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Conserved domains on  [gi|655253511|ref|WP_028664097|]
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SWIM zinc finger family protein [Runella zeae]

Protein Classification

SWIM zinc finger family protein( domain architecture ID 10516955)

SWIM (SWI2/SNF2 and MuDR) zinc finger family protein similar to Homo sapiens zinc finger SWIM domain-containing protein 7 that is involved in early stages of the homologous recombination repair (HRR) pathway of double-stranded DNA breaks arising during DNA replication or induced by DNA-damaging agents

Gene Ontology:  GO:0008270
PubMed:  12151216

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SWIM pfam04434
SWIM zinc finger; This domain is found in bacterial, archaeal and eukaryotic proteins. It is ...
 508-537 3.92e-03

SWIM zinc finger; This domain is found in bacterial, archaeal and eukaryotic proteins. It is predicted to be organized into two N-terminal beta-strands and a C-terminal alpha helix, thus possibly adopting a fold similar to that of the C2H2 zinc finger (pfam00096). SWIM is thought to be a versatile domain that can interact with DNA or proteins in different contexts.


:

Pssm-ID: 309540  Cd Length: 38  Bit Score: 35.09  E-value: 3.92e-03
                          10        20        30
                  ....*....|....*....|....*....|
gi 655253511  508 NDERLVQARCDCDFYisnKLYKGPCEHVLA 537
Cdd:pfam04434   6 DLDGLEKASCSCPDF---QLNGIPCKHALA 32
 
Name Accession Description Interval E-value
SWIM pfam04434
SWIM zinc finger; This domain is found in bacterial, archaeal and eukaryotic proteins. It is ...
 508-537 3.92e-03

SWIM zinc finger; This domain is found in bacterial, archaeal and eukaryotic proteins. It is predicted to be organized into two N-terminal beta-strands and a C-terminal alpha helix, thus possibly adopting a fold similar to that of the C2H2 zinc finger (pfam00096). SWIM is thought to be a versatile domain that can interact with DNA or proteins in different contexts.


Pssm-ID: 309540  Cd Length: 38  Bit Score: 35.09  E-value: 3.92e-03
                          10        20        30
                  ....*....|....*....|....*....|
gi 655253511  508 NDERLVQARCDCDFYisnKLYKGPCEHVLA 537
Cdd:pfam04434   6 DLDGLEKASCSCPDF---QLNGIPCKHALA 32
 
Name Accession Description Interval E-value
SWIM pfam04434
SWIM zinc finger; This domain is found in bacterial, archaeal and eukaryotic proteins. It is ...
 508-537 3.92e-03

SWIM zinc finger; This domain is found in bacterial, archaeal and eukaryotic proteins. It is predicted to be organized into two N-terminal beta-strands and a C-terminal alpha helix, thus possibly adopting a fold similar to that of the C2H2 zinc finger (pfam00096). SWIM is thought to be a versatile domain that can interact with DNA or proteins in different contexts.


Pssm-ID: 309540  Cd Length: 38  Bit Score: 35.09  E-value: 3.92e-03
                          10        20        30
                  ....*....|....*....|....*....|
gi 655253511  508 NDERLVQARCDCDFYisnKLYKGPCEHVLA 537
Cdd:pfam04434   6 DLDGLEKASCSCPDF---QLNGIPCKHALA 32
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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