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Conserved domains on  [gi|1214173060|ref|WP_088776156|]
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hypothetical protein [Burkholderia pseudomallei]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Tra5 super family cl34487
Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];
1-28 7.62e-07

Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];


The actual alignment was detected with superfamily member COG2801:

Pssm-ID: 442053 [Multi-domain]  Cd Length: 309  Bit Score: 42.06  E-value: 7.62e-07
                          10        20
                  ....*....|....*....|....*...
gi 1214173060   1 MIADWIQFSNRRWPHSALKMKTPAEAFA 28
Cdd:COG2801   276 AIEEYIEFYNHERPHSSLGYLTPAEYEK 303
 
Name Accession Description Interval E-value
Tra5 COG2801
Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];
1-28 7.62e-07

Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];


Pssm-ID: 442053 [Multi-domain]  Cd Length: 309  Bit Score: 42.06  E-value: 7.62e-07
                          10        20
                  ....*....|....*....|....*...
gi 1214173060   1 MIADWIQFSNRRWPHSALKMKTPAEAFA 28
Cdd:COG2801   276 AIEEYIEFYNHERPHSSLGYLTPAEYEK 303
transpos_IS3 NF033516
IS3 family transposase;
2-25 9.24e-07

IS3 family transposase;


Pssm-ID: 468052 [Multi-domain]  Cd Length: 369  Bit Score: 41.78  E-value: 9.24e-07
                          10        20
                  ....*....|....*....|....
gi 1214173060   2 IADWIQFSNRRWPHSALKMKTPAE 25
Cdd:NF033516  344 IEEYIEFYNHERPHSSLGYLTPAE 367
rve_3 pfam13683
Integrase core domain;
1-23 1.47e-04

Integrase core domain;


Pssm-ID: 433402 [Multi-domain]  Cd Length: 67  Bit Score: 34.11  E-value: 1.47e-04
                         10        20
                 ....*....|....*....|...
gi 1214173060  1 MIADWIQFSNRRWPHSALKMKTP 23
Cdd:pfam13683 45 LLAAWREDYNTERPHSSLGYRTP 67
transpos_IS481 NF033577
IS481 family transposase; null
 2-27 2.34e-04

IS481 family transposase; null


Pssm-ID: 468094 [Multi-domain]  Cd Length: 283  Bit Score: 34.87  E-value: 2.34e-04
                          10        20
                  ....*....|....*....|....*.
gi 1214173060   2 IADWIQFSNRRWPHSALKMKTPAEAF 27
Cdd:NF033577  258 LDEWLHHYNHHRPHSALGGKTPAERF 283
 
Name Accession Description Interval E-value
Tra5 COG2801
Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];
1-28 7.62e-07

Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];


Pssm-ID: 442053 [Multi-domain]  Cd Length: 309  Bit Score: 42.06  E-value: 7.62e-07
                          10        20
                  ....*....|....*....|....*...
gi 1214173060   1 MIADWIQFSNRRWPHSALKMKTPAEAFA 28
Cdd:COG2801   276 AIEEYIEFYNHERPHSSLGYLTPAEYEK 303
transpos_IS3 NF033516
IS3 family transposase;
2-25 9.24e-07

IS3 family transposase;


Pssm-ID: 468052 [Multi-domain]  Cd Length: 369  Bit Score: 41.78  E-value: 9.24e-07
                          10        20
                  ....*....|....*....|....
gi 1214173060   2 IADWIQFSNRRWPHSALKMKTPAE 25
Cdd:NF033516  344 IEEYIEFYNHERPHSSLGYLTPAE 367
rve_3 pfam13683
Integrase core domain;
1-23 1.47e-04

Integrase core domain;


Pssm-ID: 433402 [Multi-domain]  Cd Length: 67  Bit Score: 34.11  E-value: 1.47e-04
                         10        20
                 ....*....|....*....|...
gi 1214173060  1 MIADWIQFSNRRWPHSALKMKTP 23
Cdd:pfam13683 45 LLAAWREDYNTERPHSSLGYRTP 67
transpos_IS481 NF033577
IS481 family transposase; null
 2-27 2.34e-04

IS481 family transposase; null


Pssm-ID: 468094 [Multi-domain]  Cd Length: 283  Bit Score: 34.87  E-value: 2.34e-04
                          10        20
                  ....*....|....*....|....*.
gi 1214173060   2 IADWIQFSNRRWPHSALKMKTPAEAF 27
Cdd:NF033577  258 LDEWLHHYNHHRPHSALGGKTPAERF 283
Tra8 COG2826
Transposase and inactivated derivatives, IS30 family [Mobilome: prophages, transposons];
2-28 6.03e-03

Transposase and inactivated derivatives, IS30 family [Mobilome: prophages, transposons];


Pssm-ID: 442074 [Multi-domain]  Cd Length: 325  Bit Score: 31.00  E-value: 6.03e-03
                          10        20
                  ....*....|....*....|....*..
gi 1214173060   2 IADWIqfsNRRwPHSALKMKTPAEAFA 28
Cdd:COG2826   296 IADRL---NNR-PRKCLGYKTPAEVFA 318
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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