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Conserved domains on  [gi|1224540019|ref|WP_092560591|]
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flagellin [Anaeromicropila populeti]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK12804 super family cl32830
flagellin; Provisional
 1-149 4.21e-46

flagellin; Provisional


The actual alignment was detected with superfamily member PRK12804:

Pssm-ID: 183759 [Multi-domain]  Cd Length: 301  Bit Score: 167.87  E-value: 4.21e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019   1 MVIQHNLSAMNSGRQVGITAGQQQKCISKLSSGYRINQAADNAAGLSISEKMRAQIRGLDRASQNMQDSISLIQTAEGAL 80
Cdd:PRK12804    1 MRINHNIAALNTLNRLSANNGASQKNMEKLSSGLKINRAGDDAAGLAISEKMRGQIRGLEMASKNAQDGISLIQTAEGAL 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019  81 SEVQSVVQRIRELSVQASND-TNVTADRTSIQDEITELVGEVTRISEQTEFNGMKLLNGNLEASTTAATP 149
Cdd:PRK12804   81 TETHSILQRVRELVVQAGNTgTQDGTDLGAIQDEIKALVDEIDGISDRTEFNGKKLLDGTFKPAAPAAGT 150
flagella_HExxH super family cl41492
flagellinolysin; Flagellinolysin is a variant form of bacterial flagellin in with the normally ...
 110-462 9.26e-30

flagellinolysin; Flagellinolysin is a variant form of bacterial flagellin in with the normally hypervariable central region contains an M9 (MEROPS classification) family metalloprotease domain, with its signature HExxH motif. The founding member of the family, from the pathogen Clostridium haemolyticum, shows EDTA-sensitive metalloprotease activity. The large count of flagellin subunits in a complete flagellum means the capacity of flagellinolysin to perform as a protease may have implications for host-pathogen relationships.


The actual alignment was detected with superfamily member NF033876:

Pssm-ID: 468217  Cd Length: 380  Bit Score: 122.38  E-value: 9.26e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 110 IQDEITELVGEVTRISEQTEFNGMKLLNGNLEASTTAATPLvslanhpeaynltlaeavdsigenevglifteesdyvtt 189
Cdd:NF033876    1 LQKEINQLKQEIDRIAETTEFNGKKLFDQGASVGSADPDKQ--------------------------------------- 41

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 190 qtnagsststaygtDIMDTLETEIVPQAVQSLLDTYSGALGylaGSSVGIGLKLYSDTTSTLAYVSCGATVGGSGSTLSf 269
Cdd:NF033876   42 --------------AILDGLKSGWLENAEDLIKEYYGLTAD---GADLTVNLEYTDGAGGTLAYVSSGSGGGGKGGNLT- 103

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 270 tlaVNVNSLNFTAGELTDDSRED--LEATIAHEMVHAFMDESVTAGMLgyngstfvtayPTWFKEGMAQTASGGSDWVKy 347
Cdd:NF033876  104 ---LTIDMADFSPANLPNGGTAPqyLDRTIAHEMVHAVMGRTMNFSSL-----------PTWFIEGTAEFIHGADERLA- 168

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 348 GLGITAAATDAQIQSAFSGLTTNTNEANYATGYLACMylgylaggggTVNASTIAAGDD---KILQSLVS--GKSLDQTI 422
Cdd:NF033876  169 ADLAGGTSDAAGVAALFNGGAWTSTSADYSAGYAAVR----------YLHDQIKAAGGGgikDIMQYLKAnaGSTLDQAL 238

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|..
gi 1224540019 423 ADYTKYSGYT--DFTTNLQNDTEAydFVRNLMSAIGTGRGSI 462
Cdd:NF033876  239 AAATGGAFATeaDFLADFNANGAA--FIKNYMDLTNADTGAI 278
PRK12804 super family cl32830
flagellin; Provisional
 834-961 8.68e-27

flagellin; Provisional


The actual alignment was detected with superfamily member PRK12804:

Pssm-ID: 183759 [Multi-domain]  Cd Length: 301  Bit Score: 111.63  E-value: 8.68e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 834 LNLQIGANQGQTMNLSIEGMSSADLGLDK-------------VKTDTFQNAQTS--------ITLCDNANKKVSEVRSRL 892
Cdd:PRK12804  153 LTFQIGANAAQQLSVNIEAMSADALGVKDtdgtlvtgksvsdIDVTKFANAAAAadggfddqLKIVDGAIKQVSDQRSKL 232

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1224540019 893 GAYQNRLEHAISNTDNTHENLQAAESRIRDLDIEHEMVQYSIKSILLQSGQSMLAQANQQANSILSILQ 961
Cdd:PRK12804  233 GAVQNRLEHTINNLGASGENLTAAESRIRDVDMAKEMSEFTKNNILSQASQAMLAQANQQPQNVLQLLR 301
PRK08026 super family cl35635
FliC/FljB family flagellin;
605-961 5.94e-13

FliC/FljB family flagellin;


The actual alignment was detected with superfamily member PRK08026:

Pssm-ID: 236140 [Multi-domain]  Cd Length: 529  Bit Score: 72.47  E-value: 5.94e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 605 AGSTLTLSGNAAANQISGAGTLVNTGTANMNMQGINVVNSgtiTGDINSTGTNGISNTGTINGNAGCESGGVIENWGKIT 684
Cdd:PRK08026  182 ANTAATVSDLTAAGATLDTTGLYDVKTKNAALTTADALAK---LGDGDKVTATATGGDYTYNAKSGKYQAADLAATLTPD 258

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 685 GTSTGNVKHYASSFTRNIippskvsvgeNLQGGDALTSTVSVNYNGTSTTLTGTWVVTDKDGNVvADPASITMQEGDSYS 764
Cdd:PRK08026  259 VGGTAGASYTIKDGTYEV----------NVDSDGKITLGGSALYIDATGNLTTNNAGAATKATL-DALKKTASEGAATAK 327

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 765 YALTFDGSPYDICFEANTKSALTEVSMAQTPDGGTISGTGGQltyIYTVSPNTVSGGPTAGGGSAAQGGLNLQIGANQ-- 842
Cdd:PRK08026  328 AALAAAGVTVADGVTAKTVKMSYTDKNGKVIDGGYAVKTGDD---YYAADYDEITGAISATTTYYTAKDGTTKTAANKlg 404

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 843 ---GQTMNLSIEGM----SSADLGLDK-VKTDTFQNAQTSItlcDNANKKVSEVRSRLGAYQNRLEHAISNTDNTHENLQ 914
Cdd:PRK08026  405 gadGKTEVVTIDGKtyvaSDGKQTTLAeAAATTTENPLAAL---DAAIASIDKFRSSLGAVQNRLDSAVTNLNNTTTNLS 481

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*..
gi 1224540019 915 AAESRIRDLDIEHEMVQYSIKSILLQSGQSMLAQANQQANSILSILQ 961
Cdd:PRK08026  482 EAQSRIQDADYATEVSNMSKAQIIQQAGNSVLAKANQVPQQVLSLLQ 528
 
Name Accession Description Interval E-value
PRK12804 PRK12804
flagellin; Provisional
 1-149 4.21e-46

flagellin; Provisional


Pssm-ID: 183759 [Multi-domain]  Cd Length: 301  Bit Score: 167.87  E-value: 4.21e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019   1 MVIQHNLSAMNSGRQVGITAGQQQKCISKLSSGYRINQAADNAAGLSISEKMRAQIRGLDRASQNMQDSISLIQTAEGAL 80
Cdd:PRK12804    1 MRINHNIAALNTLNRLSANNGASQKNMEKLSSGLKINRAGDDAAGLAISEKMRGQIRGLEMASKNAQDGISLIQTAEGAL 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019  81 SEVQSVVQRIRELSVQASND-TNVTADRTSIQDEITELVGEVTRISEQTEFNGMKLLNGNLEASTTAATP 149
Cdd:PRK12804   81 TETHSILQRVRELVVQAGNTgTQDGTDLGAIQDEIKALVDEIDGISDRTEFNGKKLLDGTFKPAAPAAGT 150
FlgL COG1344
Flagellin and related hook-associated protein FlgL [Cell motility];
1-171 8.73e-40

Flagellin and related hook-associated protein FlgL [Cell motility];


Pssm-ID: 440955 [Multi-domain]  Cd Length: 245  Bit Score: 147.70  E-value: 8.73e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019   1 MVIQHNLSAMNSGRQVGITAGQQQKCISKLSSGYRINQAADNAAGLSISEKMRAQIRGLDRASQNMQDSISLIQTAEGAL 80
Cdd:COG1344     1 MRISTNMSALNALRNLNRTQSDLAKLQEQLSSGKRINSASDDPAGAAIALRLRSQIRGLEQYQRNANDAISRLQTAEGAL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019  81 SEVQSVVQRIRELSVQASNDTNVTADRTSIQDEITELVGEVTRISEQTEFNGMKLLNGNLEASTTAATPLVSLANHPEAY 160
Cdd:COG1344    81 GEITDILQRARELAVQAANGTLSDEDRAAIAAELEQLLDQLLSIANTTDFNGRYLFAGTATDTPPFQVDYQGDAGQRTAA 160

                         170
                  ....*....|.
gi 1224540019 161 NLTLAEAVDSI 171
Cdd:COG1344   161 LGALDAALDNV 171
Flagellin_N pfam00669
Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial ...
 3-139 1.60e-34

Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial flagella. This family includes flagellins and hook associated protein 3. Structurally this family forms an extended helix that interacts with pfam00700.


Pssm-ID: 425809 [Multi-domain]  Cd Length: 139  Bit Score: 128.61  E-value: 1.60e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019   3 IQHNLSAMNSGRQVGITAGQQQKCISKLSSGYRINQAADNAAGLSISEKMRAQIRGLDRASQNMQDSISLIQTAEGALSE 82
Cdd:pfam00669   1 INTNSAALAARSNLNKNQAELSKAQERLSTGLRINSALDDAAGLAISVSLRAQIAGLSQAVRNNSLGIGRLQTAQGALSE 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1224540019  83 VQSVVQRIRELSVQASNDTNVTADRTSIQDEITELVGEVTRISEQTEFNGMKLLNGN 139
Cdd:pfam00669  81 VTDILQRMKELAVQASNGGNSDIDRASIQAEIQQLTDELNNIANTTSFNGEYLLAGI 137
flagella_HExxH NF033876
flagellinolysin; Flagellinolysin is a variant form of bacterial flagellin in with the normally ...
 110-462 9.26e-30

flagellinolysin; Flagellinolysin is a variant form of bacterial flagellin in with the normally hypervariable central region contains an M9 (MEROPS classification) family metalloprotease domain, with its signature HExxH motif. The founding member of the family, from the pathogen Clostridium haemolyticum, shows EDTA-sensitive metalloprotease activity. The large count of flagellin subunits in a complete flagellum means the capacity of flagellinolysin to perform as a protease may have implications for host-pathogen relationships.


Pssm-ID: 468217  Cd Length: 380  Bit Score: 122.38  E-value: 9.26e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 110 IQDEITELVGEVTRISEQTEFNGMKLLNGNLEASTTAATPLvslanhpeaynltlaeavdsigenevglifteesdyvtt 189
Cdd:NF033876    1 LQKEINQLKQEIDRIAETTEFNGKKLFDQGASVGSADPDKQ--------------------------------------- 41

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 190 qtnagsststaygtDIMDTLETEIVPQAVQSLLDTYSGALGylaGSSVGIGLKLYSDTTSTLAYVSCGATVGGSGSTLSf 269
Cdd:NF033876   42 --------------AILDGLKSGWLENAEDLIKEYYGLTAD---GADLTVNLEYTDGAGGTLAYVSSGSGGGGKGGNLT- 103

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 270 tlaVNVNSLNFTAGELTDDSRED--LEATIAHEMVHAFMDESVTAGMLgyngstfvtayPTWFKEGMAQTASGGSDWVKy 347
Cdd:NF033876  104 ---LTIDMADFSPANLPNGGTAPqyLDRTIAHEMVHAVMGRTMNFSSL-----------PTWFIEGTAEFIHGADERLA- 168

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 348 GLGITAAATDAQIQSAFSGLTTNTNEANYATGYLACMylgylaggggTVNASTIAAGDD---KILQSLVS--GKSLDQTI 422
Cdd:NF033876  169 ADLAGGTSDAAGVAALFNGGAWTSTSADYSAGYAAVR----------YLHDQIKAAGGGgikDIMQYLKAnaGSTLDQAL 238

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|..
gi 1224540019 423 ADYTKYSGYT--DFTTNLQNDTEAydFVRNLMSAIGTGRGSI 462
Cdd:NF033876  239 AAATGGAFATeaDFLADFNANGAA--FIKNYMDLTNADTGAI 278
PRK12804 PRK12804
flagellin; Provisional
 834-961 8.68e-27

flagellin; Provisional


Pssm-ID: 183759 [Multi-domain]  Cd Length: 301  Bit Score: 111.63  E-value: 8.68e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 834 LNLQIGANQGQTMNLSIEGMSSADLGLDK-------------VKTDTFQNAQTS--------ITLCDNANKKVSEVRSRL 892
Cdd:PRK12804  153 LTFQIGANAAQQLSVNIEAMSADALGVKDtdgtlvtgksvsdIDVTKFANAAAAadggfddqLKIVDGAIKQVSDQRSKL 232

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1224540019 893 GAYQNRLEHAISNTDNTHENLQAAESRIRDLDIEHEMVQYSIKSILLQSGQSMLAQANQQANSILSILQ 961
Cdd:PRK12804  233 GAVQNRLEHTINNLGASGENLTAAESRIRDVDMAKEMSEFTKNNILSQASQAMLAQANQQPQNVLQLLR 301
FlgL COG1344
Flagellin and related hook-associated protein FlgL [Cell motility];
872-961 3.51e-18

Flagellin and related hook-associated protein FlgL [Cell motility];


Pssm-ID: 440955 [Multi-domain]  Cd Length: 245  Bit Score: 84.92  E-value: 3.51e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 872 QTSITLCDNANKKVSEVRSRLGAYQNRLEHAISNTDNTHENLQAAESRIRDLDIEHEMVQYSIKSILLQSGQSMLAQANQ 951
Cdd:COG1344   158 TAALGALDAALDNVSSARAELGARQNRLESAINNLSDLSENLTAALSRLEDADMAEAITRLTKLQTLLQAALAALAQANQ 237

                          90
                  ....*....|
gi 1224540019 952 QanSILSILQ 961
Cdd:COG1344   238 L--SLLDLLR 245
flagell_flgL TIGR02550
flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated ...
 1-229 3.01e-17

flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated proteins designated FlgL (or HAP3) encoded in bacterial flagellar operons. A N-terminal region of about 150 residues and a C-terminal region of about 85 residues are conserved. Members show considerable length heterogeneity between these two well-conserved terminal regions; the seed alignment 486 columns, 393 of which are represented in the model, while members of this family are from 287 to over 500 residues in length. This model distinguishes FlgL from the flagellin gene product FliC. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274195 [Multi-domain]  Cd Length: 306  Bit Score: 83.55  E-value: 3.01e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019   1 MVIQHNLSAMNSGrQVGITAGQQQkciskLSSGYRINQAADNAAGLSISEKMRAQIRGLDRASQNMQDSISLIQTAEGAL 80
Cdd:TIGR02550   6 MLYNNSLNSITNN-QSRLAKLQQQ-----LSSGKRINKPSDDPVAAAQALNLNQELAQLEQYQKNIDDAKNWLSQTETAL 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019  81 SEVQSVVQRIRELSVQASNDTNVTADRTSIQDEITELVGEVTRISEQTEFNGMKLLNGNleASTTAatPLVSLANHPEAY 160
Cdd:TIGR02550  80 SSVGDVLQRARELAVQAANGTLSDDDRKAIAKEIKQLLDQLVNLANTKDGNGRYIFSGT--KTDTP--PFSEDEGGEVTY 155

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1224540019 161 N------LTLAEAVDSIGENEVGLIFTEESdyVTTQTNAGSSTSTAYgtDIMDTLETEIVPQAVQSLLDTYSGAL 229
Cdd:TIGR02550 156 NgdggqrKVQVASNRSMPIGHPGDKVFMSI--PNNDKSVFSTGDDLI--DALKKLEDALSSGDAKAALSASLNDL 226
Flagellin_C pfam00700
Bacterial flagellin C-terminal helical region; Flagellins polymerize to form bacterial ...
 875-960 1.02e-16

Bacterial flagellin C-terminal helical region; Flagellins polymerize to form bacterial flagella. There is some similarity between this family and pfam00669, particularly the motif NRFXSXIXXL. It has been suggested that these two regions associate and this is shown to be correct as structurally this family forms an extended helix that interacts with pfam00700.


Pssm-ID: 425827 [Multi-domain]  Cd Length: 86  Bit Score: 75.83  E-value: 1.02e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 875 ITLCDNANKKVSEVRSRLGAYQNRLEHAISNTDNTHENLQAAESRIRDLDIEHEMVQYSIKSILLQSGQSMLAQANQQAN 954
Cdd:pfam00700   1 LDLIDEAITDLDSVRADLGAVQNRLESATTNLNNQQDNLKAAISRIEDVDPAEESTRMTKLQIQIQASYSLLSQANQLPQ 80


                  ....*.
gi 1224540019 955 SILSIL 960
Cdd:pfam00700  81 SLLNLL 86
PRK08026 PRK08026
FliC/FljB family flagellin;
605-961 5.94e-13

FliC/FljB family flagellin;


Pssm-ID: 236140 [Multi-domain]  Cd Length: 529  Bit Score: 72.47  E-value: 5.94e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 605 AGSTLTLSGNAAANQISGAGTLVNTGTANMNMQGINVVNSgtiTGDINSTGTNGISNTGTINGNAGCESGGVIENWGKIT 684
Cdd:PRK08026  182 ANTAATVSDLTAAGATLDTTGLYDVKTKNAALTTADALAK---LGDGDKVTATATGGDYTYNAKSGKYQAADLAATLTPD 258

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 685 GTSTGNVKHYASSFTRNIippskvsvgeNLQGGDALTSTVSVNYNGTSTTLTGTWVVTDKDGNVvADPASITMQEGDSYS 764
Cdd:PRK08026  259 VGGTAGASYTIKDGTYEV----------NVDSDGKITLGGSALYIDATGNLTTNNAGAATKATL-DALKKTASEGAATAK 327

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 765 YALTFDGSPYDICFEANTKSALTEVSMAQTPDGGTISGTGGQltyIYTVSPNTVSGGPTAGGGSAAQGGLNLQIGANQ-- 842
Cdd:PRK08026  328 AALAAAGVTVADGVTAKTVKMSYTDKNGKVIDGGYAVKTGDD---YYAADYDEITGAISATTTYYTAKDGTTKTAANKlg 404

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 843 ---GQTMNLSIEGM----SSADLGLDK-VKTDTFQNAQTSItlcDNANKKVSEVRSRLGAYQNRLEHAISNTDNTHENLQ 914
Cdd:PRK08026  405 gadGKTEVVTIDGKtyvaSDGKQTTLAeAAATTTENPLAAL---DAAIASIDKFRSSLGAVQNRLDSAVTNLNNTTTNLS 481

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*..
gi 1224540019 915 AAESRIRDLDIEHEMVQYSIKSILLQSGQSMLAQANQQANSILSILQ 961
Cdd:PRK08026  482 EAQSRIQDADYATEVSNMSKAQIIQQAGNSVLAKANQVPQQVLSLLQ 528
COG4625 COG4625
Uncharacterized conserved protein, contains a C-terminal beta-barrel porin domain [Function ...
 347-873 5.46e-04

Uncharacterized conserved protein, contains a C-terminal beta-barrel porin domain [Function unknown];


Pssm-ID: 443664 [Multi-domain]  Cd Length: 900  Bit Score: 44.00  E-value: 5.46e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 347 YGLGITAAATDAQIQSAFSGLTTNTNEANYATGYLACMYLGYLAGGGGTVNASTIAAGDDKILQSLVSGKSLDQTIADYT 426
Cdd:COG4625    12 GGGGGTGGGGAGGGGGAGGGAGGGGAGGGGGGGGGGGGAGGGGGGGGTGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGTG 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 427 KYSGYTDFTTNLQNDTEAYDFVRNLMSAIGTGRGSIITGNLAETNILADASITDLALFKLNTTNDRVKNLYPSEVNVFSG 506
Cdd:COG4625    92 GVGGGGGGGGGGGGGGGGGGGGGGGGSAGGGGGGAGGAGGGGGGGAGGGGGGGGGGGAGGGGGGGAGGAGGGGGGGGGGG 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 507 GATTASGTKAVAEAPEAPPVGGTSGPSSTIINLSDLSNVDFANINGIEYDAGTNTITITGDGTFAFTGSNAGTNVVVNSG 586
Cdd:COG4625   172 GGGGGGGGGGGGGGGGGGGGGNGGGGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGG 251

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 587 VKAKISAENIQCQEIILNAGSTLTLSGNAAANQISGAGTLVNTGTANMNMQGINVVNSGTITGDINSTGTNGISNTGTIN 666
Cdd:COG4625   252 GGGGGGNGGGGGAGGGGGGGGGGSGGGGGGGGGGGSGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG 331

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 667 GNAGCESGGVIENWGKITGTSTGNVKHYASSFTRNIIPPSKVSVGENLQGGDALTSTVSVNYNGTSTTLTGTWVVTDKDG 746
Cdd:COG4625   332 GGAGGGGGSGGAGAGGGGAGGGGAGGGGGGGTGGGGGGGGGGGGGSGGGGAGGGGGSGGGGGGGAGGGGGGGGAGGTGGG 411

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 747 NVVADPASITMQEGDSYSYALTFDGSPYDICFEANTKSALTEVSMAQTPDGGTISGTGGQLTYIYTVSPNTVSGGPTAGG 826
Cdd:COG4625   412 GAGGGGGAAGGGGGGTGAGGGGGGGGTGAGGGGATGGGGGGGGGAGGSGGGAGAGGGSGSGAGTLTLTGNNTYTGTTTVN 491

                         490       500       510       520       530
                  ....*....|....*....|....*....|....*....|....*....|
gi 1224540019 827 G---SAAQGGLNLQIGANQGQTMNLSIEGMSSADLGLDKVKTDTFQNAQT 873
Cdd:COG4625   492 GggnYTQSAGSTLAVEVDAANSDRLVVTGTATLNGGTVVVLAGGYAPGTT 541
COG4625 COG4625
Uncharacterized conserved protein, contains a C-terminal beta-barrel porin domain [Function ...
 184-670 1.59e-03

Uncharacterized conserved protein, contains a C-terminal beta-barrel porin domain [Function unknown];


Pssm-ID: 443664 [Multi-domain]  Cd Length: 900  Bit Score: 42.46  E-value: 1.59e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 184 SDYVTTQTNAGSSTSTAYGTDIMDTLETEIVPQAVQSLLDTYSGALGYLAGSSVGIGLKLYSDTTSTLAYVSCGATVGGS 263
Cdd:COG4625     7 GGGGGGGGGGTGGGGAGGGGGAGGGAGGGGAGGGGGGGGGGGGAGGGGGGGGTGGGGGGGGGGGGGGAGGGGGGGGGGGG 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 264 GSTLSFTLAVNVNSLNFTAGELTDDSREDLEATIAHEMVHAFMDESVTAGMLGYNGSTFVTAYPTWFKEGMAQTASGGSD 343
Cdd:COG4625    87 GGGTGGVGGGGGGGGGGGGGGGGGGGGGGGGSAGGGGGGAGGAGGGGGGGAGGGGGGGGGGGAGGGGGGGAGGAGGGGGG 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 344 WVKYGLGITAAATDAQIQSAFSGLTTNTNEANYATGYLACMYLGYLAGGGGTVNASTIAAGDDKILQSLVSGKSLDQTIA 423
Cdd:COG4625   167 GGGGGGGGGGGGGGGGGGGGGGGGGGNGGGGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 424 DYTKYSGYTDFTTNLQNDTEAYDFVRNLMSAIGTGRGSIITGNLAETNILADASITDLALFKLNTTNDRVKNLYPSEVNV 503
Cdd:COG4625   247 GAGGGGGGGGGNGGGGGAGGGGGGGGGGSGGGGGGGGGGGSGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG 326

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 504 FSGGATTASGTKAVAEAPEAPPVGGTSGPSSTIINLSDLSNVDFANINGIEYDAGTNTITITGDGTFAFTGSNAGTNVVV 583
Cdd:COG4625   327 GGGGGGGAGGGGGSGGAGAGGGGAGGGGAGGGGGGGTGGGGGGGGGGGGGSGGGGAGGGGGSGGGGGGGAGGGGGGGGAG 406

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 584 NSGVKAKISAENIQCQEIILNAGSTLTLSGNAAANQISGAGTLVNTGTANMNMQGINVVNSGTITGDINSTGTNGISNTG 663
Cdd:COG4625   407 GTGGGGAGGGGGAAGGGGGGTGAGGGGGGGGTGAGGGGATGGGGGGGGGAGGSGGGAGAGGGSGSGAGTLTLTGNNTYTG 486


                  ....*..
gi 1224540019 664 TINGNAG 670
Cdd:COG4625   487 TTTVNGG 493
 
Name Accession Description Interval E-value
PRK12804 PRK12804
flagellin; Provisional
 1-149 4.21e-46

flagellin; Provisional


Pssm-ID: 183759 [Multi-domain]  Cd Length: 301  Bit Score: 167.87  E-value: 4.21e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019   1 MVIQHNLSAMNSGRQVGITAGQQQKCISKLSSGYRINQAADNAAGLSISEKMRAQIRGLDRASQNMQDSISLIQTAEGAL 80
Cdd:PRK12804    1 MRINHNIAALNTLNRLSANNGASQKNMEKLSSGLKINRAGDDAAGLAISEKMRGQIRGLEMASKNAQDGISLIQTAEGAL 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019  81 SEVQSVVQRIRELSVQASND-TNVTADRTSIQDEITELVGEVTRISEQTEFNGMKLLNGNLEASTTAATP 149
Cdd:PRK12804   81 TETHSILQRVRELVVQAGNTgTQDGTDLGAIQDEIKALVDEIDGISDRTEFNGKKLLDGTFKPAAPAAGT 150
PRK08869 PRK08869
polar flagellin E;
1-139 1.67e-44

polar flagellin E;


Pssm-ID: 236344 [Multi-domain]  Cd Length: 376  Bit Score: 165.49  E-value: 1.67e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019   1 MVIQHNLSAMNSGRQVGITAGQQQKCISKLSSGYRINQAADNAAGLSISEKMRAQIRGLDRASQNMQDSISLIQTAEGAL 80
Cdd:PRK08869    2 VNVNTNVSAMTAQRNLNGATSALSQSMERLSSGKRINSAKDDAAGLQISNRLTTQIRGLDVAVRNANDGISIAQTAEGAM 81

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1224540019  81 SEVQSVVQRIRELSVQASNDTNVTADRTSIQDEITELVGEVTRISEQTEFNGMKLLNGN 139
Cdd:PRK08869   82 NETTNILQRMRDLSLQSANGSNSASDRQALQEEVTALNDELNRIAETTSFGGTKLLNGS 140
FlgL COG1344
Flagellin and related hook-associated protein FlgL [Cell motility];
1-171 8.73e-40

Flagellin and related hook-associated protein FlgL [Cell motility];


Pssm-ID: 440955 [Multi-domain]  Cd Length: 245  Bit Score: 147.70  E-value: 8.73e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019   1 MVIQHNLSAMNSGRQVGITAGQQQKCISKLSSGYRINQAADNAAGLSISEKMRAQIRGLDRASQNMQDSISLIQTAEGAL 80
Cdd:COG1344     1 MRISTNMSALNALRNLNRTQSDLAKLQEQLSSGKRINSASDDPAGAAIALRLRSQIRGLEQYQRNANDAISRLQTAEGAL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019  81 SEVQSVVQRIRELSVQASNDTNVTADRTSIQDEITELVGEVTRISEQTEFNGMKLLNGNLEASTTAATPLVSLANHPEAY 160
Cdd:COG1344    81 GEITDILQRARELAVQAANGTLSDEDRAAIAAELEQLLDQLLSIANTTDFNGRYLFAGTATDTPPFQVDYQGDAGQRTAA 160

                         170
                  ....*....|.
gi 1224540019 161 NLTLAEAVDSI 171
Cdd:COG1344   161 LGALDAALDNV 171
PRK12806 PRK12806
flagellin; Provisional
 2-297 3.27e-35

flagellin; Provisional


Pssm-ID: 183761 [Multi-domain]  Cd Length: 475  Bit Score: 140.59  E-value: 3.27e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019   2 VIQHNLSAMNSGRQVGITAGQQQKCISKLSSGYRINQAADNAAGLSISEKMRAQIRGLDRASQNMQDSISLIQTAEGALS 81
Cdd:PRK12806    4 VINTNVASLTAQRNLGVSGNMMQTSIQRLSSGLRINSAKDDAAGLAISQRMTAQIRGMNQAVRNANDGISLAQVAEGAMQ 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019  82 EVQSVVQRIRELSVQASNDTNVTADRTSIQDEITELVGEVTRISEQTEFNGMKLLNGNLEASTTAATplvslANHPEAYN 161
Cdd:PRK12806   84 ETTNILQRMRELSVQAANSTNNSSDRASIQSEISQLKSELERIAQNTEFNGQRILDGSFSGASFQVG-----ANSNQTIN 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 162 LTLAEA-VDSIGENEVGlIFTEESDYVTTQTNAGSSTSTAYGTDIMDTLETEIVPQAVQSlldTYSGALGYLAGSSVGIg 240
Cdd:PRK12806  159 FSIGSIkASSIGGIATA-TGTEVAGAAATDITIAIGGGAATSINSSANFTGALNGQDATS---AYAKAAAINDAGIGGL- 233

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1224540019 241 lklySDTTSTLAYVSCGATVGGSGSTLSFTlavnVNSLNFTAGE--LTDDSREDLEATI 297
Cdd:PRK12806  234 ----SVTASTSGTQAVGAIGGTAGDTYNLT----INGVAIYTNLdvATALTNSDLRDAI 284
Flagellin_N pfam00669
Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial ...
 3-139 1.60e-34

Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial flagella. This family includes flagellins and hook associated protein 3. Structurally this family forms an extended helix that interacts with pfam00700.


Pssm-ID: 425809 [Multi-domain]  Cd Length: 139  Bit Score: 128.61  E-value: 1.60e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019   3 IQHNLSAMNSGRQVGITAGQQQKCISKLSSGYRINQAADNAAGLSISEKMRAQIRGLDRASQNMQDSISLIQTAEGALSE 82
Cdd:pfam00669   1 INTNSAALAARSNLNKNQAELSKAQERLSTGLRINSALDDAAGLAISVSLRAQIAGLSQAVRNNSLGIGRLQTAQGALSE 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1224540019  83 VQSVVQRIRELSVQASNDTNVTADRTSIQDEITELVGEVTRISEQTEFNGMKLLNGN 139
Cdd:pfam00669  81 VTDILQRMKELAVQASNGGNSDIDRASIQAEIQQLTDELNNIANTTSFNGEYLLAGI 137
PRK06819 PRK06819
FliC/FljB family flagellin;
27-139 3.63e-33

FliC/FljB family flagellin;


Pssm-ID: 235867 [Multi-domain]  Cd Length: 376  Bit Score: 132.21  E-value: 3.63e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019  27 ISKLSSGYRINQAADNAAGLSISEKMRAQIRGLDRASQNMQDSISLIQTAEGALSEVQSVVQRIRELSVQASNDTNVTAD 106
Cdd:PRK06819   29 IERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQAARNANDGISIAQTTEGALNEINNNLQRVRELTVQAQNGSNSSSD 108

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1224540019 107 RTSIQDEITELVGEVTRISEQTEFNGMKLLNGN 139
Cdd:PRK06819  109 LDSIQDEISQRLAEIDRVSDQTQFNGVKVLAED 141
PRK12803 PRK12803
flagellin; Provisional
 1-137 8.67e-33

flagellin; Provisional


Pssm-ID: 183758 [Multi-domain]  Cd Length: 335  Bit Score: 130.31  E-value: 8.67e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019   1 MVIQHNLSAMNSGRQVGITAGQQQKCISKLSSGYRINQAADNAAGLSISEKMRAQIRGLDRASQNMQDSISLIQTAEGAL 80
Cdd:PRK12803    1 MIINHNTSAINASRNNSINAANLSKTQEKLSSGHRINRASDDAAGMGVAGKINAQIRGLSQASRNTSKAINFIQTTEGNL 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1224540019  81 SEVQSVVQRIRELSVQASNDTNVTADRTSIQDEITELVGEVTRISEQTEFNGMKLLN 137
Cdd:PRK12803   81 NEVEKVLVRMKELAVQSGNGTYSDADRGSIQIEIEQLTDEINRIADQAQYNQMHMLS 137
flagella_HExxH NF033876
flagellinolysin; Flagellinolysin is a variant form of bacterial flagellin in with the normally ...
 110-462 9.26e-30

flagellinolysin; Flagellinolysin is a variant form of bacterial flagellin in with the normally hypervariable central region contains an M9 (MEROPS classification) family metalloprotease domain, with its signature HExxH motif. The founding member of the family, from the pathogen Clostridium haemolyticum, shows EDTA-sensitive metalloprotease activity. The large count of flagellin subunits in a complete flagellum means the capacity of flagellinolysin to perform as a protease may have implications for host-pathogen relationships.


Pssm-ID: 468217  Cd Length: 380  Bit Score: 122.38  E-value: 9.26e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 110 IQDEITELVGEVTRISEQTEFNGMKLLNGNLEASTTAATPLvslanhpeaynltlaeavdsigenevglifteesdyvtt 189
Cdd:NF033876    1 LQKEINQLKQEIDRIAETTEFNGKKLFDQGASVGSADPDKQ--------------------------------------- 41

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 190 qtnagsststaygtDIMDTLETEIVPQAVQSLLDTYSGALGylaGSSVGIGLKLYSDTTSTLAYVSCGATVGGSGSTLSf 269
Cdd:NF033876   42 --------------AILDGLKSGWLENAEDLIKEYYGLTAD---GADLTVNLEYTDGAGGTLAYVSSGSGGGGKGGNLT- 103

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 270 tlaVNVNSLNFTAGELTDDSRED--LEATIAHEMVHAFMDESVTAGMLgyngstfvtayPTWFKEGMAQTASGGSDWVKy 347
Cdd:NF033876  104 ---LTIDMADFSPANLPNGGTAPqyLDRTIAHEMVHAVMGRTMNFSSL-----------PTWFIEGTAEFIHGADERLA- 168

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 348 GLGITAAATDAQIQSAFSGLTTNTNEANYATGYLACMylgylaggggTVNASTIAAGDD---KILQSLVS--GKSLDQTI 422
Cdd:NF033876  169 ADLAGGTSDAAGVAALFNGGAWTSTSADYSAGYAAVR----------YLHDQIKAAGGGgikDIMQYLKAnaGSTLDQAL 238

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|..
gi 1224540019 423 ADYTKYSGYT--DFTTNLQNDTEAydFVRNLMSAIGTGRGSI 462
Cdd:NF033876  239 AAATGGAFATeaDFLADFNANGAA--FIKNYMDLTNADTGAI 278
PRK12802 PRK12802
flagellin; Provisional
 27-199 3.50e-29

flagellin; Provisional


Pssm-ID: 139237 [Multi-domain]  Cd Length: 282  Bit Score: 118.06  E-value: 3.50e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019  27 ISKLSSGYRINQAADNAAGLSISEKMRAQIRGLDRASQNMQDSISLIQTAEGALSEVQSVVQRIRELSVQASNDTNVTAD 106
Cdd:PRK12802   29 MTRLSSGLKINSAKDDAAGLQIATRQTSQIRGQTQAIKNANDGISIAQTAEGALQESTNILQRMRELAVQSRNDSNDSTD 108

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 107 RTSIQDEITELVGEVTRISEQTEFNGMKLLNGnleASTTAATPLVSLANHPEAYNLTLAEAVDSIGENEVGLIFTEESDY 186
Cdd:PRK12802  109 RAALNKEFTTMLDEITRIATSTTLNGKNLLDG---SAGTMTFQVGANTGQSNQITFGLSASFDATGLGVGSGTLITGADS 185

                         170
                  ....*....|...
gi 1224540019 187 VTTQTNAGSSTST 199
Cdd:PRK12802  186 AAAETNAQAAITA 198
PRK08026 PRK08026
FliC/FljB family flagellin;
27-136 1.90e-27

FliC/FljB family flagellin;


Pssm-ID: 236140 [Multi-domain]  Cd Length: 529  Bit Score: 117.92  E-value: 1.90e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019  27 ISKLSSGYRINQAADNAAGLSISEKMRAQIRGLDRASQNMQDSISLIQTAEGALSEVQSVVQRIRELSVQASNDTNVTAD 106
Cdd:PRK08026   29 IERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQAARNANDGISVAQTTEGALSEINNNLQRVRELTVQAATGTNSQSD 108

                          90       100       110
                  ....*....|....*....|....*....|
gi 1224540019 107 RTSIQDEITELVGEVTRISEQTEFNGMKLL 136
Cdd:PRK08026  109 LDSIQDEIKSRLDEIDRVSGQTQFNGVNVL 138
PRK12804 PRK12804
flagellin; Provisional
 834-961 8.68e-27

flagellin; Provisional


Pssm-ID: 183759 [Multi-domain]  Cd Length: 301  Bit Score: 111.63  E-value: 8.68e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 834 LNLQIGANQGQTMNLSIEGMSSADLGLDK-------------VKTDTFQNAQTS--------ITLCDNANKKVSEVRSRL 892
Cdd:PRK12804  153 LTFQIGANAAQQLSVNIEAMSADALGVKDtdgtlvtgksvsdIDVTKFANAAAAadggfddqLKIVDGAIKQVSDQRSKL 232

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1224540019 893 GAYQNRLEHAISNTDNTHENLQAAESRIRDLDIEHEMVQYSIKSILLQSGQSMLAQANQQANSILSILQ 961
Cdd:PRK12804  233 GAVQNRLEHTINNLGASGENLTAAESRIRDVDMAKEMSEFTKNNILSQASQAMLAQANQQPQNVLQLLR 301
PRK12807 PRK12807
flagellin; Provisional
 1-198 1.29e-26

flagellin; Provisional


Pssm-ID: 171737 [Multi-domain]  Cd Length: 287  Bit Score: 110.68  E-value: 1.29e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019   1 MVIQHNLSAMNSGRQVGITAGQQQKCISKLSSGYRINQAADNAAGLSISEKMRAQIRGLDRASQNMQDSISLIQTAEGAL 80
Cdd:PRK12807    1 MRINTNINSMRTQEYMRQNQDKMNVSMNRLSSGKRINSAADDAAGLAIATRMRARQSGLEKASQNTQDGMSLIRTAESAM 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019  81 SEVQSVVQRIRELSVQASNDTNVTADRTSIQDEITELVGEVTRISEQTEFNGMKLLNGNLEASTTAATPLVSLAN----H 156
Cdd:PRK12807   81 NSVSNILTRMRDIAVQSSNGTNTAENQSALQKEFAELQEQIDYIAKNTEFNDKNLLAGTGAVTIGSTSISGAEISietlD 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 1224540019 157 PEAYNLTLAEAVDSIGENEVGLIFTEESDYVTTQTNAGSSTS 198
Cdd:PRK12807  161 SSATNQQITIKLANTTAEKLGIDATTSNISISGAASALAAIS 202
PRK12808 PRK12808
flagellin; Provisional
 1-139 7.78e-22

flagellin; Provisional


Pssm-ID: 237212 [Multi-domain]  Cd Length: 476  Bit Score: 100.03  E-value: 7.78e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019   1 MVIQHNLSAMNSGRQVGITAGQQQKCISKLSSGYRINQAADNAAGLSISEKMRAQIRGLDRASQNMQDSISLIQTAEGAL 80
Cdd:PRK12808    1 MRINTNINSMRTQEYMRQNQAKMSNAMDRLSSGKRINNASDDAAGLAIATRMRARESGLGVAANNTQDGMSLIRTADSAM 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1224540019  81 SEVQSVVQRIRELSVQASNDTNVTADRTSIQDEITELVGEVTRISEQTEFNGMKLLNGN 139
Cdd:PRK12808   81 NSVSNILLRMRDIANQSANGTNTDKNQAALQKEFAELQKQITYIADNTQFNDKNLLNSN 139
PRK08869 PRK08869
polar flagellin E;
840-961 3.04e-20

polar flagellin E;


Pssm-ID: 236344 [Multi-domain]  Cd Length: 376  Bit Score: 93.84  E-value: 3.04e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 840 ANQGQTMNLSIEGMSSADLGLDKVKTDTFQN--------AQTSITLCDNANKKVSEVRSRLGAYQNRLEHAISNTDNTHE 911
Cdd:PRK08869  247 AGQKVSGGVSFSGGLAAELGLGNATAVTVDDldistvggAQQAVAVIDAALKYVDSHRADLGAFQNRFTHAINNLQNISE 326

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1224540019 912 NLQAAESRIRDLDIEHEMVQYSIKSILLQSGQSMLAQANQQANSILSILQ 961
Cdd:PRK08869  327 NLSASNSRIKDTDFAKETTELTKAQILQQAGTSILAQAKQAPQSALSLLQ 376
PRK13588 PRK13588
flagellin B; Provisional
 3-138 3.00e-18

flagellin B; Provisional


Pssm-ID: 237440 [Multi-domain]  Cd Length: 514  Bit Score: 89.16  E-value: 3.00e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019   3 IQHNLSAMNSGRQVGITAGQQQKCISKLSSGYRINQAADNAAGLSISEKMRAQIRGLDRASQNMQDSISLIQTAEGALSE 82
Cdd:PRK13588    5 INTNIAALNAHAVGVQNNRDLSSSLEKLSSGLRINKAADDASGMAIADSLRSQSANLGQAIRNANDAIGMVQTADKAMDE 84

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1224540019  83 VQSVVQRIRELSVQASNDTNVTADRTSIQDEITELVGEVTRISEQTEFNGMKLLNG 138
Cdd:PRK13588   85 QIKILDTIKTKAVQAAQDGQTLESRRALQSDIQRLLEELDNIANTTSFNGQQMLSG 140
FlgL COG1344
Flagellin and related hook-associated protein FlgL [Cell motility];
872-961 3.51e-18

Flagellin and related hook-associated protein FlgL [Cell motility];


Pssm-ID: 440955 [Multi-domain]  Cd Length: 245  Bit Score: 84.92  E-value: 3.51e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 872 QTSITLCDNANKKVSEVRSRLGAYQNRLEHAISNTDNTHENLQAAESRIRDLDIEHEMVQYSIKSILLQSGQSMLAQANQ 951
Cdd:COG1344   158 TAALGALDAALDNVSSARAELGARQNRLESAINNLSDLSENLTAALSRLEDADMAEAITRLTKLQTLLQAALAALAQANQ 237

                          90
                  ....*....|
gi 1224540019 952 QanSILSILQ 961
Cdd:COG1344   238 L--SLLDLLR 245
PRK12584 PRK12584
flagellin A; Reviewed
 3-138 3.82e-18

flagellin A; Reviewed


Pssm-ID: 237146 [Multi-domain]  Cd Length: 510  Bit Score: 88.81  E-value: 3.82e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019   3 IQHNLSAMNSGRQVGITAGQQQKCISKLSSGYRINQAADNAAGLSISEKMRAQIRGLDRASQNMQDSISLIQTAEGALSE 82
Cdd:PRK12584    5 VNTNINALNAHVQSALTQNALKTSLEKLSSGLRINKAADDASGMTIADSLRSQASSLGQAIANTNDGMGIIQVADKAMDE 84

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1224540019  83 VQSVVQRIRELSVQASNDTNVTADRTSIQDEITELVGEVTRISEQTEFNGMKLLNG 138
Cdd:PRK12584   85 QLKILDTIKVKATQAAQDGQTTESRKAIQSDIVRLIQGLDNIGNTTTYNGQALLSG 140
PRK13589 PRK13589
flagellin A;
3-140 7.19e-18

flagellin A;


Pssm-ID: 172158 [Multi-domain]  Cd Length: 576  Bit Score: 88.55  E-value: 7.19e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019   3 IQHNLSAMNSGRQVGITAGQQQKCISKLSSGYRINQAADNAAGLSISEKMRAQIRGLDRASQNMQDSISLIQTAEGALSE 82
Cdd:PRK13589    5 INTNIGALNAHANSVVNSRELDKSLSRLSSGLRINSAADDASGMAIADSLRSQAATLGQAINNGNDAIGILQTADKAMDE 84

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1224540019  83 VQSVVQRIRELSVQASNDTNVTADRTSIQDEITELVGEVTRISEQTEFNGMKLLNGNL 140
Cdd:PRK13589   85 QLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNF 142
flagell_flgL TIGR02550
flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated ...
 1-229 3.01e-17

flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated proteins designated FlgL (or HAP3) encoded in bacterial flagellar operons. A N-terminal region of about 150 residues and a C-terminal region of about 85 residues are conserved. Members show considerable length heterogeneity between these two well-conserved terminal regions; the seed alignment 486 columns, 393 of which are represented in the model, while members of this family are from 287 to over 500 residues in length. This model distinguishes FlgL from the flagellin gene product FliC. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274195 [Multi-domain]  Cd Length: 306  Bit Score: 83.55  E-value: 3.01e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019   1 MVIQHNLSAMNSGrQVGITAGQQQkciskLSSGYRINQAADNAAGLSISEKMRAQIRGLDRASQNMQDSISLIQTAEGAL 80
Cdd:TIGR02550   6 MLYNNSLNSITNN-QSRLAKLQQQ-----LSSGKRINKPSDDPVAAAQALNLNQELAQLEQYQKNIDDAKNWLSQTETAL 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019  81 SEVQSVVQRIRELSVQASNDTNVTADRTSIQDEITELVGEVTRISEQTEFNGMKLLNGNleASTTAatPLVSLANHPEAY 160
Cdd:TIGR02550  80 SSVGDVLQRARELAVQAANGTLSDDDRKAIAKEIKQLLDQLVNLANTKDGNGRYIFSGT--KTDTP--PFSEDEGGEVTY 155

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1224540019 161 N------LTLAEAVDSIGENEVGLIFTEESdyVTTQTNAGSSTSTAYgtDIMDTLETEIVPQAVQSLLDTYSGAL 229
Cdd:TIGR02550 156 NgdggqrKVQVASNRSMPIGHPGDKVFMSI--PNNDKSVFSTGDDLI--DALKKLEDALSSGDAKAALSASLNDL 226
PRK08411 PRK08411
flagellin; Reviewed
 3-139 3.13e-17

flagellin; Reviewed


Pssm-ID: 236260 [Multi-domain]  Cd Length: 572  Bit Score: 86.20  E-value: 3.13e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019   3 IQHNLSAMNSGRQVGITAGQQQKCISKLSSGYRINQAADNAAGLSISEKMRAQIRGLDRASQNMQDSISLIQTAEGALSE 82
Cdd:PRK08411    5 INTNVAALNAKANSDLNAKSLDASLSRLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADKAMDE 84

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1224540019  83 VQSVVQRIRELSVQASNDTNVTADRTSIQDEITELVGEVTRISEQTEFNGMKLLNGN 139
Cdd:PRK08411   85 QLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGN 141
Flagellin_C pfam00700
Bacterial flagellin C-terminal helical region; Flagellins polymerize to form bacterial ...
 875-960 1.02e-16

Bacterial flagellin C-terminal helical region; Flagellins polymerize to form bacterial flagella. There is some similarity between this family and pfam00669, particularly the motif NRFXSXIXXL. It has been suggested that these two regions associate and this is shown to be correct as structurally this family forms an extended helix that interacts with pfam00700.


Pssm-ID: 425827 [Multi-domain]  Cd Length: 86  Bit Score: 75.83  E-value: 1.02e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 875 ITLCDNANKKVSEVRSRLGAYQNRLEHAISNTDNTHENLQAAESRIRDLDIEHEMVQYSIKSILLQSGQSMLAQANQQAN 954
Cdd:pfam00700   1 LDLIDEAITDLDSVRADLGAVQNRLESATTNLNNQQDNLKAAISRIEDVDPAEESTRMTKLQIQIQASYSLLSQANQLPQ 80


                  ....*.
gi 1224540019 955 SILSIL 960
Cdd:pfam00700  81 SLLNLL 86
flgL PRK07701
flagellar hook-associated protein FlgL; Validated
 1-161 2.75e-16

flagellar hook-associated protein FlgL; Validated


Pssm-ID: 181087 [Multi-domain]  Cd Length: 298  Bit Score: 80.42  E-value: 2.75e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019   1 MVIQHNLSAMNSGRQVGITAGQQQKCISKLSSGYRINQAADNAAGLSISEKMRAQIRGLDRASQNMQDSISLIQTAEGAL 80
Cdd:PRK07701    1 MRVTQNMLANNFLRNINSNLEKLDKYQEQLSTGKKITRPSDDPVVAMKSLRYRTDLAEVEQYQKNASDAKSWLENTESAL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019  81 SEVQSVVQRIRELSVQASNDTNVTADRTSIQDEITELVGEVTRISeQTEFNGMKLLNGnleaSTTAATPLVSLANHPEAY 160
Cdd:PRK07701   81 DQATDILQRARELAVQAANGTNTQTDRQAIAQEIEQLKEQLIQIA-NTQYNGRYIFNG----TKTDTPPVTDDGDNIENS 155


                  .
gi 1224540019 161 N 161
Cdd:PRK07701  156 T 156
PRK12805 PRK12805
FliC/FljB family flagellin;
29-148 5.19e-16

FliC/FljB family flagellin;


Pssm-ID: 183760 [Multi-domain]  Cd Length: 287  Bit Score: 79.53  E-value: 5.19e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019  29 KLSSGYRINQAADNAAGLSISEKMRAQIRGLDRASQNMQDSISLIQTAEGALSEVQSVVQRIRELSVQASNDTNVTADRT 108
Cdd:PRK12805   29 RLASGKRINSSLDDAAGLAVVTRMNVKSTGLDAASKNSSMGIDLLQTADSALSSMSSILQRMRQLAVQSSNGSFSDEDRK 108

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1224540019 109 SIQDEITELVGEVTRISEQTEFNGMKLLNgnlEASTTAAT 148
Cdd:PRK12805  109 QYTAEFGSLIKELDHVADTTNYNNIKLLD---QTATGAAT 145
PRK06819 PRK06819
FliC/FljB family flagellin;
879-960 1.45e-15

FliC/FljB family flagellin;


Pssm-ID: 235867 [Multi-domain]  Cd Length: 376  Bit Score: 79.82  E-value: 1.45e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 879 DNANKKVSEVRSRLGAYQNRLEHAISNTDNTHENLQAAESRIRDLDIEHEMVQYSIKSILLQSGQSMLAQANQQANSILS 958
Cdd:PRK06819  294 DDALKQVDGLRSSLGAVQNRFESTVTNLNNTVTNLSSARSRIEDADYATEVSNMSRAQILQQAGTSVLAQANQVPQTVLS 373


                  ..
gi 1224540019 959 IL 960
Cdd:PRK06819  374 LL 375
PRK12802 PRK12802
flagellin; Provisional
 834-961 3.90e-14

flagellin; Provisional


Pssm-ID: 139237 [Multi-domain]  Cd Length: 282  Bit Score: 73.76  E-value: 3.90e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 834 LNLQIGANQGQTMNLSIE----------GMSSADLGLDKVKTDTFQNAQTSITLCDNANKKVSEVRSRLGAYQNRLEHAI 903
Cdd:PRK12802  145 MTFQVGANTGQSNQITFGlsasfdatglGVGSGTLITGADSAAAETNAQAAITAIDAALQTINTTRADLGAAQNRLQSTI 224

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1224540019 904 SNTDNTHENLQAAESRIRDLDIEHEMVQYSIKSILLQSGQSMLAQANQQANSILSILQ 961
Cdd:PRK12802  225 SNLQNINENASAARGRVQDTDFAAETAQLTKQQTLQQASTSVLAQANQLPSAVLKLLQ 282
PRK12806 PRK12806
flagellin; Provisional
 853-961 5.85e-14

flagellin; Provisional


Pssm-ID: 183761 [Multi-domain]  Cd Length: 475  Bit Score: 75.50  E-value: 5.85e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 853 MSSADLGLDKVKTDTFQNAQTSITLCDNANKKVSEVRSRLGAYQNRLEHAISNTDNTHENLQAAESRIRDLDIEHEMVQY 932
Cdd:PRK12806  366 ISKDTVGIDSLDVSTASGAQTAIKRIDAALNSVNSNRANMGALQNRFESTIANLQNVSDNLSAARSRIQDADYAAEMASL 445

                          90       100
                  ....*....|....*....|....*....
gi 1224540019 933 SIKSILLQSGQSMLAQANQQANSILSILQ 961
Cdd:PRK12806  446 TKNQILQQAGTAMLAQANSLPQSVLSLLG 474
PRK08026 PRK08026
FliC/FljB family flagellin;
605-961 5.94e-13

FliC/FljB family flagellin;


Pssm-ID: 236140 [Multi-domain]  Cd Length: 529  Bit Score: 72.47  E-value: 5.94e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 605 AGSTLTLSGNAAANQISGAGTLVNTGTANMNMQGINVVNSgtiTGDINSTGTNGISNTGTINGNAGCESGGVIENWGKIT 684
Cdd:PRK08026  182 ANTAATVSDLTAAGATLDTTGLYDVKTKNAALTTADALAK---LGDGDKVTATATGGDYTYNAKSGKYQAADLAATLTPD 258

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 685 GTSTGNVKHYASSFTRNIippskvsvgeNLQGGDALTSTVSVNYNGTSTTLTGTWVVTDKDGNVvADPASITMQEGDSYS 764
Cdd:PRK08026  259 VGGTAGASYTIKDGTYEV----------NVDSDGKITLGGSALYIDATGNLTTNNAGAATKATL-DALKKTASEGAATAK 327

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 765 YALTFDGSPYDICFEANTKSALTEVSMAQTPDGGTISGTGGQltyIYTVSPNTVSGGPTAGGGSAAQGGLNLQIGANQ-- 842
Cdd:PRK08026  328 AALAAAGVTVADGVTAKTVKMSYTDKNGKVIDGGYAVKTGDD---YYAADYDEITGAISATTTYYTAKDGTTKTAANKlg 404

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 843 ---GQTMNLSIEGM----SSADLGLDK-VKTDTFQNAQTSItlcDNANKKVSEVRSRLGAYQNRLEHAISNTDNTHENLQ 914
Cdd:PRK08026  405 gadGKTEVVTIDGKtyvaSDGKQTTLAeAAATTTENPLAAL---DAAIASIDKFRSSLGAVQNRLDSAVTNLNNTTTNLS 481

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*..
gi 1224540019 915 AAESRIRDLDIEHEMVQYSIKSILLQSGQSMLAQANQQANSILSILQ 961
Cdd:PRK08026  482 EAQSRIQDADYATEVSNMSKAQIIQQAGNSVLAKANQVPQQVLSLLQ 528
PRK12803 PRK12803
flagellin; Provisional
 863-961 2.01e-12

flagellin; Provisional


Pssm-ID: 183758 [Multi-domain]  Cd Length: 335  Bit Score: 69.45  E-value: 2.01e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 863 VKTDTFQNAQTSITLCDNANKKVSEVRSRLGAYQNRLEHAISNTDNTHENLQAAESRIRDLDIEHEMVQYSIKSILLQSG 942
Cdd:PRK12803  237 VNVTTTVDANMSLAKIENAIRMISDQRANLGAFQNRLESIKASTEYAIENLKASYAQIKDATMTDEVVASTTNSILTQSA 316

                          90
                  ....*....|....*....
gi 1224540019 943 QSMLAQANQQANSILSILQ 961
Cdd:PRK12803  317 MAMIAQANQVPQYVLSLLR 335
PRK06663 PRK06663
flagellar hook-associated protein 3;
3-138 1.76e-11

flagellar hook-associated protein 3;


Pssm-ID: 180648 [Multi-domain]  Cd Length: 419  Bit Score: 67.40  E-value: 1.76e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019   3 IQHNLSAMNSGRQ-VGITAGQQQkciskLSSGYRINQAADNAAGLSISEKMRAQIRGLDRASQNMQDSISLIQTAEGALS 81
Cdd:PRK06663    8 MQYNNLKSSLRRQeSKMTKLQNQ-----LSTGQRIQKLRDDPTAATHSIRYKSRLFKLDRYQKNIDDGKDRLRYAEGYLQ 82

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1224540019  82 EVQSVVQRIRELSVQASNDTNVTADRTSIQDEITELVGEVTRISEQTEFNGMKLLNG 138
Cdd:PRK06663   83 SITNILQRARELAVQGANGTYQADDKKKIAKEIDELLEDLVDIANARGADGYSIFSG 139
PRK12807 PRK12807
flagellin; Provisional
 845-961 3.92e-11

flagellin; Provisional


Pssm-ID: 171737 [Multi-domain]  Cd Length: 287  Bit Score: 64.84  E-value: 3.92e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 845 TMNLSIEGMSSADLGLD----KVKTDTFQNAQTSITLCDNANKKVSEVRSRLGAYQNRLEHAISNTDNTHENLQAAESRI 920
Cdd:PRK12807  167 QITIKLANTTAEKLGIDattsNISISGAASALAAISALNTALNTVAGNRATLGATLNRLDRNVENLNNQATNMASAASQI 246

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1224540019 921 RDLDIEHEMVQYSIKSILLQSGQSMLAQANQQANSILSILQ 961
Cdd:PRK12807  247 EDADMAKEMSEMTKFKILNEAGISMLSQANQTPQMVSKLLQ 287
PRK13588 PRK13588
flagellin B; Provisional
 867-961 2.01e-10

flagellin B; Provisional


Pssm-ID: 237440 [Multi-domain]  Cd Length: 514  Bit Score: 64.50  E-value: 2.01e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 867 TFQNAQTSITLCDNANKKVSEVRSRLGAYQNRLEHAISNTDNTHENLQAAESRIRDLDIEHEMVQYSIKSILLQSGQSML 946
Cdd:PRK13588  420 SLKGAMIVMDMAESARTQLDKIRSDMGSVQMQLVSTINNISVTQVNVKAAESQIRDVDFAEESANFSKYNILAQSGSFAM 499

                          90
                  ....*....|....*
gi 1224540019 947 AQANQQANSILSILQ 961
Cdd:PRK13588  500 AQANAVQQNVLRLLQ 514
PRK12584 PRK12584
flagellin A; Reviewed
 867-961 6.93e-10

flagellin A; Reviewed


Pssm-ID: 237146 [Multi-domain]  Cd Length: 510  Bit Score: 62.62  E-value: 6.93e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 867 TFQNAQTSITLCDNANKKVSEVRSRLGAYQNRLEHAISNTDNTHENLQAAESRIRDLDIEHEMVQYSIKSILLQSGQSML 946
Cdd:PRK12584  416 TLRGAMVVMDIAESAMKMLDKVRSDLGSVQNQMISTVNNISITQVNVKAAESQIRDVDFAEESANFNKNNILAQSGSYAM 495

                          90
                  ....*....|....*
gi 1224540019 947 AQANQQANSILSILQ 961
Cdd:PRK12584  496 SQANTVQQNILRLLT 510
PRK08411 PRK08411
flagellin; Reviewed
 867-961 6.34e-09

flagellin; Reviewed


Pssm-ID: 236260 [Multi-domain]  Cd Length: 572  Bit Score: 59.62  E-value: 6.34e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 867 TFQNAQTSITLCDNANKKVSEVRSRLGAYQNRLEHAISNTDNTHENLQAAESRIRDLDIEHEMVQYSIKSILLQSGQSML 946
Cdd:PRK08411  478 TLKGAMAVMDIAETAITNLDQIRADIGSVQNQVTSTINNITVTQVNVKAAESQIRDVDFAAESANYSKANILAQSGSYAM 557

                          90
                  ....*....|....*
gi 1224540019 947 AQANQQANSILSILQ 961
Cdd:PRK08411  558 AQANAVQQNVLRLLQ 572
PRK13589 PRK13589
flagellin A;
802-961 1.09e-08

flagellin A;


Pssm-ID: 172158 [Multi-domain]  Cd Length: 576  Bit Score: 58.89  E-value: 1.09e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 802 GTGGQLTYIYTVSPNTVSGGPTAGGGSAAQGGLNLQIGANQGQTMNLSIEGMSSADlglDKVKTDTFQNAQTSITLCDNA 881
Cdd:PRK13589  420 GSGKNYSVGLSQGIQIISSASAMSTVYNVSAGSGFSSGSGLSQFATMKTTAAGVKD---ETAGVTTLKGAMAVMDIAETA 496

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 882 NKKVSEVRSRLGAYQNRLEHAISNTDNTHENLQAAESRIRDLDIEHEMVQYSIKSILLQSGQSMLAQANQQANSILSILQ 961
Cdd:PRK13589  497 ITNLDQIRADIGSVQNQLQVTINNITVTQVNVKAAESTIRDVDFAAESANFSKYNILAQSGSYAMSQANAVQQNVLKLLQ 576
PRK12808 PRK12808
flagellin; Provisional
 862-961 1.53e-06

flagellin; Provisional


Pssm-ID: 237212 [Multi-domain]  Cd Length: 476  Bit Score: 51.88  E-value: 1.53e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 862 KVKTDTFQNAQTSITLCDNANKKVSEVRSRLGAYQNRLEHAISNTDNTHENLQAAESRIRDLDIEHEMVQYSIKSILLQS 941
Cdd:PRK12808  377 KATTNSKADSLDAVKAIDEALKTVADNRATLGATLNRLDFNVNNLKSQSSSMASAASQIEDADMAKEMSEMTKFKILNEA 456

                          90       100
                  ....*....|....*....|
gi 1224540019 942 GQSMLAQANQQANSILSILQ 961
Cdd:PRK12808  457 GISMLSQANQTPQMVSKLLQ 476
FhaB COG3210
Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, ...
 131-882 1.88e-06

Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 442443 [Multi-domain]  Cd Length: 1698  Bit Score: 52.08  E-value: 1.88e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019  131 NGMKLLNGNLEASTTAATPLVSLANHPEAYNLTLAEAVDSIGENEVGLIFTEESDYVTTQTNAGSSTSTAYGTDIMDTLE 210
Cdd:COG3210    291 SSGDTTTNGTSSVTGAGGTGVLGGGTAAGITTTNTVGGNGDGNNTTANSGAGLVSGGTGGNNGTTGTGAGSGLTGTGNGG 370

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019  211 TEIVPQAVQSLLDTYSGALGYLAGSSVGIGLKLYSDTTSTLAYVSCGATVGGSGSTLSFTLAVNVNSLNFTAGELTDDSR 290
Cdd:COG3210    371 GLTTAGAGTVASTVGTATASTGNASSTTVLGSGSLATGNTGTTIAGNGGSANAGGFTTTGGVLGITGNGTVTGGTIGGLT 450

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019  291 EDLEATIAHEMVHAFMDESVTAGMLGYNGSTFVTAYPTWFKEGMAQTASGGSDWVKYGLGITAAATDAQIQSAFSGLTTN 370
Cdd:COG3210    451 GSGTTNGAGLSGNTDVSGTGTVTNSAGNTTSATTLAGGGIGTVTTNATISNNAGGDANGIATGLTGITAGGGGGGNATSG 530

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019  371 TNEANYATGYLACMYLGYLAGGGGTVNASTIAAGDDKILQSLVSGKSLDQTIADYTKYSGYTDFTTNLQNDTEAYDFVRN 450
Cdd:COG3210    531 GTGGDGTTLSGSGLTTTVSGGASGTTAASGSNTANTLGVLAATGGTSNATTAGNSTSATGGTGTNSGGTVLSIGTGSAGA 610

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019  451 LMSAIGTGRGSIITGNLAETNILADASITDLALFKLNTTNDRVKNLYPSEVNVFSGGATTASGTKAVAEAPEAPPVGGTS 530
Cdd:COG3210    611 TGTITLGAGTSGAGANATGGGAGLTGSAVGAALSGTGSGTTGTASANGSNTTGVNTAGGTGGGTTGTVTSGATGGTTGTT 690

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019  531 GPSSTIINLSDLSNVDFANINGIEYDAGTNTITITGDGTFAFTGSNAGTNVVVNSGVkakisaeniqcqeiILNAGSTLT 610
Cdd:COG3210    691 LNAATGGTLNNAGNTLTISTGSITVTGQIGALANANGDTVTFGNLGTGATLTLNAGV--------------TITSGNAGT 756

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019  611 LSGNAAANQISGAGTLVNTGTANMNMQGINVVNSGT-ITGDINSTGTngISNTGTINGNAGCESGGVIENWGKITGTSTG 689
Cdd:COG3210    757 LSIGLTANTTASGTTLTLANANGNTSAGATLDNAGAeISIDITADGT--ITAAGTTAINVTGSGGTITINTATTGLTGTG 834

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019  690 NVKHYASSFTRNIIPPSKVSVGENLQGGDALTSTVSVNYNGTSTTLTGTWVVTDKDGNVVADPASITMQEGDSYSYALTF 769
Cdd:COG3210    835 DTTSGAGGSNTTDTTTGTTSDGASGGGTAGANSGSLAATAASITVGSGGVATSTGTANAGTLTNLGTTTNAASGNGAVLA 914

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019  770 DGSPYDICFEANTKSALTEVSMAQTPDGGTISGTGGQLTYIYTVSPNTVSGGPTAGGGSAAQGGLNLQIGANQGQTMNLS 849
Cdd:COG3210    915 TVTATGTGGGGLTGGNAAAGGTGAGNGTTALSGTQGNAGLSAASASDGAGDTGASSAAGSSAVGTSANSAGSTGGVIAAT 994

                          730       740       750
                   ....*....|....*....|....*....|...
gi 1224540019  850 IEGMSSADLGLDKVKTDTFQNAQTSITLCDNAN 882
Cdd:COG3210    995 GILVAGNSGTTASTTGGSGAIVAGGNGVTGTTG 1027
flgL PRK08870
flagellar hook-associated protein FlgL; Reviewed
 1-117 3.10e-06

flagellar hook-associated protein FlgL; Reviewed


Pssm-ID: 236345 [Multi-domain]  Cd Length: 404  Bit Score: 50.68  E-value: 3.10e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019   1 MVIQHNLSAMNsGRQVGITAGQQQkciskLSSGYRINQAADNAAGLsisekmrAQIRGLDRASQN---MQDSISL----I 73
Cdd:PRK08870    7 QMYQQSVNSML-DQQSQLSQLQQQ-----LSSGKKLLTPSDDPVAA-------AQAVNLSQQSALldqYTKNINLarnrL 73

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1224540019  74 QTAEGALSEVQSVVQRIRELSVQASNDTNVTADRTSIQDEITEL 117
Cdd:PRK08870   74 QQEESTLGSVEDLLQRARELVVQAGNGSLSDSDRQAIATELQGL 117
AidA COG3468
Autotransporter adhesin AidA [Cell wall/membrane/envelope biogenesis, Intracellular ...
 309-736 3.77e-06

Autotransporter adhesin AidA [Cell wall/membrane/envelope biogenesis, Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 442691 [Multi-domain]  Cd Length: 846  Bit Score: 51.10  E-value: 3.77e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 309 SVTAGMLGYNGSTFVTAYPTWFKEGMAQTASGGSDWVKYGLGITAAATDAQIQSAFSGLTTNTNEANYATGYLAcmyLGY 388
Cdd:COG3468    25 GTGGGNAGLGIGNGGGGGAASGSGAGGVAGNGGGGGGGAGGGGGGAGSGGGLAGAGSGGTGGNSTGGGGGNSGT---GGT 101

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 389 LAGGGGTVNASTIAAGDDKILQSLVSGKSLDQTIADYTKYSGYTDFTTNLQNDTEAYDFVRNLMSAIGTGRGSIITGNLA 468
Cdd:COG3468   102 GGGGGGGGSGNGGGGGGGGGGGGTGGGGGGGTGSAGGGGGGGGGGTGVGGTGAAAAGGGTGSGGGGSGGGGGAGGGGGGG 181

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 469 ETNILADASITDLALFKLNTTNDRVKNLYPSEVNVFSGGATTASGTkavaeapeappvGGTSGPSSTIINLSDLSNVDFA 548
Cdd:COG3468   182 AGGSGGAGSTGSGAGGGGGGSGGGGGAAGTGGGGGGGGGAGGATGG------------AGSGGNTGGGVGGGGGSAGGTG 249

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 549 NINGIEYDAGTNTITITGDGTFAFTGSNAGTNVVVNSGVKAKISAENIQCQEIILNAGSTLTLSGNAAANQISGAGTLVN 628
Cdd:COG3468   250 GGGLTGGGAAGTGGGGGGTGTGSGGGGGGGANGGGSGGGGGASGTGGGGTASTGGGGGGGGGNGGGGGGGSNAGGGSGGG 329

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 629 TGTANMNMQGINVVNSGTITGDINSTGTNGISNTGTINGNAGCESGGVIENWGKITGTSTGNVKHYASSFTRNIIPPSKV 708
Cdd:COG3468   330 GGGGGGGGGGGTTLNGAGSAGGGTGAALAGTGGSGSGGGGGGGSGGGGGAGGGGANTGSDGVGTGLTTGGTGNNGGGGVG 409

                         410       420
                  ....*....|....*....|....*...
gi 1224540019 709 SVGENLQGGDALTSTVSVNYNGTSTTLT 736
Cdd:COG3468   410 GGGGGGLTLTGGTLTVNGNYTGNNGTLV 437
AidA COG3468
Autotransporter adhesin AidA [Cell wall/membrane/envelope biogenesis, Intracellular ...
 348-757 4.28e-06

Autotransporter adhesin AidA [Cell wall/membrane/envelope biogenesis, Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 442691 [Multi-domain]  Cd Length: 846  Bit Score: 50.72  E-value: 4.28e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 348 GLGITAAATDAQIQSAFSGLTTNTNEANYATGYLACMYLGYLAGGGGTVNASTIAAGDDKILQSLVSGKSLDQTIADYTK 427
Cdd:COG3468    30 NAGLGIGNGGGGGAASGSGAGGVAGNGGGGGGGAGGGGGGAGSGGGLAGAGSGGTGGNSTGGGGGNSGTGGTGGGGGGGG 109

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 428 YSGYTDFTTNLQNDTEAYDFVRNLMSAIGTGRGSIITGNLAETNILADASITDLALFKLNTTNDRVKNLYPSEVNVFSGG 507
Cdd:COG3468   110 SGNGGGGGGGGGGGGTGGGGGGGTGSAGGGGGGGGGGTGVGGTGAAAAGGGTGSGGGGSGGGGGAGGGGGGGAGGSGGAG 189

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 508 ATTASGTK-AVAEAPEAPPVGGTSGPSSTIINLSDLSNVDFANINGIEYDAGTNTITITGDGTFAFTGSNAGTNVVVNSG 586
Cdd:COG3468   190 STGSGAGGgGGGSGGGGGAAGTGGGGGGGGGAGGATGGAGSGGNTGGGVGGGGGSAGGTGGGGLTGGGAAGTGGGGGGTG 269

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 587 VKAKISAENIQCQEIILNAGSTLTLSGNAAANQISGAGTLVNTGTANMNmqGINVVNSGTITGDINSTGTNGISNTGTIN 666
Cdd:COG3468   270 TGSGGGGGGGANGGGSGGGGGASGTGGGGTASTGGGGGGGGGNGGGGGG--GSNAGGGSGGGGGGGGGGGGGGTTLNGAG 347

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 667 GNAGCESGGVIENWGKITGTSTGNVKHYASSFTRNIIPPSKVSVGENLQGGDALTSTVSVNYNGTSTTLTGTWVVTDKDG 746
Cdd:COG3468   348 SAGGGTGAALAGTGGSGSGGGGGGGSGGGGGAGGGGANTGSDGVGTGLTTGGTGNNGGGGVGGGGGGGLTLTGGTLTVNG 427

                         410
                  ....*....|.
gi 1224540019 747 NVVADPASITM 757
Cdd:COG3468   428 NYTGNNGTLVL 438
PRK12687 PRK12687
flagellin; Reviewed
 6-151 5.08e-06

flagellin; Reviewed


Pssm-ID: 105853 [Multi-domain]  Cd Length: 311  Bit Score: 49.66  E-value: 5.08e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019   6 NLSAMNSGRQVGITAGQQQKCISKLSSGYRINQAADNAAGLSISEKMRAQIRGLDRASQNMQDSISLIQTAEGALSEV-- 83
Cdd:PRK12687    7 NTSAMTALQTLRNVSSSLATTQNRISTGYRVATASDNSAYWSIATTMRSDNEALSAVSDALGLGAATVDTMYTALTSVvg 86

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019  84 --QSVVQRIRELSVQASndtNVTADRTSIQDEITELVGEVTRISEQTEFNGMKLLNGNLEASTTAATPLV 151
Cdd:PRK12687   87 dsKSGLTALKAKLVAAR---EPGIDRTKIQSEITAIQNDLKNTAGLAVFNGENWLSVDSSPSSYNATKSV 153
flgL PRK12717
flagellar hook-associated protein 3;
31-140 3.04e-05

flagellar hook-associated protein 3;


Pssm-ID: 171679 [Multi-domain]  Cd Length: 523  Bit Score: 47.81  E-value: 3.04e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019  31 SSGYRINQAADNAAGLSISEKMRAQIRGLDRASQNMQDSISLIQTAEGALSEVQSVVQRIRELSVQASNDTNVTADRTSI 110
Cdd:PRK12717   31 SSGIRIQTAADDPVGAARLLQLQQQQAMLDQYSGNITTIKNSLTQEESTLTSINDTLQRARELAVSAGNGGLTDADRKAI 110

                          90       100       110
                  ....*....|....*....|....*....|
gi 1224540019 111 QDEITELVGEVTRISEQTEFNGMKLLNGNL 140
Cdd:PRK12717  111 ASELKQIEAQLLGLMNSKDANGQYLFAGSK 140
FhaB COG3210
Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, ...
 159-762 3.36e-05

Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 442443 [Multi-domain]  Cd Length: 1698  Bit Score: 48.22  E-value: 3.36e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019  159 AYNLTLAEAVDSIGENEVGLIFTEESDYVTTQTNAGSSTSTAYGTDIMDTLETEIVPQAVQSLLDTYSGALGYLAGSSVG 238
Cdd:COG3210    129 TGGTTTSSTNTVTTLGGTTTGNTVLSTSGAGNNTNTNNSSSGTNIGNSIPTTGGSLNVVAANPTGVTGVGGALINATAGV 208

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019  239 IGLKLYSDTTSTLAYVSCGATVGGSGSTLSFTLAVNVNSLNFTAGELTDDSREDLEATIAHEMVHAFMDESVTAGMLGYN 318
Cdd:COG3210    209 LANAGGGTAGGVASANSTLTGGVVAAGTGAGVISTGGTDISSLSVAAGAGTGGAGGTGNAGNTTIGTTVTGTNATGSNTA 288

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019  319 GSTFVTAYPTWFKEGMAQTASGGSDWVKYGLGITAAATDAQIQSAFSGLTTNTNEANYATGYLAcMYLGYLAGGGGTVNA 398
Cdd:COG3210    289 GASSGDTTTNGTSSVTGAGGTGVLGGGTAAGITTTNTVGGNGDGNNTTANSGAGLVSGGTGGNN-GTTGTGAGSGLTGTG 367

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019  399 STIAAGDDKILQSLVSGKSLDQTIADYTKYSGYTDFTTNLQNDTEAYDFVRNLMSAIGTGRGSIITGNLAETNILADASI 478
Cdd:COG3210    368 NGGGLTTAGAGTVASTVGTATASTGNASSTTVLGSGSLATGNTGTTIAGNGGSANAGGFTTTGGVLGITGNGTVTGGTIG 447

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019  479 TDLALFKLNTTNDRVKNLYPSEVNVFSGGATTASGTKAVAEApeAPPVGGTSGPSSTIINLSDLSNVDFANINGIEYDAG 558
Cdd:COG3210    448 GLTGSGTTNGAGLSGNTDVSGTGTVTNSAGNTTSATTLAGGG--IGTVTTNATISNNAGGDANGIATGLTGITAGGGGGG 525

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019  559 TNTITITGDGTFAFTGSNAGTNVVVNSGVKAKISAENIQCQEIILNAGSTLTLSGNAAANQISGAGTLVNTGTANMNMQG 638
Cdd:COG3210    526 NATSGGTGGDGTTLSGSGLTTTVSGGASGTTAASGSNTANTLGVLAATGGTSNATTAGNSTSATGGTGTNSGGTVLSIGT 605

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019  639 INVVNSGTITGDINSTGTNGISNTGTINGNAGCESGGVIENWGKITGTSTGNVKHYASSFTRNIIPPSKVSVGENLQGGD 718
Cdd:COG3210    606 GSAGATGTITLGAGTSGAGANATGGGAGLTGSAVGAALSGTGSGTTGTASANGSNTTGVNTAGGTGGGTTGTVTSGATGG 685

                          570       580       590       600
                   ....*....|....*....|....*....|....*....|....
gi 1224540019  719 ALTSTVSVNYNGTSTTLTGTWVVTDKDGNVVADPASITMQEGDS 762
Cdd:COG3210    686 TTGTTLNAATGGTLNNAGNTLTISTGSITVTGQIGALANANGDT 729
34 PHA02584
long tail fiber, proximal subunit; Provisional
 557-803 4.77e-05

long tail fiber, proximal subunit; Provisional


Pssm-ID: 222890 [Multi-domain]  Cd Length: 1229  Bit Score: 47.44  E-value: 4.77e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019  557 AGTNTITITGDGTFAFTGSNAGTNVVVNSGVKAKISAENIQcQEIILNAGSTLTLSGNAAANQISGAGTLVNTGTANMNM 636
Cdd:PHA02584   928 TATFGGSVTANSTLTTQNTSNGTVVVVDETSIAFYSQNNTT-GNIVFNIDGTVDPINVNANGTLNATGVATNGRAVYAEG 1006

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019  637 QGInvVNSGTITGDINSTGTNGISNTGT--INGNAGCESGGVIENWGKITGTSTGNVKHYASSFtrniippskVSVGENL 714
Cdd:PHA02584  1007 GGI--ARTNNAARAITGGFTIRNDGSTTvfLLTAAGDQTGGFNGLKSLIINNANGQVTINDNYI---------INAGGTI 1075

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019  715 QGGdALTSTVSVNYNGTSTTLT--------GTWVVTDKDGNVVAD-PASITMQEGDSYSYALTFDGSPYDICFEantksa 785
Cdd:PHA02584  1076 MSG-GLTVNSRIRSQGTKASYTraptadtvGFWSVDINDSATYNQfPGYFQMVTKTKSPGTLTQFGNTLDSLYQ------ 1148

                          250
                   ....*....|....*...
gi 1224540019  786 ltevsmAQTPDGGTISGT 803
Cdd:PHA02584  1149 ------DWSPDGRTTRYT 1160
PRK12805 PRK12805
FliC/FljB family flagellin;
834-960 1.07e-04

FliC/FljB family flagellin;


Pssm-ID: 183760 [Multi-domain]  Cd Length: 287  Bit Score: 45.25  E-value: 1.07e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 834 LNLQIGANQGQTMNLSIEGMSSADLGLDKVKTDTFQNAQTSITLCDNANKKVSEVRSRLGAYQNRLEHAISNTDNTHENL 913
Cdd:PRK12805  159 INIDLFNAKGLSAGTITLGSGSTVAGYSALSVADADSSQEATEAIDELINNISNGRALLGAGMSRLSYNVSNVNNQSIAT 238

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1224540019 914 QAAESRIRDLDIEHEMVQYSIKSILLQSGQSMLAQANQQANSILSIL 960
Cdd:PRK12805  239 KASASSIEDADMAAEMSEMTKYKILTQTSISMLSQANQTPQMLTQLI 285
flgL PRK08073
flagellar hook-associated protein 3;
1-139 2.24e-04

flagellar hook-associated protein 3;


Pssm-ID: 181222 [Multi-domain]  Cd Length: 287  Bit Score: 44.20  E-value: 2.24e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019   1 MVIQHNLSAMNSGRQVGITAGQQQKCISKLSSGYRINQAADNAAGLSISEKMRAQIRGLDRASQNMQDSISLIQTAEGAL 80
Cdd:PRK08073    1 MRVSTFQNANWAKNQLMDLNVQQQYHRNQVTSGKKNLSMSEDPLAASKSFAIQHSLANIEQMQKDVADSKNVLNQTENTL 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1224540019  81 SEVQSVVQRIRELSVQASNDTNVTADRTSIQDEITELVGEVTRISeQTEFNGMKLLNGN 139
Cdd:PRK08073   81 SGMSKSLTRVDQLVLQALNGTNDEKELKAIGAEIDQILKQVVYLA-NTKEQGRYVFGGD 138
COG4625 COG4625
Uncharacterized conserved protein, contains a C-terminal beta-barrel porin domain [Function ...
 347-873 5.46e-04

Uncharacterized conserved protein, contains a C-terminal beta-barrel porin domain [Function unknown];


Pssm-ID: 443664 [Multi-domain]  Cd Length: 900  Bit Score: 44.00  E-value: 5.46e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 347 YGLGITAAATDAQIQSAFSGLTTNTNEANYATGYLACMYLGYLAGGGGTVNASTIAAGDDKILQSLVSGKSLDQTIADYT 426
Cdd:COG4625    12 GGGGGTGGGGAGGGGGAGGGAGGGGAGGGGGGGGGGGGAGGGGGGGGTGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGTG 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 427 KYSGYTDFTTNLQNDTEAYDFVRNLMSAIGTGRGSIITGNLAETNILADASITDLALFKLNTTNDRVKNLYPSEVNVFSG 506
Cdd:COG4625    92 GVGGGGGGGGGGGGGGGGGGGGGGGGSAGGGGGGAGGAGGGGGGGAGGGGGGGGGGGAGGGGGGGAGGAGGGGGGGGGGG 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 507 GATTASGTKAVAEAPEAPPVGGTSGPSSTIINLSDLSNVDFANINGIEYDAGTNTITITGDGTFAFTGSNAGTNVVVNSG 586
Cdd:COG4625   172 GGGGGGGGGGGGGGGGGGGGGNGGGGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGG 251

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 587 VKAKISAENIQCQEIILNAGSTLTLSGNAAANQISGAGTLVNTGTANMNMQGINVVNSGTITGDINSTGTNGISNTGTIN 666
Cdd:COG4625   252 GGGGGGNGGGGGAGGGGGGGGGGSGGGGGGGGGGGSGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG 331

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 667 GNAGCESGGVIENWGKITGTSTGNVKHYASSFTRNIIPPSKVSVGENLQGGDALTSTVSVNYNGTSTTLTGTWVVTDKDG 746
Cdd:COG4625   332 GGAGGGGGSGGAGAGGGGAGGGGAGGGGGGGTGGGGGGGGGGGGGSGGGGAGGGGGSGGGGGGGAGGGGGGGGAGGTGGG 411

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 747 NVVADPASITMQEGDSYSYALTFDGSPYDICFEANTKSALTEVSMAQTPDGGTISGTGGQLTYIYTVSPNTVSGGPTAGG 826
Cdd:COG4625   412 GAGGGGGAAGGGGGGTGAGGGGGGGGTGAGGGGATGGGGGGGGGAGGSGGGAGAGGGSGSGAGTLTLTGNNTYTGTTTVN 491

                         490       500       510       520       530
                  ....*....|....*....|....*....|....*....|....*....|
gi 1224540019 827 G---SAAQGGLNLQIGANQGQTMNLSIEGMSSADLGLDKVKTDTFQNAQT 873
Cdd:COG4625   492 GggnYTQSAGSTLAVEVDAANSDRLVVTGTATLNGGTVVVLAGGYAPGTT 541
COG4625 COG4625
Uncharacterized conserved protein, contains a C-terminal beta-barrel porin domain [Function ...
 333-808 8.57e-04

Uncharacterized conserved protein, contains a C-terminal beta-barrel porin domain [Function unknown];


Pssm-ID: 443664 [Multi-domain]  Cd Length: 900  Bit Score: 43.23  E-value: 8.57e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 333 GMAQTASGGSDWVKYGLGITAAATDAQIQSAFSGLTTNTNEANYATGYLACMYLGYLAGGGGTVNASTIAAGDDKILQSL 412
Cdd:COG4625    18 GGGGAGGGGGAGGGAGGGGAGGGGGGGGGGGGAGGGGGGGGTGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGTGGVGGGG 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 413 VSGKSLDQTIADYTKYSGYTDFTTNLQNDTEAYDFVRNLMSAIGTGRGSIITGNLAETNILADASITDLALFKLNTTNDR 492
Cdd:COG4625    98 GGGGGGGGGGGGGGGGGGGGSAGGGGGGAGGAGGGGGGGAGGGGGGGGGGGAGGGGGGGAGGAGGGGGGGGGGGGGGGGG 177

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 493 VKNLYPSEVNVFSGGATTASGTKAVAEAPEAPPVGGTSGPSSTIINLSDLSNVDFANINGIEYDAGTNTITITGDGTFAF 572
Cdd:COG4625   178 GGGGGGGGGGGGGGGNGGGGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGGGGGGG 257

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 573 TGSNAGTNVVVNSGVKAKISAENIQCQEIILNAGSTLTLSGNAAANQISGAGTLVNTGTANMNMQGINVVNSGTITGDIN 652
Cdd:COG4625   258 NGGGGGAGGGGGGGGGGSGGGGGGGGGGGSGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGG 337

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 653 STGTNGISNTGTINGNAGCESGGVIENWGKITGTSTGNVKHYASSFTRNIIPPSKVSVGENLQGGDALTSTVSVNYNGTS 732
Cdd:COG4625   338 GGSGGAGAGGGGAGGGGAGGGGGGGTGGGGGGGGGGGGGSGGGGAGGGGGSGGGGGGGAGGGGGGGGAGGTGGGGAGGGG 417

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 733 T----TLTGTWVVTDKDGNVVADPASITMQEGDSYSYALTFDGSPYDICFEANTKSALTEVSMAQTPDGGTISGTGGQLT 808
Cdd:COG4625   418 GaaggGGGGTGAGGGGGGGGTGAGGGGATGGGGGGGGGAGGSGGGAGAGGGSGSGAGTLTLTGNNTYTGTTTVNGGGNYT 497
COG4625 COG4625
Uncharacterized conserved protein, contains a C-terminal beta-barrel porin domain [Function ...
 184-670 1.59e-03

Uncharacterized conserved protein, contains a C-terminal beta-barrel porin domain [Function unknown];


Pssm-ID: 443664 [Multi-domain]  Cd Length: 900  Bit Score: 42.46  E-value: 1.59e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 184 SDYVTTQTNAGSSTSTAYGTDIMDTLETEIVPQAVQSLLDTYSGALGYLAGSSVGIGLKLYSDTTSTLAYVSCGATVGGS 263
Cdd:COG4625     7 GGGGGGGGGGTGGGGAGGGGGAGGGAGGGGAGGGGGGGGGGGGAGGGGGGGGTGGGGGGGGGGGGGGAGGGGGGGGGGGG 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 264 GSTLSFTLAVNVNSLNFTAGELTDDSREDLEATIAHEMVHAFMDESVTAGMLGYNGSTFVTAYPTWFKEGMAQTASGGSD 343
Cdd:COG4625    87 GGGTGGVGGGGGGGGGGGGGGGGGGGGGGGGSAGGGGGGAGGAGGGGGGGAGGGGGGGGGGGAGGGGGGGAGGAGGGGGG 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 344 WVKYGLGITAAATDAQIQSAFSGLTTNTNEANYATGYLACMYLGYLAGGGGTVNASTIAAGDDKILQSLVSGKSLDQTIA 423
Cdd:COG4625   167 GGGGGGGGGGGGGGGGGGGGGGGGGGNGGGGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 424 DYTKYSGYTDFTTNLQNDTEAYDFVRNLMSAIGTGRGSIITGNLAETNILADASITDLALFKLNTTNDRVKNLYPSEVNV 503
Cdd:COG4625   247 GAGGGGGGGGGNGGGGGAGGGGGGGGGGSGGGGGGGGGGGSGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG 326

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 504 FSGGATTASGTKAVAEAPEAPPVGGTSGPSSTIINLSDLSNVDFANINGIEYDAGTNTITITGDGTFAFTGSNAGTNVVV 583
Cdd:COG4625   327 GGGGGGGAGGGGGSGGAGAGGGGAGGGGAGGGGGGGTGGGGGGGGGGGGGSGGGGAGGGGGSGGGGGGGAGGGGGGGGAG 406

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 584 NSGVKAKISAENIQCQEIILNAGSTLTLSGNAAANQISGAGTLVNTGTANMNMQGINVVNSGTITGDINSTGTNGISNTG 663
Cdd:COG4625   407 GTGGGGAGGGGGAAGGGGGGTGAGGGGGGGGTGAGGGGATGGGGGGGGGAGGSGGGAGAGGGSGSGAGTLTLTGNNTYTG 486


                  ....*..
gi 1224540019 664 TINGNAG 670
Cdd:COG4625   487 TTTVNGG 493
PRK15319 PRK15319
fibronectin-binding autotransporter adhesin ShdA;
502-743 1.62e-03

fibronectin-binding autotransporter adhesin ShdA;


Pssm-ID: 185219 [Multi-domain]  Cd Length: 2039  Bit Score: 42.38  E-value: 1.62e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019  502 NVFSGGATTASGTkAVAEAPEAPPVGGTSGPSSTIINLSDLSNVDFANinGIEYDAGTNTITITGDGTFAFTGSNAGTNV 581
Cdd:PRK15319   893 NDYSGGTTIDDGV-LIADHADSLGTGAVANSGVLQVGEGELKNTLSGS--GSLVKTGTGELTLSGDNSYSGGTTIIGGTL 969

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019  582 VVNSGVKAKISAeniqcqeiILNAGsTLTLSGNAAANQISGAGTLVNTGTANMNMQGINVVNSGT-------ITGDINST 654
Cdd:PRK15319   970 IADHADSLGTGA--------VANSG-VLQVGEGELENTLSGSGSLVKTGTGELTLGGDNSYSGDTtiadgtlIAANVNAL 1040

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019  655 GTNGISNTGT--INGNAGCESGGVIENWGKITGTSTGNVKHyASSFTRNiiPPSKVSVGENLQGGDALTSTVSVNYNGTs 732
Cdd:PRK15319  1041 GSGNIDNSGTlmLDANGAFELANITTHSGATTALAAGSTLD-AGQLTQE--DGSTLSIDLGAATDDAVITADSVTLGGT- 1116

                          250
                   ....*....|.
gi 1224540019  733 TTLTGTWVVTD 743
Cdd:PRK15319  1117 LNVTGIGSVTD 1127
COG4625 COG4625
Uncharacterized conserved protein, contains a C-terminal beta-barrel porin domain [Function ...
 176-667 8.71e-03

Uncharacterized conserved protein, contains a C-terminal beta-barrel porin domain [Function unknown];


Pssm-ID: 443664 [Multi-domain]  Cd Length: 900  Bit Score: 40.15  E-value: 8.71e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 176 VGLIFTEESDYVTTQTNAGSSTSTAYGTDIMDTLETEIVPQAVQSLLDTYSGALGYLAGSSVGIGLKLYSDTTSTLAYVS 255
Cdd:COG4625     1 GGGGGGGGGGGGGGGGTGGGGAGGGGGAGGGAGGGGAGGGGGGGGGGGGAGGGGGGGGTGGGGGGGGGGGGGGAGGGGGG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 256 CGATVGGSGSTLSFTLAVNVNSLNFTAGELTDDSREDLEATIAHEMVHAFMDESVTAGMLGYNGSTFVTAYPTWFKEGMA 335
Cdd:COG4625    81 GGGGGGGGGTGGVGGGGGGGGGGGGGGGGGGGGGGGGSAGGGGGGAGGAGGGGGGGAGGGGGGGGGGGAGGGGGGGAGGA 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 336 QTASGGSDWVKYGLGITAAATDAQIQSAFSGLTTNTNEANYATGYLACMYLGYLAGGGGTVNASTIAAGDDKILQSLVSG 415
Cdd:COG4625   161 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGNGGGGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGGGG 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 416 KSLDQTIADYTKYSGYTDFTTNLQNDTEAYDFVRNLMSAIGTGRGSIITGNLAETNILADASITDLALFKLNTTNDRVKN 495
Cdd:COG4625   241 GGGGGGGAGGGGGGGGGNGGGGGAGGGGGGGGGGSGGGGGGGGGGGSGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 496 LYPSEVNVFSGGATTASGTKAVAEAPEAPPVGGTSGPSSTIINLSDLSNVDFANINGIEYDAGTNTITITGDGTFAFTGS 575
Cdd:COG4625   321 GGGGGGGGGGGGGAGGGGGSGGAGAGGGGAGGGGAGGGGGGGTGGGGGGGGGGGGGSGGGGAGGGGGSGGGGGGGAGGGG 400

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1224540019 576 NAGTNVVVNSGVKAKISAENIQCQEIILNAGSTLTLSGNAAANQISGAGTLVNTGTANMNMQGINVVNSGTITGDINSTG 655
Cdd:COG4625   401 GGGGAGGTGGGGAGGGGGAAGGGGGGTGAGGGGGGGGTGAGGGGATGGGGGGGGGAGGSGGGAGAGGGSGSGAGTLTLTG 480

                         490
                  ....*....|..
gi 1224540019 656 TNGISNTGTING 667
Cdd:COG4625   481 NNTYTGTTTVNG 492
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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