|
Name |
Accession |
Description |
Interval |
E-value |
| PRK11007 |
PRK11007 |
PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional |
1-472 |
0e+00 |
|
PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional
Pssm-ID: 182896 Cd Length: 473 Bit Score: 1001.90 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695827872 1 MSKVNQQDIDKLIELVGGRGNIATVSHCITRLRFVLNDPAIAKPKEIEQLRMVKGCFTNAGQFQVVIGTEVGDYYKALLA 80
Cdd:PRK11007 2 MSKINQQDIDRLIELVGGRENIATVSHCITRLRFVLNDPANADPKEIEQLPMVKGCFTNAGQFQVVIGTEVGDYYKALIA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695827872 81 TTGQTSANKEQVKQAARQNMKWHEQLISHFAEIFFPLLPALISGGLILGFRNVIGDLPMSNGQTLAQMHPSLKTIYDFLW 160
Cdd:PRK11007 82 TTGQAEVDKEQAKKAARQNMKWHERLISHFAEIFFPLLPALISGGLILGFRNVIGDIPMSDGQTLAQMYPFWQTIYDFLW 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695827872 161 LIGEAIFFYLPVGICWSAVKKMGGTPILGIVLGVTLVSPQLMNAYLLGQQVPEVWNFGLFTIAKVGYQAQVIPALLAGLT 240
Cdd:PRK11007 162 LIGEAIFFYLPVGICWSAVKKMGGTPILGIVLGVTLVSPQLMNAYLLGQQLPEVWDFGLFSIEKVGYQAQVIPALLAGLA 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695827872 241 LGFIETRLKRIVPDYLYLVIVPVCSLILAVFLAHAIIGPFGRLIGDGVAFAVRHLLTGSFAPIGAALFGFLYAPLVITGV 320
Cdd:PRK11007 242 LGFIETRLKRIVPDYLYLVVVPVCSLILAVFLAHALIGPFGRMIGDGVAFAVKALMTGSFAPIGAALFGFLYAPLVITGV 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695827872 321 HQTTLAIDMQMIQSMGGTPVWPLIALSNIAQASAVVGIIIASRKQNEREISVPAAISAYLGVTEPAMYGINLKYRFPMLC 400
Cdd:PRK11007 322 HQTTLAIDLQMIQSMGGTPVWPLIALSNIAQASAVVGIIIISRKHNEREISVPAAISAYLGVTEPAMYGINLKYRFPMLC 401
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 695827872 401 AMIGSGLAGLLCGLNGVLANGIGVGGLPGILSIQPTYWQVYAMAMAIAVVVPIILTTVVYQRKYRQGTLQIV 472
Cdd:PRK11007 402 AMIGSALAGLICGLNGVMANGIGVGGLPGILSIQPQYWQVYALAMLVAIVVPIVLTSFIYKRKERLGTLDIV 473
|
|
| PTS-IIBC-Tre |
TIGR01992 |
PTS system, trehalose-specific IIBC component; This model represents the fused enzyme II B and ... |
6-461 |
0e+00 |
|
PTS system, trehalose-specific IIBC component; This model represents the fused enzyme II B and C components of the trehalose-specific PTS sugar transporter system. Trehalose is converted to trehalose-6-phosphate in the process of translocation into the cell. These transporters lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). The exceptions to this rule are Staphylococci and Streptococci which contain their own A domain as a C-terminal fusion. This family is closely related to the sucrose transporting PTS IIBC enzymes and the B and C domains of each are described by subfamily-domain level TIGRFAMs models (TIGR00826 and TIGR00852, respectively). In E. coli, B. subtilis and P. fluorescens the presence of this gene is associated with the presence of trehalase which degrades T6P to glucose and glucose-6-P. Trehalose may also be transported (in Salmonella) via the mannose PTS or galactose permease systems, or (in Sinorhizobium, Thermococcus and Sulfolobus, for instance) by ABC transporters.
Pssm-ID: 273916 Cd Length: 462 Bit Score: 684.92 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695827872 6 QQDIDKLIELVGGRGNIATVSHCITRLRFVLNDPAIAKPKEIEQLRMVKGCFTNAGQFQVVIG-TEVGDYYKALLATTGQ 84
Cdd:TIGR01992 1 RKDAKAILEAIGGKENIEAATHCVTRLRFVLKDPSKVDVKALEQIDLVKGSFTNAGQFQVVIGpGTVDKVYAALIAETGI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695827872 85 TSANKEQVKQAARQNMKWHEQLISHFAEIFFPLLPALISGGLILGFRNVIGDLPMSN-GQTLAQMHPSLKTIYDFLWLIG 163
Cdd:TIGR01992 81 AEVSKEEVKKAAAKNMNPLQRLIKLLADIFIPILPAIITAGLLMGINNLLGAKGMSFgGQTLVEVYPQWAGIYNFINLIA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695827872 164 EAIFFYLPVGICWSAVKKMGGTPILGIVLGVTLVSPQLMNAYLLGQQVPE----VWN-FGLFTIAKVGYQAQVIPALLAG 238
Cdd:TIGR01992 161 ETAFHFLPALIGWSAVKKFGGSPILGIVLGLMLVHPQLLNAYLYGQALAEgnipVWDlFGFFEIQKVGYQGQVLPALLAG 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695827872 239 LTLGFIETRLKRIVPDYLYLVIVPVCSLILAVFLAHAIIGPFGRLIGDGVAFAVRHLLTgSFAPIGAALFGFLYAPLVIT 318
Cdd:TIGR01992 241 YVLAVIEKWLRKRVPDAIQLLVVPPVSLLVTGFLAHAIIGPIGRLIGNGITSGVTALFT-SAAWLGGAIFGLLYAPLVIT 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695827872 319 GVHQTTLAIDMQMIQSMGGTPVWPLIALSNIAQASAVVGIIIASRKQNEREISVPAAISAYLGVTEPAMYGINLKYRFPM 398
Cdd:TIGR01992 320 GLHHMFLAVDLQLIGSLGGTFLWPMIALSNIAQGSAALGIIFMSRNEKEKGLSLTSAISAYLGVTEPAMFGVNLKYKFPF 399
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 695827872 399 LCAMIGSGLAGLLCGLNGVLANGIGVGGLPGILSIQPTYWQVYAMAMAIAVVVPIILTTVVYQ 461
Cdd:TIGR01992 400 IAAMIGSGLAGLLSGLNGVLANSIGVGGLPGFISIQPQYWPVFAIGMAIAIVVPFVLTIFFSK 462
|
|
| PtsG1 |
COG1263 |
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific ... |
96-459 |
1.39e-98 |
|
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific [Carbohydrate transport and metabolism];
Pssm-ID: 440875 [Multi-domain] Cd Length: 463 Bit Score: 303.79 E-value: 1.39e-98
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695827872 96 ARQNMKWHEQLISHFAEIFFPLLPALISGGLILGFRNVIGDLPMSNGqtlaqmHPSLKTIYDFLWLIGEAIFFYLPVGIC 175
Cdd:COG1263 1 AKKKKNPLFRFLQKIGGIFMPPIPVLPAAGLLLGLGALLTNPGLLGE------GSFLSGTYQILNAAGDAVFYFLPLLFA 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695827872 176 WSAVKKMGGTPILGIVLGVTLVSPQLMNAYLLGqqvPEVWNFGLFTiAKVGYQAQVIPALLAGLTLGFIETRLKRIVPDY 255
Cdd:COG1263 75 IGAAKGFGGNPALAAVIGYLLVHPTLLNAYAVA---GGYISFLGIP-TLIGYQGGVFPGILAGWLAAYLEKFLKKKLPDA 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695827872 256 LYLVIVPVCSLILAVFLAHAIIGPFGRLIGDGVAFAVrHLLTGSFAPIGAALFGFLYAPLVITGVHQTTLAIDMQMIQSM 335
Cdd:COG1263 151 LGFFFVPILTLLIMVPLALLVIGPIWPPIGNGIAAGL-GWIYGLAGAIGGFIYGFLYRLLVPTGLHHGLNPIFWFLLGGT 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695827872 336 GGTPVWPLIALSNIAQASAVVGIIIASR-KQNEREISVPAAISAYL-GVTEPAMYGINLKYRFPMLCAMIGSGLAGLLCG 413
Cdd:COG1263 230 GDDGLFPILAAAMFGQPGAALAVYLKAKpNKKVKGLAISAALTAFLtGITEPAEFGFNLVAPKLFIAHAIGGGLGGAIAG 309
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 695827872 414 LNGVLANGIGVGGLPGILSIQP---TYWQVYAMAMAIAVVVPIILTTVV 459
Cdd:COG1263 310 LLGVKAFSFGVGGLIDFPSILNpgaTNLLLYLIGLVIAFVYYFVFTFLI 358
|
|
| PTS_IIB_glc |
cd00212 |
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: ... |
6-83 |
1.90e-26 |
|
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation
Pssm-ID: 238130 [Multi-domain] Cd Length: 78 Bit Score: 101.84 E-value: 1.90e-26
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 695827872 6 QQDIDKLIELVGGRGNIATVSHCITRLRFVLNDPAIAKPKEIEQLRMVKGCFTNAGQFQVVIGTEVGDYYKALLATTG 83
Cdd:cd00212 1 EQLAKDILEALGGKENIVSLDHCATRLRLTVKDESKVDEAALKKLGGVKGVVKNGGQYQVIIGPGVADVYKEAIKLLG 78
|
|
| PTS_EIIC |
pfam02378 |
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase ... |
112-406 |
6.21e-26 |
|
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The sugar-specific permease of the PTS consists of three domains (IIA, IIB and IIC). The IIC domain catalyzes the transfer of a phosphoryl group from IIB to the sugar substrate.
Pssm-ID: 367061 Cd Length: 315 Bit Score: 107.43 E-value: 6.21e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695827872 112 EIFFPLLPALISGGLILGfrnvIGDLPMSNGQTLAQMHPSLKTIYDFLWLIGEAIFFYLPVGICWSAVKKM-GGTPILGI 190
Cdd:pfam02378 2 DGFMPPIPLLIAGGILLG----LGNLPNDTTGLPAGGFTGDSPLAEILKQAGSAAFGILPILFAIGIAYGLaGGDGVAGA 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695827872 191 VLGVTLVSPQLMNAY---LLGQQVPEVWNFGLFTIAKVGYQAQVIPALLAGLTLGFIETRLKRIVPDYLYLVIVPVCSLI 267
Cdd:pfam02378 78 AGLIGLLSFNLAAAIsvaLTAAGLSGGGNILGIGLGATGVFGAIIPGLLAAYLYNRFEKNITIKLPDSLPFFVGKRFVPI 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695827872 268 LAVFLAHAIIGPFGRLIGDGVAFAVRH---LLTGSFAPIGAALFGFLYAPLVITGVHQTTLAIDMQMI-----QSMGGTP 339
Cdd:pfam02378 158 ITGFVTLLVIGPVLGLIWPAIQGGLNAlglLLIIAGGILGGLIFGFLERLLWPFGLHGAFIAIFWFLPiggsnPIANQQA 237
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 695827872 340 VWP----------LIALSNIAQASAVVGII-IASRKQNEREISVPAAISAYLGVTEPAMYGINLKYRFPMLCAMIGSG 406
Cdd:pfam02378 238 YGAgaahiltggfDVMFGGPGATLALYAAAfLFKKSKVKKLLGSAALTPFLFGITEPLEFGFPFVLNPPFFIPAILAG 315
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK11007 |
PRK11007 |
PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional |
1-472 |
0e+00 |
|
PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional
Pssm-ID: 182896 Cd Length: 473 Bit Score: 1001.90 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695827872 1 MSKVNQQDIDKLIELVGGRGNIATVSHCITRLRFVLNDPAIAKPKEIEQLRMVKGCFTNAGQFQVVIGTEVGDYYKALLA 80
Cdd:PRK11007 2 MSKINQQDIDRLIELVGGRENIATVSHCITRLRFVLNDPANADPKEIEQLPMVKGCFTNAGQFQVVIGTEVGDYYKALIA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695827872 81 TTGQTSANKEQVKQAARQNMKWHEQLISHFAEIFFPLLPALISGGLILGFRNVIGDLPMSNGQTLAQMHPSLKTIYDFLW 160
Cdd:PRK11007 82 TTGQAEVDKEQAKKAARQNMKWHERLISHFAEIFFPLLPALISGGLILGFRNVIGDIPMSDGQTLAQMYPFWQTIYDFLW 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695827872 161 LIGEAIFFYLPVGICWSAVKKMGGTPILGIVLGVTLVSPQLMNAYLLGQQVPEVWNFGLFTIAKVGYQAQVIPALLAGLT 240
Cdd:PRK11007 162 LIGEAIFFYLPVGICWSAVKKMGGTPILGIVLGVTLVSPQLMNAYLLGQQLPEVWDFGLFSIEKVGYQAQVIPALLAGLA 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695827872 241 LGFIETRLKRIVPDYLYLVIVPVCSLILAVFLAHAIIGPFGRLIGDGVAFAVRHLLTGSFAPIGAALFGFLYAPLVITGV 320
Cdd:PRK11007 242 LGFIETRLKRIVPDYLYLVVVPVCSLILAVFLAHALIGPFGRMIGDGVAFAVKALMTGSFAPIGAALFGFLYAPLVITGV 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695827872 321 HQTTLAIDMQMIQSMGGTPVWPLIALSNIAQASAVVGIIIASRKQNEREISVPAAISAYLGVTEPAMYGINLKYRFPMLC 400
Cdd:PRK11007 322 HQTTLAIDLQMIQSMGGTPVWPLIALSNIAQASAVVGIIIISRKHNEREISVPAAISAYLGVTEPAMYGINLKYRFPMLC 401
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 695827872 401 AMIGSGLAGLLCGLNGVLANGIGVGGLPGILSIQPTYWQVYAMAMAIAVVVPIILTTVVYQRKYRQGTLQIV 472
Cdd:PRK11007 402 AMIGSALAGLICGLNGVMANGIGVGGLPGILSIQPQYWQVYALAMLVAIVVPIVLTSFIYKRKERLGTLDIV 473
|
|
| PTS-IIBC-Tre |
TIGR01992 |
PTS system, trehalose-specific IIBC component; This model represents the fused enzyme II B and ... |
6-461 |
0e+00 |
|
PTS system, trehalose-specific IIBC component; This model represents the fused enzyme II B and C components of the trehalose-specific PTS sugar transporter system. Trehalose is converted to trehalose-6-phosphate in the process of translocation into the cell. These transporters lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). The exceptions to this rule are Staphylococci and Streptococci which contain their own A domain as a C-terminal fusion. This family is closely related to the sucrose transporting PTS IIBC enzymes and the B and C domains of each are described by subfamily-domain level TIGRFAMs models (TIGR00826 and TIGR00852, respectively). In E. coli, B. subtilis and P. fluorescens the presence of this gene is associated with the presence of trehalase which degrades T6P to glucose and glucose-6-P. Trehalose may also be transported (in Salmonella) via the mannose PTS or galactose permease systems, or (in Sinorhizobium, Thermococcus and Sulfolobus, for instance) by ABC transporters.
Pssm-ID: 273916 Cd Length: 462 Bit Score: 684.92 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695827872 6 QQDIDKLIELVGGRGNIATVSHCITRLRFVLNDPAIAKPKEIEQLRMVKGCFTNAGQFQVVIG-TEVGDYYKALLATTGQ 84
Cdd:TIGR01992 1 RKDAKAILEAIGGKENIEAATHCVTRLRFVLKDPSKVDVKALEQIDLVKGSFTNAGQFQVVIGpGTVDKVYAALIAETGI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695827872 85 TSANKEQVKQAARQNMKWHEQLISHFAEIFFPLLPALISGGLILGFRNVIGDLPMSN-GQTLAQMHPSLKTIYDFLWLIG 163
Cdd:TIGR01992 81 AEVSKEEVKKAAAKNMNPLQRLIKLLADIFIPILPAIITAGLLMGINNLLGAKGMSFgGQTLVEVYPQWAGIYNFINLIA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695827872 164 EAIFFYLPVGICWSAVKKMGGTPILGIVLGVTLVSPQLMNAYLLGQQVPE----VWN-FGLFTIAKVGYQAQVIPALLAG 238
Cdd:TIGR01992 161 ETAFHFLPALIGWSAVKKFGGSPILGIVLGLMLVHPQLLNAYLYGQALAEgnipVWDlFGFFEIQKVGYQGQVLPALLAG 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695827872 239 LTLGFIETRLKRIVPDYLYLVIVPVCSLILAVFLAHAIIGPFGRLIGDGVAFAVRHLLTgSFAPIGAALFGFLYAPLVIT 318
Cdd:TIGR01992 241 YVLAVIEKWLRKRVPDAIQLLVVPPVSLLVTGFLAHAIIGPIGRLIGNGITSGVTALFT-SAAWLGGAIFGLLYAPLVIT 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695827872 319 GVHQTTLAIDMQMIQSMGGTPVWPLIALSNIAQASAVVGIIIASRKQNEREISVPAAISAYLGVTEPAMYGINLKYRFPM 398
Cdd:TIGR01992 320 GLHHMFLAVDLQLIGSLGGTFLWPMIALSNIAQGSAALGIIFMSRNEKEKGLSLTSAISAYLGVTEPAMFGVNLKYKFPF 399
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 695827872 399 LCAMIGSGLAGLLCGLNGVLANGIGVGGLPGILSIQPTYWQVYAMAMAIAVVVPIILTTVVYQ 461
Cdd:TIGR01992 400 IAAMIGSGLAGLLSGLNGVLANSIGVGGLPGFISIQPQYWPVFAIGMAIAIVVPFVLTIFFSK 462
|
|
| PTS-II-BC-sucr |
TIGR01996 |
PTS system, sucrose-specific IIBC component; This model represents the fused enzyme II B and C ... |
5-456 |
1.11e-122 |
|
PTS system, sucrose-specific IIBC component; This model represents the fused enzyme II B and C components of the sucrose-specific PTS sugar transporter system. Sucrose is converted to sucrose-6-phosphate in the process of translocation into the cell. Some of these transporters lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). The exceptions to this rule are Staphylococci, Streptococci, Lactococci, Lactobacilli, etc. which contain their own A domain as a C-terminal fusion. This family is closely related to the trehalose transporting PTS IIBC enzymes and the B and C domains of each are described by subfamily-domain level TIGRFAMs models (TIGR00826 and TIGR00852, respectively).
Pssm-ID: 131051 Cd Length: 461 Bit Score: 365.85 E-value: 1.11e-122
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695827872 5 NQQDIDKLIELVGGRGNIATVSHCITRLRFVLNDPAIAKPKEIEQLRMVKGCFTNAGQFQVVIGT-EVGDYYKALLATTG 83
Cdd:TIGR01996 2 YQQVAKEILELLGGKDNIVSVAHCATRLRLVLKDESKIDKKAIENLDGVKGTFFNSGQYQIIIGTgVVNKVYDEIVKLTG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695827872 84 QTSANKEQVKQAARQNMKWHEQLISHFAEIFFPLLPALISGGLILGFRNVIgDLPMSNGQTLAQMHPSLKTIYDFLWLIG 163
Cdd:TIGR01996 82 LSESSTSEQKAEAAKKMNPFQRFARTLSDIFVPIIPAIVATGLLMGLNGML-TAFGLFGLSGVSVAPIPEGLAEMINVFT 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695827872 164 EAIFFYLPVGICWSAVKKMGGTPILGIVLGVTLVSPQLMNAYLLGQQVPEV--WNFGLFTIAKVGYQAQVIPALLAGLTL 241
Cdd:TIGR01996 161 STAFAFLPILIGFSAAKRFGGNPYLGAVIGLIMVHPSLPNAYGVAAGTATGkaWNIFGLHIPVVGYQGTVLPVLVAVWIL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695827872 242 GFIETRLKRIVPDYLYLVIVPVCSLILAVFLAHAIIGPFGRLIGDGVAFAVRHLLTGSFaPIGAALFGFLYAPLVITGVH 321
Cdd:TIGR01996 241 AKIEKFLRKVVPNALDLLLTPFLTLLITGFLTLLVIGPIGRWVGDVLTDGLQWLYDLPG-GLGGLLFGGLYSLIVITGIH 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695827872 322 QTTLAIDMQMI--QSMGGTPVWPLIALSNIAQASAVVGIIIASRKQNEREISVPAAISAYLGVTEPAMYGINLKYRFPML 399
Cdd:TIGR01996 320 HSFHAIETQLLanTKTGGNFLFPIASMANVAQGGAALAVFFKTKDKKLKGLAIPSGLSALLGITEPAIFGVNLRYRKPFI 399
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*....
gi 695827872 400 CAMIGSGLAGLLCGLNGVLANGIGVGGLPGILSIQPTYWQV--YAMAMAIAVVVPIILT 456
Cdd:TIGR01996 400 AALIGGAIGGAYVVLFHVAATAYGLTGIPGFLSILPSGINLlhYIVGMLIAFAVAFIAT 458
|
|
| PtsG1 |
COG1263 |
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific ... |
96-459 |
1.39e-98 |
|
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific [Carbohydrate transport and metabolism];
Pssm-ID: 440875 [Multi-domain] Cd Length: 463 Bit Score: 303.79 E-value: 1.39e-98
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695827872 96 ARQNMKWHEQLISHFAEIFFPLLPALISGGLILGFRNVIGDLPMSNGqtlaqmHPSLKTIYDFLWLIGEAIFFYLPVGIC 175
Cdd:COG1263 1 AKKKKNPLFRFLQKIGGIFMPPIPVLPAAGLLLGLGALLTNPGLLGE------GSFLSGTYQILNAAGDAVFYFLPLLFA 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695827872 176 WSAVKKMGGTPILGIVLGVTLVSPQLMNAYLLGqqvPEVWNFGLFTiAKVGYQAQVIPALLAGLTLGFIETRLKRIVPDY 255
Cdd:COG1263 75 IGAAKGFGGNPALAAVIGYLLVHPTLLNAYAVA---GGYISFLGIP-TLIGYQGGVFPGILAGWLAAYLEKFLKKKLPDA 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695827872 256 LYLVIVPVCSLILAVFLAHAIIGPFGRLIGDGVAFAVrHLLTGSFAPIGAALFGFLYAPLVITGVHQTTLAIDMQMIQSM 335
Cdd:COG1263 151 LGFFFVPILTLLIMVPLALLVIGPIWPPIGNGIAAGL-GWIYGLAGAIGGFIYGFLYRLLVPTGLHHGLNPIFWFLLGGT 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695827872 336 GGTPVWPLIALSNIAQASAVVGIIIASR-KQNEREISVPAAISAYL-GVTEPAMYGINLKYRFPMLCAMIGSGLAGLLCG 413
Cdd:COG1263 230 GDDGLFPILAAAMFGQPGAALAVYLKAKpNKKVKGLAISAALTAFLtGITEPAEFGFNLVAPKLFIAHAIGGGLGGAIAG 309
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 695827872 414 LNGVLANGIGVGGLPGILSIQP---TYWQVYAMAMAIAVVVPIILTTVV 459
Cdd:COG1263 310 LLGVKAFSFGVGGLIDFPSILNpgaTNLLLYLIGLVIAFVYYFVFTFLI 358
|
|
| pts-Glc |
TIGR00852 |
PTS system, maltose and glucose-specific subfamily, IIC component; The PTS Glucose-Glucoside ... |
163-447 |
1.79e-86 |
|
PTS system, maltose and glucose-specific subfamily, IIC component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the E. coli PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. This model is specific for the IIC domain of the Glc family PTS transporters. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]
Pssm-ID: 273299 Cd Length: 289 Bit Score: 266.88 E-value: 1.79e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695827872 163 GEAIFFYLPVGICWSAVKKMGGTPILGIVLGVTLVSPQLMNAYLLGQQVPEvwNFGLFTIAKVGYQAQVIPALLAGLTLG 242
Cdd:TIGR00852 1 GSAAFFFLPLLFAIGAAKGFGGNPYLGAALAGILVHPVLNNAMGVGAQAVG--NFFGFEIAKVGYTGVVGPIIVGAIALA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695827872 243 FIETRLKRIVPDYLYLVIVPVCSLILAVFLAHAIIGPFGRLIGDGVAFAVRHLLTGSFAPIGAALFGFLYAPLVITGVHQ 322
Cdd:TIGR00852 79 LHERFLDKKLPDVLGFFLGPRFVVIIAGFVAILLIGPLGRVWPPVGISALLHWLYSAGGALGGAIFGFLYRLLVPTGLHH 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695827872 323 TTLAIDMQMIQS---MGGTPVWPLIALSNIAQASAVVGIIIASRKQNEREISVPAAISAYLGVTEPAMYGINLKYRFPML 399
Cdd:TIGR00852 159 IFYAIFIQLIAGgtvIGGGQVIPGDALANMAQGGAALAVFFTAGDAKFKSIGLPAAFSAGLGITEPAMYGVALRERRPFV 238
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 695827872 400 CAMIGSGLAGLLCGLNGVLANGIGVGGLPGILSIQPT---YWQVYAMAMAI 447
Cdd:TIGR00852 239 AGLIGSALLTAFLTGITEPLEFLFLFGAPGLYSIHAVlagSIFTVAIGMGI 289
|
|
| PTS-II-ABC-beta |
TIGR01995 |
PTS system, beta-glucoside-specific IIABC component; This model represents a family of PTS ... |
5-456 |
1.74e-74 |
|
PTS system, beta-glucoside-specific IIABC component; This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Pssm-ID: 273919 [Multi-domain] Cd Length: 610 Bit Score: 245.34 E-value: 1.74e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695827872 5 NQQDIDKLIELVGGRGNIATVSHCITRLRFVLNDPAIAkpkEIEQLRMVKGCFT---NAGQFQVVIGTEVGDYYKALLAT 81
Cdd:TIGR01995 1 YQDLAKAIIENVGGKENIESVTHCATRLRFTLKDDAKA---DTEKLKKISGVITvvkSGGQYQVVIGNDVNDVYQALMDV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695827872 82 TGQtSANKEQVKQAARQNmkWHEQLISHFAEIFFPLLPALISGGLILGFRNVigdLPMSNGQTlaqmhpSLKTIYDFLWL 161
Cdd:TIGR01995 78 LGL-DDQAEDDDSKGKKS--ILNKLIDLISGVFTPLLPALAGAGLLKAVLTL---LTMTGLIS------ADSQTYQILNA 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695827872 162 IGEAIFFYLPVGICWSAVKKMGGTPILGIVLGVTLVSPQLMNayLLGQQVPeVWNFGLfTIAKVGYQAQVIPALLAGLTL 241
Cdd:TIGR01995 146 MGDAVFYFLPILLAITAAKRFKVNPYLAAAIGAALLHPTLVA--MVGSGKP-VTFFGI-PVTLMSYSSSVIPVILAVWLM 221
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695827872 242 GFIETRLKRIVPDYLYLVIVPVCSLILAVFLAHAIIGPFGRLIGDGVAFAVRHLLTgsFAP-IGAALFGFLYAPLVITGV 320
Cdd:TIGR01995 222 SYVEKFLKKVIPGALKNFLTPLLVMLITVPLTLLIIGPLGNYAGEGISSGILFLYE--VSPwLAGALLAALWPVLVMFGL 299
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695827872 321 HQTTLAIDMQMIQSMGGTPVW-PLIALSNIAQASAVVGIIIASRKQNEREISVPAAISAYLGVTEPAMYGINLKYRFPML 399
Cdd:TIGR01995 300 HWAMIPIVINNIATQGFDPLIlPASLAANFAQGGAALAVMLRTKNKKLKALAGSATISALFGITEPAIYGVNLPLKKPFY 379
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 695827872 400 CAMIGSGLAGLLCGLNGVLANGIGVGGLPGILS-IQP-TYWQVYAM--AMAIAVVVPIILT 456
Cdd:TIGR01995 380 AAMIGGAVGGAIIGIGSVKAFTAFAPGLLGLPMfINPsDGANFISAliAIVISFVVSFVLT 440
|
|
| PRK09824 |
PRK09824 |
PTS system beta-glucoside-specific transporter subunits IIABC; Provisional |
10-413 |
3.26e-45 |
|
PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Pssm-ID: 236627 [Multi-domain] Cd Length: 627 Bit Score: 166.81 E-value: 3.26e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695827872 10 DKLIELVGGRGNIATVSHCITRLRFVLNDPAIAKPKEIEQLRMVKGCFTNAGQFQVVIGTEVGDYYKALLATTGQTSANK 89
Cdd:PRK09824 8 REIVAGVGGADNIVSLMHCATRLRFKLKDNSKAQAEVLKKNPGVIMVVESGGQFQVVIGNHVADVFLAVNSVAGLGEKAQ 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695827872 90 EQVKQAARQNMkwHEQLISHFAEIFFPLLPALISGGLILGFrnvigdlpMSNGQTLAQMHPSLKTiYDFLWLIGEAIFFY 169
Cdd:PRK09824 88 QAPENDKKGNL--LNRFIDVISGIFTPLIGVMAATGILKGM--------LALALTFGWTTEQSGT-YKILFAASDALFFF 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695827872 170 LPVGICWSAVKKMGGTPILGIVLGVTLVSPQLMNAYLLGQQV-PEVWNFGLFTIAKVGYQAQVIPALLAGLTLGFIETRL 248
Cdd:PRK09824 157 FPIILGYTAGKKFGGNPFTAMVIGGALVHPLMIAAFEAGQKAdALGLDFLGIPVTLLNYSSSVIPIIFSAWLCSILERRL 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695827872 249 KRIVPDYLYLVIVPVCSLILAVFLAHAIIGP----FGRLIGDGvafavrHLLTGSFAP-IGAALFGFLYAPLVITGVHQT 323
Cdd:PRK09824 237 NAWLPSAIKNFFTPLLCLMVIVPLTFLLIGPlatwLSELLAAG------YQWLYQAVPaFAGAVMGAFWQVFVIFGLHWG 310
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695827872 324 TLAIDMQMIQSMGGTPVWPLIALSNIAQASAVVGIIIASRKQNEREISVPAAISAYLGVTEPAMYGINLKYRFPMLCAMI 403
Cdd:PRK09824 311 LVPLMINNLTVLGHDTMLPLLMPAVMAQVGAALGVFLCTRDAQKKVVAGSAFLAGLFGITEPAVYGVNLPLKRPFIFGCI 390
|
410
....*....|
gi 695827872 404 GSGLAGLLCG 413
Cdd:PRK09824 391 SGALGAAIIG 400
|
|
| murP |
PRK09586 |
PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed |
1-456 |
7.27e-40 |
|
PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed
Pssm-ID: 181971 [Multi-domain] Cd Length: 476 Bit Score: 149.44 E-value: 7.27e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695827872 1 MSKVNQQDIDKLIELVGGRGNIATVSHCITRLRFVLNDPAIAKPKEIEQLRMVKGCFTNAGQFQVVIG----TEVGDYYK 76
Cdd:PRK09586 1 MAKISSELLNTILTRVGGPGNIASCGNCMTRLRLTLHDSSLVDPAAIKTIEGVKGVILSDDQVQVVLGpgkaQRAAKAMN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695827872 77 ALLATTGQTSANKEQVKQAARQNMKWHE-----QLISHFAEIFFPLLPALISGGLILGFRNVIGD---LPMSNGQTLAQM 148
Cdd:PRK09586 81 ELLGEAAAPVQDLAEIAAQNKRQLKAKQtsgvqQFLAKFATIFTPLIPGFIAAGLLLGIATLIEQvmhVPADAQGTLPDA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695827872 149 HPSLKtiydflwLIGEAIFFYLPVGICWSAVKKMGGTPILGIVLGVTLV---SPQLMNAYLLGQQvpevwNFGLFTIAKV 225
Cdd:PRK09586 161 LNYMK-------VFSKGLFTFLSILIGYNAQQAFGGTGVNGAIIASLFLlgyNPAATTGYYAGFH-----DFFGLPIDPR 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695827872 226 GyqaQVIPALLAGLTLGFIETRLKRIVPDYLYLVIVPVCSLILAVFLAHAIIGPFGRLIGDGVAFAVRHLltgSFAPIGA 305
Cdd:PRK09586 229 G---NIIGVLIAAIAGARIERMVRRFMPDDLDMILTSLITLLITGALAFLIIMPLGGWLFEGMSWLFMHL---NSNPFGC 302
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695827872 306 ALFGFLYAPLVITGVHQTTLAIDMQMIQSMGGTPVWPLIALSNIAQASAVVGIIIASRKQNEREISVPAAI-SAYLGVTE 384
Cdd:PRK09586 303 AVLAGLFLIAVVFGVHQGFIPVYFALMDSQGFNSLFPILAMAGAGQVGAALALYWRAQKHSALRTQVKGAIiPGLLGVGE 382
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695827872 385 PAMYGINLKYRFPMLCAMIGSGLAGLLCGLNGVLanGIGVG-----------GLPGILSIQPTY--WQVYAMAMAIAVVV 451
Cdd:PRK09586 383 PLIYGVTLPRMKPFVTACLGGAAGGFFIGLIAWL--GLPVGlnsvfgpsglvALPLMTSAQGILpgMAVYAGGLLVAYVC 460
|
....*
gi 695827872 452 PIILT 456
Cdd:PRK09586 461 GFIFT 465
|
|
| PRK09796 |
PRK09796 |
PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional |
12-459 |
1.18e-37 |
|
PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional
Pssm-ID: 182081 Cd Length: 472 Bit Score: 143.40 E-value: 1.18e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695827872 12 LIELVGGRGNIATVSHCITRLRFVLNDPAIAKPKEIEQLRMVKGCFTNAGQFQVVIGTEVGDYYKALLATTGQTSANKEQ 91
Cdd:PRK09796 12 VIAALGGVDNISAVTHCMTRLRFVIKDDALIDSPTLKTIPGVLGVVRSDNQCQVIIGNTVSQAFQEVVSLLPGDMQPAQP 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695827872 92 VKQAARQNMKWHEQLISHFAEIFFPLLPALIsGGLILGFRNVIGDlpmsngqtLAQMHPSLKTIYDFLWLIGEAIFFYLP 171
Cdd:PRK09796 92 VGKPKLTLRRIGAGILDALIGTMSPLIPAII-GGSMVKLLAMILE--------MSGVLTKGSPTLTILNVIGDGAFFFLP 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695827872 172 VGICWSAVKKMGGTPILGIVLGVTLVSP---QLMNAYLLGQQVpevwNFGLFTIAKVGYQAQVIPALLAGLTLGFIETRL 248
Cdd:PRK09796 163 LMVAASAAIKFKTNMSLAIAIAGVLVHPsfiELMAKAAQGEHV----EFALIPVTAVKYTYTVIPALVMTWCLSYIERWV 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695827872 249 KRIVPDYLYLVIVPVCSLILAVFLAHAIIGPFGRLIGDGVAfAVRHLLTGSFAPIGAALFGFLYAPLVITGVHQTTLAID 328
Cdd:PRK09796 239 DRITPAVTKNFLKPMLIVLIAAPLAILLIGPIGIWIGSAIS-ALVYTIHGYLGWLSVAIMGALWPLLVMTGMHRVFTPTI 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695827872 329 MQMIQSMGGTP-VWPLIALSNIAQASAVVGIIIASRKQNEREISVPAAISAYL-GVTEPAMYGINLKYRFPMLCAMIGSG 406
Cdd:PRK09796 318 IQTIAETGKEGmVMPSEIGANLSLGGSSLAVAWKTKNPELRQTALAAAASAIMaGISEPALYGVAIRLKRPLIASLISGF 397
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 695827872 407 LAGLLCGLNGVLANGIGVGGLpgILSIQ---PT-----YWqVYAMaMAIAVVVPIILTTVV 459
Cdd:PRK09796 398 ICGAVAGMAGLASHSMAAPGL--FTSVQffdPAnpmsiVW-VFAV-MALAVVLSFILTLLL 454
|
|
| PTS_IIB_glc |
cd00212 |
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: ... |
6-83 |
1.90e-26 |
|
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation
Pssm-ID: 238130 [Multi-domain] Cd Length: 78 Bit Score: 101.84 E-value: 1.90e-26
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 695827872 6 QQDIDKLIELVGGRGNIATVSHCITRLRFVLNDPAIAKPKEIEQLRMVKGCFTNAGQFQVVIGTEVGDYYKALLATTG 83
Cdd:cd00212 1 EQLAKDILEALGGKENIVSLDHCATRLRLTVKDESKVDEAALKKLGGVKGVVKNGGQYQVIIGPGVADVYKEAIKLLG 78
|
|
| PTS_EIIC |
pfam02378 |
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase ... |
112-406 |
6.21e-26 |
|
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The sugar-specific permease of the PTS consists of three domains (IIA, IIB and IIC). The IIC domain catalyzes the transfer of a phosphoryl group from IIB to the sugar substrate.
Pssm-ID: 367061 Cd Length: 315 Bit Score: 107.43 E-value: 6.21e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695827872 112 EIFFPLLPALISGGLILGfrnvIGDLPMSNGQTLAQMHPSLKTIYDFLWLIGEAIFFYLPVGICWSAVKKM-GGTPILGI 190
Cdd:pfam02378 2 DGFMPPIPLLIAGGILLG----LGNLPNDTTGLPAGGFTGDSPLAEILKQAGSAAFGILPILFAIGIAYGLaGGDGVAGA 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695827872 191 VLGVTLVSPQLMNAY---LLGQQVPEVWNFGLFTIAKVGYQAQVIPALLAGLTLGFIETRLKRIVPDYLYLVIVPVCSLI 267
Cdd:pfam02378 78 AGLIGLLSFNLAAAIsvaLTAAGLSGGGNILGIGLGATGVFGAIIPGLLAAYLYNRFEKNITIKLPDSLPFFVGKRFVPI 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695827872 268 LAVFLAHAIIGPFGRLIGDGVAFAVRH---LLTGSFAPIGAALFGFLYAPLVITGVHQTTLAIDMQMI-----QSMGGTP 339
Cdd:pfam02378 158 ITGFVTLLVIGPVLGLIWPAIQGGLNAlglLLIIAGGILGGLIFGFLERLLWPFGLHGAFIAIFWFLPiggsnPIANQQA 237
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 695827872 340 VWP----------LIALSNIAQASAVVGII-IASRKQNEREISVPAAISAYLGVTEPAMYGINLKYRFPMLCAMIGSG 406
Cdd:pfam02378 238 YGAgaahiltggfDVMFGGPGATLALYAAAfLFKKSKVKKLLGSAALTPFLFGITEPLEFGFPFVLNPPFFIPAILAG 315
|
|
| PtsG2 |
COG1264 |
Phosphotransferase system IIB components [Carbohydrate transport and metabolism]; |
6-80 |
8.12e-24 |
|
Phosphotransferase system IIB components [Carbohydrate transport and metabolism];
Pssm-ID: 440876 [Multi-domain] Cd Length: 76 Bit Score: 94.41 E-value: 8.12e-24
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 695827872 6 QQDIDKLIELVGGRGNIATVSHCITRLRFVLNDPAIAKPKEIEQLrMVKGCFTNAGQFQVVIGTEVGDYYKALLA 80
Cdd:COG1264 1 KELAKDILEALGGKENIVSVDHCATRLRVTVKDPSKVDEAALKKL-GVKGVVKNGGQVQVIIGPGVDKVADEIEK 74
|
|
| EIIB_glc |
TIGR00826 |
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) ... |
30-111 |
1.02e-16 |
|
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the E. coli PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. This model is specific for the IIB domain of the Glc family PTS transporters. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]
Pssm-ID: 273288 [Multi-domain] Cd Length: 88 Bit Score: 75.09 E-value: 1.02e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695827872 30 TRLRFVLNDPAIAKPKEIEQLRMVKGCFTNAGQFQVVIGTE-VGDYYKA---LLATTGQTS-ANKEQVKQAARQNMKWHE 104
Cdd:TIGR00826 1 TRLRLKTPGREKADEEAIAAGEGVKGVFTAAGQIQALGGTGnVNKVDACitrLRVGVADVSkVDDAVLKKLGAHGVNPLQ 80
|
....*..
gi 695827872 105 QLISHFA 111
Cdd:TIGR00826 81 RAVQVIS 87
|
|
| PTS_EIIB |
pfam00367 |
phosphotransferase system, EIIB; |
11-41 |
3.97e-11 |
|
phosphotransferase system, EIIB;
Pssm-ID: 459785 [Multi-domain] Cd Length: 32 Bit Score: 57.38 E-value: 3.97e-11
10 20 30
....*....|....*....|....*....|.
gi 695827872 11 KLIELVGGRGNIATVSHCITRLRFVLNDPAI 41
Cdd:pfam00367 2 EILEALGGKENIKSVDHCATRLRLTVKDESK 32
|
|
| PRK14905 |
PRK14905 |
triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; ... |
11-82 |
3.26e-08 |
|
triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional
Pssm-ID: 184898 [Multi-domain] Cd Length: 355 Bit Score: 55.42 E-value: 3.26e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 695827872 11 KLIELVGGRGNIATVSHCITRLRFVL-NDPAIAKpKEIEQLRMVKGCFTNAGQFQVVIG----TEVGDYYKALLATT 82
Cdd:PRK14905 280 QLIDHLGGKDNISALTHCASRIRVMLrNDGHIDK-SAIEKIDCVKGLFSIANQYQIILGagivEKIHEEMKALLARE 355
|
|
| PRK09702 |
PRK09702 |
PTS sugar transporter subunit IIB; |
12-88 |
6.77e-05 |
|
PTS sugar transporter subunit IIB;
Pssm-ID: 77355 [Multi-domain] Cd Length: 161 Bit Score: 43.16 E-value: 6.77e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 695827872 12 LIELVGGRGNIATVSHCITRLRFVLNDPAIAKPKEIEQLRMVKGCFTNAGQFQVVIGTEVGDYYKAL--LATTGQTSAN 88
Cdd:PRK09702 76 ILQALGGVGNISSINNCATRLRIALHDMSQTLDDEVFKKLGAHGVFRSGDAIQVIIGLHVSQLREQLdsLINSHQSAEN 154
|
|
| PRK10110 |
PRK10110 |
PTS maltose transporter subunit IICB; |
12-71 |
6.04e-04 |
|
PTS maltose transporter subunit IICB;
Pssm-ID: 182245 [Multi-domain] Cd Length: 530 Bit Score: 42.41 E-value: 6.04e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 695827872 12 LIELVGGRGNIATVSHCITRLRFVLNDPAIAKPKEIEQLRMVKGCFTNAGQFQVVIGTEV 71
Cdd:PRK10110 455 ILEALGGADNIVSLDNCITRLRLSVKDMSLVDVQALKDNRAIGVVQLNQHNLQVVIGPQV 514
|
|
| |
