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Conserved domains on  [gi|505741080|ref|WP_015702712|]
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pilus assembly protein PilP [Pasteurella multocida]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PilP super family cl19831
Pilus assembly protein, PilP; The PilP family are periplasmic proteins involved in the ...
 46-101 8.66e-04

Pilus assembly protein, PilP; The PilP family are periplasmic proteins involved in the biogenesis of type IV pili.


The actual alignment was detected with superfamily member COG3168:

Pssm-ID: 473218  Cd Length: 171  Bit Score: 36.80  E-value: 8.66e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 505741080  46 QYPLSALKLIGVLQQNNAWQAFFMDDKAQIEMVTVGQFLTAEALKVKQISQFGVEL 101
Cdd:COG3168   93 AYPLDSLKMVGTLGKGGGLWALIRAPDGSVYRVKVGNYLGQNFGRITAITEDEIEL 148
 
Name Accession Description Interval E-value
PilP COG3168
Type IV pilus assembly protein PilP [Cell motility, Extracellular structures];
46-101 8.66e-04

Type IV pilus assembly protein PilP [Cell motility, Extracellular structures];


Pssm-ID: 442401  Cd Length: 171  Bit Score: 36.80  E-value: 8.66e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 505741080  46 QYPLSALKLIGVLQQNNAWQAFFMDDKAQIEMVTVGQFLTAEALKVKQISQFGVEL 101
Cdd:COG3168   93 AYPLDSLKMVGTLGKGGGLWALIRAPDGSVYRVKVGNYLGQNFGRITAITEDEIEL 148
PilP pfam04351
Pilus assembly protein, PilP; The PilP family are periplasmic proteins involved in the ...
 46-84 2.76e-03

Pilus assembly protein, PilP; The PilP family are periplasmic proteins involved in the biogenesis of type IV pili.


Pssm-ID: 427886  Cd Length: 146  Bit Score: 35.21  E-value: 2.76e-03
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 505741080   46 QYPLSALKLIGVLQQNNAWQAFFMDDKAQIEMVTVGQFL 84
Cdd:pfam04351  71 AYPLDSLRMVGTLKKGGQLWALVRTPDGLVYRVKVGNYL 109
 
Name Accession Description Interval E-value
PilP COG3168
Type IV pilus assembly protein PilP [Cell motility, Extracellular structures];
46-101 8.66e-04

Type IV pilus assembly protein PilP [Cell motility, Extracellular structures];


Pssm-ID: 442401  Cd Length: 171  Bit Score: 36.80  E-value: 8.66e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 505741080  46 QYPLSALKLIGVLQQNNAWQAFFMDDKAQIEMVTVGQFLTAEALKVKQISQFGVEL 101
Cdd:COG3168   93 AYPLDSLKMVGTLGKGGGLWALIRAPDGSVYRVKVGNYLGQNFGRITAITEDEIEL 148
PilP pfam04351
Pilus assembly protein, PilP; The PilP family are periplasmic proteins involved in the ...
 46-84 2.76e-03

Pilus assembly protein, PilP; The PilP family are periplasmic proteins involved in the biogenesis of type IV pili.


Pssm-ID: 427886  Cd Length: 146  Bit Score: 35.21  E-value: 2.76e-03
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 505741080   46 QYPLSALKLIGVLQQNNAWQAFFMDDKAQIEMVTVGQFL 84
Cdd:pfam04351  71 AYPLDSLRMVGTLKKGGQLWALVRTPDGLVYRVKVGNYL 109
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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