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Conserved domains on  [gi|654862079|ref|WP_028314393|]
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prepilin-type N-terminal cleavage/methylation domain-containing protein [Desulfatibacillum aliphaticivorans]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PilE COG4968
Type IV pilus assembly protein PilE [Cell motility, Extracellular structures];
1-123 6.74e-12

Type IV pilus assembly protein PilE [Cell motility, Extracellular structures];


:

Pssm-ID: 443994 [Multi-domain]  Cd Length: 124  Bit Score: 57.78  E-value: 6.74e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654862079   1 MIRLNKRKQQGFTLIELMiviaiigilaaiaiPNFVSYRKKAYNRTAQADLSSAYSTVMAYYADekhkeiNNFTLDNLKD 80
Cdd:COG4968    1 MKKRMRRRQRGFTLIELMivvaiigilaaiaiPSYQDYVERARRAEAKAALLELAQAQERYYAD------NGSYPSALAD 74

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 654862079  81 AGFKQTVGVAITVT-SVNFQDFELTARhGQGDIVYTIDAAGARS 123
Cdd:COG4968   75 LGLPASTSGYYTISiAAAATTYTLTAT-PQADGTLTLDQTGVKT 117
 
Name Accession Description Interval E-value
PilE COG4968
Type IV pilus assembly protein PilE [Cell motility, Extracellular structures];
1-123 6.74e-12

Type IV pilus assembly protein PilE [Cell motility, Extracellular structures];


Pssm-ID: 443994 [Multi-domain]  Cd Length: 124  Bit Score: 57.78  E-value: 6.74e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654862079   1 MIRLNKRKQQGFTLIELMiviaiigilaaiaiPNFVSYRKKAYNRTAQADLSSAYSTVMAYYADekhkeiNNFTLDNLKD 80
Cdd:COG4968    1 MKKRMRRRQRGFTLIELMivvaiigilaaiaiPSYQDYVERARRAEAKAALLELAQAQERYYAD------NGSYPSALAD 74

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 654862079  81 AGFKQTVGVAITVT-SVNFQDFELTARhGQGDIVYTIDAAGARS 123
Cdd:COG4968   75 LGLPASTSGYYTISiAAAATTYTLTAT-PQADGTLTLDQTGVKT 117
N_methyl pfam07963
Prokaryotic N-terminal methylation motif; This short motif directs methylation of the ...
 6-18 6.37e-03

Prokaryotic N-terminal methylation motif; This short motif directs methylation of the conserved phenylalanine residue. It is most often found at the N-terminus of pilins and other proteins involved in secretion, see pfam00114, pfam05946, pfam02501 and pfam07596.


Pssm-ID: 429756 [Multi-domain]  Cd Length: 27  Bit Score: 32.34  E-value: 6.37e-03
                          10
                  ....*....|...
gi 654862079    6 KRKQQGFTLIELM 18
Cdd:pfam07963   1 MRKQRGFTLIELL 13
 
Name Accession Description Interval E-value
PilE COG4968
Type IV pilus assembly protein PilE [Cell motility, Extracellular structures];
1-123 6.74e-12

Type IV pilus assembly protein PilE [Cell motility, Extracellular structures];


Pssm-ID: 443994 [Multi-domain]  Cd Length: 124  Bit Score: 57.78  E-value: 6.74e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654862079   1 MIRLNKRKQQGFTLIELMiviaiigilaaiaiPNFVSYRKKAYNRTAQADLSSAYSTVMAYYADekhkeiNNFTLDNLKD 80
Cdd:COG4968    1 MKKRMRRRQRGFTLIELMivvaiigilaaiaiPSYQDYVERARRAEAKAALLELAQAQERYYAD------NGSYPSALAD 74

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 654862079  81 AGFKQTVGVAITVT-SVNFQDFELTARhGQGDIVYTIDAAGARS 123
Cdd:COG4968   75 LGLPASTSGYYTISiAAAATTYTLTAT-PQADGTLTLDQTGVKT 117
ComGC COG4537
Competence protein ComGC [Mobilome: prophages, transposons];
2-83 8.61e-06

Competence protein ComGC [Mobilome: prophages, transposons];


Pssm-ID: 443603 [Multi-domain]  Cd Length: 108  Bit Score: 41.45  E-value: 8.61e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654862079   2 IRLNKRKQQGFTLIELMIVIAIIGILAAIAIPNFVSYRKKAYNRTAQADLSSAYSTVMAYYADekHKEINNfTLDNLKDA 81
Cdd:COG4537    4 KKRKLKKEKGFTLIEMLIVLLIISILLLIAVPNLTKQRETAQEKGCEANIKMVQSQVELYELD--HGTYPA-SLEELVDE 80


                 ..
gi 654862079  82 GF 83
Cdd:COG4537   81 GY 82
PilA COG4969
Type IV pilus assembly protein, major pilin PilA [Cell motility, Extracellular structures];
6-119 1.33e-03

Type IV pilus assembly protein, major pilin PilA [Cell motility, Extracellular structures];


Pssm-ID: 443995 [Multi-domain]  Cd Length: 134  Bit Score: 36.22  E-value: 1.33e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654862079   6 KRKQQGFTLIELMIVIAIIGILAAIAIPNFVSYRKKAYNRTAQADLSSAYSTVMAYYADEkhkeiNNFTLDNLKDAGFKQ 85
Cdd:COG4969    2 KKKQKGFTLIELMIVVAIIGILAAIAIPAYQDYVARARVSEALALASPLKTAVEECALEN-----GSLPNCNAGDNGLPA 76

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 654862079  86 T--------VGVA---ITVT---SVNFQDFELTARHGQGDIVYTIDAA 119
Cdd:COG4969   77 TiatkyvssVSVDngvITVTgtaALAGLTLTLTPTLNNGAITWTCSCS 124
N_methyl pfam07963
Prokaryotic N-terminal methylation motif; This short motif directs methylation of the ...
 6-18 6.37e-03

Prokaryotic N-terminal methylation motif; This short motif directs methylation of the conserved phenylalanine residue. It is most often found at the N-terminus of pilins and other proteins involved in secretion, see pfam00114, pfam05946, pfam02501 and pfam07596.


Pssm-ID: 429756 [Multi-domain]  Cd Length: 27  Bit Score: 32.34  E-value: 6.37e-03
                          10
                  ....*....|...
gi 654862079    6 KRKQQGFTLIELM 18
Cdd:pfam07963   1 MRKQRGFTLIELL 13
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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