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Conserved domains on  [gi|1238722499|ref|WP_095365893|]
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hypothetical protein [Pseudoalteromonas sp. NBT06-2]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK08869 super family cl35743
polar flagellin E;
1-138 5.63e-60

polar flagellin E;


The actual alignment was detected with superfamily member PRK08869:

Pssm-ID: 236344 [Multi-domain]  Cd Length: 376  Bit Score: 193.99  E-value: 5.63e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238722499   1 MLSVSTNLSSLFTQRQLTSVTNATSNSIERLSSGLRINNAEDDAAGMQLSHRITAKINGNAVAIRNANDGISMAQTAEGV 80
Cdd:PRK08869    1 AVNVNTNVSAMTAQRNLNGATSALSQSMERLSSGKRINSAKDDAAGLQISNRLTTQIRGLDVAVRNANDGISIAQTAEGA 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1238722499  81 LSEVTANLHRIRDLSLQAANGTYSRSDRASIQEEVDQLKLEINRINDTTRFGSQKLFD 138
Cdd:PRK08869   81 MNETTNILQRMRDLSLQSANGSNSASDRQALQEEVTALNDELNRIAETTSFGGTKLLN 138
flagella_HExxH super family cl41492
flagellinolysin; Flagellinolysin is a variant form of bacterial flagellin in with the normally ...
 111-253 1.47e-44

flagellinolysin; Flagellinolysin is a variant form of bacterial flagellin in with the normally hypervariable central region contains an M9 (MEROPS classification) family metalloprotease domain, with its signature HExxH motif. The founding member of the family, from the pathogen Clostridium haemolyticum, shows EDTA-sensitive metalloprotease activity. The large count of flagellin subunits in a complete flagellum means the capacity of flagellinolysin to perform as a protease may have implications for host-pathogen relationships.


The actual alignment was detected with superfamily member NF033876:

Pssm-ID: 468217  Cd Length: 380  Bit Score: 154.35  E-value: 1.47e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238722499 111 IQEEVDQLKLEINRINDTTRFGSQKLFDMG-DGRLVDIVERDMINGLASSWLRESEKIIFEQFGIDGKGQTLKIDLEQVD 189
Cdd:NF033876    1 LQKEINQLKQEIDRIAETTEFNGKKLFDQGaSVGSADPDKQAILDGLKSGWLENAEDLIKEYYGLTADGADLTVNLEYTD 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1238722499 190 GAGGTAAYVQAQSIAGIGAFNQVMVIDLDDFNASNLPEGDPNGLALDEVVLHEMVHATMGTSFD 253
Cdd:NF033876   81 GAGGTLAYVSSGSGGGGKGGNLTLTIDMADFSPANLPNGGTAPQYLDRTIAHEMVHAVMGRTMN 144
 
Name Accession Description Interval E-value
PRK08869 PRK08869
polar flagellin E;
1-138 5.63e-60

polar flagellin E;


Pssm-ID: 236344 [Multi-domain]  Cd Length: 376  Bit Score: 193.99  E-value: 5.63e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238722499   1 MLSVSTNLSSLFTQRQLTSVTNATSNSIERLSSGLRINNAEDDAAGMQLSHRITAKINGNAVAIRNANDGISMAQTAEGV 80
Cdd:PRK08869    1 AVNVNTNVSAMTAQRNLNGATSALSQSMERLSSGKRINSAKDDAAGLQISNRLTTQIRGLDVAVRNANDGISIAQTAEGA 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1238722499  81 LSEVTANLHRIRDLSLQAANGTYSRSDRASIQEEVDQLKLEINRINDTTRFGSQKLFD 138
Cdd:PRK08869   81 MNETTNILQRMRDLSLQSANGSNSASDRQALQEEVTALNDELNRIAETTSFGGTKLLN 138
flagella_HExxH NF033876
flagellinolysin; Flagellinolysin is a variant form of bacterial flagellin in with the normally ...
 111-253 1.47e-44

flagellinolysin; Flagellinolysin is a variant form of bacterial flagellin in with the normally hypervariable central region contains an M9 (MEROPS classification) family metalloprotease domain, with its signature HExxH motif. The founding member of the family, from the pathogen Clostridium haemolyticum, shows EDTA-sensitive metalloprotease activity. The large count of flagellin subunits in a complete flagellum means the capacity of flagellinolysin to perform as a protease may have implications for host-pathogen relationships.


Pssm-ID: 468217  Cd Length: 380  Bit Score: 154.35  E-value: 1.47e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238722499 111 IQEEVDQLKLEINRINDTTRFGSQKLFDMG-DGRLVDIVERDMINGLASSWLRESEKIIFEQFGIDGKGQTLKIDLEQVD 189
Cdd:NF033876    1 LQKEINQLKQEIDRIAETTEFNGKKLFDQGaSVGSADPDKQAILDGLKSGWLENAEDLIKEYYGLTADGADLTVNLEYTD 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1238722499 190 GAGGTAAYVQAQSIAGIGAFNQVMVIDLDDFNASNLPEGDPNGLALDEVVLHEMVHATMGTSFD 253
Cdd:NF033876   81 GAGGTLAYVSSGSGGGGKGGNLTLTIDMADFSPANLPNGGTAPQYLDRTIAHEMVHAVMGRTMN 144
FlgL COG1344
Flagellin and related hook-associated protein FlgL [Cell motility];
2-138 6.70e-39

Flagellin and related hook-associated protein FlgL [Cell motility];


Pssm-ID: 440955 [Multi-domain]  Cd Length: 245  Bit Score: 135.76  E-value: 6.70e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238722499   2 LSVSTNLSSLFTQRQLTSVTNATSNSIERLSSGLRINNAEDDAAGMQLSHRITAKINGNAVAIRNANDGISMAQTAEGVL 81
Cdd:COG1344     1 MRISTNMSALNALRNLNRTQSDLAKLQEQLSSGKRINSASDDPAGAAIALRLRSQIRGLEQYQRNANDAISRLQTAEGAL 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1238722499  82 SEVTANLHRIRDLSLQAANGTYSRSDRASIQEEVDQLKLEINRINDTTRFGSQKLFD 138
Cdd:COG1344    81 GEITDILQRARELAVQAANGTLSDEDRAAIAAELEQLLDQLLSIANTTDFNGRYLFA 137
Flagellin_N pfam00669
Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial ...
 4-138 1.79e-36

Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial flagella. This family includes flagellins and hook associated protein 3. Structurally this family forms an extended helix that interacts with pfam00700.


Pssm-ID: 425809 [Multi-domain]  Cd Length: 139  Bit Score: 126.30  E-value: 1.79e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238722499   4 VSTNLSSLFTQRQLTSVTNATSNSIERLSSGLRINNAEDDAAGMQLSHRITAKINGNAVAIRNANDGISMAQTAEGVLSE 83
Cdd:pfam00669   1 INTNSAALAARSNLNKNQAELSKAQERLSTGLRINSALDDAAGLAISVSLRAQIAGLSQAVRNNSLGIGRLQTAQGALSE 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1238722499  84 VTANLHRIRDLSLQAANGTYSRSDRASIQEEVDQLKLEINRINDTTRFGSQKLFD 138
Cdd:pfam00669  81 VTDILQRMKELAVQASNGGNSDIDRASIQAEIQQLTDELNNIANTTSFNGEYLLA 135
flagell_flgL TIGR02550
flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated ...
 4-119 1.20e-17

flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated proteins designated FlgL (or HAP3) encoded in bacterial flagellar operons. A N-terminal region of about 150 residues and a C-terminal region of about 85 residues are conserved. Members show considerable length heterogeneity between these two well-conserved terminal regions; the seed alignment 486 columns, 393 of which are represented in the model, while members of this family are from 287 to over 500 residues in length. This model distinguishes FlgL from the flagellin gene product FliC. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274195 [Multi-domain]  Cd Length: 306  Bit Score: 80.47  E-value: 1.20e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238722499   4 VSTNLSSLFTQRQLTSVTNATSNSIERLSSGLRINNAEDDAAGMQLSHRITAKINGNAVAIRNANDGISMAQTAEGVLSE 83
Cdd:TIGR02550   2 VSTNMLYNNSLNSITNNQSRLAKLQQQLSSGKRINKPSDDPVAAAQALNLNQELAQLEQYQKNIDDAKNWLSQTETALSS 81

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1238722499  84 VTANLHRIRDLSLQAANGTYSRSDRASIQEEVDQLK 119
Cdd:TIGR02550  82 VGDVLQRARELAVQAANGTLSDDDRKAIAKEIKQLL 117
 
Name Accession Description Interval E-value
PRK08869 PRK08869
polar flagellin E;
1-138 5.63e-60

polar flagellin E;


Pssm-ID: 236344 [Multi-domain]  Cd Length: 376  Bit Score: 193.99  E-value: 5.63e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238722499   1 MLSVSTNLSSLFTQRQLTSVTNATSNSIERLSSGLRINNAEDDAAGMQLSHRITAKINGNAVAIRNANDGISMAQTAEGV 80
Cdd:PRK08869    1 AVNVNTNVSAMTAQRNLNGATSALSQSMERLSSGKRINSAKDDAAGLQISNRLTTQIRGLDVAVRNANDGISIAQTAEGA 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1238722499  81 LSEVTANLHRIRDLSLQAANGTYSRSDRASIQEEVDQLKLEINRINDTTRFGSQKLFD 138
Cdd:PRK08869   81 MNETTNILQRMRDLSLQSANGSNSASDRQALQEEVTALNDELNRIAETTSFGGTKLLN 138
PRK06819 PRK06819
FliC/FljB family flagellin;
1-138 1.67e-47

FliC/FljB family flagellin;


Pssm-ID: 235867 [Multi-domain]  Cd Length: 376  Bit Score: 161.87  E-value: 1.67e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238722499   1 MLSV-STNLSSLFTQRQLTSVTNATSNSIERLSSGLRINNAEDDAAGMQLSHRITAKINGNAVAIRNANDGISMAQTAEG 79
Cdd:PRK06819    1 MAAViNTNSLSLLTQNNLNKSQSSLGTAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQAARNANDGISIAQTTEG 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1238722499  80 VLSEVTANLHRIRDLSLQAANGTYSRSDRASIQEEVDQLKLEINRINDTTRFGSQKLFD 138
Cdd:PRK06819   81 ALNEINNNLQRVRELTVQAQNGSNSSSDLDSIQDEISQRLAEIDRVSDQTQFNGVKVLA 139
flagella_HExxH NF033876
flagellinolysin; Flagellinolysin is a variant form of bacterial flagellin in with the normally ...
 111-253 1.47e-44

flagellinolysin; Flagellinolysin is a variant form of bacterial flagellin in with the normally hypervariable central region contains an M9 (MEROPS classification) family metalloprotease domain, with its signature HExxH motif. The founding member of the family, from the pathogen Clostridium haemolyticum, shows EDTA-sensitive metalloprotease activity. The large count of flagellin subunits in a complete flagellum means the capacity of flagellinolysin to perform as a protease may have implications for host-pathogen relationships.


Pssm-ID: 468217  Cd Length: 380  Bit Score: 154.35  E-value: 1.47e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238722499 111 IQEEVDQLKLEINRINDTTRFGSQKLFDMG-DGRLVDIVERDMINGLASSWLRESEKIIFEQFGIDGKGQTLKIDLEQVD 189
Cdd:NF033876    1 LQKEINQLKQEIDRIAETTEFNGKKLFDQGaSVGSADPDKQAILDGLKSGWLENAEDLIKEYYGLTADGADLTVNLEYTD 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1238722499 190 GAGGTAAYVQAQSIAGIGAFNQVMVIDLDDFNASNLPEGDPNGLALDEVVLHEMVHATMGTSFD 253
Cdd:NF033876   81 GAGGTLAYVSSGSGGGGKGGNLTLTIDMADFSPANLPNGGTAPQYLDRTIAHEMVHAVMGRTMN 144
PRK12802 PRK12802
flagellin; Provisional
 1-138 3.16e-41

flagellin; Provisional


Pssm-ID: 139237 [Multi-domain]  Cd Length: 282  Bit Score: 143.10  E-value: 3.16e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238722499   1 MLSVSTNLSSLFTQRQLTSVTNATSNSIERLSSGLRINNAEDDAAGMQLSHRITAKINGNAVAIRNANDGISMAQTAEGV 80
Cdd:PRK12802    2 ALTVNTNITSLTVQKNLSRASDALSTSMTRLSSGLKINSAKDDAAGLQIATRQTSQIRGQTQAIKNANDGISIAQTAEGA 81

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1238722499  81 LSEVTANLHRIRDLSLQAANGTYSRSDRASIQEEVDQLKLEINRINDTTRFGSQKLFD 138
Cdd:PRK12802   82 LQESTNILQRMRELAVQSRNDSNDSTDRAALNKEFTTMLDEITRIATSTTLNGKNLLD 139
PRK08026 PRK08026
FliC/FljB family flagellin;
4-131 3.52e-39

FliC/FljB family flagellin;


Pssm-ID: 236140 [Multi-domain]  Cd Length: 529  Bit Score: 142.57  E-value: 3.52e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238722499   4 VSTNLSSLFTQRQLTSVTNATSNSIERLSSGLRINNAEDDAAGMQLSHRITAKINGNAVAIRNANDGISMAQTAEGVLSE 83
Cdd:PRK08026    5 INTNSLSLITQNNINKNQSALSSSIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQAARNANDGISVAQTTEGALSE 84

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1238722499  84 VTANLHRIRDLSLQAANGTYSRSDRASIQEEVDQLKLEINRINDTTRF 131
Cdd:PRK08026   85 INNNLQRVRELTVQAATGTNSQSDLDSIQDEIKSRLDEIDRVSGQTQF 132
FlgL COG1344
Flagellin and related hook-associated protein FlgL [Cell motility];
2-138 6.70e-39

Flagellin and related hook-associated protein FlgL [Cell motility];


Pssm-ID: 440955 [Multi-domain]  Cd Length: 245  Bit Score: 135.76  E-value: 6.70e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238722499   2 LSVSTNLSSLFTQRQLTSVTNATSNSIERLSSGLRINNAEDDAAGMQLSHRITAKINGNAVAIRNANDGISMAQTAEGVL 81
Cdd:COG1344     1 MRISTNMSALNALRNLNRTQSDLAKLQEQLSSGKRINSASDDPAGAAIALRLRSQIRGLEQYQRNANDAISRLQTAEGAL 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1238722499  82 SEVTANLHRIRDLSLQAANGTYSRSDRASIQEEVDQLKLEINRINDTTRFGSQKLFD 138
Cdd:COG1344    81 GEITDILQRARELAVQAANGTLSDEDRAAIAAELEQLLDQLLSIANTTDFNGRYLFA 137
PRK12806 PRK12806
flagellin; Provisional
 4-138 1.71e-37

flagellin; Provisional


Pssm-ID: 183761 [Multi-domain]  Cd Length: 475  Bit Score: 137.51  E-value: 1.71e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238722499   4 VSTNLSSLFTQRQLTSVTNATSNSIERLSSGLRINNAEDDAAGMQLSHRITAKINGNAVAIRNANDGISMAQTAEGVLSE 83
Cdd:PRK12806    5 INTNVASLTAQRNLGVSGNMMQTSIQRLSSGLRINSAKDDAAGLAISQRMTAQIRGMNQAVRNANDGISLAQVAEGAMQE 84

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1238722499  84 VTANLHRIRDLSLQAANGTYSRSDRASIQEEVDQLKLEINRINDTTRFGSQKLFD 138
Cdd:PRK12806   85 TTNILQRMRELSVQAANSTNNSSDRASIQSEISQLKSELERIAQNTEFNGQRILD 139
Flagellin_N pfam00669
Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial ...
 4-138 1.79e-36

Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial flagella. This family includes flagellins and hook associated protein 3. Structurally this family forms an extended helix that interacts with pfam00700.


Pssm-ID: 425809 [Multi-domain]  Cd Length: 139  Bit Score: 126.30  E-value: 1.79e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238722499   4 VSTNLSSLFTQRQLTSVTNATSNSIERLSSGLRINNAEDDAAGMQLSHRITAKINGNAVAIRNANDGISMAQTAEGVLSE 83
Cdd:pfam00669   1 INTNSAALAARSNLNKNQAELSKAQERLSTGLRINSALDDAAGLAISVSLRAQIAGLSQAVRNNSLGIGRLQTAQGALSE 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1238722499  84 VTANLHRIRDLSLQAANGTYSRSDRASIQEEVDQLKLEINRINDTTRFGSQKLFD 138
Cdd:pfam00669  81 VTDILQRMKELAVQASNGGNSDIDRASIQAEIQQLTDELNNIANTTSFNGEYLLA 135
PRK12804 PRK12804
flagellin; Provisional
 2-138 1.66e-30

flagellin; Provisional


Pssm-ID: 183759 [Multi-domain]  Cd Length: 301  Bit Score: 115.48  E-value: 1.66e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238722499   2 LSVSTNLSSLFTQRQLTSVTNATSNSIERLSSGLRINNAEDDAAGMQLSHRITAKINGNAVAIRNANDGISMAQTAEGVL 81
Cdd:PRK12804    1 MRINHNIAALNTLNRLSANNGASQKNMEKLSSGLKINRAGDDAAGLAISEKMRGQIRGLEMASKNAQDGISLIQTAEGAL 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1238722499  82 SEVTANLHRIRDLSLQAAN-GTYSRSDRASIQEEVDQLKLEINRINDTTRFGSQKLFD 138
Cdd:PRK12804   81 TETHSILQRVRELVVQAGNtGTQDGTDLGAIQDEIKALVDEIDGISDRTEFNGKKLLD 138
PRK12807 PRK12807
flagellin; Provisional
 2-143 4.40e-29

flagellin; Provisional


Pssm-ID: 171737 [Multi-domain]  Cd Length: 287  Bit Score: 111.45  E-value: 4.40e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238722499   2 LSVSTNLSSLFTQRQLTSVTNATSNSIERLSSGLRINNAEDDAAGMQLSHRITAKINGNAVAIRNANDGISMAQTAEGVL 81
Cdd:PRK12807    1 MRINTNINSMRTQEYMRQNQDKMNVSMNRLSSGKRINSAADDAAGLAIATRMRARQSGLEKASQNTQDGMSLIRTAESAM 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1238722499  82 SEVTANLHRIRDLSLQAANGTYSRSDRASIQEEVDQLKLEINRINDTTRFGSQKLfdMGDGR 143
Cdd:PRK12807   81 NSVSNILTRMRDIAVQSSNGTNTAENQSALQKEFAELQEQIDYIAKNTEFNDKNL--LAGTG 140
PRK12803 PRK12803
flagellin; Provisional
 4-131 1.18e-25

flagellin; Provisional


Pssm-ID: 183758 [Multi-domain]  Cd Length: 335  Bit Score: 102.96  E-value: 1.18e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238722499   4 VSTNLSSLFTQRQLTSVTNATSNSIERLSSGLRINNAEDDAAGMQLSHRITAKINGNAVAIRNANDGISMAQTAEGVLSE 83
Cdd:PRK12803    3 INHNTSAINASRNNSINAANLSKTQEKLSSGHRINRASDDAAGMGVAGKINAQIRGLSQASRNTSKAINFIQTTEGNLNE 82

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1238722499  84 VTANLHRIRDLSLQAANGTYSRSDRASIQEEVDQLKLEINRINDTTRF 131
Cdd:PRK12803   83 VEKVLVRMKELAVQSGNGTYSDADRGSIQIEIEQLTDEINRIADQAQY 130
PRK12808 PRK12808
flagellin; Provisional
 4-138 7.25e-25

flagellin; Provisional


Pssm-ID: 237212 [Multi-domain]  Cd Length: 476  Bit Score: 102.72  E-value: 7.25e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238722499   4 VSTNLSSLFTQRQLTSVTNATSNSIERLSSGLRINNAEDDAAGMQLSHRITAKINGNAVAIRNANDGISMAQTAEGVLSE 83
Cdd:PRK12808    3 INTNINSMRTQEYMRQNQAKMSNAMDRLSSGKRINNASDDAAGLAIATRMRARESGLGVAANNTQDGMSLIRTADSAMNS 82

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1238722499  84 VTANLHRIRDLSLQAANGTYSRSDRASIQEEVDQLKLEINRINDTTRFGSQKLFD 138
Cdd:PRK12808   83 VSNILLRMRDIANQSANGTNTDKNQAALQKEFAELQKQITYIADNTQFNDKNLLN 137
PRK12805 PRK12805
FliC/FljB family flagellin;
2-156 3.99e-20

FliC/FljB family flagellin;


Pssm-ID: 183760 [Multi-domain]  Cd Length: 287  Bit Score: 87.23  E-value: 3.99e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238722499   2 LSVSTNLSSLFTQRQLTSVTNATSNSIERLSSGLRINNAEDDAAGMQLSHRITAKINGNAVAIRNANDGISMAQTAEGVL 81
Cdd:PRK12805    1 MKVNTNIISLKTQEYLRKNNEGMTQAQERLASGKRINSSLDDAAGLAVVTRMNVKSTGLDAASKNSSMGIDLLQTADSAL 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1238722499  82 SEVTANLHRIRDLSLQAANGTYSRSDRASIQEEVDQLKLEINRINDTTRFGSQKLFDM---GDGRLVDIVERDMINGL 156
Cdd:PRK12805   81 SSMSSILQRMRQLAVQSSNGSFSDEDRKQYTAEFGSLIKELDHVADTTNYNNIKLLDQtatGAATQVSIQASDKANDL 158
PRK12584 PRK12584
flagellin A; Reviewed
 4-136 5.65e-20

flagellin A; Reviewed


Pssm-ID: 237146 [Multi-domain]  Cd Length: 510  Bit Score: 88.81  E-value: 5.65e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238722499   4 VSTNLSSLFTQRQLTSVTNATSNSIERLSSGLRINNAEDDAAGMQLSHRITAKINGNAVAIRNANDGISMAQTAEGVLSE 83
Cdd:PRK12584    5 VNTNINALNAHVQSALTQNALKTSLEKLSSGLRINKAADDASGMTIADSLRSQASSLGQAIANTNDGMGIIQVADKAMDE 84

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1238722499  84 VTANLHRIRDLSLQAANGTYSRSDRASIQEEVDQLKLEINRINDTTRFGSQKL 136
Cdd:PRK12584   85 QLKILDTIKVKATQAAQDGQTTESRKAIQSDIVRLIQGLDNIGNTTTYNGQAL 137
flagell_flgL TIGR02550
flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated ...
 4-119 1.20e-17

flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated proteins designated FlgL (or HAP3) encoded in bacterial flagellar operons. A N-terminal region of about 150 residues and a C-terminal region of about 85 residues are conserved. Members show considerable length heterogeneity between these two well-conserved terminal regions; the seed alignment 486 columns, 393 of which are represented in the model, while members of this family are from 287 to over 500 residues in length. This model distinguishes FlgL from the flagellin gene product FliC. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274195 [Multi-domain]  Cd Length: 306  Bit Score: 80.47  E-value: 1.20e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238722499   4 VSTNLSSLFTQRQLTSVTNATSNSIERLSSGLRINNAEDDAAGMQLSHRITAKINGNAVAIRNANDGISMAQTAEGVLSE 83
Cdd:TIGR02550   2 VSTNMLYNNSLNSITNNQSRLAKLQQQLSSGKRINKPSDDPVAAAQALNLNQELAQLEQYQKNIDDAKNWLSQTETALSS 81

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1238722499  84 VTANLHRIRDLSLQAANGTYSRSDRASIQEEVDQLK 119
Cdd:TIGR02550  82 VGDVLQRARELAVQAANGTLSDDDRKAIAKEIKQLL 117
PRK13588 PRK13588
flagellin B; Provisional
 4-136 3.88e-17

flagellin B; Provisional


Pssm-ID: 237440 [Multi-domain]  Cd Length: 514  Bit Score: 80.68  E-value: 3.88e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238722499   4 VSTNLSSLFTQRQLTSVTNATSNSIERLSSGLRINNAEDDAAGMQLSHRITAKINGNAVAIRNANDGISMAQTAEGVLSE 83
Cdd:PRK13588    5 INTNIAALNAHAVGVQNNRDLSSSLEKLSSGLRINKAADDASGMAIADSLRSQSANLGQAIRNANDAIGMVQTADKAMDE 84

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1238722499  84 VTANLHRIRDLSLQAANGTYSRSDRASIQEEVDQLKLEINRINDTTRFGSQKL 136
Cdd:PRK13588   85 QIKILDTIKTKAVQAAQDGQTLESRRALQSDIQRLLEELDNIANTTSFNGQQM 137
PRK08411 PRK08411
flagellin; Reviewed
 4-136 1.15e-15

flagellin; Reviewed


Pssm-ID: 236260 [Multi-domain]  Cd Length: 572  Bit Score: 76.18  E-value: 1.15e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238722499   4 VSTNLSSLFTQRQLTSVTNATSNSIERLSSGLRINNAEDDAAGMQLSHRITAKINGNAVAIRNANDGISMAQTAEGVLSE 83
Cdd:PRK08411    5 INTNVAALNAKANSDLNAKSLDASLSRLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADKAMDE 84

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1238722499  84 VTANLHRIRDLSLQAANGTYSRSDRASIQEEVDQLKLEINRINDTTRFGSQKL 136
Cdd:PRK08411   85 QLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQL 137
PRK13589 PRK13589
flagellin A;
4-137 1.70e-15

flagellin A;


Pssm-ID: 172158 [Multi-domain]  Cd Length: 576  Bit Score: 75.83  E-value: 1.70e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238722499   4 VSTNLSSLFTQRQLTSVTNATSNSIERLSSGLRINNAEDDAAGMQLSHRITAKINGNAVAIRNANDGISMAQTAEGVLSE 83
Cdd:PRK13589    5 INTNIGALNAHANSVVNSRELDKSLSRLSSGLRINSAADDASGMAIADSLRSQAATLGQAINNGNDAIGILQTADKAMDE 84

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1238722499  84 VTANLHRIRDLSLQAANGTYSRSDRASIQEEVDQLKLEINRINDTTRFGSQKLF 137
Cdd:PRK13589   85 QLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLL 138
PRK06663 PRK06663
flagellar hook-associated protein 3;
1-128 3.99e-15

flagellar hook-associated protein 3;


Pssm-ID: 180648 [Multi-domain]  Cd Length: 419  Bit Score: 74.34  E-value: 3.99e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238722499   1 MLSVSTNLSSLFTQRQLTSVTNATSNSIERLSSGLRINNAEDDAAGMQLSHRITAKINGNAVAIRNANDGISMAQTAEGV 80
Cdd:PRK06663    1 IMRVSHPMQYNNLKSSLRRQESKMTKLQNQLSTGQRIQKLRDDPTAATHSIRYKSRLFKLDRYQKNIDDGKDRLRYAEGY 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1238722499  81 LSEVTANLHRIRDLSLQAANGTYSRSDRASIQEEVDQLKLEINRINDT 128
Cdd:PRK06663   81 LQSITNILQRARELAVQGANGTYQADDKKKIAKEIDELLEDLVDIANA 128
flgL PRK07701
flagellar hook-associated protein FlgL; Validated
 29-129 4.07e-13

flagellar hook-associated protein FlgL; Validated


Pssm-ID: 181087 [Multi-domain]  Cd Length: 298  Bit Score: 67.71  E-value: 4.07e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238722499  29 ERLSSGLRINNAEDDAAGMQLSHRITAKINGNAVAIRNANDGISMAQTAEGVLSEVTANLHRIRDLSLQAANGTYSRSDR 108
Cdd:PRK07701   28 EQLSTGKKITRPSDDPVVAMKSLRYRTDLAEVEQYQKNASDAKSWLENTESALDQATDILQRARELAVQAANGTNTQTDR 107

                          90       100
                  ....*....|....*....|.
gi 1238722499 109 ASIQEEVDQLKLEINRINDTT 129
Cdd:PRK07701  108 QAIAQEIEQLKEQLIQIANTQ 128
flgL PRK08870
flagellar hook-associated protein FlgL; Reviewed
 9-122 2.12e-09

flagellar hook-associated protein FlgL; Reviewed


Pssm-ID: 236345 [Multi-domain]  Cd Length: 404  Bit Score: 57.23  E-value: 2.12e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238722499   9 SSLFTQRQLTSVTN---ATSNSIERLSSGLRINNAEDDAAGMQLSHRITAKINGNAVAIRNANDGISMAQTAEGVLSEVT 85
Cdd:PRK08870    5 TAQMYQQSVNSMLDqqsQLSQLQQQLSSGKKLLTPSDDPVAAAQAVNLSQQSALLDQYTKNINLARNRLQQEESTLGSVE 84

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1238722499  86 ANLHRIRDLSLQAANGTYSRSDRASIQEEVDQLKLEI 122
Cdd:PRK08870   85 DLLQRARELVVQAGNGSLSDSDRQAIATELQGLRDQL 121
flgL PRK12717
flagellar hook-associated protein 3;
9-122 1.42e-08

flagellar hook-associated protein 3;


Pssm-ID: 171679 [Multi-domain]  Cd Length: 523  Bit Score: 55.13  E-value: 1.42e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238722499   9 SSLFTQRQLTSVTNATSNSI---ERLSSGLRINNAEDDAAG----MQLSHR--ITAKINGNAVAIRNandgiSMAQTaEG 79
Cdd:PRK12717    5 TSQFYESSAANYQRNYSNLVktqEQASSGIRIQTAADDPVGaarlLQLQQQqaMLDQYSGNITTIKN-----SLTQE-ES 78

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1238722499  80 VLSEVTANLHRIRDLSLQAANGTYSRSDRASIQEEVDQLKLEI 122
Cdd:PRK12717   79 TLTSINDTLQRARELAVSAGNGGLTDADRKAIASELKQIEAQL 121
flgL PRK07192
flagellar hook-associated protein FlgL; Reviewed
 4-114 1.15e-04

flagellar hook-associated protein FlgL; Reviewed


Pssm-ID: 235956 [Multi-domain]  Cd Length: 305  Bit Score: 42.70  E-value: 1.15e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238722499   4 VSTNLSSLFTQRQLTSVTNATSNSIERLSSGLRINNAEDDAAGMQLSHRITAKINGNAVAIRNANDGISMAQTAEGVLSE 83
Cdd:PRK07192    3 ISTNTLYSTMLRSIQQLQAGLGKLQQQMSTGKRILTPSDDPIASARLLELSREQSNNSQYADNIANLSNSLNNQEGHLSG 82

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1238722499  84 VTANLHRIRDLSLQAANGTYSRSDRASIQEE 114
Cdd:PRK07192   83 VNDQLQSIRSLLVAAGNGSLSDEDRSAMATE 113
flgL PRK12718
flagellar hook-associated protein FlgL; Provisional
 9-137 2.21e-04

flagellar hook-associated protein FlgL; Provisional


Pssm-ID: 79176 [Multi-domain]  Cd Length: 510  Bit Score: 42.10  E-value: 2.21e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238722499   9 SSLFTQRQLTSVTN---ATSNSIERLSSGLRINNAEDD--AAGMQLSHRITAKINGNAVAIRNANDGISMAQTaeGVLSE 83
Cdd:PRK12718    5 TALIYQNGLNGVLNqeaAMARLQEQLSSGRRVLTPADDplAAALAVNVSQTSSMNSNYDANRKQAEQALGAQT--NTLQS 82

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1238722499  84 VTANLHRIRDLSLQAANGTYSRSDRASIQEEVDQLKLEINRINDTTRFGSQKLF 137
Cdd:PRK12718   83 VVKNMQEMLKRVVEAGNGTMSDADRQALVIALKGAREELVGLANATDGNGQYLF 136
flgL PRK08027
flagellar hook-filament junction protein FlgL;
4-129 9.49e-04

flagellar hook-filament junction protein FlgL;


Pssm-ID: 181202 [Multi-domain]  Cd Length: 317  Bit Score: 39.73  E-value: 9.49e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238722499   4 VSTNLsslFTQRQLTSVTNATSNSI---ERLSSGLRINNAEDD---AAGMQLSHRITAKINGNAVAIRNANDGISMAqta 77
Cdd:PRK08027    3 LSTQM---MYQQNMRGITNSQAEWMkygEQMSTGKRVVNPSDDpiaASQAVVLSQAQAQNSQYTLARTFATQKVSLE--- 76

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1238722499  78 EGVLSEVTANLHRIRDLSLQAANGTYSRSDRASIQEEVDQLKLEINRINDTT 129
Cdd:PRK08027   77 ESVLSQVTTAIQNAQEKIVYAGNGTLSDDDRASLATDLQGLRDQLLNLANTT 128
flgL PRK08073
flagellar hook-associated protein 3;
2-118 1.79e-03

flagellar hook-associated protein 3;


Pssm-ID: 181222 [Multi-domain]  Cd Length: 287  Bit Score: 38.81  E-value: 1.79e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238722499   2 LSVSTNLSSLFTQRQLTSVTNATSNSIERLSSGLRINNAEDD--AAGMQLS-HRITAKINGNAVAIRNANdgiSMAQTAE 78
Cdd:PRK08073    1 MRVSTFQNANWAKNQLMDLNVQQQYHRNQVTSGKKNLSMSEDplAASKSFAiQHSLANIEQMQKDVADSK---NVLNQTE 77

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1238722499  79 GVLSEVTANLHRIRDLSLQAANGTYSRSDRASIQEEVDQL 118
Cdd:PRK08073   78 NTLSGMSKSLTRVDQLVLQALNGTNDEKELKAIGAEIDQI 117
flgL PRK08412
flagellar hook-associated protein FlgL; Validated
 14-137 3.51e-03

flagellar hook-associated protein FlgL; Validated


Pssm-ID: 236261 [Multi-domain]  Cd Length: 827  Bit Score: 38.65  E-value: 3.51e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238722499  14 QRQLTSVTNATSNSIerlSSGLRINNAEDDAAGMQLSHRITAKINGNAVAIRNANDGISMAQTAEGVLSEVTANLHRIRD 93
Cdd:PRK08412   16 QNALQNKLNDVNTQI---ASGLKIQYGYQDSDVYNQNLKLQYEENTLDQGIDVASSAYTFTLNTDKALNEFSKTMEAFKT 92

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1238722499  94 LSLQAANGTYSRSDRASIQEEVDQLKLEINRINDTTrFGSQKLF 137
Cdd:PRK08412   93 KLIQAANDVHSETSREAIANDLEALKEHMINLANTS-IGGEFLF 135
PRK14692 PRK14692
flagellar hook-associated protein FlgL;
29-137 8.60e-03

flagellar hook-associated protein FlgL;


Pssm-ID: 173155 [Multi-domain]  Cd Length: 749  Bit Score: 37.25  E-value: 8.60e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238722499  29 ERLSSGLRINNAEDDAAGMQLSHRITAKINGNAVAIRNANDGISMAQTAEGVLSEVTANLHRIRDLSLQAANGTYSRSDR 108
Cdd:PRK14692   28 QQLASGLKIQNSYEDASTYIDNTRLEYEIKTLEQVKESTSRAQEMTQNSMKALQDMVKLLEDFKVKVTQAASDSNSQTSR 107

                          90       100
                  ....*....|....*....|....*....
gi 1238722499 109 ASIQEEVDQLKLEINRINDTTRFGsQKLF 137
Cdd:PRK14692  108 EAIAKELERIKESIVQLANTSVNG-QYLF 135
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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