|
Name |
Accession |
Description |
Interval |
E-value |
| AraH |
COG1172 |
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ... |
10-318 |
2.41e-86 |
|
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440785 Cd Length: 322 Bit Score: 262.73 E-value: 2.41e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556471687 10 REALLALVIILMIGAIGSRAPSFVSPGNLVEMFNDTAILIILALGQMMVLLTKGIDLSMAANLALTGMIVALLNAHYpGI 89
Cdd:COG1172 17 PELGLLLALVLLLVVFSILSPGFLSPGNLSNILRQAAILGILALGMTLVIITGGIDLSVGSVVALSGVVAALLLVAL-GL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556471687 90 PVVALLALATLLGLLMGMINGLLVWRLGIPAIVVTLGTMSIYRGIIFLLTDGGWVNShqMSADFLSLPRSTLMGLPLLSW 169
Cdd:COG1172 96 PILLAILLALLVGALLGLLNGLLVAKLRIPPFIVTLGTMFIARGLALLLTGGRPISG--LPDAFRALGQGSLLGIPVPVL 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556471687 170 CAIAALLLVGYFLRYSRTGRALYTAGGNATAAYYTGINAGKMQFVSFCLSGALAGFCGYLWISRFAVAYVDVANGFELQV 249
Cdd:COG1172 174 IALVVALVAWFLLRRTRFGRYIYAVGGNEEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPNAGSGYELDA 253
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 556471687 250 VAACVIGGISTMGGSGRVLGCLCGALFLGVINNALPVIGISPFWQMAISGAVIVMAVLLNERGNRGHGR 318
Cdd:COG1172 254 IAAVVIGGTSLTGGRGSVLGTLLGALILGVLNNGLNLLGVSSYWQQIVKGAIILLAVLLDRLRRRRRAR 322
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
45-309 |
9.23e-74 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 228.45 E-value: 9.23e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556471687 45 TAILIILALGQMMVLLTKGIDLSMAANLALTGMIVALLNAHyPGIPVVALLALATLLGLLMGMINGLLVWRLGIPAIVVT 124
Cdd:cd06579 1 AAVLGILALGMTLVIITGGIDLSVGSVAALSAVVAALLLVN-AGLPIPLAILAALAVGALIGLLNGLLVAYLRIPPFIVT 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556471687 125 LGTMSIYRGIIFLLTDGGWVNSHQMSADFLsLPRSTLMGLPLLSWCAIAALLLVGYFLRYSRTGRALYTAGGNATAAYYT 204
Cdd:cd06579 80 LGTMFILRGLALLITGGRPISGLPPLFSFF-LGGGLILGIPVPVLIALAVALVAWFLLRRTRFGRYLYAVGGNPEAARLS 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556471687 205 GINAGKMQFVSFCLSGALAGFCGYLWISRFAVAYVDVANGFELQVVAACVIGGISTMGGSGRVLGCLCGALFLGVINNAL 284
Cdd:cd06579 159 GINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLGTLLGALLLGVLNNGL 238
|
250 260
....*....|....*....|....*
gi 556471687 285 PVIGISPFWQMAISGAVIVMAVLLN 309
Cdd:cd06579 239 NLLGVSSFWQQIVKGAILLLAVALD 263
|
|
| rbsC |
PRK09512 |
ribose ABC transporter permease protein; Reviewed |
5-309 |
1.75e-49 |
|
ribose ABC transporter permease protein; Reviewed
Pssm-ID: 181922 [Multi-domain] Cd Length: 320 Bit Score: 167.97 E-value: 1.75e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556471687 5 AWLKHREALLALviILMIGAIGSRAPSFVSPGNLVEMFNDTAILIILALGQMMVLLTKGIDLSMAANLALTGMIVALLNA 84
Cdd:PRK09512 14 AWLIEQKSLIAL--LVLIAIVSTLSPNFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTGAVAASIVG 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556471687 85 HypGIPVVALLALATLLGLLMGMINGLLVWRLGIPAIVVTLGTMSIYRGIIFLLTDGGWVNS-HQMSAD-FLSLPRSTLM 162
Cdd:PRK09512 92 I--EVNALVAVPAALALGAAIGAVTGVIVAKGKVQAFIATLVMMLLLRGVTMVYTDGSPINTgFTDNADlFGWFGIGRPL 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556471687 163 GLPLLSWCAIAALLLVGYFLRYSRTGRALYTAGGNATAAYYTGINAGKMQFVSFCLSGALAGFCGYLWISRFAVAYVDVA 242
Cdd:PRK09512 170 GIPTPVWIMAIVFLAAWYMLHHTRLGRYIYALGGNEAATRLSGINVNKVKIIVYALCGLLAALAGIIEVARLSSAQPTAG 249
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 556471687 243 NGFELQVVAACVIGGISTMGGSGRVLGCLCGALFLGVINNALPVIGISPFWQMAISGAVIVMAVLLN 309
Cdd:PRK09512 250 TGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVLVD 316
|
|
| GguB |
NF040906 |
sugar ABC transporter permease; |
13-306 |
2.81e-28 |
|
sugar ABC transporter permease;
Pssm-ID: 468841 [Multi-domain] Cd Length: 375 Bit Score: 112.55 E-value: 2.81e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556471687 13 LLALVIILMIGAIGSRApSFVSPGNLVEMFNDTAILIILALGQMMVLLTKGIDLSMAANLALTGMIVALLNAHYpGIPVV 92
Cdd:NF040906 8 LIALVAIVVLFQILTGG-ILLRPLNVTNLILQNSYILILAIGMLLVIIAGHIDLSVGSVVAFVGAVAAVLMVNW-GMPWW 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556471687 93 ALLALATLLGLLMGMINGLLVWRLGIPAIVVTLGTMSIYRGIIFLLTDGGWV-----NSHQMSADFL--SLPRSTLMGLP 165
Cdd:NF040906 86 LAVLLCLLVGALIGAWQGFWVAYVGIPAFIVTLAGMLVFRGLTLVVLGGQSIgpfpdGFQKISSGFLpdLFGGTGLHLLT 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556471687 166 LLSWCAIAALLLV------------------------------------------------------------GYFLRYS 185
Cdd:NF040906 166 LLLGVLAAAALVWsqlrgrrrrikyglevepmalfiaklvliaaailfftyllasyrglpnvliilgvlilvySFVTNRT 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556471687 186 RTGRALYTAGGNATAAYYTGINAGKMQFVSFCLSGALAGFCGYLWISRFAVAYVDVANGFELQVVAACVIGGISTMGGSG 265
Cdd:NF040906 246 VIGRHIYAVGGNEKAAKLSGIKTKRVTFLVFVNMGVLAALAGLVFAARLNSATPKAGNGFELDAIAACFIGGASASGGVG 325
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 556471687 266 RVLGCLCGALFLGVINNALPVIGISPFWQMAISGAVIVMAV 306
Cdd:NF040906 326 TVVGAIIGALVMGVLNNGMSILGIGIDWQQVIKGLVLLAAV 366
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
37-306 |
1.57e-19 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 86.54 E-value: 1.57e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556471687 37 NLVEMFNDTAILIILALG-QMMVLLTKGIDLSMAANLALtGMIVALLNAHYPGIPVVALLALATLLGLLMGMINGLLVWR 115
Cdd:pfam02653 1 NILNILTLASIYAIAALGlTLIYGIAGVINLGHGGFMML-GAYVAAMLLNLLGPGLWLALPVGILVGAAVGLLIGILTLR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556471687 116 LGIPAIVVTLGTMSIYRGIIFLLTDG---GWVNSHQMSADFLSLPRSTLMGLPLLSWCAIAALLLVGYFLRYSRTGRALY 192
Cdd:pfam02653 80 LKINEVIITLLLNLAALGLALFLVTGilgGEGGTSGITGPSGFPGAFLSFAFAFIFLLALLLVLALWLLLYRTKFGRALR 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556471687 193 TAGGNATAAYYTGINAGKMQFVSFCLSGALAGFCGYLWISRFAVAYV-DVANGFELQVVAACVIGGIstmggsGRVLGCL 271
Cdd:pfam02653 160 AVGENEEAARAAGINVKKLKLLTFVISGALAGLAGALLALYTGVVPPsNFGVGLGLDAIAAVVLGGA------GSPIGVV 233
|
250 260 270
....*....|....*....|....*....|....*.
gi 556471687 272 CGALFLGVINN-ALPVIGISPFWQMAISGAVIVMAV 306
Cdd:pfam02653 234 IGSLIIGLVQSlGLGALGSPPELSLLVLGALLILVL 269
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| AraH |
COG1172 |
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ... |
10-318 |
2.41e-86 |
|
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440785 Cd Length: 322 Bit Score: 262.73 E-value: 2.41e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556471687 10 REALLALVIILMIGAIGSRAPSFVSPGNLVEMFNDTAILIILALGQMMVLLTKGIDLSMAANLALTGMIVALLNAHYpGI 89
Cdd:COG1172 17 PELGLLLALVLLLVVFSILSPGFLSPGNLSNILRQAAILGILALGMTLVIITGGIDLSVGSVVALSGVVAALLLVAL-GL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556471687 90 PVVALLALATLLGLLMGMINGLLVWRLGIPAIVVTLGTMSIYRGIIFLLTDGGWVNShqMSADFLSLPRSTLMGLPLLSW 169
Cdd:COG1172 96 PILLAILLALLVGALLGLLNGLLVAKLRIPPFIVTLGTMFIARGLALLLTGGRPISG--LPDAFRALGQGSLLGIPVPVL 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556471687 170 CAIAALLLVGYFLRYSRTGRALYTAGGNATAAYYTGINAGKMQFVSFCLSGALAGFCGYLWISRFAVAYVDVANGFELQV 249
Cdd:COG1172 174 IALVVALVAWFLLRRTRFGRYIYAVGGNEEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPNAGSGYELDA 253
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 556471687 250 VAACVIGGISTMGGSGRVLGCLCGALFLGVINNALPVIGISPFWQMAISGAVIVMAVLLNERGNRGHGR 318
Cdd:COG1172 254 IAAVVIGGTSLTGGRGSVLGTLLGALILGVLNNGLNLLGVSSYWQQIVKGAIILLAVLLDRLRRRRRAR 322
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
45-309 |
9.23e-74 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 228.45 E-value: 9.23e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556471687 45 TAILIILALGQMMVLLTKGIDLSMAANLALTGMIVALLNAHyPGIPVVALLALATLLGLLMGMINGLLVWRLGIPAIVVT 124
Cdd:cd06579 1 AAVLGILALGMTLVIITGGIDLSVGSVAALSAVVAALLLVN-AGLPIPLAILAALAVGALIGLLNGLLVAYLRIPPFIVT 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556471687 125 LGTMSIYRGIIFLLTDGGWVNSHQMSADFLsLPRSTLMGLPLLSWCAIAALLLVGYFLRYSRTGRALYTAGGNATAAYYT 204
Cdd:cd06579 80 LGTMFILRGLALLITGGRPISGLPPLFSFF-LGGGLILGIPVPVLIALAVALVAWFLLRRTRFGRYLYAVGGNPEAARLS 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556471687 205 GINAGKMQFVSFCLSGALAGFCGYLWISRFAVAYVDVANGFELQVVAACVIGGISTMGGSGRVLGCLCGALFLGVINNAL 284
Cdd:cd06579 159 GINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLGTLLGALLLGVLNNGL 238
|
250 260
....*....|....*....|....*
gi 556471687 285 PVIGISPFWQMAISGAVIVMAVLLN 309
Cdd:cd06579 239 NLLGVSSFWQQIVKGAILLLAVALD 263
|
|
| rbsC |
PRK09512 |
ribose ABC transporter permease protein; Reviewed |
5-309 |
1.75e-49 |
|
ribose ABC transporter permease protein; Reviewed
Pssm-ID: 181922 [Multi-domain] Cd Length: 320 Bit Score: 167.97 E-value: 1.75e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556471687 5 AWLKHREALLALviILMIGAIGSRAPSFVSPGNLVEMFNDTAILIILALGQMMVLLTKGIDLSMAANLALTGMIVALLNA 84
Cdd:PRK09512 14 AWLIEQKSLIAL--LVLIAIVSTLSPNFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTGAVAASIVG 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556471687 85 HypGIPVVALLALATLLGLLMGMINGLLVWRLGIPAIVVTLGTMSIYRGIIFLLTDGGWVNS-HQMSAD-FLSLPRSTLM 162
Cdd:PRK09512 92 I--EVNALVAVPAALALGAAIGAVTGVIVAKGKVQAFIATLVMMLLLRGVTMVYTDGSPINTgFTDNADlFGWFGIGRPL 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556471687 163 GLPLLSWCAIAALLLVGYFLRYSRTGRALYTAGGNATAAYYTGINAGKMQFVSFCLSGALAGFCGYLWISRFAVAYVDVA 242
Cdd:PRK09512 170 GIPTPVWIMAIVFLAAWYMLHHTRLGRYIYALGGNEAATRLSGINVNKVKIIVYALCGLLAALAGIIEVARLSSAQPTAG 249
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 556471687 243 NGFELQVVAACVIGGISTMGGSGRVLGCLCGALFLGVINNALPVIGISPFWQMAISGAVIVMAVLLN 309
Cdd:PRK09512 250 TGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVLVD 316
|
|
| XylH |
COG4214 |
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism]; |
12-306 |
1.45e-46 |
|
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 443360 [Multi-domain] Cd Length: 393 Bit Score: 162.21 E-value: 1.45e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556471687 12 ALLALVIILMIGAIGSRaPSFVSPGNLVEMFNDTAILIILALGQMMVLLTKGIDLSMAANLALTGMIVALLNAHYpGIPV 91
Cdd:COG4214 27 MIIALVVIWIVFQILTG-GTFLTPRNLSNLLLQNSYIGILAIGMVLVILLGHIDLSVGSVSGFVGAVAAVLMVNW-GLPW 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556471687 92 VALLALATLLGLLMGMINGLLVWRLGIPAIVVTLGTMSIYRGIIFLLTDGGWVNS-----HQMSADFLS--LPRSTL--- 161
Cdd:COG4214 105 WLAILAALLVGALIGAWQGFWVAYVGIPSFIVTLAGMLAFRGLTLLVLGGGTIAPfdptfQAIGNGFLPdiLGTLSWvlg 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556471687 162 ---------------------------MGLPLLSWCAIAALLLV-------------------------GYFLRYSRTGR 189
Cdd:COG4214 185 avavaayvalqlrsrrrrrryglpvepLWLFVLKLALLAVLILGavyllnsyrgipivvlillvlvvvyTFVLTRTVFGR 264
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556471687 190 ALYTAGGNATAAYYTGINAGKMQFVSFCLSGALAGFCGYLWISRFAVAYVDVANGFELQVVAACVIGGISTMGGSGRVLG 269
Cdd:COG4214 265 HIYAVGGNPEAARLSGINVRRVTFSVFVNMGVLAALAGIVFAARLNSATPSAGTGFELDAIAAAVIGGTSLFGGVGTVYG 344
|
330 340 350
....*....|....*....|....*....|....*..
gi 556471687 270 CLCGALFLGVINNALPVIGISPFWQMAISGAVIVMAV 306
Cdd:COG4214 345 AVIGALVMGSLNNGMSLLGVDSDWQQIVKGLVLLLAV 381
|
|
| PRK09699 |
PRK09699 |
D-allose ABC transporter permease; |
6-309 |
1.85e-46 |
|
D-allose ABC transporter permease;
Pssm-ID: 182035 [Multi-domain] Cd Length: 312 Bit Score: 159.55 E-value: 1.85e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556471687 6 WLKHREALLALVIILMIGAIGSRApsFVSPGNLVEMFNDTAILIILALGQMMVLLTKGIDLSMAANLALTGMIVALLnaH 85
Cdd:PRK09699 9 WDKYGTFFILAIIVAIFGSLSPEY--FLTTNNITQIFVQSSVTVLIGMGEFFAILVAGIDLSVGAILALSGMVTAKL--M 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556471687 86 YPGI-PVVALLALATLLGLLMGMINGLLVWRLGIPAIVVTLGTMSIYRGIIFLLTDGGWVnsHQMSADFLSLPRSTLMGL 164
Cdd:PRK09699 85 LAGVdPFLAALIGGVLVGGALGAINGCLVNWTGLHPFIITLGTNAIFRGITLVISDANSV--YGFSFDFVNFFAASVIGI 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556471687 165 PLLSWCAIAALLLVGYFLRYSRTGRALYTAGGNATAAYYTGINAGKMQFVSFCLSGALAGFCGYLWISRFAVAYVDVANG 244
Cdd:PRK09699 163 PVPVIFSLIVALILWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTARLGAAEPLAGMG 242
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 556471687 245 FELQVVAACVIGGISTMGGSGRVLGCLCGALFLGVINNALPVIGISPFWQMAISGAVIVMAVLLN 309
Cdd:PRK09699 243 FETYAIASAIIGGTSFFGGKGRIFSVVIGGLIIGTINNGLNILQVQTYYQLVVMGGLIIAAVALD 307
|
|
| PRK15432 |
PRK15432 |
autoinducer 2 ABC transporter permease LsrC; Provisional |
7-311 |
1.34e-43 |
|
autoinducer 2 ABC transporter permease LsrC; Provisional
Pssm-ID: 185330 [Multi-domain] Cd Length: 344 Bit Score: 152.96 E-value: 1.34e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556471687 7 LKHREALLALVIILMIGAIGSRAPSFVSPGNLVEMFNDTAILIILALGQMMVLLTKGIDLSMAANLALTGMIVA-LLNAH 85
Cdd:PRK15432 6 QNNRELTALLAIVLLFVLLGFLDRQYLSLQTLTMVFSSAQILILLAIGATLVMLTRNIDVSVGSITGLCAVLVGmLLNAG 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556471687 86 YpGIPVVALLALATLLGLlmGMINGLLVWRLGIPAIVVTLGTMSIYRGIIFLLTDGGWVNShqMSADFLSLPRSTLMGLP 165
Cdd:PRK15432 86 Y-SLPVACLATLLLGLLA--GFFNGVLVAWLRIPAIVATLGTLGLYRGIMLLWTGGKWIEG--LPAELKQLSAPILLGIS 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556471687 166 LLSWCAIAALLLVGYFLRYSRTGRALYTAGGNATAAYYTGINAGKMQFVSFCLSGALAGFCGYLWISRFAVAYVDVANGF 245
Cdd:PRK15432 161 PIGWLTLILILAMAWLLAKTAFGRSFYATGDNLQGARQLGVRTEAIRIVAFSLNGCMAALAGIVFASQIGFIPNQTGTGL 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 556471687 246 ELQVVAACVIGGISTMGGSGRVLGCLCGALFLGVINNALPVIGISPFWQMAISGAVIVMAVLLNER 311
Cdd:PRK15432 241 EMKAIAACVLGGISLLGGSGTIIGAVLGAYFLTQIDSVLVLLRIPAWWNDFIAGLVLLGVLVFDGR 306
|
|
| mglC |
PRK09478 |
galactose/methyl galactoside ABC transporter permease MglC; |
6-311 |
4.80e-41 |
|
galactose/methyl galactoside ABC transporter permease MglC;
Pssm-ID: 181892 [Multi-domain] Cd Length: 336 Bit Score: 145.99 E-value: 4.80e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556471687 6 WLKHREALLALVIILMIgaIGSRAPSFVSPGNLVEMFNDTAILIILALGQMMVLLTKGIDLSMAANLALTGMIVA-LLNA 84
Cdd:PRK09478 12 YLKEGGIYVVLLVLLAI--IIIQDPTFLSLLNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAAVVAAtLLQS 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556471687 85 ---------HYPGIPVVALLALATLLGLLMGMINGLLVWRLGIPAIVVTLGTMSIYRGIIFLLTDG-GWVNSHQMSADFL 154
Cdd:PRK09478 90 mdnankvfpELATMPIALVILIVCAIGAVIGLINGLIIAYLNVTPFIATLGTMIIVYGINSLYYDFvGASPISGFDSGFS 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556471687 155 SLPRSTL----MGLPLLSWCAIAALLLVGYFLRYSRTGRALYTAGGNATAAYYTGINAGKMQFVSFCLSGALAGFCGYLW 230
Cdd:PRK09478 170 TFAQGFValgsFRLSYITFYALIAVAFVWVLWNKTRFGKNIFAIGGNPEAAKVSGVNVPLNLLMIYALSGVFYAFGGMLE 249
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556471687 231 ISRFAVAYVDVANGFELQVVAACVIGGISTMGGSGRVLGCLCGALFLGVINNALPVIGISPFWQMAISGAVIVMAVLLNE 310
Cdd:PRK09478 250 AGRIGSATNNLGFMYELDAIAACVVGGVSFSGGVGTVIGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGAIIIFAVALDS 329
|
.
gi 556471687 311 R 311
Cdd:PRK09478 330 L 330
|
|
| araH |
PRK11285 |
L-arabinose transporter permease protein; Provisional |
30-315 |
2.12e-37 |
|
L-arabinose transporter permease protein; Provisional
Pssm-ID: 183076 [Multi-domain] Cd Length: 333 Bit Score: 136.35 E-value: 2.12e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556471687 30 PSFVSPGNLVEMFNDTAILIILALGQMMVLLTKGIDLSMAANLALTGMIVA-LLNAHYPgipVVALLALATLLGLLMGMI 108
Cdd:PRK11285 48 PNFASFINMKGLGLAISMIGMVACTMLFCLASGDFDLSVASVVAFAGVVTAvVINATES---LWLGVAAGLLLGAAVGLV 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556471687 109 NGLLVWRLGIPAIVVTLGTMSIYRGIIFLLTDGGWVNSHQMSadFLSLPRSTLMGLPLLSWCAIAALLLVGYFLRYSRTG 188
Cdd:PRK11285 125 NGFVIARLKINALITTLATMQIVRGLAYIISDGKAVGISDER--FFALGYANFFGVPAPIWLTVACFVVFGFLLNKTTFG 202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556471687 189 RALYTAGGNATAAYYTGINAGKMQFVSFCLSGALAGFCGYLWISRFAVAYVDVANGFELQVVAACVIGGISTMGGSGRVL 268
Cdd:PRK11285 203 RNTLAIGGNEEAARLAGVPVVRTKIIIFVLQGLVSALAGVILASRMTSGQPMTSIGFELIVISACVLGGVSLKGGIAKIS 282
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 556471687 269 GCLCGALFLGVINNALPVIGISPFWQMAISGAVIVMAVLLNERGNRG 315
Cdd:PRK11285 283 GVVAGVLILGTVENAMNLLNISPFYQYVVRGLILLAAVLFDRYKQRA 329
|
|
| GguB |
NF040906 |
sugar ABC transporter permease; |
13-306 |
2.81e-28 |
|
sugar ABC transporter permease;
Pssm-ID: 468841 [Multi-domain] Cd Length: 375 Bit Score: 112.55 E-value: 2.81e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556471687 13 LLALVIILMIGAIGSRApSFVSPGNLVEMFNDTAILIILALGQMMVLLTKGIDLSMAANLALTGMIVALLNAHYpGIPVV 92
Cdd:NF040906 8 LIALVAIVVLFQILTGG-ILLRPLNVTNLILQNSYILILAIGMLLVIIAGHIDLSVGSVVAFVGAVAAVLMVNW-GMPWW 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556471687 93 ALLALATLLGLLMGMINGLLVWRLGIPAIVVTLGTMSIYRGIIFLLTDGGWV-----NSHQMSADFL--SLPRSTLMGLP 165
Cdd:NF040906 86 LAVLLCLLVGALIGAWQGFWVAYVGIPAFIVTLAGMLVFRGLTLVVLGGQSIgpfpdGFQKISSGFLpdLFGGTGLHLLT 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556471687 166 LLSWCAIAALLLV------------------------------------------------------------GYFLRYS 185
Cdd:NF040906 166 LLLGVLAAAALVWsqlrgrrrrikyglevepmalfiaklvliaaailfftyllasyrglpnvliilgvlilvySFVTNRT 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556471687 186 RTGRALYTAGGNATAAYYTGINAGKMQFVSFCLSGALAGFCGYLWISRFAVAYVDVANGFELQVVAACVIGGISTMGGSG 265
Cdd:NF040906 246 VIGRHIYAVGGNEKAAKLSGIKTKRVTFLVFVNMGVLAALAGLVFAARLNSATPKAGNGFELDAIAACFIGGASASGGVG 325
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 556471687 266 RVLGCLCGALFLGVINNALPVIGISPFWQMAISGAVIVMAV 306
Cdd:NF040906 326 TVVGAIIGALVMGVLNNGMSILGIGIDWQQVIKGLVLLAAV 366
|
|
| PRK11618 |
PRK11618 |
inner membrane ABC transporter permease protein YjfF; Provisional |
15-280 |
2.41e-26 |
|
inner membrane ABC transporter permease protein YjfF; Provisional
Pssm-ID: 183235 [Multi-domain] Cd Length: 317 Bit Score: 106.19 E-value: 2.41e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556471687 15 ALVIILMIGAIGSRAPSFVSPGNLVEMFNDTAILIILALGQMMVLLTKGIDLSMAANLALTGMIVALLNAHYpGIPVVAL 94
Cdd:PRK11618 12 IGVFVLGYLFCLVQFPGFASTRVICNLLTDNAFLGIVAVGMTFVILSGGIDLSVGSVIAFTGVFLAKLIGDY-GWSPLLA 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556471687 95 LALATLLGLLMGMINGLLVWRLGIPAIVVTLGTMSIYRGIIFLLTDGGWVNSHQMSADFLSLpRSTLMGLPLLSWCAIAA 174
Cdd:PRK11618 91 FPLVLVMGAAFGAFMGALIHYLKLPAFIVTLAGMFLARGVSFLVSEESIPINHPFYDTLSSL-AWKLPGGGRLSAMALIM 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556471687 175 LLLVG---YFLRYSRTGRALYTAGGNATAAYYTGINAGKMQFVSFCLSGALAGFCGYLWISRFAVAYVDVANGFELQVVA 251
Cdd:PRK11618 170 LAVVAigiFLAHRTRFGNNVYAIGGNATSANLMGIPVRRTTIRIYMLSGFLATLAGIVFSLYTSAGYALAAVGVELDAIA 249
|
250 260
....*....|....*....|....*....
gi 556471687 252 ACVIGGISTMGGSGRVLGCLCGALFLGVI 280
Cdd:PRK11618 250 AVVIGGTLLTGGVGTVLGTLFGVLIQGLI 278
|
|
| PRK15038 |
PRK15038 |
autoinducer 2 ABC transporter permease LsrD; |
11-307 |
2.65e-20 |
|
autoinducer 2 ABC transporter permease LsrD;
Pssm-ID: 184998 Cd Length: 330 Bit Score: 89.89 E-value: 2.65e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556471687 11 EALLALVIILMIGAIGSRAPSFVSPGNLVEMFNDTAILIILALGQMMVLLTKGIDLSMAANLALTGMIVALLNAhyPGIP 90
Cdd:PRK15038 8 ELALAALLVIEILAFGLINPRMLDINVLLFSTSDFICIGIVALPLTMVIVSGGIDISFGSTIGLCAIALGVLFQ--SGVP 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556471687 91 VVALLALATLLGLLMGMINGLLVWRLGIPAIVVTLGTMSIYRGIIFLLTD----GGWVNSHQMSADFLSLPRSTLMGLPL 166
Cdd:PRK15038 86 MPLAILLTLLLGALCGLINAGLIIYTGVNPLVITLGTLYLFGGSALLLSGmagaTGYEGIGGFPMAFTDFANLDVLGLPV 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556471687 167 LSWCAIAALLLVGYFLRYSRTGRALYTAGGNATAAYYTGINAGKMQFVSFCLSGALAGFCGYLWISRFAVAYVDVANGFE 246
Cdd:PRK15038 166 PLIIFLICLLVFWLLMHRTHAGRNVFLIGQSPRVALYSAIPVNRTLCALYAMTGLASAIAAVLLVSYFGSARSDLGASFL 245
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 556471687 247 LQVVAACVIGGISTMGGSGRVLGCLCGALFLGVINNALPVIGISPFWQMAISGAVIVMAVL 307
Cdd:PRK15038 246 MPAITAVVLGGANIYGGSGSIIGTALAVLLVGYLQQGLQMAGVPNQISSALSGALLIVVVV 306
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
37-306 |
1.57e-19 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 86.54 E-value: 1.57e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556471687 37 NLVEMFNDTAILIILALG-QMMVLLTKGIDLSMAANLALtGMIVALLNAHYPGIPVVALLALATLLGLLMGMINGLLVWR 115
Cdd:pfam02653 1 NILNILTLASIYAIAALGlTLIYGIAGVINLGHGGFMML-GAYVAAMLLNLLGPGLWLALPVGILVGAAVGLLIGILTLR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556471687 116 LGIPAIVVTLGTMSIYRGIIFLLTDG---GWVNSHQMSADFLSLPRSTLMGLPLLSWCAIAALLLVGYFLRYSRTGRALY 192
Cdd:pfam02653 80 LKINEVIITLLLNLAALGLALFLVTGilgGEGGTSGITGPSGFPGAFLSFAFAFIFLLALLLVLALWLLLYRTKFGRALR 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556471687 193 TAGGNATAAYYTGINAGKMQFVSFCLSGALAGFCGYLWISRFAVAYV-DVANGFELQVVAACVIGGIstmggsGRVLGCL 271
Cdd:pfam02653 160 AVGENEEAARAAGINVKKLKLLTFVISGALAGLAGALLALYTGVVPPsNFGVGLGLDAIAAVVLGGA------GSPIGVV 233
|
250 260 270
....*....|....*....|....*....|....*.
gi 556471687 272 CGALFLGVINN-ALPVIGISPFWQMAISGAVIVMAV 306
Cdd:pfam02653 234 IGSLIIGLVQSlGLGALGSPPELSLLVLGALLILVL 269
|
|
| TM_PBP1_branched-chain-AA_like |
cd06574 |
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette ... |
47-306 |
3.40e-17 |
|
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which are involved in the uptake of branched-chain amino acids (AAs), as well as TMs of transporters involved in the uptake of monosaccharides including ribose, galactose, and arabinose. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. This group includes Escherichia coli LivM and LivH, two TMs which heterodimerize to form the translocation pathway of the E. coli branched-chain AA LIV-1/LS transporter. This transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) and LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine. Included in this group are proteins from transport systems that contain a single TM which homodimerizes to generate the transmembrane pore; for example E. coli RbsC, AlsC, and MglC, the TMs of the high affinity ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also to be involved in low affinity ribose transport.
Pssm-ID: 119320 [Multi-domain] Cd Length: 266 Bit Score: 80.01 E-value: 3.40e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556471687 47 ILIILALGQMMVLLTKGIDLSMAANLALTGMIVALLNAHYPGIPVVALLALATLLGLLmGMINGLLVWRLGIPAIVVTLG 126
Cdd:cd06574 3 IYAILALGVYIVFRILGFPDLTVDGSFPLGAAVAAILIVAGYNPWLALIAAILAGAAA-GLVTGFLHTRLKINGLLAGIL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556471687 127 TMSIYRGIIFLLTDGGWVNSHQMSADFLSLPRSTLMG---LPLLSWCAIAALLLVGYFLRYSRTGRALYTAGGNATAAYY 203
Cdd:cd06574 82 IMIGLYSINLRIMGGPNIPLGTRDTLLGLLLLFGISGtlsIPVVLLLIVLLVLFLVIWFLRTKLGLAMRATGDNPDMARS 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556471687 204 TGINAGKMQFVSFCLSGALAGFCGYLWISRFAVAYVDVANGFELQVVAACVIGGIST--MGGSGRVLGCLCGALFLGVIN 281
Cdd:cd06574 162 LGINVDRTRILGLVISNALAALGGALYAQYQGFADVNMGIGTGVIGLAAVIIGGAIVgrRTIKASILGVIIGAILYRIAL 241
|
250 260
....*....|....*....|....*
gi 556471687 282 NALPVIGISPFWQMAISGAVIVMAV 306
Cdd:cd06574 242 ALALGSGLIPSDLKLITAGVIVLVL 266
|
|
| LivM |
COG4177 |
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport ... |
38-322 |
8.00e-13 |
|
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 443336 [Multi-domain] Cd Length: 285 Bit Score: 67.80 E-value: 8.00e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556471687 38 LVEMFNDTAILIILALGQMMVL-LTKGIDLSMAANLALTGMIVALLNAHYpGIPVVALLALATLLGLLMGMINGLLVWRL 116
Cdd:COG4177 4 YLSLLTLILIYAILALGLNLLLgYTGLLSLGHAAFFGIGAYAAALLTTHL-GLPFWLALLLAGLVAALLGLLIGLPALRL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556471687 117 -GIPAIVVTLGTMSIYRGIIFLLTD--GGwvnshqmSADFLSLPRSTLMGLPL--------LSWCAIAALLLVGYFLRYS 185
Cdd:COG4177 83 rGDYLAIATLAFAEIVRLLALNLESltGG-------ADGLSGIPRPTLFGLDLgsplafyyLVLALLVLVLLLLRRLVRS 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556471687 186 RTGRALYTAGGNATAAYYTGINAGKMQFVSFCLSGALAGFCGYLWISRFAVAYVDVANGFE-LQVVAACVIGGIstmggs 264
Cdd:COG4177 156 RFGRALRAIRENEIAAEALGINVTRYKLLAFVLSAALAGLAGALYAHYVGFVSPESFSFLLsIEILLMVVLGGL------ 229
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 556471687 265 GRVLGCLCGALFLGVINNALPVIgisPFWQMAISGAVIVMAVLLNERGNRGHGRLILR 322
Cdd:COG4177 230 GSLLGPVLGAVLLVLLPELLRSL---PEYRLLIFGLLLILVVLFRPRGLAGLLRRLRR 284
|
|
| TM_PBP1_LivM_like |
cd06581 |
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two ... |
46-312 |
3.64e-11 |
|
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivM forms a heterodimer with another TM, LivH, to generate the transmembrane pore. LivH is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119323 [Multi-domain] Cd Length: 268 Bit Score: 62.46 E-value: 3.64e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556471687 46 AILIILALGQMMVLLTKG-IDLSMAANLALTGMIVALLnAHYPGIPVVALLALATLLGLLMGMINGLLVWRL-GIPAIVV 123
Cdd:cd06581 2 LIYAILALGLNLLLGYAGqLSLGHAAFFGIGAYTAALL-ATRLGLPFWLALLAAGLVAALVGLLLGLPALRLrGVYFAIA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556471687 124 TLGTMSIYRGIIFLLTD-----GGWVNSHQMSADFLSLPRSTLMGLPLLSWCAIAALLLvgYFLRYSRTGRALYTAGGNA 198
Cdd:cd06581 81 TLAFAEIVRLLALNWSSltggsNGLSGIPPPLLGGLLLSSPLAFYYLVLAVLLLVLLLL--RRLVRSPFGRALRAIRENE 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556471687 199 TAAYYTGINAGKMQFVSFCLSGALAGFCGYLWISRFAVAYVDVAN-GFELQVVAACVIGGIstmggsGRVLGCLCGALFL 277
Cdd:cd06581 159 VAAEALGINVTRYKLLAFALSAALAGLAGALYAHYLGFVSPESFGfALSIELLLMVVLGGL------GSLLGPVLGAALL 232
|
250 260 270
....*....|....*....|....*....|....*
gi 556471687 278 GVINNALpvIGISPFWQMAISGAVIVMAVLLNERG 312
Cdd:cd06581 233 VLLPELL--RSLGPGLRLLVFGLLLILVVLFLPRG 265
|
|
| TM_PBP1_LivH_like |
cd06582 |
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two ... |
46-308 |
7.56e-11 |
|
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivH forms a heterodimer with another TM, LivM, to generate the transmembrane pore. LivM is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119324 [Multi-domain] Cd Length: 272 Bit Score: 61.68 E-value: 7.56e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556471687 46 AILIILALGQMMVLLTKGIdLSMA-ANLALTGMIVALLNAHYPGIPVVALLALATLLGLLMGMINGLLVWRL-----GIP 119
Cdd:cd06582 6 AIYALIALGLTLIFGVTGV-INFAhGEFYMLGAYVAYTLLVALGLPFWLALLLALLVAALLGVLLERLVLRPlrgapLLT 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556471687 120 AIVVTLGTMSIYRGIIFLLTDGGWVNSHQMSADFLSLPRSTLMGLPLLSWC-AIAALLLVGYFLRYSRTGRALYTAGGNA 198
Cdd:cd06582 85 LLITFGGLLILLQGLLLIFGGDPRVPPPPLLSGSVELGGVTIPPYRLFIIAvALVLLAALYLFLRRTRLGRAIRAVAQNP 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556471687 199 TAAYYTGINAGKMQFVSFCLSGALAGFCGYLWISRFAVaYVDVANGFELQVVAACVIGGIstmggsGRVLGCLCGALFLG 278
Cdd:cd06582 165 EAARLLGINVRRVFALTFALGAALAGLAGVLLAPITGV-SPTMGLLLLLKAFAAVVLGGL------GSIPGAVVGGLLLG 237
|
250 260 270
....*....|....*....|....*....|
gi 556471687 279 VINNALPVIgISPFWQMAISgAVIVMAVLL 308
Cdd:cd06582 238 LAESLAAAY-LSSGYKDAVA-FVLLILVLL 265
|
|
| LivH |
COG0559 |
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport ... |
170-308 |
7.46e-10 |
|
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 440325 [Multi-domain] Cd Length: 290 Bit Score: 58.92 E-value: 7.46e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556471687 170 CAIAALLLVGYFLRYSRTGRALYTAGGNATAAYYTGINAGKMQFVSFCLSGALAGFCGYLWISRFAVAYvDVANGFELQV 249
Cdd:COG0559 146 VALVLLAALWLFLRRTRLGLAMRAVAQNREAARLMGINVDRVIALTFALGAALAGLAGVLLAPIYSVSP-TMGFLLGLKA 224
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 556471687 250 VAACVIGGIstmggsGRVLGCLCGALFLGVINNALPVIgISPFWQMAISGAVIVmAVLL 308
Cdd:COG0559 225 FAAVVLGGL------GSIPGAVVGGLLLGLAESLGAAY-LPSGYKDVVAFVLLI-LVLL 275
|
|
| TM_PBP1_transp_TpRbsC_like |
cd06580 |
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. ... |
73-308 |
1.90e-09 |
|
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. This is a functionally uncharacterized subgroup of TMs which belong to a larger group of TMs of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters, which are mainly involved in the uptake of branched-chain amino acids (AAs) or in the uptake of monosaccharides including ribose, galactose, and arabinose, and which generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction.
Pssm-ID: 119322 [Multi-domain] Cd Length: 234 Bit Score: 57.06 E-value: 1.90e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556471687 73 ALTGMIVALLNAHYPGIPVVALLALATLLGLLMGMINGLLVWRLGIPAIVVTLGTMSIYRGIIFLLTdggwvnshqmsad 152
Cdd:cd06580 32 AFAAALVALYLGLPATGSLPLGLLAAALAGALWALLPALLKAKLGVNEVISGLMLNYIALGLTSYLL------------- 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556471687 153 flslprstlmglpllsWCAIAALLLVGYFLRYSRTGRALYTAGGNATAAYYTGINAGKMQFVSFCLSGALAGFCG-YLWI 231
Cdd:cd06580 99 ----------------LLALLLVILVWLLLYRTRFGLRLRAVGENPRAARYAGINVKRVRLLAMLISGALAGLAGaYLVL 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 556471687 232 SRFAVAYVDVANGFELQVVAACVIGGistmggsGRVLGCLCGALFLGVINNALPVIGISPFWQMAISGAVIVMAVLL 308
Cdd:cd06580 163 GVQGRFTEGMSAGYGFIAIAVALLGR-------WNPLGILLAALLFGALEAGGIALQRSGGVPSELVQVLPGIIVLF 232
|
|
| NupP |
COG4603 |
ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and ... |
171-227 |
6.66e-08 |
|
ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and metabolism];
Pssm-ID: 443653 [Multi-domain] Cd Length: 356 Bit Score: 53.59 E-value: 6.66e-08
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 556471687 171 AIAALLLVGYFLRYSRTGRALYTAGGNATAAYYTGINAGKMQFVSFCLSGALAGFCG 227
Cdd:COG4603 203 ALLAAVLVWVLLNRTTLGYELRAVGLNPRAARYAGINVKRLIVLAMLISGALAGLAG 259
|
|
| NupQ |
COG1079 |
ABC-type guanosine uptake system NupNOPQ, permease subunit NupQ [Nucleotide transport and ... |
161-296 |
4.08e-05 |
|
ABC-type guanosine uptake system NupNOPQ, permease subunit NupQ [Nucleotide transport and metabolism];
Pssm-ID: 440697 [Multi-domain] Cd Length: 309 Bit Score: 44.68 E-value: 4.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556471687 161 LMGLPLLSWCAIAALLLVGYFLRYSRTGRALYTAGGNATAAYYTGINAGKMQFVSFCLSGALAGFCG-YLWISRFAVAYV 239
Cdd:COG1079 144 LFGQSPLVYLALLLVPLVWWVLYRTRFGLRLRAVGENPAAADALGINVYRIRYLAVLIGGALAGLGGaYLSLGYVGSFTE 223
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 556471687 240 DVANGFELQVVAACVIggistmgGSGRVLGCLCGALFLGVIN---NALPVIGI---SPFWQMA 296
Cdd:COG1079 224 GMTAGRGFIALAAVIF-------GRWRPLGALLAALLFGFADalqLRLQALGIgipSQLLLML 279
|
|
| PRK10740 |
PRK10740 |
high-affinity branched-chain amino acid ABC transporter permease LivH; |
159-315 |
4.34e-04 |
|
high-affinity branched-chain amino acid ABC transporter permease LivH;
Pssm-ID: 182689 [Multi-domain] Cd Length: 308 Bit Score: 41.45 E-value: 4.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 556471687 159 STLMGLPLLSW-CAIAALLLVGYFLRYSRTGRALYTAGGNATAAYYTGINAGKMQFVSFCLSGALAGFCGYLWISRFAVA 237
Cdd:PRK10740 151 ASITTMQAVIWiVTFLAMLALTIFIRYSRMGRACRACAEDLKMASLLGINTDRVIALTFVIGAAMAAVAGVLLGQFYGVI 230
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 556471687 238 YVDVANGFELQVVAACVIGGIstmggsGRVLGCLCGALFLGvINNALPVIGISPFWQMAISGAVIVMAVLLNERGNRG 315
Cdd:PRK10740 231 NPYIGFMAGMKAFTAAVLGGI------GSIPGAMIGGLILG-IAEALSSAYLSTEYKDVVSFALLILVLLVMPTGILG 301
|
|
| |
