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MULTISPECIES: 50S ribosomal protein L30 [Fontibacillus]
uL30 family ribosomal protein( domain architecture ID 10012504)
uL30 family ribosomal protein, such as 50S ribosomal protein L30, which binds the 23SrRNA as well as the 5S rRNA
List of domain hits
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Name | Accession | Description | Interval | E-value | ||
rpmD | PRK05611 | 50S ribosomal protein L30; Reviewed |
1-59 | 3.23e-31 | ||
50S ribosomal protein L30; Reviewed : Pssm-ID: 180163 Cd Length: 59 Bit Score: 102.49 E-value: 3.23e-31
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Name | Accession | Description | Interval | E-value | ||
rpmD | PRK05611 | 50S ribosomal protein L30; Reviewed |
1-59 | 3.23e-31 | ||
50S ribosomal protein L30; Reviewed Pssm-ID: 180163 Cd Length: 59 Bit Score: 102.49 E-value: 3.23e-31
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RpmD | COG1841 | Ribosomal protein L30/L7E [Translation, ribosomal structure and biogenesis]; Ribosomal protein ... |
1-58 | 4.37e-28 | ||
Ribosomal protein L30/L7E [Translation, ribosomal structure and biogenesis]; Ribosomal protein L30/L7E is part of the Pathway/BioSystem: Ribosome 50S subunit Pssm-ID: 441446 Cd Length: 58 Bit Score: 94.72 E-value: 4.37e-28
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Ribosomal_L30 | cd01658 | Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one ... |
4-57 | 1.28e-25 | ||
Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one of the smallest ribosomal proteins with a molecular mass of about 7kDa. L30 binds the 23SrRNA as well as the 5S rRNA and is one of five ribosomal proteins that mediate the interactions 5S rRNA makes with the ribosome. The eukaryotic L30 members have N- and/or C-terminal extensions not found in their prokaryotic orthologs. L30 is closely related to the ribosomal L7 protein found in eukaryotes and archaea. Pssm-ID: 100100 Cd Length: 54 Bit Score: 88.25 E-value: 1.28e-25
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rpmD_bact | TIGR01308 | ribosomal protein L30, bacterial/organelle; This model describes bacterial (and organellar) ... |
4-58 | 4.43e-22 | ||
ribosomal protein L30, bacterial/organelle; This model describes bacterial (and organellar) 50S ribosomal protein L30. Homologous ribosomal proteins of the eukaryotic cytosol and of the archaea differ substantially in architecture, from bacterial L30 and also from each other, and are described by separate models. [Protein synthesis, Ribosomal proteins: synthesis and modification] Pssm-ID: 130375 Cd Length: 55 Bit Score: 79.28 E-value: 4.43e-22
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Ribosomal_L30 | pfam00327 | Ribosomal protein L30p/L7e; This family includes prokaryotic L30 and eukaryotic L7. |
4-54 | 7.62e-20 | ||
Ribosomal protein L30p/L7e; This family includes prokaryotic L30 and eukaryotic L7. Pssm-ID: 459762 [Multi-domain] Cd Length: 51 Bit Score: 73.50 E-value: 7.62e-20
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Name | Accession | Description | Interval | E-value | ||
rpmD | PRK05611 | 50S ribosomal protein L30; Reviewed |
1-59 | 3.23e-31 | ||
50S ribosomal protein L30; Reviewed Pssm-ID: 180163 Cd Length: 59 Bit Score: 102.49 E-value: 3.23e-31
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RpmD | COG1841 | Ribosomal protein L30/L7E [Translation, ribosomal structure and biogenesis]; Ribosomal protein ... |
1-58 | 4.37e-28 | ||
Ribosomal protein L30/L7E [Translation, ribosomal structure and biogenesis]; Ribosomal protein L30/L7E is part of the Pathway/BioSystem: Ribosome 50S subunit Pssm-ID: 441446 Cd Length: 58 Bit Score: 94.72 E-value: 4.37e-28
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Ribosomal_L30 | cd01658 | Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one ... |
4-57 | 1.28e-25 | ||
Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one of the smallest ribosomal proteins with a molecular mass of about 7kDa. L30 binds the 23SrRNA as well as the 5S rRNA and is one of five ribosomal proteins that mediate the interactions 5S rRNA makes with the ribosome. The eukaryotic L30 members have N- and/or C-terminal extensions not found in their prokaryotic orthologs. L30 is closely related to the ribosomal L7 protein found in eukaryotes and archaea. Pssm-ID: 100100 Cd Length: 54 Bit Score: 88.25 E-value: 1.28e-25
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rpmD_bact | TIGR01308 | ribosomal protein L30, bacterial/organelle; This model describes bacterial (and organellar) ... |
4-58 | 4.43e-22 | ||
ribosomal protein L30, bacterial/organelle; This model describes bacterial (and organellar) 50S ribosomal protein L30. Homologous ribosomal proteins of the eukaryotic cytosol and of the archaea differ substantially in architecture, from bacterial L30 and also from each other, and are described by separate models. [Protein synthesis, Ribosomal proteins: synthesis and modification] Pssm-ID: 130375 Cd Length: 55 Bit Score: 79.28 E-value: 4.43e-22
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Ribosomal_L30_like | cd00355 | Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one ... |
6-57 | 6.18e-21 | ||
Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one of the smallest ribosomal proteins with a molecular mass of about 7kDa. L30 binds the 23SrRNA as well as the 5S rRNA and is one of five ribosomal proteins that mediate the interactions 5S rRNA makes with the ribosome. The eukaryotic L30 members have N- and/or C-terminal extensions not found in their prokaryotic orthologs. L30 is closely related to the ribosomal L7 protein found in eukaryotes and archaea. Pssm-ID: 100098 [Multi-domain] Cd Length: 53 Bit Score: 76.29 E-value: 6.18e-21
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Ribosomal_L30 | pfam00327 | Ribosomal protein L30p/L7e; This family includes prokaryotic L30 and eukaryotic L7. |
4-54 | 7.62e-20 | ||
Ribosomal protein L30p/L7e; This family includes prokaryotic L30 and eukaryotic L7. Pssm-ID: 459762 [Multi-domain] Cd Length: 51 Bit Score: 73.50 E-value: 7.62e-20
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rpl30p | PRK06049 | 50S ribosomal protein L30P; Reviewed |
9-61 | 1.01e-05 | ||
50S ribosomal protein L30P; Reviewed Pssm-ID: 235683 Cd Length: 154 Bit Score: 39.79 E-value: 1.01e-05
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Ribosomal_L7_archeal_euk | cd01657 | Ribosomal protein L7, which is found in archaea and eukaryotes but not in prokaryotes, binds ... |
9-61 | 4.05e-04 | ||
Ribosomal protein L7, which is found in archaea and eukaryotes but not in prokaryotes, binds domain II of the 23S rRNA as well as the 5S rRNA and is one of five ribosomal proteins that mediate the interactions 5S rRNA makes with the ribosome. The eukaryotic L7 members have an N-terminal extension not found in the archeal L7 orthologs. L7 is closely related to the ribosomal L30 protein found in eukaryotes and prokaryotes. Pssm-ID: 100099 Cd Length: 159 Bit Score: 35.58 E-value: 4.05e-04
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Blast search parameters | ||||
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