|
Name |
Accession |
Description |
Interval |
E-value |
| DadA |
COG0665 |
Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism]; |
9-415 |
1.39e-85 |
|
Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];
Pssm-ID: 440429 [Multi-domain] Cd Length: 364 Bit Score: 265.23 E-value: 1.39e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754538199 9 VAVVGAGVIGASIAFELQRRGFEVTLIDKGEPGRGTSFGNmasialdfaAGsgpstwkkipgwlldpegpvWLRPSYAAR 88
Cdd:COG0665 5 VVVIGGGIAGLSTAYHLARRGLDVTVLERGRPGSGASGRN---------AG--------------------QLRPGLAAL 55
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754538199 89 MLPWFLRflaagrpsrlreiedagmsLSHRALGDFRGMLEAIGAPELMTEEGCLAIYETEAEFAADRGHLAMMQRYGLEF 168
Cdd:COG0665 56 ADRALVR-------------------LAREALDLWRELAAELGIDCDFRRTGVLYLARTEAELAALRAEAEALRALGLPV 116
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754538199 169 EVLSNGAIQYYEPTL-SPAIAKAVLLPDNKSIrDPYKLVVKLTDAAKAAGTTFVSGT-VRNIERRGDGTAVVLLEDGRrI 246
Cdd:COG0665 117 ELLDAAELREREPGLgSPDYAGGLYDPDDGHV-DPAKLVRALARAARAAGVRIREGTpVTGLEREGGRVTGVRTERGT-V 194
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754538199 247 EADSVVLAAGVHTRFLAEKLGEPIPLETERGYHTQIMKPGIEMRYSVIWPHRAFMVTPTAGGIRVGGNVELAGLDAAPDF 326
Cdd:COG0665 195 RADAVVLAAGAWSARLLPMLGLRLPLRPVRGYVLVTEPLPDLPLRPVLDDTGVYLRPTADGRLLVGGTAEPAGFDRAPTP 274
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754538199 327 RRPRVLVRHAQRALPGLK-VEETTEWMGHRPALPDTIPIISPSSKLPGVFYATGHGHLGLTFSATTALVIADMVTGLKPS 405
Cdd:COG0665 275 ERLEALLRRLRRLFPALAdAEIVRAWAGLRPMTPDGLPIIGRLPGAPGLYVATGHGGHGVTLAPAAGRLLADLILGGEPP 354
|
410
....*....|
gi 754538199 406 LDMTPFRIDR 415
Cdd:COG0665 355 LDLAPFSPDR 364
|
|
| PRK00711 |
PRK00711 |
D-amino acid dehydrogenase; |
9-416 |
3.40e-52 |
|
D-amino acid dehydrogenase;
Pssm-ID: 234819 [Multi-domain] Cd Length: 416 Bit Score: 180.00 E-value: 3.40e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754538199 9 VAVVGAGVIGASIAFELQRRGFEVTLIDK-GEPGRGTSFGNMASIALDFAAG-SGPSTWKKIPGWLLDPEGPVWLRPSYA 86
Cdd:PRK00711 3 VVVLGSGVIGVTSAWYLAQAGHEVTVIDRqPGPALETSFANAGQISPGYAAPwAAPGVPLKAIKWLFQRHAPLAIRPDGD 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754538199 87 ARMLPWFLRFLAAGRPSRLrEIEDAGMSlshrALGDF-RGMLEAIGAPELMTEE----GCLAIYETEAEFAADRGHLAMM 161
Cdd:PRK00711 83 PFQLRWMWQMLRNCTASRY-AVNKSRMV----RLAEYsRDCLKALRAETGIQYEgrqgGTLQLFRTQQQLDAAAKDIAVL 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754538199 162 QRYGLEFEVLSNGAIQYYEPTLSPA---IAKAVLLPDNKSiRDPYKLVVKLTDAAKAAGTTFVSGT-VRNIERRGDGTAV 237
Cdd:PRK00711 158 EEAGVPYELLDRDELAAVEPALAGVrhkLVGGLRLPNDET-GDCQLFTQRLAAMAEQLGVKFRFNTpVDGLLVEGGRITG 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754538199 238 VLLEDGrRIEADSVVLAAGVHTRFLAEKLGEPIPLETERGYHTQI------MKPGIemrySVIWPHRAFMVTPTAGGIRV 311
Cdd:PRK00711 237 VQTGGG-VITADAYVVALGSYSTALLKPLGVDIPVYPLKGYSLTVpitdedRAPVS----TVLDETYKIAITRFDDRIRV 311
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754538199 312 GGNVELAGLDAAPDFRRPRVLVRHAQRALPG-LKVEETTEWMGHRPALPDTIPIISPsSKLPGVFYATGHGHLGLTFSAT 390
Cdd:PRK00711 312 GGMAEIVGFDLRLDPARRETLEMVVRDLFPGgGDLSQATFWTGLRPMTPDGTPIVGA-TRYKNLWLNTGHGTLGWTMACG 390
|
410 420
....*....|....*....|....*.
gi 754538199 391 TALVIADMVTGLKPSLDMTPFRIDRY 416
Cdd:PRK00711 391 SGQLLADLISGRKPAIDADDLSVARY 416
|
|
| PRK12409 |
PRK12409 |
D-amino acid dehydrogenase small subunit; Provisional |
7-399 |
9.68e-49 |
|
D-amino acid dehydrogenase small subunit; Provisional
Pssm-ID: 237093 [Multi-domain] Cd Length: 410 Bit Score: 170.59 E-value: 9.68e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754538199 7 KSVAVVGAGVIGASIAFELQRRGFEVTLIDKGE-PGRGTSFGN----MASIAldfAAGSGPSTWKKIPGWLLDPEGPVWL 81
Cdd:PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRyAAMETSFANggqlSASNA---EVWNHWATVLKGLKWMLRKDAPLLL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754538199 82 RPSYAARMLPWFLRFLAAGRPSRLREIEDAGMSLSHRAlgDFRGMLEAIGAPELMTEEGCLAIYETEAEFAADRGHLAMM 161
Cdd:PRK12409 79 NPKPSWHKYSWLAEFLAHIPNYRANTIETVRLAIAARK--HLFDIAEREGIDFDLERRGILHIYHDKAGFDHAKRVNALL 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754538199 162 QRYGLEFEVLSNGAIQYYEPTLSPAIAKAVLLPDNkSIRDPYKLVVKLTDAAKAAGTTFVSGT-VRNIERRGDGTAVVLL 240
Cdd:PRK12409 157 AEGGLERRAVTPEEMRAIEPTLTGEYYGGYYTPSD-STGDIHKFTTGLAAACARLGVQFRYGQeVTSIKTDGGGVVLTVQ 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754538199 241 EDG----RRIEADSVVLAAGVHTRFLAEKLGEPIPLETERGYHTQIMKPGIEMRYSVIW----PHRAFMVTPTAGG--IR 310
Cdd:PRK12409 236 PSAehpsRTLEFDGVVVCAGVGSRALAAMLGDRVNVYPVKGYSITVNLDDEASRAAAPWvsllDDSAKIVTSRLGAdrFR 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754538199 311 VGGNVELAGLDAapDFR--RPRVLVRHAQRALPGLKVEETTEWMGHRPALPDTIPIISPSSKlPGVFYATGHGHLGLTFS 388
Cdd:PRK12409 316 VAGTAEFNGYNR--DIRadRIRPLVDWVRRNFPDVSTRRVVPWAGLRPMMPNMMPRVGRGRR-PGVFYNTGHGHLGWTLS 392
|
410
....*....|.
gi 754538199 389 ATTALVIADMV 399
Cdd:PRK12409 393 AATADLVAQVV 403
|
|
| DAO |
pfam01266 |
FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: ... |
9-398 |
2.31e-48 |
|
FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.
Pssm-ID: 426168 [Multi-domain] Cd Length: 339 Bit Score: 167.96 E-value: 2.31e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754538199 9 VAVVGAGVIGASIAFELQRRGFEVTLIDKG-EPGRGTSFGNMAsialdfaagsgpstwkkipgwlldpegpvWLRPSYAA 87
Cdd:pfam01266 2 VVVIGGGIVGLSTAYELARRGLSVTLLERGdDPGSGASGRNAG-----------------------------LIHPGLRY 52
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754538199 88 RMLPWFLRflaagrpsrlreiedagmsLSHRALGDFRGMLEAIGAPELMTEEGCLAIYETEAEFAADRgHLAMMQRYGLE 167
Cdd:pfam01266 53 LEPSELAR-------------------LALEALDLWEELEEELGIDCGFRRCGVLVLARDEEEEALEK-LLAALRRLGVP 112
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754538199 168 FEVLSNGAIQYYEPtLSPAIAKAVLLPDNKSIrDPYKLVVKLTDAAKAAGTTFVSGT-VRNIERRGDGTAVVLLEdgrri 246
Cdd:pfam01266 113 AELLDAEELRELEP-LLPGLRGGLFYPDGGHV-DPARLLRALARAAEALGVRIIEGTeVTGIEEEGGVWGVVTTG----- 185
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754538199 247 EADSVVLAAGVHTRFLAeKLGEPIPLETERGYHTQIMKP-----GIEMRYSVIWPHRAFMVTPTAGGIRVGGNVELAGLD 321
Cdd:pfam01266 186 EADAVVNAAGAWADLLA-LPGLRLPVRPVRGQVLVLEPLpeallILPVPITVDPGRGVYLRPRADGRLLLGGTDEEDGFD 264
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 754538199 322 -AAPDFRRPRVLVRHAQRALPGLkVEETTEWMGHRPaLPDTIPIISPSsKLPGVFYATGHGHLGLTFSATTALVIADM 398
Cdd:pfam01266 265 dPTPDPEEIEELLEAARRLFPAL-ADIERAWAGLRP-LPDGLPIIGRP-GSPGLYLATGHGGHGLTLAPGIGKLLAEL 339
|
|
| thiamin_ThiO |
TIGR02352 |
glycine oxidase ThiO; This family consists of the homotetrameric, FAD-dependent glycine ... |
23-401 |
3.13e-32 |
|
glycine oxidase ThiO; This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein. [Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine]
Pssm-ID: 274092 [Multi-domain] Cd Length: 337 Bit Score: 124.40 E-value: 3.13e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754538199 23 FELQRRGFEVTLIDKGEPGRGTSFgnmasialdFAAGsgpstwkkipgwLLDPEGPVWLRP-------SYAARMLPWFLR 95
Cdd:TIGR02352 1 WELAKRGHSVTLFDRDPMGGGASW---------AAAG------------MLAPHAECEYAEdplfdlaLESLRLYPEWLE 59
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754538199 96 flaagrpsRLREIedAGMSLSHRalgdfrgmleaigapelmtEEGCLAIYETEAEFAADRGHLAMMQRYGLEFEVLSNGA 175
Cdd:TIGR02352 60 --------ALKEL--TGLDTGYH-------------------QCGTLVVAFDEDDVEHLRQLADLQSATGMEVEWLSGRA 110
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754538199 176 IQYYEPTLSPAIAKAVLLPDNKSIrDPYKLVVKLTDAAKAAGTTFVSGT-VRNIERRGDGTAVVLLEDGRrIEADSVVLA 254
Cdd:TIGR02352 111 LRRLEPYLSGGIRGAVFYPDDAHV-DPRALLKALEKALEKLGVEIIEHTeVQHIEIRGEKVTAIVTPSGD-VQADQVVLA 188
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754538199 255 AGV-----HTRFLAEKLGEPIPLETERGYHtqimkPGIEMRYSViwPHRAFMVTPTAGG-IRVGGNVELAGLDAAPDFRR 328
Cdd:TIGR02352 189 AGAwagelLPLPLRPVRGQPLRLEAPAVPL-----LNRPLRAVV--YGRRVYIVPRRDGrLVVGATMEESGFDTTPTLGG 261
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 754538199 329 PRVLVRHAQRALPGLK---VEETteWMGHRPALPDTIPIISPSSKLPGVFYATGHGHLGLTFSATTALVIADMVTG 401
Cdd:TIGR02352 262 IKELLRDAYTILPALKearLLET--WAGLRPGTPDNLPYIGEHPEDRRLLIATGHYRNGILLAPATAEVIADLILG 335
|
|
| LhgO |
COG0579 |
L-2-hydroxyglutarate oxidase LhgO [Carbohydrate transport and metabolism]; |
9-402 |
6.70e-13 |
|
L-2-hydroxyglutarate oxidase LhgO [Carbohydrate transport and metabolism];
Pssm-ID: 440344 [Multi-domain] Cd Length: 418 Bit Score: 69.79 E-value: 6.70e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754538199 9 VAVVGAGVIGASIAFELQRR-GFEVTLIDKG-EPGRGTSFGNMASI--ALDFAAGSgpstwkkipgwlldpegpvwLRPS 84
Cdd:COG0579 7 VVIIGAGIVGLALARELSRYeDLKVLVLEKEdDVAQESSGNNSGVIhaGLYYTPGS--------------------LKAR 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754538199 85 YA---ARMLPWFLRFLAagrpsrlreiedagmsLSHRALGdfrGMLEAIGAPELmteEGCLAIYETeaefaadrghlamM 161
Cdd:COG0579 67 LCvegNELFYELCRELG----------------IPFKRCG---KLVVATGEEEV---AFLEKLYER-------------G 111
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754538199 162 QRYGLE-FEVLSNGAIQYYEPTLSPAIAKAVLLPDNkSIRDPYKLVVKLTDAAKAAGTTFVSGT-VRNIERRGDGTAVVL 239
Cdd:COG0579 112 KANGVPgLEILDREELRELEPLLSDEGVAALYSPST-GIVDPGALTRALAENAEANGVELLLNTeVTGIEREGDGWEVTT 190
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754538199 240 leDGRRIEADSVVLAAGVHTRFLAEKLGEP-----IPLeteRG-YHtqIMKPGIEM----RYSVIWPHRAFM---VTPT- 305
Cdd:COG0579 191 --NGGTIRARFVINAAGLYADRLAQMAGIGkdfgiFPV---KGeYL--VLDKPAELvnakVYPVPDPGAPFLgvhLTRTi 263
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754538199 306 AGGIRVGGNVELA------GLDAAPDFRRPRVLVRHAQRALPGLKVEETTEWMGHR--------PALP--DTIP------ 363
Cdd:COG0579 264 DGNLLFGPNAVFVpkkedsLLDLFESLRFPNFWPMLAKNLLTKYLESVTSLSKEAFlealrkyvPELPdeDLIPafagir 343
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|
gi 754538199 364 --IISP-------SSKLPGVFyatghgHLGLTFS--ATTALVIADMVTGL 402
Cdd:COG0579 344 aqIIKPdgdfvieEADDPGSI------HVLGIESpgATSALAIAEHVAEL 387
|
|
| soxA_mon |
TIGR01377 |
sarcosine oxidase, monomeric form; Sarcosine oxidase catalyzes the oxidative demethylation of ... |
9-416 |
1.23e-11 |
|
sarcosine oxidase, monomeric form; Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms [Energy metabolism, Amino acids and amines]
Pssm-ID: 130444 [Multi-domain] Cd Length: 380 Bit Score: 65.62 E-value: 1.23e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754538199 9 VAVVGAGVIGASIAFELQRRGFEVTLIDKGEP--GRGTSFGNMASIALDFaagsgpstwkkipgwlldPEGpvwlrpsYA 86
Cdd:TIGR01377 3 VIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDLphSRGSSHGQSRIIRKAY------------------PED-------FY 57
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754538199 87 ARMLPWFLRFLAAGRpsrlreiEDAGMSLsHRALGDF-RGMLEAIGAPELMteegclaiyeteaefaadrghlAMMQRYG 165
Cdd:TIGR01377 58 TPMMLECYQLWAQLE-------KEAGTKL-HRQTGLLlLGPKENQFLKTIQ----------------------ATLSRHG 107
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754538199 166 LEFEVLSNGAIQYYEPTLSPAIAKAVLLPDNKSIRDPYKLVVKLTDAAKAAGTTFVSGT-VRNIERRGDgtAVVLLEDGR 244
Cdd:TIGR01377 108 LEHELLSSKQLKQRFPNIRVPRNEVGLLDPNGGVLYAEKALRALQELAEAHGATVRDGTkVVEIEPTEL--LVTVKTTKG 185
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754538199 245 RIEADSVVLAAGVHTRFLAEKLGEPIPLETER---GYHtQIMKPGiEMRYSVIWPhrAFMVTPTAGGIRVGGNVELAGL- 320
Cdd:TIGR01377 186 SYQANKLVVTAGAWTSKLLSPLGIEIPLQPLRinvCYW-REKEPG-SYGVSQAFP--CFLVLGLNPHIYGLPSFEYPGLm 261
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754538199 321 --------DAAPDfRRPR----------VLVRHAQRALPGLKVEETTEWMGHRPALPDTIPIISPSSKLPGVFYATG-HG 381
Cdd:TIGR01377 262 kvyyhhgqQIDPD-ERDCpfgadiedvqILRKFVRDHLPGLNGEPKKGEVCMYTNTPDEHFVIDLHPKYDNVVIGAGfSG 340
|
410 420 430
....*....|....*....|....*....|....*
gi 754538199 382 HlGLTFSATTALVIADMVTGLKPSLDMTPFRIDRY 416
Cdd:TIGR01377 341 H-GFKLAPVVGKILAELAMKLKPSYDLAIFSLNRF 374
|
|
| mnmC |
PRK01747 |
bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent ... |
7-48 |
2.89e-07 |
|
bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC;
Pssm-ID: 234978 [Multi-domain] Cd Length: 662 Bit Score: 52.54 E-value: 2.89e-07
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 754538199 7 KSVAVVGAGVIGASIAFELQRRGFEVTLIDK-GEPGRGTSfGN 48
Cdd:PRK01747 261 RDAAIIGGGIAGAALALALARRGWQVTLYEAdEAPAQGAS-GN 302
|
|
| TrxB |
COG0492 |
Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]; |
205-275 |
1.59e-06 |
|
Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440258 [Multi-domain] Cd Length: 305 Bit Score: 49.35 E-value: 1.59e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 754538199 205 LVVKLTDAAKAAGTTFVSGTVRNIERRGDGTaVVLLEDGRRIEADSVVLAAGVHTRFLaeklgePIPLETE 275
Cdd:COG0492 59 LAERLREQAERFGAEILLEEVTSVDKDDGPF-RVTTDDGTEYEAKAVIIATGAGPRKL------GLPGEEE 122
|
|
| solA |
PRK11259 |
N-methyl-L-tryptophan oxidase; |
9-415 |
2.56e-06 |
|
N-methyl-L-tryptophan oxidase;
Pssm-ID: 236887 [Multi-domain] Cd Length: 376 Bit Score: 49.06 E-value: 2.56e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754538199 9 VAVVGAGVIGASIAFELQRRGFEVTLIDKGEPG--RGTSFGNMASIALdfAAGSGPStwkkipgwlldpegpvwlrpsYa 86
Cdd:PRK11259 6 VIVIGLGSMGSAAGYYLARRGLRVLGLDRFMPPhqQGSSHGDTRIIRH--AYGEGPA---------------------Y- 61
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754538199 87 armLPWFLRflaagrpsrlreiedagmslSHRALGDfrgmLEAIGAPELMTEEGCLAIYETEAEFAAdrGHLAMMQRYGL 166
Cdd:PRK11259 62 ---VPLVLR--------------------AQELWRE----LERESGEPLFVRTGVLNLGPADSDFLA--NSIRSARQHGL 112
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754538199 167 EFEVLSNGAIQYYEPTLSPAI-AKAVLLPDNKSIRdPYKLVVKLTDAAKAAGTTFVSGT-VRNIERRGDGTAVVLleDGR 244
Cdd:PRK11259 113 PHEVLDAAEIRRRFPQFRLPDgYIALFEPDGGFLR-PELAIKAHLRLAREAGAELLFNEpVTAIEADGDGVTVTT--ADG 189
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754538199 245 RIEADSVVLAAGVHTRFLAEKLGepIPLETERgyhtQIM---KPgiEMRYSVIWPHRAFMVTPTAG----GIRVGGN--V 315
Cdd:PRK11259 190 TYEAKKLVVSAGAWVKDLLPPLE--LPLTPVR----QVLawfQA--DGRYSEPNRFPAFIWEVPDGdqyyGFPAENGpgL 261
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754538199 316 ELA-----GLDAAPDFRRPRVLVR--------HAQRALPGLKveettewmghrPAL----------PDTIPIISPSSKLP 372
Cdd:PRK11259 262 KIGkhnggQEITSPDERDRFVTVAedgaelrpFLRNYLPGVG-----------PCLrgaactytntPDEHFIIDTLPGHP 330
|
410 420 430 440
....*....|....*....|....*....|....*....|....
gi 754538199 373 GVFYATG-HGHlGLTFSATTALVIADMVTGLKPSLDMTPFRIDR 415
Cdd:PRK11259 331 NVLVASGcSGH-GFKFASVLGEILADLAQDGTSDFDLSPFSLSR 373
|
|
| NAD_binding_8 |
pfam13450 |
NAD(P)-binding Rossmann-like domain; |
11-55 |
5.97e-06 |
|
NAD(P)-binding Rossmann-like domain;
Pssm-ID: 433218 [Multi-domain] Cd Length: 67 Bit Score: 43.67 E-value: 5.97e-06
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 754538199 11 VVGAGVIGASIAFELQRRGFEVTLIDKGE-PGrgtsfGNMASIALD 55
Cdd:pfam13450 1 IVGAGLAGLVAAALLAKRGFRVLVLEKRDrLG-----GNAYSYRVP 41
|
|
| COG3349 |
COG3349 |
Uncharacterized protein, contains NAD-binding domain and a Fe-S cluster [General function ... |
7-275 |
6.42e-06 |
|
Uncharacterized protein, contains NAD-binding domain and a Fe-S cluster [General function prediction only];
Pssm-ID: 442577 [Multi-domain] Cd Length: 445 Bit Score: 47.93 E-value: 6.42e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754538199 7 KSVAVVGAGVIGASIAFELQRRGFEVTLIDKGEP--GRGTSF-----------GN-------------MASI-------- 52
Cdd:COG3349 4 PRVVVVGGGLAGLAAAVELAEAGFRVTLLEARPRlgGRARSFpdpdtglpidnGQhvllgcyrntldlLRRIgaadnlvg 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754538199 53 --ALDFAAGSGpstwkkiPGWLLDPEG---PVWL-RPSYAARMLPW-----FLRFLAAGRPSRLREIEDAgmslshralg 121
Cdd:COG3349 84 pePLQFPLPGG-------RRWTLRAPRlpaPLHLlRALLRAPGLSLadrlaLLRLLTACRERRWRELDDI---------- 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754538199 122 DFRGMLEAIGAPELMTEE----GCLAIYETEAEfAADRGHLAMMQRYGLefevLSNGAiqyyeptlspaiAKAVLLPdnk 197
Cdd:COG3349 147 SVADWLRRHGQSPRLIRRlwepLLLAALNTPPE-QASARLALTVLRETL----LAGPA------------ASDLLVP--- 206
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754538199 198 siRDPY--KLVVKLTDAAKAAGTTFVSGT-VRNIERRGDGTAVVLLEDGRRIEADSVVLAAGVHT--RFLAEKLGEPI-- 270
Cdd:COG3349 207 --RGPLseLFVDPALAYLEARGGEVRLGTrVRALEFDGGRVTGLVLADGETVPADAVVLAVPPEVaaRLLPELARLPElg 284
|
....*...
gi 754538199 271 ---PLETE 275
Cdd:COG3349 285 llaPLEYS 292
|
|
| NAD_binding_9 |
pfam13454 |
FAD-NAD(P)-binding; |
10-256 |
7.06e-06 |
|
FAD-NAD(P)-binding;
Pssm-ID: 433222 [Multi-domain] Cd Length: 155 Bit Score: 45.73 E-value: 7.06e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754538199 10 AVVGAGVIGASIAFEL----QRRGFEVTLIDKGEPGRGTSFgnmasialdfaagsgpstwkkipgwllDPEGPVWLRPSY 85
Cdd:pfam13454 1 AIVGGGPSGLALLERLlaraPKRPLEITLFDPSPPGAGGVY---------------------------RTDQSPEHLLNV 53
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754538199 86 AArmlpwflrflaagrpsrlreiedAGMSLSHRALGDFRGMLEAIGAPELMTEegclaiyeteaefaADRGHLAMMQRYG 165
Cdd:pfam13454 54 PA-----------------------SRMSLFPDDPPHFLEWLRARGALDEAPG--------------LDPDDFPPRALYG 96
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754538199 166 lefevlsngaiQYYEPTLSPAIAKAvllPDNKSIRdpyklvvkltdaakaagttFVSGTVRNIERRGDGtAVVLLEDGRR 245
Cdd:pfam13454 97 -----------RYLRDRFEEALARA---PAGVTVR-------------------VHRARVTDLRPRGDG-YRVLLADGRT 142
|
250
....*....|.
gi 754538199 246 IEADSVVLAAG 256
Cdd:pfam13454 143 LAADAVVLATG 153
|
|
| NirB |
COG1251 |
NAD(P)H-nitrite reductase, large subunit [Energy production and conversion]; |
209-277 |
1.80e-05 |
|
NAD(P)H-nitrite reductase, large subunit [Energy production and conversion];
Pssm-ID: 440863 [Multi-domain] Cd Length: 402 Bit Score: 46.67 E-value: 1.80e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 754538199 209 LTDAAKAAGTTFVSGT-VRNIERRGDGTAVVLlEDGRRIEADSVVLAAGVHTRF-LAEKLGepipLETERG 277
Cdd:COG1251 190 LQRLLEALGVEVRLGTgVTEIEGDDRVTGVRL-ADGEELPADLVVVAIGVRPNTeLARAAG----LAVDRG 255
|
|
| 3HCDH_N |
pfam02737 |
3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; This family also includes lambda ... |
8-36 |
1.93e-05 |
|
3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; This family also includes lambda crystallin.
Pssm-ID: 397037 [Multi-domain] Cd Length: 180 Bit Score: 44.84 E-value: 1.93e-05
10 20
....*....|....*....|....*....
gi 754538199 8 SVAVVGAGVIGASIAFELQRRGFEVTLID 36
Cdd:pfam02737 1 KVAVIGAGTMGAGIAQVFALAGLEVVLVD 29
|
|
| GltD |
COG0493 |
NADPH-dependent glutamate synthase beta chain or related oxidoreductase [Amino acid transport ... |
2-41 |
2.61e-05 |
|
NADPH-dependent glutamate synthase beta chain or related oxidoreductase [Amino acid transport and metabolism, General function prediction only]; NADPH-dependent glutamate synthase beta chain or related oxidoreductase is part of the Pathway/BioSystem: Glutamine biosynthesis
Pssm-ID: 440259 [Multi-domain] Cd Length: 434 Bit Score: 46.28 E-value: 2.61e-05
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 754538199 2 ADETKKSVAVVGAGVIGASIAFELQRRGFEVTLIDKG-EPG 41
Cdd:COG0493 117 APRTGKKVAVVGSGPAGLAAAYQLARAGHEVTVFEALdKPG 157
|
|
| FadB |
COG1250 |
3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]; 3-hydroxyacyl-CoA ... |
7-36 |
5.98e-05 |
|
3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]; 3-hydroxyacyl-CoA dehydrogenase is part of the Pathway/BioSystem: Fatty acid biosynthesis
Pssm-ID: 440862 [Multi-domain] Cd Length: 281 Bit Score: 44.33 E-value: 5.98e-05
10 20 30
....*....|....*....|....*....|
gi 754538199 7 KSVAVVGAGVIGASIAFELQRRGFEVTLID 36
Cdd:COG1250 3 KKVAVIGAGTMGAGIAAVFANAGYEVVLLD 32
|
|
| FixC |
COG0644 |
Dehydrogenase (flavoprotein) [Energy production and conversion]; |
209-278 |
8.22e-05 |
|
Dehydrogenase (flavoprotein) [Energy production and conversion];
Pssm-ID: 440409 [Multi-domain] Cd Length: 281 Bit Score: 44.19 E-value: 8.22e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 754538199 209 LTDAAKAAGTTFVSGT-VRNIERRgDGTAVVLLEDGRRIEADSVVLAAGVHTRfLAEKLGEPIPLETERGY 278
Cdd:COG0644 92 LAEQAEEAGAEVRTGTrVTDVLRD-DGRVVVRTGDGEEIRADYVVDADGARSL-LARKLGLKRRSDEPQDY 160
|
|
| PRK11749 |
PRK11749 |
dihydropyrimidine dehydrogenase subunit A; Provisional |
2-37 |
1.79e-04 |
|
dihydropyrimidine dehydrogenase subunit A; Provisional
Pssm-ID: 236967 [Multi-domain] Cd Length: 457 Bit Score: 43.63 E-value: 1.79e-04
10 20 30
....*....|....*....|....*....|....*.
gi 754538199 2 ADETKKSVAVVGAGVIGASIAFELQRRGFEVTLIDK 37
Cdd:PRK11749 136 APKTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEA 171
|
|
| HemY |
COG1232 |
Protoporphyrinogen oxidase HemY/PPOX [Coenzyme transport and metabolism]; Protoporphyrinogen ... |
6-271 |
2.80e-04 |
|
Protoporphyrinogen oxidase HemY/PPOX [Coenzyme transport and metabolism]; Protoporphyrinogen oxidase HemY/PPOX is part of the Pathway/BioSystem: Heme biosynthesis
Pssm-ID: 440845 [Multi-domain] Cd Length: 443 Bit Score: 42.90 E-value: 2.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754538199 6 KKSVAVVGAGVIGASIAFELQRRGFEVTLIDKGE-PGrgtsfGNMASIALDfaagsgpstwkkipGWLLD--PEgpvwlr 82
Cdd:COG1232 1 MKRVAVIGGGIAGLTAAYRLAKAGHEVTVLEASDrVG-----GLIRTVEVD--------------GFRIDrgPH------ 55
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754538199 83 pSYAARmLPWFLRFL-----------AAGRPS------RLREIEDAGMSLSHRAL----GDFRGMLEAIGAPELMTEEGC 141
Cdd:COG1232 56 -SFLTR-DPEVLELLrelglgdelvwPNTRKSyiyyggKLHPLPQGPLALLRSPLlslaGKLRALLELLAPRRPPGEDES 133
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754538199 142 LA----------IYE------TEAEFAADRGHL---AMMQR---YGLEFEVLSNGAIQyyepTLSPAIAKAVLLpdnkSI 199
Cdd:COG1232 134 LAefvrrrfgreVYErlveplLEGVYAGDPDELsadWAFPRlkrLELEHGSLIKGALA----LRKGAKAGEVFG----YL 205
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 754538199 200 RD-PYKLVVKLTDAAKAAgtTFVSGT-VRNIERRGDGTAVVlLEDGRRIEADSVVLAAGVHTrfLAEKLGEPIP 271
Cdd:COG1232 206 RGgLGTLVEALAEALEAG--EIRLGTrVTAIEREGGGWRVT-TSDGETIEADAVVSATPAPA--LARLLAPLPP 274
|
|
| HpnW_proposed |
TIGR03364 |
FAD dependent oxidoreductase TIGR03364; This clade of FAD dependent oxidoreductases (members ... |
8-48 |
3.22e-04 |
|
FAD dependent oxidoreductase TIGR03364; This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Pssm-ID: 132407 [Multi-domain] Cd Length: 365 Bit Score: 42.67 E-value: 3.22e-04
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 754538199 8 SVAVVGAGVIGASIAFELQRRGFEVTLIDKGEPGRGTSFGN 48
Cdd:TIGR03364 2 DLIIVGAGILGLAHAYAAARRGLSVTVIERSSRAQGASVRN 42
|
|
| Pyr_redox_2 |
pfam07992 |
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II ... |
7-278 |
3.32e-04 |
|
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.
Pssm-ID: 400379 [Multi-domain] Cd Length: 301 Bit Score: 42.31 E-value: 3.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754538199 7 KSVAVVGAGVIGASIAFELQRRGFEVTLIDKGepGRGTSFGNMASIALDFAAGSGP--STWKKIPGWLLDPEGPvwLRPS 84
Cdd:pfam07992 1 YDVVVIGGGPAGLAAALTLAQLGGKVTLIEDE--GTCPYGGCVLSKALLGAAEAPEiaSLWADLYKRKEEVVKK--LNNG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754538199 85 YAarmlpWFLR------FLAAGRPSRLREIEDAGMSLSHRALgdfrgmLEAIGA-PELMTEEGclaiYETEAEFA----- 152
Cdd:pfam07992 77 IE-----VLLGtevvsiDPGAKKVVLEELVDGDGETITYDRL------VIATGArPRLPPIPG----VELNVGFLvrtld 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754538199 153 -ADRGHLAMMQRY---------GLEFevlsngAIQyyeptLSPAIAKAVLLPDNKSIRDPYKLVV--KLTDAAKAAGTTF 220
Cdd:pfam07992 142 sAEALRLKLLPKRvvvvgggyiGVEL------AAA-----LAKLGKEVTLIEALDRLLRAFDEEIsaALEKALEKNGVEV 210
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 754538199 221 VSGT-VRNIERRGDGtAVVLLEDGRRIEADSVVLAAGVHTR-FLAEKLGEPIpleTERGY 278
Cdd:pfam07992 211 RLGTsVKEIIGDGDG-VEVILKDGTEIDADLVVVAIGRRPNtELLEAAGLEL---DERGG 266
|
|
| TrkA |
COG0569 |
Trk/Ktr K+ transport system regulatory component TrkA/KtrA/KtrC, RCK domain [Inorganic ion ... |
3-37 |
3.35e-04 |
|
Trk/Ktr K+ transport system regulatory component TrkA/KtrA/KtrC, RCK domain [Inorganic ion transport and metabolism, Signal transduction mechanisms];
Pssm-ID: 440335 [Multi-domain] Cd Length: 296 Bit Score: 42.36 E-value: 3.35e-04
10 20 30
....*....|....*....|....*....|....*
gi 754538199 3 DETKKSVAVVGAGVIGASIAFELQRRGFEVTLIDK 37
Cdd:COG0569 92 KKLKMHVIIIGAGRVGRSLARELEEEGHDVVVIDK 126
|
|
| PRK12771 |
PRK12771 |
putative glutamate synthase (NADPH) small subunit; Provisional |
2-39 |
4.07e-04 |
|
putative glutamate synthase (NADPH) small subunit; Provisional
Pssm-ID: 237198 [Multi-domain] Cd Length: 564 Bit Score: 42.55 E-value: 4.07e-04
10 20 30
....*....|....*....|....*....|....*...
gi 754538199 2 ADETKKSVAVVGAGVIGASIAFELQRRGFEVTLIDKGE 39
Cdd:PRK12771 133 APDTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGP 170
|
|
| FAD_binding_2 |
pfam00890 |
FAD binding domain; This family includes members that bind FAD. This family includes the ... |
9-125 |
6.14e-04 |
|
FAD binding domain; This family includes members that bind FAD. This family includes the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase.
Pssm-ID: 395718 [Multi-domain] Cd Length: 398 Bit Score: 41.89 E-value: 6.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754538199 9 VAVVGAGVIGASIAFELQRRGFEVTLIDKGEPGRGTSFgnMASIALDfAAGSGPStwkkipgwlLDPEGPVWLrPSYAAR 88
Cdd:pfam00890 2 VLVIGGGLAGLAAALAAAEAGLKVAVVEKGQPFGGATA--WSSGGID-ALGNPPQ---------GGIDSPELH-PTDTLK 68
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 754538199 89 MLPWFL-----RFLAAGRPSRLREIEDAGMSLSHRALGDFRG 125
Cdd:pfam00890 69 GLDELAdhpyvEAFVEAAPEAVDWLEALGVPFSRTEDGHLDL 110
|
|
| Ndh |
COG1252 |
NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]; |
200-261 |
8.91e-04 |
|
NADH dehydrogenase, FAD-containing subunit [Energy production and conversion];
Pssm-ID: 440864 [Multi-domain] Cd Length: 386 Bit Score: 41.27 E-value: 8.91e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 754538199 200 RDPYKLVVKLTDAAKAAGTTFVSGTVRNI--ERRgdgtaVVLLEDGRRIEADSVVLAAGVHTRF 261
Cdd:COG1252 53 LSPDDIAIPLRELLRRAGVRFIQGEVTGIdpEAR-----TVTLADGRTLSYDYLVIATGSVTNF 111
|
|
| PRK04965 |
PRK04965 |
NADH:flavorubredoxin reductase NorW; |
7-36 |
9.81e-04 |
|
NADH:flavorubredoxin reductase NorW;
Pssm-ID: 179902 [Multi-domain] Cd Length: 377 Bit Score: 41.06 E-value: 9.81e-04
10 20 30
....*....|....*....|....*....|
gi 754538199 7 KSVAVVGAGVIGASIAFELQRRGFEVTLID 36
Cdd:PRK04965 142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVD 171
|
|
| HdrA |
COG1148 |
Heterodisulfide reductase, subunit A (polyferredoxin) [Energy production and conversion]; |
213-257 |
1.03e-03 |
|
Heterodisulfide reductase, subunit A (polyferredoxin) [Energy production and conversion];
Pssm-ID: 440762 [Multi-domain] Cd Length: 563 Bit Score: 41.38 E-value: 1.03e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 754538199 213 AKAAGTTFVSGTVRNIERRGDGTAVVLLED---GR--RIEADSVVLAAGV 257
Cdd:COG1148 360 AREDGVRFIRGRVAEIEEDEGGKLVVTVEDtllGEpvEIEADLVVLATGM 409
|
|
| PanE |
COG1893 |
Ketopantoate reductase [Coenzyme transport and metabolism]; Ketopantoate reductase is part of ... |
9-39 |
1.35e-03 |
|
Ketopantoate reductase [Coenzyme transport and metabolism]; Ketopantoate reductase is part of the Pathway/BioSystem: Pantothenate/CoA biosynthesis
Pssm-ID: 441497 [Multi-domain] Cd Length: 305 Bit Score: 40.23 E-value: 1.35e-03
10 20 30
....*....|....*....|....*....|.
gi 754538199 9 VAVVGAGVIGASIAFELQRRGFEVTLIDKGE 39
Cdd:COG1893 3 IAILGAGAIGGLLGARLARAGHDVTLVARGA 33
|
|
| UbiH |
COG0654 |
2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme ... |
5-47 |
2.00e-03 |
|
2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme transport and metabolism, Energy production and conversion]; 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases is part of the Pathway/BioSystem: Ubiquinone biosynthesis
Pssm-ID: 440419 [Multi-domain] Cd Length: 326 Bit Score: 39.92 E-value: 2.00e-03
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 754538199 5 TKKSVAVVGAGVIGASIAFELQRRGFEVTLIDKGEPGRGTSFG 47
Cdd:COG0654 2 MRTDVLIVGGGPAGLALALALARAGIRVTVVERAPPPRPDGRG 44
|
|
| YdhS |
COG4529 |
Uncharacterized NAD(P)/FAD-binding protein YdhS [General function prediction only]; |
7-47 |
2.11e-03 |
|
Uncharacterized NAD(P)/FAD-binding protein YdhS [General function prediction only];
Pssm-ID: 443597 [Multi-domain] Cd Length: 466 Bit Score: 40.32 E-value: 2.11e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 754538199 7 KSVAVVGAGVIGASIAFELQRR---GFEVTLIDK-GEPGRGTSFG 47
Cdd:COG4529 6 KRIAIIGGGASGTALAIHLLRRapePLRITLFEPrPELGRGVAYS 50
|
|
| PRK07233 |
PRK07233 |
hypothetical protein; Provisional |
9-51 |
2.34e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 235977 [Multi-domain] Cd Length: 434 Bit Score: 39.87 E-value: 2.34e-03
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 754538199 9 VAVVGAGVIGASIAFELQRRGFEVTLIDKGEpgrgtSFGNMAS 51
Cdd:PRK07233 2 IAIVGGGIAGLAAAYRLAKRGHEVTVFEADD-----QLGGLAA 39
|
|
| HdrA |
COG1148 |
Heterodisulfide reductase, subunit A (polyferredoxin) [Energy production and conversion]; |
4-52 |
2.74e-03 |
|
Heterodisulfide reductase, subunit A (polyferredoxin) [Energy production and conversion];
Pssm-ID: 440762 [Multi-domain] Cd Length: 563 Bit Score: 39.84 E-value: 2.74e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 754538199 4 ETKKSVAVVGAGVIGASIAFELQRRGFEVTLIDKgEPGRGtsfGNMASI 52
Cdd:COG1148 138 PVNKRALVIGGGIAGMTAALELAEQGYEVYLVEK-EPELG---GRAAQL 182
|
|
| PRK12814 |
PRK12814 |
putative NADPH-dependent glutamate synthase small subunit; Provisional |
1-41 |
2.83e-03 |
|
putative NADPH-dependent glutamate synthase small subunit; Provisional
Pssm-ID: 139246 [Multi-domain] Cd Length: 652 Bit Score: 40.10 E-value: 2.83e-03
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 754538199 1 MADETKKSVAVVGAGVIGASIAFELQRRGFEVTLIDKGE-PG 41
Cdd:PRK12814 188 RAPKSGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEqAG 229
|
|
| PRK06292 |
PRK06292 |
dihydrolipoamide dehydrogenase; Validated |
7-39 |
2.90e-03 |
|
dihydrolipoamide dehydrogenase; Validated
Pssm-ID: 235774 [Multi-domain] Cd Length: 460 Bit Score: 39.78 E-value: 2.90e-03
10 20 30
....*....|....*....|....*....|...
gi 754538199 7 KSVAVVGAGVIGASIAFELQRRGFEVTLIDKGE 39
Cdd:PRK06292 170 KSLAVIGGGVIGLELGQALSRLGVKVTVFERGD 202
|
|
| PRK07588 |
PRK07588 |
FAD-binding domain; |
7-37 |
2.92e-03 |
|
FAD-binding domain;
Pssm-ID: 169028 [Multi-domain] Cd Length: 391 Bit Score: 39.72 E-value: 2.92e-03
10 20 30
....*....|....*....|....*....|.
gi 754538199 7 KSVAVVGAGVIGASIAFELQRRGFEVTLIDK 37
Cdd:PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIER 31
|
|
| NirB |
COG1251 |
NAD(P)H-nitrite reductase, large subunit [Energy production and conversion]; |
4-36 |
3.29e-03 |
|
NAD(P)H-nitrite reductase, large subunit [Energy production and conversion];
Pssm-ID: 440863 [Multi-domain] Cd Length: 402 Bit Score: 39.35 E-value: 3.29e-03
10 20 30
....*....|....*....|....*....|...
gi 754538199 4 ETKKSVAVVGAGVIGASIAFELQRRGFEVTLID 36
Cdd:COG1251 140 APGKRVVVIGGGLIGLEAAAALRKRGLEVTVVE 172
|
|
| ApbA |
pfam02558 |
Ketopantoate reductase PanE/ApbA; This is a family of 2-dehydropantoate 2-reductases also ... |
9-39 |
3.55e-03 |
|
Ketopantoate reductase PanE/ApbA; This is a family of 2-dehydropantoate 2-reductases also known as ketopantoate reductases, EC:1.1.1.169. The reaction catalyzed by this enzyme is: (R)-pantoate + NADP(+) <=> 2-dehydropantoate + NADPH. AbpA catalyzes the NADPH reduction of ketopantoic acid to pantoic acid in the alternative pyrimidine biosynthetic (APB) pathway. ApbA and PanE are allelic. ApbA, the ketopantoate reductase enzyme is required for the synthesis of thiamine via the APB biosynthetic pathway.
Pssm-ID: 426831 [Multi-domain] Cd Length: 147 Bit Score: 37.60 E-value: 3.55e-03
10 20 30
....*....|....*....|....*....|.
gi 754538199 9 VAVVGAGVIGASIAFELQRRGFEVTLIDKGE 39
Cdd:pfam02558 1 IAILGAGAIGSLLGARLAKAGHDVTLILRGA 31
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| PRK08293 |
PRK08293 |
3-hydroxyacyl-CoA dehydrogenase; |
7-40 |
3.94e-03 |
|
3-hydroxyacyl-CoA dehydrogenase;
Pssm-ID: 181359 [Multi-domain] Cd Length: 287 Bit Score: 38.77 E-value: 3.94e-03
10 20 30
....*....|....*....|....*....|....
gi 754538199 7 KSVAVVGAGVIGASIAFELQRRGFEVTLIDKGEP 40
Cdd:PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDE 37
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| PRK06130 |
PRK06130 |
3-hydroxybutyryl-CoA dehydrogenase; Validated |
7-61 |
4.17e-03 |
|
3-hydroxybutyryl-CoA dehydrogenase; Validated
Pssm-ID: 235707 [Multi-domain] Cd Length: 311 Bit Score: 38.99 E-value: 4.17e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 754538199 7 KSVAVVGAGVIGASIAFELQRRGFEVTLIDKGEPGRGTSFGnMASIALDFAAGSG 61
Cdd:PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARG-VIERALGVYAPLG 58
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|
| PRK12921 |
PRK12921 |
oxidoreductase; |
8-39 |
5.29e-03 |
|
oxidoreductase;
Pssm-ID: 183829 [Multi-domain] Cd Length: 305 Bit Score: 38.69 E-value: 5.29e-03
10 20 30
....*....|....*....|....*....|..
gi 754538199 8 SVAVVGAGVIGASIAFELQRRGFEVTLIDKGE 39
Cdd:PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVRPK 33
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| Pyr_redox |
pfam00070 |
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II ... |
8-36 |
6.37e-03 |
|
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.
Pssm-ID: 425450 [Multi-domain] Cd Length: 80 Bit Score: 35.64 E-value: 6.37e-03
10 20
....*....|....*....|....*....
gi 754538199 8 SVAVVGAGVIGASIAFELQRRGFEVTLID 36
Cdd:pfam00070 1 RVVVVGGGYIGLELAGALARLGSKVTVVE 29
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|
| ubiF |
PRK08020 |
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed |
9-40 |
7.08e-03 |
|
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Pssm-ID: 181199 [Multi-domain] Cd Length: 391 Bit Score: 38.43 E-value: 7.08e-03
10 20 30
....*....|....*....|....*....|..
gi 754538199 9 VAVVGAGVIGASIAFELQRRGFEVTLIDKGEP 40
Cdd:PRK08020 8 IAIVGGGMVGAALALGLAQHGFSVAVLEHAAP 39
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|
| PRK06129 |
PRK06129 |
3-hydroxyacyl-CoA dehydrogenase; Validated |
8-58 |
7.17e-03 |
|
3-hydroxyacyl-CoA dehydrogenase; Validated
Pssm-ID: 235706 [Multi-domain] Cd Length: 308 Bit Score: 38.10 E-value: 7.17e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 754538199 8 SVAVVGAGVIGASIAFELQRRGFEVTLIDKGEPGRGTSFGNMASIALDFAA 58
Cdd:PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAA 54
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|
| PRK08773 |
PRK08773 |
UbiH/UbiF family hydroxylase; |
1-42 |
8.68e-03 |
|
UbiH/UbiF family hydroxylase;
Pssm-ID: 181552 [Multi-domain] Cd Length: 392 Bit Score: 38.30 E-value: 8.68e-03
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 754538199 1 MADETKKSVAVVGAGVIGASIAFELQRRGFEVTLIDKGEPGR 42
Cdd:PRK08773 1 MSRRSRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPR 42
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|
| Trp_halogenase |
pfam04820 |
Tryptophan halogenase; Tryptophan halogenase catalyzes the chlorination of tryptophan to form ... |
209-269 |
8.73e-03 |
|
Tryptophan halogenase; Tryptophan halogenase catalyzes the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent.
Pssm-ID: 398475 [Multi-domain] Cd Length: 457 Bit Score: 38.08 E-value: 8.73e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 754538199 209 LTDAAKAAGTTFVSGTVRNIERRGDG-TAVVLLEDGRRIEADSVVLAAGVHTRFLAEKLGEP 269
Cdd:pfam04820 163 LRRNAEARGVTRVEGKVVDVQLDADGfVTSLRLEDGREVEADLFIDCSGFRGLLIEQALKTG 224
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