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Conserved domains on  [gi|1142774564|ref|WP_077021441|]
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CopG family ribbon-helix-helix protein [Burkholderia cenocepacia]

Protein Classification

CopG family ribbon-helix-helix protein( domain architecture ID 10008124)

CopG family ribbon-helix-helix protein may bind DNA and function as a transcriptional regulator, similar to Caulobacter vibrioides orphan antitoxin ParD2, the antitoxin component of a non-functional type II toxin-antitoxin

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PutA1 COG3905
Predicted transcriptional regulator, contains ribbon-helix-helix (RHH_1) domain [Transcription] ...
 2-77 1.93e-07

Predicted transcriptional regulator, contains ribbon-helix-helix (RHH_1) domain [Transcription];


:

Pssm-ID: 443111  Cd Length: 69  Bit Score: 44.04  E-value: 1.93e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1142774564  2 SKATYAFRIDAALKTAFSAAARAHGQTSAQLLRDFMRDYVMRQQkateydaWLNAKIERSRASANTGNLVPAVEVD 77
Cdd:COG3905    1 STTTTTVRLDDELKERLDALAAALDRSRSWLIKEAIAQYVEREE-------WREALIQEGLAAADAGEFVSHEEVE 69
 
Name Accession Description Interval E-value
PutA1 COG3905
Predicted transcriptional regulator, contains ribbon-helix-helix (RHH_1) domain [Transcription] ...
 2-77 1.93e-07

Predicted transcriptional regulator, contains ribbon-helix-helix (RHH_1) domain [Transcription];


Pssm-ID: 443111  Cd Length: 69  Bit Score: 44.04  E-value: 1.93e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1142774564  2 SKATYAFRIDAALKTAFSAAARAHGQTSAQLLRDFMRDYVMRQQkateydaWLNAKIERSRASANTGNLVPAVEVD 77
Cdd:COG3905    1 STTTTTVRLDDELKERLDALAAALDRSRSWLIKEAIAQYVEREE-------WREALIQEGLAAADAGEFVSHEEVE 69
 
Name Accession Description Interval E-value
PutA1 COG3905
Predicted transcriptional regulator, contains ribbon-helix-helix (RHH_1) domain [Transcription] ...
 2-77 1.93e-07

Predicted transcriptional regulator, contains ribbon-helix-helix (RHH_1) domain [Transcription];


Pssm-ID: 443111  Cd Length: 69  Bit Score: 44.04  E-value: 1.93e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1142774564  2 SKATYAFRIDAALKTAFSAAARAHGQTSAQLLRDFMRDYVMRQQkateydaWLNAKIERSRASANTGNLVPAVEVD 77
Cdd:COG3905    1 STTTTTVRLDDELKERLDALAAALDRSRSWLIKEAIAQYVEREE-------WREALIQEGLAAADAGEFVSHEEVE 69
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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