVTGWSEKNNGPAAYRTPKEFRPFLLSWGGTETYISNTKMASFGYNTSKSYGVSISQYTPNMAKRLKRPEPTGWIIDS 267

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1316636171 267 EFSDMWYGFYCYETSDFVVKDSTYRDNIVYGIDPHDRSHRLIIAGNTVHGTKKKHGIIVSREVNDSWIFNNKSYDNKLSG 346
Cdd:NF038177  268 EFSDMWYGFYCYETDDFVVKGNTYRDNIVYGIDPHDRSHRLIIAENTVYGTKKKHGIIVSREVNDSFIFNNRSYDNKLSG 347

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1316636171 347 VVIDRNSVNNLIAYNEIYRNHTDGITVYESGDNLIWGNKVINNRRHGIRVRNSVNIRLYENIAMANGLVGVYGHIKDLSD 426
Cdd:NF038177  348 IVLDRNSVGNLVAYNEVYRNHTDGITLYESGDNLLWGNRVIANRRHGIRVRNSVNIRLYENLAMANGLTGVYGHIKDLSD 427

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1316636171 427 TDRDIALDPFDAKVSLIVVGGELTANGSGPLSIDSPLSVELYKVAMLAPRKASGISLNGVLGERQDEILDLLVRQQKAVL 506
Cdd:NF038177  428 TDRDIALDPFDTKVSLIVVGGELSGNGSGPLSIDSPLSVELYRVSMLAPTKSSGISLNGVLGERQDEILDLLVRQQKAVL 507

                         490
                  ....*....|..
gi 1316636171 507 IDPVERQTEMID 518
Cdd:NF038177  508 IDPVESQTELQD 519
 
Name Accession Description Interval E-value
epimerase_AlgG NF038177
mannuronan 5-epimerase AlgG;
27-518 0e+00

mannuronan 5-epimerase AlgG;


Pssm-ID: 468398 [Multi-domain]  Cd Length: 519  Bit Score: 1018.62  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1316636171  27 EPGTAKGLQQAKTYTVTSAPVEPLHMEPPKLPDLTGYTAQAVQAKIDRSRKGKVSVRRMLQEESLKEFIGGDNKAAEWVQ 106
Cdd:NF038177   28 PRQLAKELQQAKTYTVTSAPIEPLEMDPPKLPDLSGYTAAAVEKKIVRKPGGKISVARMMQETALKEFTGGDNKLAEWVV 107

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1316636171 107 RQQGIPQAIFVDDGHVDLTELSKQVPKQYLSEVSPGVYLARLPIVVGQKGVLEINGKVKELRLSQERGAFLVNDGKLFVS 186
Cdd:NF038177  108 RQHGIPQAIFIEDGYVNLGQLAKKVPKQYLSEVEPGVYVARLPIVVGQGGILEIDKKVKELRLSQERGAFLVNDGKLFVT 187

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1316636171 187 DTQVTGWREKDNGPASFRSPKEFRPFLLSWGGTETYIVNSKMASFGYSQSKSYGVSISQYTPNMAKKMGRAEPTGWIIGS 266
Cdd:NF038177  188 DTKVTGWSEKNNGPAAYRTPKEFRPFLLSWGGTETYISNTKMASFGYNTSKSYGVSISQYTPNMAKRLKRPEPTGWIIDS 267

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1316636171 267 EFSDMWYGFYCYETSDFVVKDSTYRDNIVYGIDPHDRSHRLIIAGNTVHGTKKKHGIIVSREVNDSWIFNNKSYDNKLSG 346
Cdd:NF038177  268 EFSDMWYGFYCYETDDFVVKGNTYRDNIVYGIDPHDRSHRLIIAENTVYGTKKKHGIIVSREVNDSFIFNNRSYDNKLSG 347

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1316636171 347 VVIDRNSVNNLIAYNEIYRNHTDGITVYESGDNLIWGNKVINNRRHGIRVRNSVNIRLYENIAMANGLVGVYGHIKDLSD 426
Cdd:NF038177  348 IVLDRNSVGNLVAYNEVYRNHTDGITLYESGDNLLWGNRVIANRRHGIRVRNSVNIRLYENLAMANGLTGVYGHIKDLSD 427

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1316636171 427 TDRDIALDPFDAKVSLIVVGGELTANGSGPLSIDSPLSVELYKVAMLAPRKASGISLNGVLGERQDEILDLLVRQQKAVL 506
Cdd:NF038177  428 TDRDIALDPFDTKVSLIVVGGELSGNGSGPLSIDSPLSVELYRVSMLAPTKSSGISLNGVLGERQDEILDLLVRQQKAVL 507

                         490
                  ....*....|..
gi 1316636171 507 IDPVERQTEMID 518
Cdd:NF038177  508 IDPVESQTELQD 519
Beta_helix pfam13229
Right handed beta helix region; This region contains a parallel beta helix region that shares ...
 273-418 2.75e-18

Right handed beta helix region; This region contains a parallel beta helix region that shares some similarity with Pectate lyases.


Pssm-ID: 463811 [Multi-domain]  Cd Length: 158  Bit Score: 82.07  E-value: 2.75e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1316636171 273 YGFYCYETSDFVVKDSTYRDNIVYGIDPHDrSHRLIIAGNTVHGTKKkHGIIVSREVNdSWIFNNKSYDNKLSGVVIdRN 352
Cdd:pfam13229   1 SGILLNGSSNATIKNNTISNNGGYGIYLRG-SSNATIENNTITNNGG-DGIEISGSSN-NTISNNTISNNGGGGIAL-RG 76

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1316636171 353 SVNNLIAYNEIYRNHTDGITVYESGDNLIWGNKVINNRRHGIRV-RNSVNIRLYENIAMANGLVGVY 418
Cdd:pfam13229  77 SSNNLIENNTISNNGGAGIYLSDSSNNTIENNIIHNNGGSGIVIeDSSNNVTISNNTVTNNKGAGIL 143
NosD COG3420
Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion ...
 263-402 5.24e-13

Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion transport and metabolism];


Pssm-ID: 442646 [Multi-domain]  Cd Length: 343  Bit Score: 70.33  E-value: 5.24e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1316636171 263 IIGSEFSDMWYGFYCYETSDFVVKDSTYRDNIVyGIDPHDrSHRLIIAGNTVHGTKKkHGIIVsREVNDSWIFNNKSYDN 342
Cdd:COG3420   184 IRNNTIRNLRYGIHYMYSNDNLVEGNTFRDNGA-GIALMY-SKGNTVRGNTILGNSG-YGILL-KESSDSVIEGNTISGN 259

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1316636171 343 KlSGVVIDrNSVNNLIAYNEIYRNHTdGITVY-ESGDNLIWGNKVINNRRHGIRVRNSVNI 402
Cdd:COG3420   260 G-KGIFIY-NSNRNTIRGNLFAGNGI-GIHLTaGSEGNRIYGNNFIGNRTQVKYVGGRDNE 317
CASH smart00722
Domain present in carbohydrate binding proteins and sugar hydrolses;
282-397 5.21e-06

Domain present in carbohydrate binding proteins and sugar hydrolses;


Pssm-ID: 214788  Cd Length: 153  Bit Score: 46.35  E-value: 5.21e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1316636171  282 DFVVKDSTYRDNIVYGIDPHDRSH-------RLIIAGNTVHGTKkkHGIIVSREVNDSWIFNN----KSYDNKLSGVVID 350
Cdd:smart00722  27 GAVIDMGSGRGSNITINSNDVRVDgvtiggdGNAVTGIYVSASG--DPVIQNDGTGKNLIIDNvtfnGTEINSGAGIVVT 104

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|
gi 1316636171  351 RNSVNNLIaYNEIYRNHT---DGITVYESGDNLIWGNKVINNRRHGIRVR 397
Cdd:smart00722 105 AGSEGLFI-GNRIIGNYVatgDGNYLSDSSGGDLIGNRIYDNNRDGIAVV 153
para_beta_helix TIGR03804
parallel beta-helix repeat (two copies); This model represents a tandem pair of an ...
 370-409 2.69e-04

parallel beta-helix repeat (two copies); This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.


Pssm-ID: 274795 [Multi-domain]  Cd Length: 44  Bit Score: 38.65  E-value: 2.69e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1316636171 370 GITVYESGDNLIWGNKVINNrRHGIRVRNSVNIRLYENIA 409
Cdd:TIGR03804   1 GIYLESSSNNTLSNNTASNN-SYGIYLYDSSNNTLSNNTA 39
 
Name Accession Description Interval E-value
epimerase_AlgG NF038177
mannuronan 5-epimerase AlgG;
27-518 0e+00

mannuronan 5-epimerase AlgG;


Pssm-ID: 468398 [Multi-domain]  Cd Length: 519  Bit Score: 1018.62  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1316636171  27 EPGTAKGLQQAKTYTVTSAPVEPLHMEPPKLPDLTGYTAQAVQAKIDRSRKGKVSVRRMLQEESLKEFIGGDNKAAEWVQ 106
Cdd:NF038177   28 PRQLAKELQQAKTYTVTSAPIEPLEMDPPKLPDLSGYTAAAVEKKIVRKPGGKISVARMMQETALKEFTGGDNKLAEWVV 107

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1316636171 107 RQQGIPQAIFVDDGHVDLTELSKQVPKQYLSEVSPGVYLARLPIVVGQKGVLEINGKVKELRLSQERGAFLVNDGKLFVS 186
Cdd:NF038177  108 RQHGIPQAIFIEDGYVNLGQLAKKVPKQYLSEVEPGVYVARLPIVVGQGGILEIDKKVKELRLSQERGAFLVNDGKLFVT 187

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1316636171 187 DTQVTGWREKDNGPASFRSPKEFRPFLLSWGGTETYIVNSKMASFGYSQSKSYGVSISQYTPNMAKKMGRAEPTGWIIGS 266
Cdd:NF038177  188 DTKVTGWSEKNNGPAAYRTPKEFRPFLLSWGGTETYISNTKMASFGYNTSKSYGVSISQYTPNMAKRLKRPEPTGWIIDS 267

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1316636171 267 EFSDMWYGFYCYETSDFVVKDSTYRDNIVYGIDPHDRSHRLIIAGNTVHGTKKKHGIIVSREVNDSWIFNNKSYDNKLSG 346
Cdd:NF038177  268 EFSDMWYGFYCYETDDFVVKGNTYRDNIVYGIDPHDRSHRLIIAENTVYGTKKKHGIIVSREVNDSFIFNNRSYDNKLSG 347

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1316636171 347 VVIDRNSVNNLIAYNEIYRNHTDGITVYESGDNLIWGNKVINNRRHGIRVRNSVNIRLYENIAMANGLVGVYGHIKDLSD 426
Cdd:NF038177  348 IVLDRNSVGNLVAYNEVYRNHTDGITLYESGDNLLWGNRVIANRRHGIRVRNSVNIRLYENLAMANGLTGVYGHIKDLSD 427

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1316636171 427 TDRDIALDPFDAKVSLIVVGGELTANGSGPLSIDSPLSVELYKVAMLAPRKASGISLNGVLGERQDEILDLLVRQQKAVL 506
Cdd:NF038177  428 TDRDIALDPFDTKVSLIVVGGELSGNGSGPLSIDSPLSVELYRVSMLAPTKSSGISLNGVLGERQDEILDLLVRQQKAVL 507

                         490
                  ....*....|..
gi 1316636171 507 IDPVERQTEMID 518
Cdd:NF038177  508 IDPVESQTELQD 519
Beta_helix pfam13229
Right handed beta helix region; This region contains a parallel beta helix region that shares ...
 273-418 2.75e-18

Right handed beta helix region; This region contains a parallel beta helix region that shares some similarity with Pectate lyases.


Pssm-ID: 463811 [Multi-domain]  Cd Length: 158  Bit Score: 82.07  E-value: 2.75e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1316636171 273 YGFYCYETSDFVVKDSTYRDNIVYGIDPHDrSHRLIIAGNTVHGTKKkHGIIVSREVNdSWIFNNKSYDNKLSGVVIdRN 352
Cdd:pfam13229   1 SGILLNGSSNATIKNNTISNNGGYGIYLRG-SSNATIENNTITNNGG-DGIEISGSSN-NTISNNTISNNGGGGIAL-RG 76

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1316636171 353 SVNNLIAYNEIYRNHTDGITVYESGDNLIWGNKVINNRRHGIRV-RNSVNIRLYENIAMANGLVGVY 418
Cdd:pfam13229  77 SSNNLIENNTISNNGGAGIYLSDSSNNTIENNIIHNNGGSGIVIeDSSNNVTISNNTVTNNKGAGIL 143
Beta_helix pfam13229
Right handed beta helix region; This region contains a parallel beta helix region that shares ...
 263-407 3.14e-13

Right handed beta helix region; This region contains a parallel beta helix region that shares some similarity with Pectate lyases.


Pssm-ID: 463811 [Multi-domain]  Cd Length: 158  Bit Score: 67.43  E-value: 3.14e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1316636171 263 IIGSEFSDM-WYGFYCYETSDFVVKDSTYRDNIVYGIDPHDRShRLIIAGNTVHGTKkkHGIIVSREVNDSWIFNNKSYD 341
Cdd:pfam13229  13 IKNNTISNNgGYGIYLRGSSNATIENNTITNNGGDGIEISGSS-NNTISNNTISNNG--GGGIALRGSSNNLIENNTISN 89

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1316636171 342 NKLSGVVIDRNSvNNLIAYNEIYRNHTDGITVYESGDNL-IWGNKVINNRRHGIRVRNSV-NIRLYEN 407
Cdd:pfam13229  90 NGGAGIYLSDSS-NNTIENNIIHNNGGSGIVIEDSSNNVtISNNTVTNNKGAGILIVGGSsNNTVENN 156
NosD COG3420
Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion ...
 263-402 5.24e-13

Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion transport and metabolism];


Pssm-ID: 442646 [Multi-domain]  Cd Length: 343  Bit Score: 70.33  E-value: 5.24e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1316636171 263 IIGSEFSDMWYGFYCYETSDFVVKDSTYRDNIVyGIDPHDrSHRLIIAGNTVHGTKKkHGIIVsREVNDSWIFNNKSYDN 342
Cdd:COG3420   184 IRNNTIRNLRYGIHYMYSNDNLVEGNTFRDNGA-GIALMY-SKGNTVRGNTILGNSG-YGILL-KESSDSVIEGNTISGN 259

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1316636171 343 KlSGVVIDrNSVNNLIAYNEIYRNHTdGITVY-ESGDNLIWGNKVINNRRHGIRVRNSVNI 402
Cdd:COG3420   260 G-KGIFIY-NSNRNTIRGNLFAGNGI-GIHLTaGSEGNRIYGNNFIGNRTQVKYVGGRDNE 317
NosD COG3420
Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion ...
 263-418 1.52e-12

Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion transport and metabolism];


Pssm-ID: 442646 [Multi-domain]  Cd Length: 343  Bit Score: 68.79  E-value: 1.52e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1316636171 263 IIGSEFSDMWYGFYCYETSDFVVKDSTYRDNIVYGIDPHD-----RSHRLIIAGNTVHGTKkkHGIIVSReVNDSWIFNN 337
Cdd:COG3420   111 IENNRIENNLFGIYLEGSDNNVIRNNTISGNRDLRADRGNgihlwNSPGNVIEGNTISGGR--DGIYLEF-SDNNVIRNN 187

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1316636171 338 K------------SYDNKLSGVVIDRNSV--------NNLIAYNEIYRNHTDGITVYESGDNLIWGNKVINNRRhGIRVR 397
Cdd:COG3420   188 TirnlrygihymySNDNLVEGNTFRDNGAgialmyskGNTVRGNTILGNSGYGILLKESSDSVIEGNTISGNGK-GIFIY 266

                         170       180
                  ....*....|....*....|.
gi 1316636171 398 NSVNIRLYENIAMANGlVGVY 418
Cdd:COG3420   267 NSNRNTIRGNLFAGNG-IGIH 286
NosD COG3420
Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion ...
 263-412 1.43e-10

Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion transport and metabolism];


Pssm-ID: 442646 [Multi-domain]  Cd Length: 343  Bit Score: 62.63  E-value: 1.43e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1316636171 263 IIGSEFSDMWYGFYcYETSDfvvkDSTYRDNIV----YGIDPHDrSHRLIIAGNTVHGTKKkhGIIV--SREVNdswIFN 336
Cdd:COG3420   162 IEGNTISGGRDGIY-LEFSD----NNVIRNNTIrnlrYGIHYMY-SNDNLVEGNTFRDNGA--GIALmySKGNT---VRG 230

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1316636171 337 NKSYDNKLSGVVIdRNSVNNLIAYNEIYRNhTDGITVYESGDNLIWGNKVINNrRHGIRVR-NSVNIRLYENIAMAN 412
Cdd:COG3420   231 NTILGNSGYGILL-KESSDSVIEGNTISGN-GKGIFIYNSNRNTIRGNLFAGN-GIGIHLTaGSEGNRIYGNNFIGN 304
NosD pfam05048
Periplasmic copper-binding protein (NosD); NosD is a periplasmic protein which is thought to ...
 334-461 1.08e-08

Periplasmic copper-binding protein (NosD); NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme (NosZ). This region forms a parallel beta helix domain.


Pssm-ID: 428281 [Multi-domain]  Cd Length: 215  Bit Score: 55.50  E-value: 1.08e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1316636171 334 IFNNKSYDNKLSGVVID--------RNSVNNLIAYNEIYRNhTDGITVYESGDNLIWGNKVINNRRHGIRVRNSVNIRLY 405
Cdd:pfam05048  44 IYLDASNNNTITGNRISnlrygihlMNSNDNTISDNVFSGN-TAGIALMSSSNNTLENNTISGNTNYGILLSDSSNNTIS 122

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1316636171 406 ENIAMANGLVGVYghikdLSDTDRDialdpfdakvslIVVGGELTANGSGPLSIDS 461
Cdd:pfam05048 123 NNTISNNNGKGIF-----LYNSDYN------------TITGNRITSNGIGIHFLAG 161
NosD pfam05048
Periplasmic copper-binding protein (NosD); NosD is a periplasmic protein which is thought to ...
 263-392 1.57e-07

Periplasmic copper-binding protein (NosD); NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme (NosZ). This region forms a parallel beta helix domain.


Pssm-ID: 428281 [Multi-domain]  Cd Length: 215  Bit Score: 52.04  E-value: 1.57e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1316636171 263 IIGSEFSDMWYGFYCYEtsdfvvkdstyrdnivygidphdrSHRLIIAGNTVHGTkKKHGIIVSrEVNDSWIFNNKSYDN 342
Cdd:pfam05048  76 ISDNVFSGNTAGIALMS------------------------SSNNTLENNTISGN-TNYGILLS-DSSNNTISNNTISNN 129

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1316636171 343 KLSGVVIDrNSVNNLIAYNEIYRNhTDGITVY-ESGDNLIWGNKVINNRRH 392
Cdd:pfam05048 130 NGKGIFLY-NSDYNTITGNRITSN-GIGIHFLaGSNGNTIYNNYFINNSEN 178
CASH smart00722
Domain present in carbohydrate binding proteins and sugar hydrolses;
282-397 5.21e-06

Domain present in carbohydrate binding proteins and sugar hydrolses;


Pssm-ID: 214788  Cd Length: 153  Bit Score: 46.35  E-value: 5.21e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1316636171  282 DFVVKDSTYRDNIVYGIDPHDRSH-------RLIIAGNTVHGTKkkHGIIVSREVNDSWIFNN----KSYDNKLSGVVID 350
Cdd:smart00722  27 GAVIDMGSGRGSNITINSNDVRVDgvtiggdGNAVTGIYVSASG--DPVIQNDGTGKNLIIDNvtfnGTEINSGAGIVVT 104

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|
gi 1316636171  351 RNSVNNLIaYNEIYRNHT---DGITVYESGDNLIWGNKVINNRRHGIRVR 397
Cdd:smart00722 105 AGSEGLFI-GNRIIGNYVatgDGNYLSDSSGGDLIGNRIYDNNRDGIAVV 153
Beta_helix pfam13229
Right handed beta helix region; This region contains a parallel beta helix region that shares ...
 262-363 1.02e-04

Right handed beta helix region; This region contains a parallel beta helix region that shares some similarity with Pectate lyases.


Pssm-ID: 463811 [Multi-domain]  Cd Length: 158  Bit Score: 42.78  E-value: 1.02e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1316636171 262 WIIGSEFSDMWY-GFYCYETSDFVVKDSTYRDNIVYGIDPHDRSHrLIIAGNTVHGTKKkHGIIVSREVNDSWIFNNKSY 340
Cdd:pfam13229  58 TISNNTISNNGGgGIALRGSSNNLIENNTISNNGGAGIYLSDSSN-NTIENNIIHNNGG-SGIVIEDSSNNVTISNNTVT 135

                          90       100
                  ....*....|....*....|...
gi 1316636171 341 DNKLSGVVIDRNSVNNLIAYNEI 363
Cdd:pfam13229 136 NNKGAGILIVGGSSNNTVENNTF 158
para_beta_helix TIGR03804
parallel beta-helix repeat (two copies); This model represents a tandem pair of an ...
 370-409 2.69e-04

parallel beta-helix repeat (two copies); This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.


Pssm-ID: 274795 [Multi-domain]  Cd Length: 44  Bit Score: 38.65  E-value: 2.69e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1316636171 370 GITVYESGDNLIWGNKVINNrRHGIRVRNSVNIRLYENIA 409
Cdd:TIGR03804   1 GIYLESSSNNTLSNNTASNN-SYGIYLYDSSNNTLSNNTA 39
para_beta_helix TIGR03804
parallel beta-helix repeat (two copies); This model represents a tandem pair of an ...
 352-391 1.93e-03

parallel beta-helix repeat (two copies); This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.


Pssm-ID: 274795 [Multi-domain]  Cd Length: 44  Bit Score: 35.95  E-value: 1.93e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1316636171 352 NSVNNLIAYNEIYRNhTDGITVYESGDNLIWGNKVINNRR 391
Cdd:TIGR03804   6 SSSNNTLSNNTASNN-SYGIYLYDSSNNTLSNNTASNNGY 44
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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