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Conserved domains on  [gi|654999239|ref|WP_028448441|]
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flagellinolysin [Chitinibacter tainanensis]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
flagella_HExxH super family cl41492
flagellinolysin; Flagellinolysin is a variant form of bacterial flagellin in with the normally ...
 110-510 2.43e-145

flagellinolysin; Flagellinolysin is a variant form of bacterial flagellin in with the normally hypervariable central region contains an M9 (MEROPS classification) family metalloprotease domain, with its signature HExxH motif. The founding member of the family, from the pathogen Clostridium haemolyticum, shows EDTA-sensitive metalloprotease activity. The large count of flagellin subunits in a complete flagellum means the capacity of flagellinolysin to perform as a protease may have implications for host-pathogen relationships.


The actual alignment was detected with superfamily member NF033876:

Pssm-ID: 468217  Cd Length: 380  Bit Score: 424.76  E-value: 2.43e-145
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239 110 LQAEANQLLQSLSTQAQNAEFNGQKIFAQSESSLGGDAARRGIIDGLKMGWLEEAETRITNLLGITADGVDLNIVFEPPA 189
Cdd:NF033876   1 LQKEINQLKQEIDRIAETTEFNGKKLFDQGASVGSADPDKQAILDGLKSGWLENAEDLIKEYYGLTADGADLTVNLEYTD 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239 190 GSGlsnvaggaaAAVGSTTGTADANGKTLNMFLWIDPEDFKPPNLPDGGgvamgNGTVYSDRIIAHEMVHAVMGRTMNFA 269
Cdd:NF033876  81 GAG---------GTLAYVSSGSGGGGKGGNLTLTIDMADFSPANLPNGG-----TAPQYLDRTIAHEMVHAVMGRTMNFS 146

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239 270 PMDTWFKEGMAEFIHGADERLFADTSGGTSTAVALSY---KTNPASGSAVYSGGYLAVRYMHQQIKAAGGEGIKDIMTYL 346
Cdd:NF033876 147 SLPTWFIEGTAEFIHGADERLAADLAGGTSDAAGVAAlfnGGAWTSTSADYSAGYAAVRYLHDQIKAAGGGGIKDIMQYL 226

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239 347 SKNTGSTLDQALTNASHGAFASFNDFDSKFLAAAATpalFTNLGVNLTNADTGALGGADVDGKAPLSSTDVFKDQGTQFN 426
Cdd:NF033876 227 KANAGSTLDQALAAATGGAFATEADFLADFNANGAA---FIKNYMDLTNADTGAIGGLDADGGPVLTAESVVPDTGSYPG 303

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239 427 KQVLKGFKQVWAAGTtgidvqgaTGLKETTFQVGNGAGQKITVQFGGMSAKNLGLDDIDLVKLPTLAIAHADEALDYING 506
Cdd:NF033876 304 EDPLSGFNVIWPTFS--------GAGTTVQLQVGANAGQTIEISFGDMSAEALGLDDVDVSTDATSAIDIFDKALDYVSN 375


                 ....
gi 654999239 507 ERAK 510
Cdd:NF033876 376 QRAY 379
FlgL COG1344
Flagellin and related hook-associated protein FlgL [Cell motility];
1-137 6.86e-43

Flagellin and related hook-associated protein FlgL [Cell motility];


:

Pssm-ID: 440955 [Multi-domain]  Cd Length: 245  Bit Score: 153.87  E-value: 6.86e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239   1 MQITTNVPALNTQRHLAQTGTGLSQVLSRLSSGLRINSAKDDAAGLAISSRMESLIRGDQQAVRNMNDGVSLLQTAEGAM 80
Cdd:COG1344    1 MRISTNMSALNALRNLNRTQSDLAKLQEQLSSGKRINSASDDPAGAAIALRLRSQIRGLEQYQRNANDAISRLQTAEGAL 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 654999239  81 SNAADVVQRIRELGVQAANGSLSGSDRQALQAEANQLLQSLSTQAQNAEFNGQKIFA 137
Cdd:COG1344   81 GEITDILQRARELAVQAANGTLSDEDRAAIAAELEQLLDQLLSIANTTDFNGRYLFA 137
PRK12802 super family cl31395
flagellin; Provisional
 456-579 1.39e-25

flagellin; Provisional


The actual alignment was detected with superfamily member PRK12802:

Pssm-ID: 139237 [Multi-domain]  Cd Length: 282  Bit Score: 106.50  E-value: 1.39e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239 456 TFQVGNGAGQKITVQFG---GMSAKNLGLDDIDLVKLPTLAIAHA---------DEALDYINGERAKAGANLSRLQSAIN 523
Cdd:PRK12802 146 TFQVGANTGQSNQITFGlsaSFDATGLGVGSGTLITGADSAAAETnaqaaitaiDAALQTINTTRADLGAAQNRLQSTIS 225

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 654999239 524 NVSNTIENNSAARSRIRDTDYAQETANLTRQQILQQAGTAMLAQANSLPQLALSLL 579
Cdd:PRK12802 226 NLQNINENASAARGRVQDTDFAAETAQLTKQQTLQQASTSVLAQANQLPSAVLKLL 281
 
Name Accession Description Interval E-value
flagella_HExxH NF033876
flagellinolysin; Flagellinolysin is a variant form of bacterial flagellin in with the normally ...
 110-510 2.43e-145

flagellinolysin; Flagellinolysin is a variant form of bacterial flagellin in with the normally hypervariable central region contains an M9 (MEROPS classification) family metalloprotease domain, with its signature HExxH motif. The founding member of the family, from the pathogen Clostridium haemolyticum, shows EDTA-sensitive metalloprotease activity. The large count of flagellin subunits in a complete flagellum means the capacity of flagellinolysin to perform as a protease may have implications for host-pathogen relationships.


Pssm-ID: 468217  Cd Length: 380  Bit Score: 424.76  E-value: 2.43e-145
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239 110 LQAEANQLLQSLSTQAQNAEFNGQKIFAQSESSLGGDAARRGIIDGLKMGWLEEAETRITNLLGITADGVDLNIVFEPPA 189
Cdd:NF033876   1 LQKEINQLKQEIDRIAETTEFNGKKLFDQGASVGSADPDKQAILDGLKSGWLENAEDLIKEYYGLTADGADLTVNLEYTD 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239 190 GSGlsnvaggaaAAVGSTTGTADANGKTLNMFLWIDPEDFKPPNLPDGGgvamgNGTVYSDRIIAHEMVHAVMGRTMNFA 269
Cdd:NF033876  81 GAG---------GTLAYVSSGSGGGGKGGNLTLTIDMADFSPANLPNGG-----TAPQYLDRTIAHEMVHAVMGRTMNFS 146

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239 270 PMDTWFKEGMAEFIHGADERLFADTSGGTSTAVALSY---KTNPASGSAVYSGGYLAVRYMHQQIKAAGGEGIKDIMTYL 346
Cdd:NF033876 147 SLPTWFIEGTAEFIHGADERLAADLAGGTSDAAGVAAlfnGGAWTSTSADYSAGYAAVRYLHDQIKAAGGGGIKDIMQYL 226

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239 347 SKNTGSTLDQALTNASHGAFASFNDFDSKFLAAAATpalFTNLGVNLTNADTGALGGADVDGKAPLSSTDVFKDQGTQFN 426
Cdd:NF033876 227 KANAGSTLDQALAAATGGAFATEADFLADFNANGAA---FIKNYMDLTNADTGAIGGLDADGGPVLTAESVVPDTGSYPG 303

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239 427 KQVLKGFKQVWAAGTtgidvqgaTGLKETTFQVGNGAGQKITVQFGGMSAKNLGLDDIDLVKLPTLAIAHADEALDYING 506
Cdd:NF033876 304 EDPLSGFNVIWPTFS--------GAGTTVQLQVGANAGQTIEISFGDMSAEALGLDDVDVSTDATSAIDIFDKALDYVSN 375


                 ....
gi 654999239 507 ERAK 510
Cdd:NF033876 376 QRAY 379
PRK08869 PRK08869
polar flagellin E;
3-580 1.51e-67

polar flagellin E;


Pssm-ID: 236344 [Multi-domain]  Cd Length: 376  Bit Score: 223.65  E-value: 1.51e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239   3 ITTNVPALNTQRHLAQTGTGLSQVLSRLSSGLRINSAKDDAAGLAISSRMESLIRGDQQAVRNMNDGVSLLQTAEGAMSN 82
Cdd:PRK08869   4 VNTNVSAMTAQRNLNGATSALSQSMERLSSGKRINSAKDDAAGLQISNRLTTQIRGLDVAVRNANDGISIAQTAEGAMNE 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239  83 AADVVQRIRELGVQAANGSLSGSDRQALQAEANQLLQSLSTQAQNAEFNGQKIFAQSESS----LGGDAarrgiidglkm 158
Cdd:PRK08869  84 TTNILQRMRDLSLQSANGSNSASDRQALQEEVTALNDELNRIAETTSFGGTKLLNGSFGTksfqIGANS----------- 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239 159 gwleeAETRITNLLGITADGvdlnivfepPAGSGLSnvagGAAAAVGSTTGTADANGKTLNMflwidpedfkppnlpdgg 238
Cdd:PRK08869 153 -----GEAVSLDLKSMRSDA---------KIMGGVS----YDAEGGADKDWTVGAGNTDLNV------------------ 196

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239 239 gvamgngtvysdriiahemvhavmgrtmnfapmdtwfkegmaefihgaderLFADTSGGTSTavalsyktnpasgsavys 318
Cdd:PRK08869 197 ---------------------------------------------------SFDDKGGETQA------------------ 207

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239 319 ggylavrymhQQIKAAGGEGIKDIMTYLSKNTGstldqaLTNAShgafasfndfdskflaaaatpalftnlgvnltnadt 398
Cdd:PRK08869 208 ----------ITINAKAGDDIEELATYINGQTD------GVGAS------------------------------------ 235

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239 399 galggADVDGKAPLSStdvfkdqgtqfnkqvlkgfkqvwAAGTTGIDVQGATGLketTFQVGNGAGQKITVqfggmsakn 478
Cdd:PRK08869 236 -----VSEDGKLQLFA-----------------------AGQKVSGGVSFSGGL---AAELGLGNATAVTV--------- 275

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239 479 lglDDIDL--VKLPTLAIAHADEALDYINGERAKAGANLSRLQSAINNVSNTIENNSAARSRIRDTDYAQETANLTRQQI 556
Cdd:PRK08869 276 ---DDLDIstVGGAQQAVAVIDAALKYVDSHRADLGAFQNRFTHAINNLQNISENLSASNSRIKDTDFAKETTELTKAQI 352

                        570       580
                 ....*....|....*....|....
gi 654999239 557 LQQAGTAMLAQANSLPQLALSLLR 580
Cdd:PRK08869 353 LQQAGTSILAQAKQAPQSALSLLQ 376
FlgL COG1344
Flagellin and related hook-associated protein FlgL [Cell motility];
1-137 6.86e-43

Flagellin and related hook-associated protein FlgL [Cell motility];


Pssm-ID: 440955 [Multi-domain]  Cd Length: 245  Bit Score: 153.87  E-value: 6.86e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239   1 MQITTNVPALNTQRHLAQTGTGLSQVLSRLSSGLRINSAKDDAAGLAISSRMESLIRGDQQAVRNMNDGVSLLQTAEGAM 80
Cdd:COG1344    1 MRISTNMSALNALRNLNRTQSDLAKLQEQLSSGKRINSASDDPAGAAIALRLRSQIRGLEQYQRNANDAISRLQTAEGAL 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 654999239  81 SNAADVVQRIRELGVQAANGSLSGSDRQALQAEANQLLQSLSTQAQNAEFNGQKIFA 137
Cdd:COG1344   81 GEITDILQRARELAVQAANGTLSDEDRAAIAAELEQLLDQLLSIANTTDFNGRYLFA 137
PRK12802 PRK12802
flagellin; Provisional
 1-143 4.08e-36

flagellin; Provisional


Pssm-ID: 139237 [Multi-domain]  Cd Length: 282  Bit Score: 136.55  E-value: 4.08e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239   1 MQITTNVPALNTQRHLAQTGTGLSQVLSRLSSGLRINSAKDDAAGLAISSRMESLIRGDQQAVRNMNDGVSLLQTAEGAM 80
Cdd:PRK12802   3 LTVNTNITSLTVQKNLSRASDALSTSMTRLSSGLKINSAKDDAAGLQIATRQTSQIRGQTQAIKNANDGISIAQTAEGAL 82

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 654999239  81 SNAADVVQRIRELGVQAANGSLSGSDRQALQAEANQLLQSLSTQAQNAEFNGQKIFAQSESSL 143
Cdd:PRK12802  83 QESTNILQRMRELAVQSRNDSNDSTDRAALNKEFTTMLDEITRIATSTTLNGKNLLDGSAGTM 145
Flagellin_N pfam00669
Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial ...
 3-139 4.02e-34

Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial flagella. This family includes flagellins and hook associated protein 3. Structurally this family forms an extended helix that interacts with pfam00700.


Pssm-ID: 425809 [Multi-domain]  Cd Length: 139  Bit Score: 126.30  E-value: 4.02e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239    3 ITTNVPALNTQRHLAQTGTGLSQVLSRLSSGLRINSAKDDAAGLAISSRMESLIRGDQQAVRNMNDGVSLLQTAEGAMSN 82
Cdd:pfam00669   1 INTNSAALAARSNLNKNQAELSKAQERLSTGLRINSALDDAAGLAISVSLRAQIAGLSQAVRNNSLGIGRLQTAQGALSE 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 654999239   83 AADVVQRIRELGVQAANGSLSGSDRQALQAEANQLLQSLSTQAQNAEFNGQKIFAQS 139
Cdd:pfam00669  81 VTDILQRMKELAVQASNGGNSDIDRASIQAEIQQLTDELNNIANTTSFNGEYLLAGI 137
PRK12802 PRK12802
flagellin; Provisional
 456-579 1.39e-25

flagellin; Provisional


Pssm-ID: 139237 [Multi-domain]  Cd Length: 282  Bit Score: 106.50  E-value: 1.39e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239 456 TFQVGNGAGQKITVQFG---GMSAKNLGLDDIDLVKLPTLAIAHA---------DEALDYINGERAKAGANLSRLQSAIN 523
Cdd:PRK12802 146 TFQVGANTGQSNQITFGlsaSFDATGLGVGSGTLITGADSAAAETnaqaaitaiDAALQTINTTRADLGAAQNRLQSTIS 225

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 654999239 524 NVSNTIENNSAARSRIRDTDYAQETANLTRQQILQQAGTAMLAQANSLPQLALSLL 579
Cdd:PRK12802 226 NLQNINENASAARGRVQDTDFAAETAQLTKQQTLQQASTSVLAQANQLPSAVLKLL 281
flagell_flgL TIGR02550
flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated ...
 3-137 4.49e-23

flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated proteins designated FlgL (or HAP3) encoded in bacterial flagellar operons. A N-terminal region of about 150 residues and a C-terminal region of about 85 residues are conserved. Members show considerable length heterogeneity between these two well-conserved terminal regions; the seed alignment 486 columns, 393 of which are represented in the model, while members of this family are from 287 to over 500 residues in length. This model distinguishes FlgL from the flagellin gene product FliC. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274195 [Multi-domain]  Cd Length: 306  Bit Score: 99.73  E-value: 4.49e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239    3 ITTNVPALNTQRHLAQTGTGLSQVLSRLSSGLRINSAKDDAAGLAISSRMESLIRGDQQAVRNMNDGVSLLQTAEGAMSN 82
Cdd:TIGR02550   2 VSTNMLYNNSLNSITNNQSRLAKLQQQLSSGKRINKPSDDPVAAAQALNLNQELAQLEQYQKNIDDAKNWLSQTETALSS 81

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 654999239   83 AADVVQRIRELGVQAANGSLSGSDRQALQAEANQLLQSLSTQAQNAEFNGQKIFA 137
Cdd:TIGR02550  82 VGDVLQRARELAVQAANGTLSDDDRKAIAKEIKQLLDQLVNLANTKDGNGRYIFS 136
FlgL COG1344
Flagellin and related hook-associated protein FlgL [Cell motility];
491-580 2.14e-22

Flagellin and related hook-associated protein FlgL [Cell motility];


Pssm-ID: 440955 [Multi-domain]  Cd Length: 245  Bit Score: 96.47  E-value: 2.14e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239 491 TLAIAHADEALDYINGERAKAGANLSRLQSAINNVSNTIENNSAARSRIRDTDYAQETANLTRQQILQQAGTAMLAQANS 570
Cdd:COG1344  158 TAALGALDAALDNVSSARAELGARQNRLESAINNLSDLSENLTAALSRLEDADMAEAITRLTKLQTLLQAALAALAQANQ 237

                         90
                 ....*....|
gi 654999239 571 LPqlALSLLR 580
Cdd:COG1344  238 LS--LLDLLR 245
Flagellin_C pfam00700
Bacterial flagellin C-terminal helical region; Flagellins polymerize to form bacterial ...
 494-579 2.35e-21

Bacterial flagellin C-terminal helical region; Flagellins polymerize to form bacterial flagella. There is some similarity between this family and pfam00669, particularly the motif NRFXSXIXXL. It has been suggested that these two regions associate and this is shown to be correct as structurally this family forms an extended helix that interacts with pfam00700.


Pssm-ID: 425827 [Multi-domain]  Cd Length: 86  Bit Score: 88.54  E-value: 2.35e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239  494 IAHADEALDYINGERAKAGANLSRLQSAINNVSNTIENNSAARSRIRDTDYAQETANLTRQQILQQAGTAMLAQANSLPQ 573
Cdd:pfam00700   1 LDLIDEAITDLDSVRADLGAVQNRLESATTNLNNQQDNLKAAISRIEDVDPAEESTRMTKLQIQIQASYSLLSQANQLPQ 80


                  ....*.
gi 654999239  574 LALSLL 579
Cdd:pfam00700  81 SLLNLL 86
Peptidase_M9 pfam01752
Collagenase; This family of enzymes break down collagens.
 255-333 5.29e-05

Collagenase; This family of enzymes break down collagens.


Pssm-ID: 426409  Cd Length: 285  Bit Score: 45.42  E-value: 5.29e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239  255 HEMVHAVMGR--------TMNFAPmDTWFKEGMAEFIHGAdERLFADTSGGTSTA---VALS--YKTNPASGSA-VYSGG 320
Cdd:pfam01752 164 HEYTHYLDGRfdmygdfyAGTSGP-TVWWIEGLAEYFSYS-TRTKSYQAAIDEARtgrYSLStlFHTTYDSDDDrIYRWG 241

                          90
                  ....*....|...
gi 654999239  321 YLAVRYMHQQIKA 333
Cdd:pfam01752 242 YLAVRYMLERHPA 254
 
Name Accession Description Interval E-value
flagella_HExxH NF033876
flagellinolysin; Flagellinolysin is a variant form of bacterial flagellin in with the normally ...
 110-510 2.43e-145

flagellinolysin; Flagellinolysin is a variant form of bacterial flagellin in with the normally hypervariable central region contains an M9 (MEROPS classification) family metalloprotease domain, with its signature HExxH motif. The founding member of the family, from the pathogen Clostridium haemolyticum, shows EDTA-sensitive metalloprotease activity. The large count of flagellin subunits in a complete flagellum means the capacity of flagellinolysin to perform as a protease may have implications for host-pathogen relationships.


Pssm-ID: 468217  Cd Length: 380  Bit Score: 424.76  E-value: 2.43e-145
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239 110 LQAEANQLLQSLSTQAQNAEFNGQKIFAQSESSLGGDAARRGIIDGLKMGWLEEAETRITNLLGITADGVDLNIVFEPPA 189
Cdd:NF033876   1 LQKEINQLKQEIDRIAETTEFNGKKLFDQGASVGSADPDKQAILDGLKSGWLENAEDLIKEYYGLTADGADLTVNLEYTD 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239 190 GSGlsnvaggaaAAVGSTTGTADANGKTLNMFLWIDPEDFKPPNLPDGGgvamgNGTVYSDRIIAHEMVHAVMGRTMNFA 269
Cdd:NF033876  81 GAG---------GTLAYVSSGSGGGGKGGNLTLTIDMADFSPANLPNGG-----TAPQYLDRTIAHEMVHAVMGRTMNFS 146

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239 270 PMDTWFKEGMAEFIHGADERLFADTSGGTSTAVALSY---KTNPASGSAVYSGGYLAVRYMHQQIKAAGGEGIKDIMTYL 346
Cdd:NF033876 147 SLPTWFIEGTAEFIHGADERLAADLAGGTSDAAGVAAlfnGGAWTSTSADYSAGYAAVRYLHDQIKAAGGGGIKDIMQYL 226

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239 347 SKNTGSTLDQALTNASHGAFASFNDFDSKFLAAAATpalFTNLGVNLTNADTGALGGADVDGKAPLSSTDVFKDQGTQFN 426
Cdd:NF033876 227 KANAGSTLDQALAAATGGAFATEADFLADFNANGAA---FIKNYMDLTNADTGAIGGLDADGGPVLTAESVVPDTGSYPG 303

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239 427 KQVLKGFKQVWAAGTtgidvqgaTGLKETTFQVGNGAGQKITVQFGGMSAKNLGLDDIDLVKLPTLAIAHADEALDYING 506
Cdd:NF033876 304 EDPLSGFNVIWPTFS--------GAGTTVQLQVGANAGQTIEISFGDMSAEALGLDDVDVSTDATSAIDIFDKALDYVSN 375


                 ....
gi 654999239 507 ERAK 510
Cdd:NF033876 376 QRAY 379
PRK08869 PRK08869
polar flagellin E;
3-580 1.51e-67

polar flagellin E;


Pssm-ID: 236344 [Multi-domain]  Cd Length: 376  Bit Score: 223.65  E-value: 1.51e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239   3 ITTNVPALNTQRHLAQTGTGLSQVLSRLSSGLRINSAKDDAAGLAISSRMESLIRGDQQAVRNMNDGVSLLQTAEGAMSN 82
Cdd:PRK08869   4 VNTNVSAMTAQRNLNGATSALSQSMERLSSGKRINSAKDDAAGLQISNRLTTQIRGLDVAVRNANDGISIAQTAEGAMNE 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239  83 AADVVQRIRELGVQAANGSLSGSDRQALQAEANQLLQSLSTQAQNAEFNGQKIFAQSESS----LGGDAarrgiidglkm 158
Cdd:PRK08869  84 TTNILQRMRDLSLQSANGSNSASDRQALQEEVTALNDELNRIAETTSFGGTKLLNGSFGTksfqIGANS----------- 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239 159 gwleeAETRITNLLGITADGvdlnivfepPAGSGLSnvagGAAAAVGSTTGTADANGKTLNMflwidpedfkppnlpdgg 238
Cdd:PRK08869 153 -----GEAVSLDLKSMRSDA---------KIMGGVS----YDAEGGADKDWTVGAGNTDLNV------------------ 196

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239 239 gvamgngtvysdriiahemvhavmgrtmnfapmdtwfkegmaefihgaderLFADTSGGTSTavalsyktnpasgsavys 318
Cdd:PRK08869 197 ---------------------------------------------------SFDDKGGETQA------------------ 207

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239 319 ggylavrymhQQIKAAGGEGIKDIMTYLSKNTGstldqaLTNAShgafasfndfdskflaaaatpalftnlgvnltnadt 398
Cdd:PRK08869 208 ----------ITINAKAGDDIEELATYINGQTD------GVGAS------------------------------------ 235

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239 399 galggADVDGKAPLSStdvfkdqgtqfnkqvlkgfkqvwAAGTTGIDVQGATGLketTFQVGNGAGQKITVqfggmsakn 478
Cdd:PRK08869 236 -----VSEDGKLQLFA-----------------------AGQKVSGGVSFSGGL---AAELGLGNATAVTV--------- 275

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239 479 lglDDIDL--VKLPTLAIAHADEALDYINGERAKAGANLSRLQSAINNVSNTIENNSAARSRIRDTDYAQETANLTRQQI 556
Cdd:PRK08869 276 ---DDLDIstVGGAQQAVAVIDAALKYVDSHRADLGAFQNRFTHAINNLQNISENLSASNSRIKDTDFAKETTELTKAQI 352

                        570       580
                 ....*....|....*....|....
gi 654999239 557 LQQAGTAMLAQANSLPQLALSLLR 580
Cdd:PRK08869 353 LQQAGTSILAQAKQAPQSALSLLQ 376
PRK12806 PRK12806
flagellin; Provisional
 3-579 4.40e-57

flagellin; Provisional


Pssm-ID: 183761 [Multi-domain]  Cd Length: 475  Bit Score: 198.76  E-value: 4.40e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239   3 ITTNVPALNTQRHLAQTGTGLSQVLSRLSSGLRINSAKDDAAGLAISSRMESLIRGDQQAVRNMNDGVSLLQTAEGAMSN 82
Cdd:PRK12806   5 INTNVASLTAQRNLGVSGNMMQTSIQRLSSGLRINSAKDDAAGLAISQRMTAQIRGMNQAVRNANDGISLAQVAEGAMQE 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239  83 AADVVQRIRELGVQAANGSLSGSDRQALQAEANQLLQSLSTQAQNAEFNGQKIFaqsESSLGGDAARRGIidglkmgwle 162
Cdd:PRK12806  85 TTNILQRMRELSVQAANSTNNSSDRASIQSEISQLKSELERIAQNTEFNGQRIL---DGSFSGASFQVGA---------- 151

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239 163 eaetritnllgitadGVDLNIVFeppagsGLSNVAGGAAAAVGSTTGTADANGKTLNMflwidpedfkppNLPDGGGVAM 242
Cdd:PRK12806 152 ---------------NSNQTINF------SIGSIKASSIGGIATATGTEVAGAAATDI------------TIAIGGGAAT 198

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239 243 G-NGTVYSDRIIAHEmvhavmgrtmnfapmDTWFKEGMAEFIHGaderlfADTSGGTSTAVALSYKTNPASGSAVYSGGY 321
Cdd:PRK12806 199 SiNSSANFTGALNGQ---------------DATSAYAKAAAIND------AGIGGLSVTASTSGTQAVGAIGGTAGDTYN 257

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239 322 LAVrymhqqikaaGGEGIKDIMTYLSKNTGSTLDQALTNASH--GAFASFNDFDSKFLAAAATPALFTNLGVNLT-NADT 398
Cdd:PRK12806 258 LTI----------NGVAIYTNLDVATALTNSDLRDAINGVSNqtGVVASLNGGNMTLTAADGRNITVTESGTGFTaGTDG 327

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239 399 GALGGADVDGKaplsstdvfkdqgtqfnkqvlkgfkqvwAAGTTGIDVQGATGLKETTFQVGNGAgqkitvqfgGMSAKN 478
Cdd:PRK12806 328 LTVTGGAFDGA----------------------------LRGTLSISAVDTIAIGGTVANIGLSA---------NISKDT 370

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239 479 LGLDDIDLVKL--PTLAIAHADEALDYINGERAKAGANLSRLQSAINNVSNTIENNSAARSRIRDTDYAQETANLTRQQI 556
Cdd:PRK12806 371 VGIDSLDVSTAsgAQTAIKRIDAALNSVNSNRANMGALQNRFESTIANLQNVSDNLSAARSRIQDADYAAEMASLTKNQI 450

                        570       580
                 ....*....|....*....|...
gi 654999239 557 LQQAGTAMLAQANSLPQLALSLL 579
Cdd:PRK12806 451 LQQAGTAMLAQANSLPQSVLSLL 473
PRK08026 PRK08026
FliC/FljB family flagellin;
3-581 8.14e-51

FliC/FljB family flagellin;


Pssm-ID: 236140 [Multi-domain]  Cd Length: 529  Bit Score: 183.02  E-value: 8.14e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239   3 ITTNVPALNTQRHLAQTGTGLSQVLSRLSSGLRINSAKDDAAGLAISSRMESLIRGDQQAVRNMNDGVSLLQTAEGAMSN 82
Cdd:PRK08026   5 INTNSLSLITQNNINKNQSALSSSIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQAARNANDGISVAQTTEGALSE 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239  83 AADVVQRIRELGVQAANGSLSGSDRQALQAEANQLLQSL---STQAQnaeFNGQKIFAQSESSlggdAARRGIIDGlkmg 159
Cdd:PRK08026  85 INNNLQRVRELTVQAATGTNSQSDLDSIQDEIKSRLDEIdrvSGQTQ---FNGVNVLAKDGSM----KIQVGANDG---- 153

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239 160 wleeaETRITNLLGITADGVDLNivfeppagsGLS-NVAGGAAAAVGSTTGTADANGKTlnmflwidpedfkppnlpdgg 238
Cdd:PRK08026 154 -----ETITIDLKKIDSDTLGLD---------GFNvNGKGTVANTAATVSDLTAAGATL--------------------- 198

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239 239 gvamgNGTVYSDRIIAhemvHAVMGRTMNFAPMDTWFKEGMAEfihGADERLFADTSGGTSTAVALSYKTNPASGSAvys 318
Cdd:PRK08026 199 -----DTTGLYDVKTK----NAALTTADALAKLGDGDKVTATA---TGGDYTYNAKSGKYQAADLAATLTPDVGGTA--- 263

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239 319 ggylavrymhqqiKAAGGEGIKDIMTYLSKNTGSTLDQALTNASHGAFASFNDFDSkfLAAAATPALFTNLGVNLTNADT 398
Cdd:PRK08026 264 -------------GASYTIKDGTYEVNVDSDGKITLGGSALYIDATGNLTTNNAGA--ATKATLDALKKTASEGAATAKA 328

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239 399 gALGGADVDGKAPLSSTDVfKDQGTQFNKQVLKGFKQVWAAGTTGIDVQGAT----GLKETTFQVGNGAGQKITVQFGGM 474
Cdd:PRK08026 329 -ALAAAGVTVADGVTAKTV-KMSYTDKNGKVIDGGYAVKTGDDYYAADYDEItgaiSATTTYYTAKDGTTKTAANKLGGA 406

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239 475 SAKNLGLDDIDLV------KLPTLAIAHA----------DEALDYINGERAKAGANLSRLQSAINNVSNTIENNSAARSR 538
Cdd:PRK08026 407 DGKTEVVTIDGKTyvasdgKQTTLAEAAAtttenplaalDAAIASIDKFRSSLGAVQNRLDSAVTNLNNTTTNLSEAQSR 486

                        570       580       590       600
                 ....*....|....*....|....*....|....*....|...
gi 654999239 539 IRDTDYAQETANLTRQQILQQAGTAMLAQANSLPQLALSLLRG 581
Cdd:PRK08026 487 IQDADYATEVSNMSKAQIIQQAGNSVLAKANQVPQQVLSLLQG 529
PRK06819 PRK06819
FliC/FljB family flagellin;
3-580 2.10e-49

FliC/FljB family flagellin;


Pssm-ID: 235867 [Multi-domain]  Cd Length: 376  Bit Score: 175.35  E-value: 2.10e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239   3 ITTNVPALNTQRHLAQTGTGLSQVLSRLSSGLRINSAKDDAAGLAISSRMESLIRGDQQAVRNMNDGVSLLQTAEGAMSN 82
Cdd:PRK06819   5 INTNSLSLLTQNNLNKSQSSLGTAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQAARNANDGISIAQTTEGALNE 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239  83 AADVVQRIRELGVQAANGSLSGSDRQALQAEANQLLQSLSTQAQNAEFNGQKIFAqSESSLggdAARRGIIDGlkmgwle 162
Cdd:PRK06819  85 INNNLQRVRELTVQAQNGSNSSSDLDSIQDEISQRLAEIDRVSDQTQFNGVKVLA-EDTTM---SIQVGANDG------- 153

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239 163 eaETRITNLLGItadgvdlnivfeppagsglsnvaggaaaavgsttgtadaNGKTLNMflwidpedfkppnlpdgggvam 242
Cdd:PRK06819 154 --ETIDINLQKI---------------------------------------DSKSLGL---------------------- 170

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239 243 gngtvysdriiahemvhavmgRTMNFApmdtwfkegmaefihgaderlfadtsgGTSTAVALSYKTNPAsgsavysggyl 322
Cdd:PRK06819 171 ---------------------GSFSVS---------------------------GVSGALTSLTFTDTA----------- 191

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239 323 avrymhqqikaaggegikdimtylskntgstLDQALTNASHGAFASFNDFDSKFLAAAATPAlftnlgvNLTNADTGALG 402
Cdd:PRK06819 192 -------------------------------LDTSVTGVTTTTALDFSDISTFAKGATVHGI-------GDVGTDGAYAD 233

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239 403 GADvdgkaplssTDVFKDQGTQFNKQVLKGFkqvwaagTTGIDVQGATGLKETTFQVGNGagqkiTVQFGGMSAKNlgld 482
Cdd:PRK06819 234 GYV---------IRTTDGKQYKGEVDATNGK-------VTFADDANGDPITDATKLEAAA-----QFSPAGKATAS---- 288

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239 483 didlvklptlAIAHADEALDYINGERAKAGANLSRLQSAINNVSNTIENNSAARSRIRDTDYAQETANLTRQQILQQAGT 562
Cdd:PRK06819 289 ----------PLETLDDALKQVDGLRSSLGAVQNRFESTVTNLNNTVTNLSSARSRIEDADYATEVSNMSRAQILQQAGT 358

                        570
                 ....*....|....*...
gi 654999239 563 AMLAQANSLPQLALSLLR 580
Cdd:PRK06819 359 SVLAQANQVPQTVLSLLR 376
FlgL COG1344
Flagellin and related hook-associated protein FlgL [Cell motility];
1-137 6.86e-43

Flagellin and related hook-associated protein FlgL [Cell motility];


Pssm-ID: 440955 [Multi-domain]  Cd Length: 245  Bit Score: 153.87  E-value: 6.86e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239   1 MQITTNVPALNTQRHLAQTGTGLSQVLSRLSSGLRINSAKDDAAGLAISSRMESLIRGDQQAVRNMNDGVSLLQTAEGAM 80
Cdd:COG1344    1 MRISTNMSALNALRNLNRTQSDLAKLQEQLSSGKRINSASDDPAGAAIALRLRSQIRGLEQYQRNANDAISRLQTAEGAL 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 654999239  81 SNAADVVQRIRELGVQAANGSLSGSDRQALQAEANQLLQSLSTQAQNAEFNGQKIFA 137
Cdd:COG1344   81 GEITDILQRARELAVQAANGTLSDEDRAAIAAELEQLLDQLLSIANTTDFNGRYLFA 137
PRK12802 PRK12802
flagellin; Provisional
 1-143 4.08e-36

flagellin; Provisional


Pssm-ID: 139237 [Multi-domain]  Cd Length: 282  Bit Score: 136.55  E-value: 4.08e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239   1 MQITTNVPALNTQRHLAQTGTGLSQVLSRLSSGLRINSAKDDAAGLAISSRMESLIRGDQQAVRNMNDGVSLLQTAEGAM 80
Cdd:PRK12802   3 LTVNTNITSLTVQKNLSRASDALSTSMTRLSSGLKINSAKDDAAGLQIATRQTSQIRGQTQAIKNANDGISIAQTAEGAL 82

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 654999239  81 SNAADVVQRIRELGVQAANGSLSGSDRQALQAEANQLLQSLSTQAQNAEFNGQKIFAQSESSL 143
Cdd:PRK12802  83 QESTNILQRMRELAVQSRNDSNDSTDRAALNKEFTTMLDEITRIATSTTLNGKNLLDGSAGTM 145
Flagellin_N pfam00669
Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial ...
 3-139 4.02e-34

Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial flagella. This family includes flagellins and hook associated protein 3. Structurally this family forms an extended helix that interacts with pfam00700.


Pssm-ID: 425809 [Multi-domain]  Cd Length: 139  Bit Score: 126.30  E-value: 4.02e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239    3 ITTNVPALNTQRHLAQTGTGLSQVLSRLSSGLRINSAKDDAAGLAISSRMESLIRGDQQAVRNMNDGVSLLQTAEGAMSN 82
Cdd:pfam00669   1 INTNSAALAARSNLNKNQAELSKAQERLSTGLRINSALDDAAGLAISVSLRAQIAGLSQAVRNNSLGIGRLQTAQGALSE 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 654999239   83 AADVVQRIRELGVQAANGSLSGSDRQALQAEANQLLQSLSTQAQNAEFNGQKIFAQS 139
Cdd:pfam00669  81 VTDILQRMKELAVQASNGGNSDIDRASIQAEIQQLTDELNNIANTTSFNGEYLLAGI 137
PRK12804 PRK12804
flagellin; Provisional
 1-136 8.51e-30

flagellin; Provisional


Pssm-ID: 183759 [Multi-domain]  Cd Length: 301  Bit Score: 119.33  E-value: 8.51e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239   1 MQITTNVPALNTQRHLAQTGTGLSQVLSRLSSGLRINSAKDDAAGLAISSRMESLIRGDQQAVRNMNDGVSLLQTAEGAM 80
Cdd:PRK12804   1 MRINHNIAALNTLNRLSANNGASQKNMEKLSSGLKINRAGDDAAGLAISEKMRGQIRGLEMASKNAQDGISLIQTAEGAL 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 654999239  81 SNAADVVQRIRELGVQAAN-GSLSGSDRQALQAEANQLLQSLSTQAQNAEFNGQKIF 136
Cdd:PRK12804  81 TETHSILQRVRELVVQAGNtGTQDGTDLGAIQDEIKALVDEIDGISDRTEFNGKKLL 137
PRK12807 PRK12807
flagellin; Provisional
 1-257 1.35e-29

flagellin; Provisional


Pssm-ID: 171737 [Multi-domain]  Cd Length: 287  Bit Score: 118.39  E-value: 1.35e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239   1 MQITTNVPALNTQRHLAQTGTGLSQVLSRLSSGLRINSAKDDAAGLAISSRMESLIRGDQQAVRNMNDGVSLLQTAEGAM 80
Cdd:PRK12807   1 MRINTNINSMRTQEYMRQNQDKMNVSMNRLSSGKRINSAADDAAGLAIATRMRARQSGLEKASQNTQDGMSLIRTAESAM 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239  81 SNAADVVQRIRELGVQAANGSLSGSDRQALQAEANQLLQSLSTQAQNAEFNGQKIFAQSESSLGGDAARRGIIDGLKMGW 160
Cdd:PRK12807  81 NSVSNILTRMRDIAVQSSNGTNTAENQSALQKEFAELQEQIDYIAKNTEFNDKNLLAGTGAVTIGSTSISGAEISIETLD 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239 161 LEEAETRIT-NLLGITADGVDLNIVFEPPAGSGLSNVAGGAAAAVGSTTGTADAN---GKTLNMFlwidpeDFKPPNLPD 236
Cdd:PRK12807 161 SSATNQQITiKLANTTAEKLGIDATTSNISISGAASALAAISALNTALNTVAGNRatlGATLNRL------DRNVENLNN 234

                        250       260
                 ....*....|....*....|.
gi 654999239 237 GGGVAMGNGTVYSDRIIAHEM 257
Cdd:PRK12807 235 QATNMASAASQIEDADMAKEM 255
PRK12808 PRK12808
flagellin; Provisional
 1-580 1.29e-28

flagellin; Provisional


Pssm-ID: 237212 [Multi-domain]  Cd Length: 476  Bit Score: 119.29  E-value: 1.29e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239   1 MQITTNVPALNTQRHLAQTGTGLSQVLSRLSSGLRINSAKDDAAGLAISSRMESLIRGDQQAVRNMNDGVSLLQTAEGAM 80
Cdd:PRK12808   1 MRINTNINSMRTQEYMRQNQAKMSNAMDRLSSGKRINNASDDAAGLAIATRMRARESGLGVAANNTQDGMSLIRTADSAM 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239  81 SNAADVVQRIRELGVQAANGSLSGSDRQALQAEANQLLQSLSTQAQNAEFNGQKIFAQSES----SLGGDAARRGIIDGL 156
Cdd:PRK12808  81 NSVSNILLRMRDIANQSANGTNTDKNQAALQKEFAELQKQITYIADNTQFNDKNLLNSNSSiniqTLDSSDGDKQIGIDL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239 157 KMGWLEeaETRITNL-LGITADGVDLNIVFEPPAGSGLSNVAGGAAAAVGSTTGTADANGKTLNmflwidpedfkppnlp 235
Cdd:PRK12808 161 KSATLE--ALGINDLsIGANTDIEAVSTKIAALDKNTIAKATVEAKAAFDKAKDDTKAEDSNIL---------------- 222

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239 236 dgggvamgngtvysdriiahemvhavmgrtmnfAPMDTWFKEGMAEfihgaderlfADTSGGTSTAVALSYKTNPASGSA 315
Cdd:PRK12808 223 ---------------------------------DAAADGFKDGKAD----------DAAKDVEAIKTALSAFTGAATLEE 259

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239 316 VysggylavrymhQQIKAAGGEGIKDIMTYLSKNTGSTlDQALTNASHGAFASFNDFDSKFLAAAATPALFTNLGVNLTN 395
Cdd:PRK12808 260 A------------EAAKTAFEVAQKDLVDTYTKKAALT-KDAVADLDTAKTTSTRSKAAKDLVAAYDKAKSGAKPNDVAK 326

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239 396 ADTGA-----LGGADVDGKAPLSSTDVfkdqgtqfnkqvlkgfkqvwAAGTTGIDVQGATGLKETTFQVGNgagqkitvq 470
Cdd:PRK12808 327 AYLEAkmayeKDNNAIDGKSKLEAADD--------------------ALEKDAIKTDASKVLVPKLEAAKK--------- 377

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239 471 fGGMSAKNLGLDdidlvklptlAIAHADEALDYINGERAKAGANLSRLQSAINNVSNTIENNSAARSRIRDTDYAQETAN 550
Cdd:PRK12808 378 -ATTNSKADSLD----------AVKAIDEALKTVADNRATLGATLNRLDFNVNNLKSQSSSMASAASQIEDADMAKEMSE 446

                        570       580       590
                 ....*....|....*....|....*....|
gi 654999239 551 LTRQQILQQAGTAMLAQANSLPQLALSLLR 580
Cdd:PRK12808 447 MTKFKILNEAGISMLSQANQTPQMVSKLLQ 476
PRK13589 PRK13589
flagellin A;
2-580 1.03e-27

flagellin A;


Pssm-ID: 172158 [Multi-domain]  Cd Length: 576  Bit Score: 117.44  E-value: 1.03e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239   2 QITTNVPALNTQRHLAQTGTGLSQVLSRLSSGLRINSAKDDAAGLAISSRMESLIRGDQQAVRNMNDGVSLLQTAEGAMS 81
Cdd:PRK13589   4 RINTNIGALNAHANSVVNSRELDKSLSRLSSGLRINSAADDASGMAIADSLRSQAATLGQAINNGNDAIGILQTADKAMD 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239  82 NAADVVQRIRELGVQAANGSLSGSDRQALQAEANQLLQSLSTQAQNAEFNGQKIFAqsesslggdaarrgiidglkmGWL 161
Cdd:PRK13589  84 EQLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLS---------------------GNF 142

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239 162 EEAETRItnllgitadGVDLNIVFEPPAGSGLSNVAGGAAAAVGSTTGTADANGKTLNMFLWIDPEDFKPPNLPDGGGVA 241
Cdd:PRK13589 143 TNQEFQI---------GASSNQTIKATIGATQSSKIGVTRFETGGRSFTSGEVQLTIKNYNGIDDFKFQKVVISTSVGTG 213

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239 242 MGngtvysdrIIAHEM--VHAVMGRTMNFAPMDTwfkeGMAEFIHGADERLFA--------------DTSGGTSTAVALS 305
Cdd:PRK13589 214 LG--------ALAEEInkSADKTGVRATFTVETT----GVAAIKAGTTSQDFAingvtigqvaykdgDGNGALVSAINSV 281

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239 306 YKTNPASGSAVYSGGYLAVRYMHQQIKAAG----GEGIKDIMT------YLSKNTGSTLDQALTNASHGAFASfndfdSK 375
Cdd:PRK13589 282 KDTTGVEASKDANGQLVLTSRDGRGIKIDGniggGAGILANMKenygrlSLVKNDGKDILISGTNLSAIGMGA-----TD 356

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239 376 FLAAAATPALFTNLGVNLTNADTGALGGADVDGK-----------APLSSTDVFKDQGTQFNKQVLKGFKQVWAAGTTGI 444
Cdd:PRK13589 357 MISQASVSLRESKGRIDANIADAMGFNSYKGGGKfvvtggfssvsAFMSSEGSGFSRGSGYSVGSGKNYSVGLSQGIQII 436

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239 445 DVQGATglkETTFQVGNGAGQKI---TVQFGGMSAKNLGLDD----IDLVKLPTLAIAHADEALDYINGERAKAGANLSR 517
Cdd:PRK13589 437 SSASAM---STVYNVSAGSGFSSgsgLSQFATMKTTAAGVKDetagVTTLKGAMAVMDIAETAITNLDQIRADIGSVQNQ 513

                        570       580       590       600       610       620
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 654999239 518 LQSAINNVSNTIENNSAARSRIRDTDYAQETANLTRQQILQQAGTAMLAQANSLPQLALSLLR 580
Cdd:PRK13589 514 LQVTINNITVTQVNVKAAESTIRDVDFAAESANFSKYNILAQSGSYAMSQANAVQQNVLKLLQ 576
PRK12584 PRK12584
flagellin A; Reviewed
 2-579 5.06e-26

flagellin A; Reviewed


Pssm-ID: 237146 [Multi-domain]  Cd Length: 510  Bit Score: 111.92  E-value: 5.06e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239   2 QITTNVPALNTQRHLAQTGTGLSQVLSRLSSGLRINSAKDDAAGLAISSRMESLIRGDQQAVRNMNDGVSLLQTAEGAMS 81
Cdd:PRK12584   4 QVNTNINALNAHVQSALTQNALKTSLEKLSSGLRINKAADDASGMTIADSLRSQASSLGQAIANTNDGMGIIQVADKAMD 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239  82 NAADVVQRIRELGVQAANGSLSGSDRQALQAEANQLLQSLSTQAQNAEFNGQKI----FAQSESSLGGDA-----ARRGI 152
Cdd:PRK12584  84 EQLKILDTIKVKATQAAQDGQTTESRKAIQSDIVRLIQGLDNIGNTTTYNGQALlsgqFTNKEFQVGAYSnqsikASIGS 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239 153 IDGLKMGwleeaETRITNLLGITADGvDLNIVFEPPAGsglSNVAGGAAAAVGSTTGTadangktlnmflwidpedfkpp 232
Cdd:PRK12584 164 TTSDKIG-----QVRIATGALITASG-DISLTFKQVDG---VNDVTLESVKVSSSAGT---------------------- 212

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239 233 nlpdGGGVAMGNGTVYSDRIiahemvhAVMGRTMNFAPMDTWFKEGmaefihgadeRLFADTSGGTSTAVALSYKTNPAS 312
Cdd:PRK12584 213 ----GIGVLAEVINKNSDRT-------GVKAYASVITTSDVAVQSG----------SLSNLTLNGIHIGNIADIKKNDSD 271

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239 313 GSAVysggylavrymhQQIKAAggegikdimtylsknTGSTLDQALTNaSHGAFaSFNDFDSKFLAAAATPALFTNLGVN 392
Cdd:PRK12584 272 GRLV------------AAINAV---------------TSETGVEAYTD-QKGRL-NLRSIDGRGIEIKTDSVSNGPSALT 322

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239 393 LTNADTGALGGADVDGKAPLSSTD-----VFKDQGTQFNKQVLKGFKQVWAAGTTgIDVQGATGLKETTFQVGNGAGQKI 467
Cdd:PRK12584 323 MVNGGQDLTKGSTNYGRLSLTRLDardinVVSASDSQHLGFSAIGFGESQVAETT-VNLRDVTGNFNANVKSASGANYNA 401

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239 468 TVQFGGmsaKNLGlDDIDLVKLPTLAIAHADEALDYINGERAKAGANLSRLQSAINNVSNTIENNSAARSRIRDTDYAQE 547
Cdd:PRK12584 402 VIASGN---QSLG-SGVTTLRGAMVVMDIAESAMKMLDKVRSDLGSVQNQMISTVNNISITQVNVKAAESQIRDVDFAEE 477

                        570       580       590
                 ....*....|....*....|....*....|..
gi 654999239 548 TANLTRQQILQQAGTAMLAQANSLPQLALSLL 579
Cdd:PRK12584 478 SANFNKNNILAQSGSYAMSQANTVQQNILRLL 509
PRK12802 PRK12802
flagellin; Provisional
 456-579 1.39e-25

flagellin; Provisional


Pssm-ID: 139237 [Multi-domain]  Cd Length: 282  Bit Score: 106.50  E-value: 1.39e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239 456 TFQVGNGAGQKITVQFG---GMSAKNLGLDDIDLVKLPTLAIAHA---------DEALDYINGERAKAGANLSRLQSAIN 523
Cdd:PRK12802 146 TFQVGANTGQSNQITFGlsaSFDATGLGVGSGTLITGADSAAAETnaqaaitaiDAALQTINTTRADLGAAQNRLQSTIS 225

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 654999239 524 NVSNTIENNSAARSRIRDTDYAQETANLTRQQILQQAGTAMLAQANSLPQLALSLL 579
Cdd:PRK12802 226 NLQNINENASAARGRVQDTDFAAETAQLTKQQTLQQASTSVLAQANQLPSAVLKLL 281
PRK08411 PRK08411
flagellin; Reviewed
 2-580 1.02e-24

flagellin; Reviewed


Pssm-ID: 236260 [Multi-domain]  Cd Length: 572  Bit Score: 108.54  E-value: 1.02e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239   2 QITTNVPALNTQRHLAQTGTGLSQVLSRLSSGLRINSAKDDAAGLAISSRMESLIRGDQQAVRNMNDGVSLLQTAEGAMS 81
Cdd:PRK08411   4 RINTNVAALNAKANSDLNAKSLDASLSRLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADKAMD 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239  82 NAADVVQRIRELGVQAANGSLSGSDRQALQAEANQLLQSLSTQAQNAEFNGQKIFAqsesslggdaarrgiidglkmGWL 161
Cdd:PRK08411  84 EQLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLS---------------------GNF 142

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239 162 EEAETRItnllgitadGVDLNIVFEPPAGSGLSNVAGGAAAAVGSTTGTADANGKTLNMFLWIDPEDFKPPNLPDGGGVA 241
Cdd:PRK08411 143 TNQEFQI---------GASSNQTVKATIGATQSSKIGVTRFETGARITTSGVVQLTIKNYNGIDDFKFQNVVISTSVGTG 213

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239 242 MGngtVYSDRIiahEMVHAVMGRTMNFAPMDTwfkeGMAEFIHGADERLFA--------------DTSGGTSTAVALSYK 307
Cdd:PRK08411 214 LG---ALAEEI---NKNADKTGVRATFDVETT----GVAAIKAGTTSDDFAingvtigkveykdgDGNGALVAAINSVKD 283

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239 308 TNPASGSAVYSGGYLAVRYMHQQIKAAGGEGIKDIMT----------YLSKNTGSTLDQALTNASHGAFASfndfdSKFL 377
Cdd:PRK08411 284 TTGVEASIDENGKLVLTSRDGRGIKIDGDIGGGSGILanmkenygrlSLVKNDGKDILISGTNLSFAGMGA-----TDMI 358

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239 378 AAAATPALFTNLGVNLTNADTGALGGADVDG--------KAPLSSTDVFKDQGTQFNKQVLKGFKQVWAAGTTGIDVQGA 449
Cdd:PRK08411 359 SQASVSLRESKGQIDANVADAMGFNSYKGGVmiqgfssvSAFMSSEGSGFSQGSGYSVGSGKNYSVGLSSGIQISSASAM 438

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239 450 TGLKETTFQVGNGAGQKITvQFGGMSAKNLGLDD----IDLVKLPTLAIAHADEALDYINGERAKAGANLSRLQSAINNV 525
Cdd:PRK08411 439 STVYVVSAGSGFSSGSNLS-QFAAMKTTAANVKDetagVTTLKGAMAVMDIAETAITNLDQIRADIGSVQNQVTSTINNI 517

                        570       580       590       600       610
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 654999239 526 SNTIENNSAARSRIRDTDYAQETANLTRQQILQQAGTAMLAQANSLPQLALSLLR 580
Cdd:PRK08411 518 TVTQVNVKAAESQIRDVDFAAESANYSKANILAQSGSYAMAQANAVQQNVLRLLQ 572
PRK12805 PRK12805
FliC/FljB family flagellin;
1-141 6.35e-24

FliC/FljB family flagellin;


Pssm-ID: 183760 [Multi-domain]  Cd Length: 287  Bit Score: 101.87  E-value: 6.35e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239   1 MQITTNVPALNTQRHLAQTGTGLSQVLSRLSSGLRINSAKDDAAGLAISSRMESLIRGDQQAVRNMNDGVSLLQTAEGAM 80
Cdd:PRK12805   1 MKVNTNIISLKTQEYLRKNNEGMTQAQERLASGKRINSSLDDAAGLAVVTRMNVKSTGLDAASKNSSMGIDLLQTADSAL 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 654999239  81 SNAADVVQRIRELGVQAANGSLSGSDRQALQAEANQLLQSLSTQAQNAEFNGQKIFAQSES 141
Cdd:PRK12805  81 SSMSSILQRMRQLAVQSSNGSFSDEDRKQYTAEFGSLIKELDHVADTTNYNNIKLLDQTAT 141
PRK13588 PRK13588
flagellin B; Provisional
 2-580 2.89e-23

flagellin B; Provisional


Pssm-ID: 237440 [Multi-domain]  Cd Length: 514  Bit Score: 103.41  E-value: 2.89e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239   2 QITTNVPALNTQRHLAQTGTGLSQVLSRLSSGLRINSAKDDAAGLAISSRMESLIRGDQQAVRNMNDGVSLLQTAEGAMS 81
Cdd:PRK13588   4 RINTNIAALNAHAVGVQNNRDLSSSLEKLSSGLRINKAADDASGMAIADSLRSQSANLGQAIRNANDAIGMVQTADKAMD 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239  82 NAADVVQRIRELGVQAANGSLSGSDRQALQAEANQLLQSLSTQAQNAEFNGQKI----FAQSESSLGGdaarrgiidglk 157
Cdd:PRK13588  84 EQIKILDTIKTKAVQAAQDGQTLESRRALQSDIQRLLEELDNIANTTSFNGQQMlsgsFSNKEFQIGA------------ 151

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239 158 mgwleEAETRITNLLGITADGVDLNIVFEPPAGSGLSNVAGGAAAAVGSTTGTadangktlnmFLWID-PEDFKPPNLPD 236
Cdd:PRK13588 152 -----YSNTTVKASIGATSSDKIGHVRMETSSFSGEGMLASAAAQNLTEVGLN----------FKQVDgVNDYKIETVRI 216

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239 237 GGGVAMGNGTVysdriiahemvhavmgrtmnfapmdtwfkegmAEFIHGaderlFADTSGgtstaVALSYKTNPASGSAV 316
Cdd:PRK13588 217 STSAGTGIGAL--------------------------------SEIINR-----FSDTLG-----VRASYNVMATGGTPV 254

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239 317 YSGgylAVRYMhqqikAAGGEGIKDIMTyLSKNTGstlDQALTNA------SHGAFASFNDFDSKFLAAAATPAlftnLG 390
Cdd:PRK13588 255 QSG---TVREL-----TINGVEIGTVND-VHKNDA---DGRLINAinsvkdRTGVEASLDIQGRINLTSIDGRA----IS 318

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239 391 VNLTNADTGALGGADVDGKAPLSSTDVFKDQGTQFNKQVLKgfkqVWAAGTTGIDVQGATGLKETTFQVGNGAGQ----- 465
Cdd:PRK13588 319 VHAASASGQVFGGGNFAGISGTQHAVVGRLTLTRTDARDII----VSGVNFSHVGFHSAQGVAEYTVNLRAVRGIfdanv 394

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239 466 KITVQFGGMSAKNLGLDDIDLVKLPTLAIAH-----ADEALDYINGERAKAGANLSRLQSAINNVSNTIENNSAARSRIR 540
Cdd:PRK13588 395 ASAAGANANGAQAETNSQGIGAGVTSLKGAMivmdmAESARTQLDKIRSDMGSVQMQLVSTINNISVTQVNVKAAESQIR 474

                        570       580       590       600
                 ....*....|....*....|....*....|....*....|
gi 654999239 541 DTDYAQETANLTRQQILQQAGTAMLAQANSLPQLALSLLR 580
Cdd:PRK13588 475 DVDFAEESANFSKYNILAQSGSFAMAQANAVQQNVLRLLQ 514
PRK12804 PRK12804
flagellin; Provisional
 423-580 4.12e-23

flagellin; Provisional


Pssm-ID: 183759 [Multi-domain]  Cd Length: 301  Bit Score: 100.07  E-value: 4.12e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239 423 TQFN-KQVLKGfkqvwaagtTGIDVQGATGLKETTFQVGNGAGQKITVQFGGMSAKNLGLD-------------DIDLVK 488
Cdd:PRK12804 129 TEFNgKKLLDG---------TFKPAAPAAGTKSLTFQIGANAAQQLSVNIEAMSADALGVKdtdgtlvtgksvsDIDVTK 199

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239 489 LPTLAIAHA----------DEALDYINGERAKAGANLSRLQSAINNVSNTIENNSAARSRIRDTDYAQETANLTRQQILQ 558
Cdd:PRK12804 200 FANAAAAADggfddqlkivDGAIKQVSDQRSKLGAVQNRLEHTINNLGASGENLTAAESRIRDVDMAKEMSEFTKNNILS 279

                        170       180
                 ....*....|....*....|..
gi 654999239 559 QAGTAMLAQANSLPQLALSLLR 580
Cdd:PRK12804 280 QASQAMLAQANQQPQNVLQLLR 301
flagell_flgL TIGR02550
flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated ...
 3-137 4.49e-23

flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated proteins designated FlgL (or HAP3) encoded in bacterial flagellar operons. A N-terminal region of about 150 residues and a C-terminal region of about 85 residues are conserved. Members show considerable length heterogeneity between these two well-conserved terminal regions; the seed alignment 486 columns, 393 of which are represented in the model, while members of this family are from 287 to over 500 residues in length. This model distinguishes FlgL from the flagellin gene product FliC. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274195 [Multi-domain]  Cd Length: 306  Bit Score: 99.73  E-value: 4.49e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239    3 ITTNVPALNTQRHLAQTGTGLSQVLSRLSSGLRINSAKDDAAGLAISSRMESLIRGDQQAVRNMNDGVSLLQTAEGAMSN 82
Cdd:TIGR02550   2 VSTNMLYNNSLNSITNNQSRLAKLQQQLSSGKRINKPSDDPVAAAQALNLNQELAQLEQYQKNIDDAKNWLSQTETALSS 81

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 654999239   83 AADVVQRIRELGVQAANGSLSGSDRQALQAEANQLLQSLSTQAQNAEFNGQKIFA 137
Cdd:TIGR02550  82 VGDVLQRARELAVQAANGTLSDDDRKAIAKEIKQLLDQLVNLANTKDGNGRYIFS 136
PRK12803 PRK12803
flagellin; Provisional
 1-142 1.62e-22

flagellin; Provisional


Pssm-ID: 183758 [Multi-domain]  Cd Length: 335  Bit Score: 99.11  E-value: 1.62e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239   1 MQITTNVPALNTQRHLAQTGTGLSQVLSRLSSGLRINSAKDDAAGLAISSRMESLIRGDQQAVRNMNDGVSLLQTAEGAM 80
Cdd:PRK12803   1 MIINHNTSAINASRNNSINAANLSKTQEKLSSGHRINRASDDAAGMGVAGKINAQIRGLSQASRNTSKAINFIQTTEGNL 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 654999239  81 SNAADVVQRIRELGVQAANGSLSGSDRQALQAEANQLLQSLSTQAQNAEFNGQKIFAQSESS 142
Cdd:PRK12803  81 NEVEKVLVRMKELAVQSGNGTYSDADRGSIQIEIEQLTDEINRIADQAQYNQMHMLSNKSAA 142
FlgL COG1344
Flagellin and related hook-associated protein FlgL [Cell motility];
491-580 2.14e-22

Flagellin and related hook-associated protein FlgL [Cell motility];


Pssm-ID: 440955 [Multi-domain]  Cd Length: 245  Bit Score: 96.47  E-value: 2.14e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239 491 TLAIAHADEALDYINGERAKAGANLSRLQSAINNVSNTIENNSAARSRIRDTDYAQETANLTRQQILQQAGTAMLAQANS 570
Cdd:COG1344  158 TAALGALDAALDNVSSARAELGARQNRLESAINNLSDLSENLTAALSRLEDADMAEAITRLTKLQTLLQAALAALAQANQ 237

                         90
                 ....*....|
gi 654999239 571 LPqlALSLLR 580
Cdd:COG1344  238 LS--LLDLLR 245
Flagellin_C pfam00700
Bacterial flagellin C-terminal helical region; Flagellins polymerize to form bacterial ...
 494-579 2.35e-21

Bacterial flagellin C-terminal helical region; Flagellins polymerize to form bacterial flagella. There is some similarity between this family and pfam00669, particularly the motif NRFXSXIXXL. It has been suggested that these two regions associate and this is shown to be correct as structurally this family forms an extended helix that interacts with pfam00700.


Pssm-ID: 425827 [Multi-domain]  Cd Length: 86  Bit Score: 88.54  E-value: 2.35e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239  494 IAHADEALDYINGERAKAGANLSRLQSAINNVSNTIENNSAARSRIRDTDYAQETANLTRQQILQQAGTAMLAQANSLPQ 573
Cdd:pfam00700   1 LDLIDEAITDLDSVRADLGAVQNRLESATTNLNNQQDNLKAAISRIEDVDPAEESTRMTKLQIQIQASYSLLSQANQLPQ 80


                  ....*.
gi 654999239  574 LALSLL 579
Cdd:pfam00700  81 SLLNLL 86
flgL PRK07701
flagellar hook-associated protein FlgL; Validated
 1-137 7.63e-21

flagellar hook-associated protein FlgL; Validated


Pssm-ID: 181087 [Multi-domain]  Cd Length: 298  Bit Score: 93.13  E-value: 7.63e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239   1 MQITTNVPALNTQRHLAQTGTGLSQVLSRLSSGLRINSAKDDAAGLAISSRMESLIRGDQQAVRNMNDGVSLLQTAEGAM 80
Cdd:PRK07701   1 MRVTQNMLANNFLRNINSNLEKLDKYQEQLSTGKKITRPSDDPVVAMKSLRYRTDLAEVEQYQKNASDAKSWLENTESAL 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 654999239  81 SNAADVVQRIRELGVQAANGSLSGSDRQALQAEANQLLQSLsTQAQNAEFNGQKIFA 137
Cdd:PRK07701  81 DQATDILQRARELAVQAANGTNTQTDRQAIAQEIEQLKEQL-IQIANTQYNGRYIFN 136
PRK06663 PRK06663
flagellar hook-associated protein 3;
1-177 3.05e-20

flagellar hook-associated protein 3;


Pssm-ID: 180648 [Multi-domain]  Cd Length: 419  Bit Score: 93.21  E-value: 3.05e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239   1 MQITTNVPALNTQRHLAQTGTGLSQVLSRLSSGLRINSAKDDAAGLAISSRMESLIRGDQQAVRNMNDGVSLLQTAEGAM 80
Cdd:PRK06663   2 MRVSHPMQYNNLKSSLRRQESKMTKLQNQLSTGQRIQKLRDDPTAATHSIRYKSRLFKLDRYQKNIDDGKDRLRYAEGYL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239  81 SNAADVVQRIRELGVQAANGSLSGSDRQALQAEANQLLQSL--STQAQNAE----FNGQKIFAQ-------SESSLGGDA 147
Cdd:PRK06663  82 QSITNILQRARELAVQGANGTYQADDKKKIAKEIDELLEDLvdIANARGADgysiFSGTKIDTEpfevirgNIKGLQGDA 161

                        170       180       190
                 ....*....|....*....|....*....|
gi 654999239 148 ARRGIIDGLKMGWLEEAETRITNLLGITAD 177
Cdd:PRK06663 162 GSNQIIGVEYNGDIGEQNREIENGIYIPVN 191
flgL PRK08870
flagellar hook-associated protein FlgL; Reviewed
 23-142 9.27e-15

flagellar hook-associated protein FlgL; Reviewed


Pssm-ID: 236345 [Multi-domain]  Cd Length: 404  Bit Score: 76.49  E-value: 9.27e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239  23 LSQVLSRLSSGLRINSAKDDAAG----LAISSRMESLirgdQQAVRNMNDGVSLLQTAEGAMSNAADVVQRIRELGVQAA 98
Cdd:PRK08870  23 LSQLQQQLSSGKKLLTPSDDPVAaaqaVNLSQQSALL----DQYTKNINLARNRLQQEESTLGSVEDLLQRARELVVQAG 98

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 654999239  99 NGSLSGSDRQALQAEANQLLQSLSTQAQNAEFNGQKIFAQSESS 142
Cdd:PRK08870  99 NGSLSDSDRQAIATELQGLRDQLLNLANSKDGSGNYLFAGTQSG 142
PRK12807 PRK12807
flagellin; Provisional
 421-580 6.45e-14

flagellin; Provisional


Pssm-ID: 171737 [Multi-domain]  Cd Length: 287  Bit Score: 72.55  E-value: 6.45e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239 421 QGTQFNKQVLKGfkqVWAAGTTGIDVQGATGLKETTFQVGNgAGQKITVQFGGMSAKNLGLDDIDL---VKLPT---LAI 494
Cdd:PRK12807 126 KNTEFNDKNLLA---GTGAVTIGSTSISGAEISIETLDSSA-TNQQITIKLANTTAEKLGIDATTSnisISGAAsalAAI 201

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239 495 AHADEALDYINGERAKAGANLSRLQSAINNVSNTIENNSAARSRIRDTDYAQETANLTRQQILQQAGTAMLAQANSLPQL 574
Cdd:PRK12807 202 SALNTALNTVAGNRATLGATLNRLDRNVENLNNQATNMASAASQIEDADMAKEMSEMTKFKILNEAGISMLSQANQTPQM 281


                 ....*.
gi 654999239 575 ALSLLR 580
Cdd:PRK12807 282 VSKLLQ 287
flgL PRK12717
flagellar hook-associated protein 3;
1-142 3.16e-11

flagellar hook-associated protein 3;


Pssm-ID: 171679 [Multi-domain]  Cd Length: 523  Bit Score: 65.92  E-value: 3.16e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239   1 MQITT----NVPALNTQRHLAqtgtGLSQVLSRLSSGLRINSAKDDAAGLAissRMesLIRGDQQAV-----RNMNDGVS 71
Cdd:PRK12717   1 MRISTsqfyESSAANYQRNYS----NLVKTQEQASSGIRIQTAADDPVGAA---RL--LQLQQQQAMldqysGNITTIKN 71

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 654999239  72 LLQTAEGAMSNAADVVQRIRELGVQAANGSLSGSDRQALQAEANQLLQSLSTQAQNAEFNGQKIFAQSESS 142
Cdd:PRK12717  72 SLTQEESTLTSINDTLQRARELAVSAGNGGLTDADRKAIASELKQIEAQLLGLMNSKDANGQYLFAGSKSD 142
PRK12805 PRK12805
FliC/FljB family flagellin;
444-579 4.22e-10

FliC/FljB family flagellin;


Pssm-ID: 183760 [Multi-domain]  Cd Length: 287  Bit Score: 61.04  E-value: 4.22e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239 444 IDVQGATGLKETTFQVGNGAgqkitvQFGGMSAknLGLDDIDLVKLPTLAIahaDEALDYINGERAKAGANLSRLQSAIN 523
Cdd:PRK12805 161 IDLFNAKGLSAGTITLGSGS------TVAGYSA--LSVADADSSQEATEAI---DELINNISNGRALLGAGMSRLSYNVS 229

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 654999239 524 NVSNTIENNSAARSRIRDTDYAQETANLTRQQILQQAGTAMLAQANSLPQLALSLL 579
Cdd:PRK12805 230 NVNNQSIATKASASSIEDADMAAEMSEMTKYKILTQTSISMLSQANQTPQMLTQLI 285
PRK12803 PRK12803
flagellin; Provisional
 492-580 1.23e-09

flagellin; Provisional


Pssm-ID: 183758 [Multi-domain]  Cd Length: 335  Bit Score: 60.21  E-value: 1.23e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239 492 LAIAHADEALDYINGERAKAGANLSRLQSAINNVSNTIENNSAARSRIRDTDYAQETANLTRQQILQQAGTAMLAQANSL 571
Cdd:PRK12803 247 MSLAKIENAIRMISDQRANLGAFQNRLESIKASTEYAIENLKASYAQIKDATMTDEVVASTTNSILTQSAMAMIAQANQV 326


                 ....*....
gi 654999239 572 PQLALSLLR 580
Cdd:PRK12803 327 PQYVLSLLR 335
flgL PRK07192
flagellar hook-associated protein FlgL; Reviewed
 1-142 3.23e-08

flagellar hook-associated protein FlgL; Reviewed


Pssm-ID: 235956 [Multi-domain]  Cd Length: 305  Bit Score: 55.41  E-value: 3.23e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239   1 MQITTNVPALNTQRHLAQTGTGLSQVLSRLSSGLRINSAKDD---AAGLAISSRMESLIrgdQQAVRNMNDGVSLLQTAE 77
Cdd:PRK07192   1 MRISTNTLYSTMLRSIQQLQAGLGKLQQQMSTGKRILTPSDDpiaSARLLELSREQSNN---SQYADNIANLSNSLNNQE 77

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 654999239  78 GAMSNAADVVQRIRELGVQAANGSLSGSDRQALQAEANQLLQSL--STQAQNAEfnGQKIFAQSESS 142
Cdd:PRK07192  78 GHLSGVNDQLQSIRSLLVAAGNGSLSDEDRSAMATELRSMLDSLlgLANAKDSE--GNYLFSGTASN 142
PRK14692 PRK14692
flagellar hook-associated protein FlgL;
1-140 4.56e-06

flagellar hook-associated protein FlgL;


Pssm-ID: 173155 [Multi-domain]  Cd Length: 749  Bit Score: 49.57  E-value: 4.56e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239   1 MQITTNVPALNTQRHLAQTGTGLSQVLSRLSSGLRINSAKDDAAGLAISSRMESLIRGDQQAVRNMNDGVSLLQTAEGAM 80
Cdd:PRK14692   1 MRITNKLNFTNSVNNSMGGQSALYQISQQLASGLKIQNSYEDASTYIDNTRLEYEIKTLEQVKESTSRAQEMTQNSMKAL 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239  81 SNAADVVQRIRELGVQAANGSLSGSDRQALQAEANQLLQSLsTQAQNAEFNGQKIFAQSE 140
Cdd:PRK14692  81 QDMVKLLEDFKVKVTQAASDSNSQTSREAIAKELERIKESI-VQLANTSVNGQYLFAGSQ 139
PRK12687 PRK12687
flagellin; Reviewed
 5-149 6.38e-06

flagellin; Reviewed


Pssm-ID: 105853 [Multi-domain]  Cd Length: 311  Bit Score: 48.51  E-value: 6.38e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239   5 TNVPALNTQRHLAQTGTGLSQVLSRLSSGLRINSAKDDAAGLAISSRMesliRGDQQAVRNMNDGVSLLQTAEGAMSNAA 84
Cdd:PRK12687   6 TNTSAMTALQTLRNVSSSLATTQNRISTGYRVATASDNSAYWSIATTM----RSDNEALSAVSDALGLGAATVDTMYTAL 81

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239  85 DVVQRIRELGVQAANGSL-----SGSDRQALQAEANQLLQSLSTQAQNAEFNGQKIFAQSESSLGGDAAR 149
Cdd:PRK12687  82 TSVVGDSKSGLTALKAKLvaarePGIDRTKIQSEITAIQNDLKNTAGLAVFNGENWLSVDSSPSSYNATK 151
Peptidase_M9 pfam01752
Collagenase; This family of enzymes break down collagens.
 255-333 5.29e-05

Collagenase; This family of enzymes break down collagens.


Pssm-ID: 426409  Cd Length: 285  Bit Score: 45.42  E-value: 5.29e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239  255 HEMVHAVMGR--------TMNFAPmDTWFKEGMAEFIHGAdERLFADTSGGTSTA---VALS--YKTNPASGSA-VYSGG 320
Cdd:pfam01752 164 HEYTHYLDGRfdmygdfyAGTSGP-TVWWIEGLAEYFSYS-TRTKSYQAAIDEARtgrYSLStlFHTTYDSDDDrIYRWG 241

                          90
                  ....*....|...
gi 654999239  321 YLAVRYMHQQIKA 333
Cdd:pfam01752 242 YLAVRYMLERHPA 254
flgL PRK08073
flagellar hook-associated protein 3;
1-142 6.92e-05

flagellar hook-associated protein 3;


Pssm-ID: 181222 [Multi-domain]  Cd Length: 287  Bit Score: 44.97  E-value: 6.92e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239   1 MQITTNVPALNTQRHLAQTGTGLSQVLSRLSSGLRINSAKDDAAGLAISSRMESLIRGDQQAVRNMNDGVSLLQTAEGAM 80
Cdd:PRK08073   1 MRVSTFQNANWAKNQLMDLNVQQQYHRNQVTSGKKNLSMSEDPLAASKSFAIQHSLANIEQMQKDVADSKNVLNQTENTL 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 654999239  81 SNAADVVQRIRELGVQAANGSLSGSDRQALQAEANQLLQSLSTQAqNAEFNGQKIFAQSESS 142
Cdd:PRK08073  81 SGMSKSLTRVDQLVLQALNGTNDEKELKAIGAEIDQILKQVVYLA-NTKEQGRYVFGGDSAE 141
flgL PRK12718
flagellar hook-associated protein FlgL; Provisional
 1-152 1.31e-04

flagellar hook-associated protein FlgL; Provisional


Pssm-ID: 79176 [Multi-domain]  Cd Length: 510  Bit Score: 44.80  E-value: 1.31e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239   1 MQITTNVPALNTQRHLAQTGTGLSQVLSRLSSGLRINSAKDD--AAGLAISSRMESLIRGDQQAVRNMNDGV--SLLQTA 76
Cdd:PRK12718   1 MRLSTALIYQNGLNGVLNQEAAMARLQEQLSSGRRVLTPADDplAAALAVNVSQTSSMNSNYDANRKQAEQAlgAQTNTL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239  77 EGAMSNAADVVQRIrelgVQAANGSLSGSDRQALQAEANQLLQSLSTQAQNAEFNGQKIF--------------AQSESS 142
Cdd:PRK12718  81 QSVVKNMQEMLKRV----VEAGNGTMSDADRQALVIALKGAREELVGLANATDGNGQYLFsgykgftqpysfdaATGKVT 156

                        170
                 ....*....|
gi 654999239 143 LGGDAARRGI 152
Cdd:PRK12718 157 YNGDLGQRGI 166
PRK12687 PRK12687
flagellin; Reviewed
 485-580 6.92e-03

flagellin; Reviewed


Pssm-ID: 105853 [Multi-domain]  Cd Length: 311  Bit Score: 38.88  E-value: 6.92e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654999239 485 DLVKLPTLaIAHADEALDYINGERAKAGANLSRLQSAINNVSNTIENNSAARSRIRDTDYAQETANLTRQQILQQAGTAM 564
Cdd:PRK12687 217 DLTKLDGY-IGIVDQALGSVTQASADLGATKTRIDSNSNFVKSLRDAIDRGVGQLVDADMNAESTRLQALQTQQQLGIQA 295

                         90
                 ....*....|....*.
gi 654999239 565 LAQANSLPQLALSLLR 580
Cdd:PRK12687 296 LSIANQGSQSILSLFK 311
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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