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Conserved domains on  [gi|748801174|ref|WP_040048535|]
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5-oxoprolinase subunit PxpB [Caballeronia concitans]

Protein Classification

allophanate hydrolase subunit 1( domain architecture ID 10005226)

allophanate hydrolase subunit 1 (AHS1) converts allophanate to ammonium and carbon dioxide, and is essential for utilization of urea as a nitrogen source in bacteria

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PxpB COG2049
5-oxoprolinase subunit B/Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]; ...
1-212 7.87e-105

5-oxoprolinase subunit B/Allophanate hydrolase subunit 1 [Amino acid transport and metabolism];


:

Pssm-ID: 441652  Cd Length: 229  Bit Score: 301.67  E-value: 7.87e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748801174   1 MTTPRIHPLGDCALVCDVAPPATIECQRRIWALAEH--ARLMPQVVEVVPGMNNLTIVFDPLEADYEALAAQLEAAWNAV 78
Cdd:COG2049    2 RMAMRILPAGDRALLVEFGDEIDLELNRRVLALAAAlrAAPLPGVVEVVPAYRSLLVHFDPLVIDPAALAARLRALLAEL 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748801174  79 AGADE-PGAEIEIPVRYGGEDGPDLAELAKHAGLSVDEVVKRHTAAEYIVFFLGFQPGFAYLGGLDPALHMPRRREPRLE 157
Cdd:COG2049   82 DAAAEvPSRLVEIPVCYDGEFGPDLEEVARHNGLSVEEVIALHTAAEYRVYMLGFAPGFPYLGGLDPRLATPRRATPRTR 161
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 748801174 158 VPAGSVGIGGAQTGIYPAASPGGWQLLGRTELKLFDPSRNPPTLMQPGDRVRFTA 212
Cdd:COG2049  162 VPAGSVGIAGAQTGIYPLESPGGWQLIGRTPLPLFDPDREPPALLRPGDRVRFVP 216
 
Name Accession Description Interval E-value
PxpB COG2049
5-oxoprolinase subunit B/Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]; ...
1-212 7.87e-105

5-oxoprolinase subunit B/Allophanate hydrolase subunit 1 [Amino acid transport and metabolism];


Pssm-ID: 441652  Cd Length: 229  Bit Score: 301.67  E-value: 7.87e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748801174   1 MTTPRIHPLGDCALVCDVAPPATIECQRRIWALAEH--ARLMPQVVEVVPGMNNLTIVFDPLEADYEALAAQLEAAWNAV 78
Cdd:COG2049    2 RMAMRILPAGDRALLVEFGDEIDLELNRRVLALAAAlrAAPLPGVVEVVPAYRSLLVHFDPLVIDPAALAARLRALLAEL 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748801174  79 AGADE-PGAEIEIPVRYGGEDGPDLAELAKHAGLSVDEVVKRHTAAEYIVFFLGFQPGFAYLGGLDPALHMPRRREPRLE 157
Cdd:COG2049   82 DAAAEvPSRLVEIPVCYDGEFGPDLEEVARHNGLSVEEVIALHTAAEYRVYMLGFAPGFPYLGGLDPRLATPRRATPRTR 161
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 748801174 158 VPAGSVGIGGAQTGIYPAASPGGWQLLGRTELKLFDPSRNPPTLMQPGDRVRFTA 212
Cdd:COG2049  162 VPAGSVGIAGAQTGIYPLESPGGWQLIGRTPLPLFDPDREPPALLRPGDRVRFVP 216
CT_C_D pfam02682
Carboxyltransferase domain, subdomain C and D; Urea carboxylase (UC) catalyzes a two-step, ...
5-202 8.91e-98

Carboxyltransferase domain, subdomain C and D; Urea carboxylase (UC) catalyzes a two-step, ATP- and biotin-dependent carboxylation reaction of urea. It is composed of biotin carboxylase (BC), carboxyltransferase (CT), and biotin carboxyl carrier protein (BCCP) domains. The CT domain of UC consists of four subdomains, named A, B, C and D. This domain covers the C and D subdomains of the CT domain. This domain covers the whole length of kipI (kinase A inhibitor) from Bacillus subtilis. It can also be found in S. cerevisiae urea amidolyase Dur1,2, which is a multifunctional biotin-dependent enzyme with domains for urea carboxylase and allophanate (urea carboxylate) hydrolase activity.


Pssm-ID: 426925  Cd Length: 201  Bit Score: 282.52  E-value: 8.91e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748801174    5 RIHPLGDCALVCDVAPPATIECQRRIWALAEH--ARLMPQVVEVVPGMNNLTIVFDPLEADYEALAAQLEAAWNAVAGAD 82
Cdd:pfam02682   1 RIRPAGDRALLVEFGDEIDLALNRRVLALAAAlrAAPLPGVVEVVPGYRSLLVHYDPLVTDLAALEARLRALLAALEAAA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748801174   83 EPGAE-IEIPVRYGGEDGPDLAELAKHAGLSVDEVVKRHTAAEYIVFFLGFQPGFAYLGGLDPALHMPRRREPRLEVPAG 161
Cdd:pfam02682  81 APGGRlIEIPVCYDGEFGPDLAEVAAHNGLSVEEVIRLHSAAEYRVYFLGFAPGFPYLGGLDPRLAVPRRATPRTRVPAG 160
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 748801174  162 SVGIGGAQTGIYPAASPGGWQLLGRTELKLFDPSRNPPTLM 202
Cdd:pfam02682 161 SVGIAGRQTGIYPLESPGGWQLIGRTPLPLFDPDRDPPALL 201
AHS1 smart00796
Allophanate hydrolase subunit 1; This domain represents subunit 1 of allophanate hydrolase ...
4-200 1.04e-97

Allophanate hydrolase subunit 1; This domain represents subunit 1 of allophanate hydrolase (AHS1).


Pssm-ID: 214820  Cd Length: 201  Bit Score: 282.49  E-value: 1.04e-97
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748801174     4 PRIHPLGDCALVCDVAPPATIECQRRIWALAEH--ARLMPQVVEVVPGMNNLTIVFDPLEADYEALAAQLEAAWN--AVA 79
Cdd:smart00796   1 MRIRPAGDRALLVEFGDEIDLALNRRVLALARAlrAAPLPGVVELVPGYRSLLVHFDPLVIDPAALLARLRALEAlpLAE 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748801174    80 GADEPGAEIEIPVRYGGEDGPDLAELAKHAGLSVDEVVKRHTAAEYIVFFLGFQPGFAYLGGLDPALHMPRRREPRLEVP 159
Cdd:smart00796  81 ALEVPGRIIEIPVCYGGEFGPDLEFVARHNGLSVDEVIRLHSAAEYRVYMLGFAPGFPYLGGLDPRLATPRRSTPRTRVP 160
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|.
gi 748801174   160 AGSVGIGGAQTGIYPAASPGGWQLLGRTELKLFDPSRNPPT 200
Cdd:smart00796 161 AGSVGIAGAQTGIYPLESPGGWQLIGRTPLPLFDPDREPPA 201
TIGR00370 TIGR00370
sensor histidine kinase inhibitor, KipI family; [Hypothetical proteins, Conserved]
9-210 5.93e-83

sensor histidine kinase inhibitor, KipI family; [Hypothetical proteins, Conserved]


Pssm-ID: 129467  Cd Length: 202  Bit Score: 245.15  E-value: 5.93e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748801174    9 LGDCALVCDVAPPATIECQRRIWALAEHARLMPQVVEVVPGMNNLTIVFDPlEADYEALAAQLEAAWNAVAGADEPGAEI 88
Cdd:TIGR00370   1 IGESAVVIRLGPPINEQVQGIVWAAAAYLEEQPGFVECIPGMNNLTVFYDM-YEVYKHLPQRLSSPWEEVKDYEVNRRII 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748801174   89 EIPVRYGGEDGPDLAELAKHAGLSVDEVVKRHTAAEYIVFFLGFQPGFAYLGGLDPALHMPRRREPRLEVPAGSVGIGGA 168
Cdd:TIGR00370  80 EIPVCYGGEFGPDLEEVAKINQLSPEEVIDIHSNGEYVVYMLGFQPGFPYLGGLPERLHTPRRASPRPSVPAGSVGIGGL 159
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 748801174  169 QTGIYPAASPGGWQLLGRTELKLFDPSRNPPTLMQPGDRVRF 210
Cdd:TIGR00370 160 QTGVYPISTPGGWQLIGKTPLALFDPQENPPTLLRAGDIVKF 201
 
Name Accession Description Interval E-value
PxpB COG2049
5-oxoprolinase subunit B/Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]; ...
1-212 7.87e-105

5-oxoprolinase subunit B/Allophanate hydrolase subunit 1 [Amino acid transport and metabolism];


Pssm-ID: 441652  Cd Length: 229  Bit Score: 301.67  E-value: 7.87e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748801174   1 MTTPRIHPLGDCALVCDVAPPATIECQRRIWALAEH--ARLMPQVVEVVPGMNNLTIVFDPLEADYEALAAQLEAAWNAV 78
Cdd:COG2049    2 RMAMRILPAGDRALLVEFGDEIDLELNRRVLALAAAlrAAPLPGVVEVVPAYRSLLVHFDPLVIDPAALAARLRALLAEL 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748801174  79 AGADE-PGAEIEIPVRYGGEDGPDLAELAKHAGLSVDEVVKRHTAAEYIVFFLGFQPGFAYLGGLDPALHMPRRREPRLE 157
Cdd:COG2049   82 DAAAEvPSRLVEIPVCYDGEFGPDLEEVARHNGLSVEEVIALHTAAEYRVYMLGFAPGFPYLGGLDPRLATPRRATPRTR 161
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 748801174 158 VPAGSVGIGGAQTGIYPAASPGGWQLLGRTELKLFDPSRNPPTLMQPGDRVRFTA 212
Cdd:COG2049  162 VPAGSVGIAGAQTGIYPLESPGGWQLIGRTPLPLFDPDREPPALLRPGDRVRFVP 216
CT_C_D pfam02682
Carboxyltransferase domain, subdomain C and D; Urea carboxylase (UC) catalyzes a two-step, ...
5-202 8.91e-98

Carboxyltransferase domain, subdomain C and D; Urea carboxylase (UC) catalyzes a two-step, ATP- and biotin-dependent carboxylation reaction of urea. It is composed of biotin carboxylase (BC), carboxyltransferase (CT), and biotin carboxyl carrier protein (BCCP) domains. The CT domain of UC consists of four subdomains, named A, B, C and D. This domain covers the C and D subdomains of the CT domain. This domain covers the whole length of kipI (kinase A inhibitor) from Bacillus subtilis. It can also be found in S. cerevisiae urea amidolyase Dur1,2, which is a multifunctional biotin-dependent enzyme with domains for urea carboxylase and allophanate (urea carboxylate) hydrolase activity.


Pssm-ID: 426925  Cd Length: 201  Bit Score: 282.52  E-value: 8.91e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748801174    5 RIHPLGDCALVCDVAPPATIECQRRIWALAEH--ARLMPQVVEVVPGMNNLTIVFDPLEADYEALAAQLEAAWNAVAGAD 82
Cdd:pfam02682   1 RIRPAGDRALLVEFGDEIDLALNRRVLALAAAlrAAPLPGVVEVVPGYRSLLVHYDPLVTDLAALEARLRALLAALEAAA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748801174   83 EPGAE-IEIPVRYGGEDGPDLAELAKHAGLSVDEVVKRHTAAEYIVFFLGFQPGFAYLGGLDPALHMPRRREPRLEVPAG 161
Cdd:pfam02682  81 APGGRlIEIPVCYDGEFGPDLAEVAAHNGLSVEEVIRLHSAAEYRVYFLGFAPGFPYLGGLDPRLAVPRRATPRTRVPAG 160
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 748801174  162 SVGIGGAQTGIYPAASPGGWQLLGRTELKLFDPSRNPPTLM 202
Cdd:pfam02682 161 SVGIAGRQTGIYPLESPGGWQLIGRTPLPLFDPDRDPPALL 201
AHS1 smart00796
Allophanate hydrolase subunit 1; This domain represents subunit 1 of allophanate hydrolase ...
4-200 1.04e-97

Allophanate hydrolase subunit 1; This domain represents subunit 1 of allophanate hydrolase (AHS1).


Pssm-ID: 214820  Cd Length: 201  Bit Score: 282.49  E-value: 1.04e-97
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748801174     4 PRIHPLGDCALVCDVAPPATIECQRRIWALAEH--ARLMPQVVEVVPGMNNLTIVFDPLEADYEALAAQLEAAWN--AVA 79
Cdd:smart00796   1 MRIRPAGDRALLVEFGDEIDLALNRRVLALARAlrAAPLPGVVELVPGYRSLLVHFDPLVIDPAALLARLRALEAlpLAE 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748801174    80 GADEPGAEIEIPVRYGGEDGPDLAELAKHAGLSVDEVVKRHTAAEYIVFFLGFQPGFAYLGGLDPALHMPRRREPRLEVP 159
Cdd:smart00796  81 ALEVPGRIIEIPVCYGGEFGPDLEFVARHNGLSVDEVIRLHSAAEYRVYMLGFAPGFPYLGGLDPRLATPRRSTPRTRVP 160
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|.
gi 748801174   160 AGSVGIGGAQTGIYPAASPGGWQLLGRTELKLFDPSRNPPT 200
Cdd:smart00796 161 AGSVGIAGAQTGIYPLESPGGWQLIGRTPLPLFDPDREPPA 201
TIGR00370 TIGR00370
sensor histidine kinase inhibitor, KipI family; [Hypothetical proteins, Conserved]
9-210 5.93e-83

sensor histidine kinase inhibitor, KipI family; [Hypothetical proteins, Conserved]


Pssm-ID: 129467  Cd Length: 202  Bit Score: 245.15  E-value: 5.93e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748801174    9 LGDCALVCDVAPPATIECQRRIWALAEHARLMPQVVEVVPGMNNLTIVFDPlEADYEALAAQLEAAWNAVAGADEPGAEI 88
Cdd:TIGR00370   1 IGESAVVIRLGPPINEQVQGIVWAAAAYLEEQPGFVECIPGMNNLTVFYDM-YEVYKHLPQRLSSPWEEVKDYEVNRRII 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748801174   89 EIPVRYGGEDGPDLAELAKHAGLSVDEVVKRHTAAEYIVFFLGFQPGFAYLGGLDPALHMPRRREPRLEVPAGSVGIGGA 168
Cdd:TIGR00370  80 EIPVCYGGEFGPDLEEVAKINQLSPEEVIDIHSNGEYVVYMLGFQPGFPYLGGLPERLHTPRRASPRPSVPAGSVGIGGL 159
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 748801174  169 QTGIYPAASPGGWQLLGRTELKLFDPSRNPPTLMQPGDRVRF 210
Cdd:TIGR00370 160 QTGVYPISTPGGWQLIGKTPLALFDPQENPPTLLRAGDIVKF 201
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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