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Conserved domains on  [gi|690414078|ref|WP_031943237|]
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MULTISPECIES: nuclear transport factor 2 family protein [Proteobacteria]

Protein Classification

nuclear transport factor 2 family protein( domain architecture ID 10629346)

nuclear transport factor 2 (NTF2) family protein with a DUF4440 domain, similar to Streptomyces maritimus EncO that is encoded on the enterocin (enc) biosynthesis gene cluster

CATH:  3.10.450.50
SCOP:  3000472

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COG4994 super family cl44183
Uncharacterized protein CV0675, UCP033623 family [Function unknown];
3-115 4.42e-07

Uncharacterized protein CV0675, UCP033623 family [Function unknown];


The actual alignment was detected with superfamily member COG4994:

Pssm-ID: 444018  Cd Length: 121  Bit Score: 44.94  E-value: 4.42e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 690414078   3 AALKEQIAGLERRLW---LEGS-EAFDKIMAPEcFMVFPKPIGILTRQEILASLGNFARWDEVTIEGGHWQLPTENVVVF 78
Cdd:COG4994    6 DDLLEELRELERALLdpeVRADrARLEALLHPD-FVEIGRSGRRYDRAEVLAALADEASMGPIELSDFELRRLSPDVVLL 84

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 690414078  79 SYEAQAKRGEQpyAAFCSSTYVFIGQVWRIVLHQHTV 115
Cdd:COG4994   85 TYRAEDEGSGR--ASLRSSLWRREDGGWRLRFHQGTP 119
 
Name Accession Description Interval E-value
COG4994 COG4994
Uncharacterized protein CV0675, UCP033623 family [Function unknown];
3-115 4.42e-07

Uncharacterized protein CV0675, UCP033623 family [Function unknown];


Pssm-ID: 444018  Cd Length: 121  Bit Score: 44.94  E-value: 4.42e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 690414078   3 AALKEQIAGLERRLW---LEGS-EAFDKIMAPEcFMVFPKPIGILTRQEILASLGNFARWDEVTIEGGHWQLPTENVVVF 78
Cdd:COG4994    6 DDLLEELRELERALLdpeVRADrARLEALLHPD-FVEIGRSGRRYDRAEVLAALADEASMGPIELSDFELRRLSPDVVLL 84

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 690414078  79 SYEAQAKRGEQpyAAFCSSTYVFIGQVWRIVLHQHTV 115
Cdd:COG4994   85 TYRAEDEGSGR--ASLRSSLWRREDGGWRLRFHQGTP 119
 
Name Accession Description Interval E-value
COG4994 COG4994
Uncharacterized protein CV0675, UCP033623 family [Function unknown];
3-115 4.42e-07

Uncharacterized protein CV0675, UCP033623 family [Function unknown];


Pssm-ID: 444018  Cd Length: 121  Bit Score: 44.94  E-value: 4.42e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 690414078   3 AALKEQIAGLERRLW---LEGS-EAFDKIMAPEcFMVFPKPIGILTRQEILASLGNFARWDEVTIEGGHWQLPTENVVVF 78
Cdd:COG4994    6 DDLLEELRELERALLdpeVRADrARLEALLHPD-FVEIGRSGRRYDRAEVLAALADEASMGPIELSDFELRRLSPDVVLL 84

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 690414078  79 SYEAQAKRGEQpyAAFCSSTYVFIGQVWRIVLHQHTV 115
Cdd:COG4994   85 TYRAEDEGSGR--ASLRSSLWRREDGGWRLRFHQGTP 119
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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