NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|640339574|ref|WP_024869215|]
View 

MULTISPECIES: GlsB/YeaQ/YmgE family stress response membrane protein [Pseudoxanthomonas]

Protein Classification

GlsB/YeaQ/YmgE family stress response membrane protein( domain architecture ID 10006287)

GlsB/YeaQ/YmgE family stress response membrane protein similar to Bacillus subtilis UPF0410 proteins YwzA and YdaS

Gene Ontology:  GO:0016020

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
YeaQ COG2261
Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family ...
 1-82 4.78e-16

Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family [General function prediction only];


:

Pssm-ID: 441862  Cd Length: 85  Bit Score: 65.83  E-value: 4.78e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640339574  1 MGIIIWLIVGGIVGWLASLIMRRDAQQGILLNIIVGIVGAVLAGWIF---GGGINEAITIRTFLFSIVGAVILLAIVNLF 77
Cdd:COG2261   1 MGIIGWIIIGLIAGWLARAIMPGGQGGGLIGTIVLGIVGAFVGGWLGgllGIGLVGGFSLGSLIVAVIGAIILLFIYRLI 80


                ....*
gi 640339574 78 TRGRV 82
Cdd:COG2261  81 RGRRR 85
 
Name Accession Description Interval E-value
YeaQ COG2261
Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family ...
 1-82 4.78e-16

Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family [General function prediction only];


Pssm-ID: 441862  Cd Length: 85  Bit Score: 65.83  E-value: 4.78e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640339574  1 MGIIIWLIVGGIVGWLASLIMRRDAQQGILLNIIVGIVGAVLAGWIF---GGGINEAITIRTFLFSIVGAVILLAIVNLF 77
Cdd:COG2261   1 MGIIGWIIIGLIAGWLARAIMPGGQGGGLIGTIVLGIVGAFVGGWLGgllGIGLVGGFSLGSLIVAVIGAIILLFIYRLI 80


                ....*
gi 640339574 78 TRGRV 82
Cdd:COG2261  81 RGRRR 85
Transgly_assoc pfam04226
Transglycosylase associated protein; Bacterial protein, predicted to be an integral membrane ...
 33-79 8.00e-04

Transglycosylase associated protein; Bacterial protein, predicted to be an integral membrane protein. Some family members have been annotated as transglycosylase associated proteins, but no experimental evidence is provided. This family was annotated based on the information in Swiss:P76011.


Pssm-ID: 461230  Cd Length: 49  Bit Score: 33.95  E-value: 8.00e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 640339574  33 IIVGIVGAVLAGWIFG--GGINEAITIRTFLFSIVGAVILLAIVNLFTR 79
Cdd:pfam04226  1 IILGIVGAFVGGFLFGalGIGVGGGELAGFIPALIGAVILLFIVRLVRR 49
PRK10457 PRK10457
hypothetical protein; Provisional
 1-73 1.28e-03

hypothetical protein; Provisional


Pssm-ID: 182475  Cd Length: 82  Bit Score: 34.01  E-value: 1.28e-03
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 640339574  1 MGIIIWLIVGGIVGWLASLIMRRDAQQGILLNIIVGIVGAVLAGWI---FGGGINEAITIRTFLFSIVGAVILLAI 73
Cdd:PRK10457  1 MGILSWIIFGLIAGILAKWIMPGKDGGGFFMTIILGIVGAVVGGWIstfFGFGKVDGFNFGSFVVAVIGAIVVLFI 76
 
Name Accession Description Interval E-value
YeaQ COG2261
Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family ...
 1-82 4.78e-16

Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family [General function prediction only];


Pssm-ID: 441862  Cd Length: 85  Bit Score: 65.83  E-value: 4.78e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640339574  1 MGIIIWLIVGGIVGWLASLIMRRDAQQGILLNIIVGIVGAVLAGWIF---GGGINEAITIRTFLFSIVGAVILLAIVNLF 77
Cdd:COG2261   1 MGIIGWIIIGLIAGWLARAIMPGGQGGGLIGTIVLGIVGAFVGGWLGgllGIGLVGGFSLGSLIVAVIGAIILLFIYRLI 80


                ....*
gi 640339574 78 TRGRV 82
Cdd:COG2261  81 RGRRR 85
Transgly_assoc pfam04226
Transglycosylase associated protein; Bacterial protein, predicted to be an integral membrane ...
 33-79 8.00e-04

Transglycosylase associated protein; Bacterial protein, predicted to be an integral membrane protein. Some family members have been annotated as transglycosylase associated proteins, but no experimental evidence is provided. This family was annotated based on the information in Swiss:P76011.


Pssm-ID: 461230  Cd Length: 49  Bit Score: 33.95  E-value: 8.00e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 640339574  33 IIVGIVGAVLAGWIFG--GGINEAITIRTFLFSIVGAVILLAIVNLFTR 79
Cdd:pfam04226  1 IILGIVGAFVGGFLFGalGIGVGGGELAGFIPALIGAVILLFIVRLVRR 49
PRK10457 PRK10457
hypothetical protein; Provisional
 1-73 1.28e-03

hypothetical protein; Provisional


Pssm-ID: 182475  Cd Length: 82  Bit Score: 34.01  E-value: 1.28e-03
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 640339574  1 MGIIIWLIVGGIVGWLASLIMRRDAQQGILLNIIVGIVGAVLAGWI---FGGGINEAITIRTFLFSIVGAVILLAI 73
Cdd:PRK10457  1 MGILSWIIFGLIAGILAKWIMPGKDGGGFFMTIILGIVGAVVGGWIstfFGFGKVDGFNFGSFVVAVIGAIVVLFI 76
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH