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Conserved domains on  [gi|504804338|ref|WP_014991440|]
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ABC transporter permease [Actinobacillus suis]

Protein Classification

ABC transporter permease( domain architecture ID 10790725)

ABC transporter permease is the transmembrane subunit (TM) found in a periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporter involved in the import of iron and iron-containing compounds

Gene Ontology:  GO:0043190|GO:0140359|GO:0042626|GO:0016020|GO:0006826
PubMed:  25750732|24638992|18535149|17723295
TCDB:  3.A.1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CeuB COG4606
ABC-type enterochelin transport system, permease component [Inorganic ion transport and ...
 22-317 1.39e-149

ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism];


:

Pssm-ID: 443656  Cd Length: 318  Bit Score: 422.61  E-value: 1.39e-149
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504804338  22 VGVADFHWSALLS-DPEQTQLFFISRLPRTLAIILVGATLSVAGMVLQIVLKNRFIEPSMIGASQSAALGVLAISLIFPA 100
Cdd:COG4606   21 IGVSDVSLSDLLSlDPEALQILLISRLPRTLAILLAGASLSVAGLIMQQLTRNRFVEPTTAGTMESAKLGILVALLLFPG 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504804338 101 APLVAKMSFATCCALIGMGIFMLLLRNLPPHQKLMVPLIGIVFGNIIEAITTFIAYETDSLQLLSIWFSGDFSGVLAGRY 180
Cdd:COG4606  101 ASLLGKMLVAFVFALAGTLLFLAILRRIPFKDALLVPLVGLMLGGVISAITTFFAYRFDLLQSLSSWLQGDFSGVLRGRY 180

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504804338 181 ELLWLTAALSIVIYIMADQLSITGLGHNISTSLGINYRRMTWLALITVALITAVVVVTIGQIPFIGLVVPNIVSRLAGDR 260
Cdd:COG4606  181 ELLWLSAPLAVLAYLYADRFTIAGMGEDFATNLGLNYRRVVNLGLVIVALITAVVVVTVGSIPFLGLIVPNIVSLYMGDN 260

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 504804338 261 LRKNLPAVVLLGANLVLVCDIIGRVINAPYEVPISTIFGICGTVVFLYLLFRGKRHA 317
Cdd:COG4606  261 LRRTLPWVALLGAGFVLACDILGRLIIYPYEIPIGTVVGVVGSAIFLYLLLRRRRRA 317
 
Name Accession Description Interval E-value
CeuB COG4606
ABC-type enterochelin transport system, permease component [Inorganic ion transport and ...
 22-317 1.39e-149

ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 443656  Cd Length: 318  Bit Score: 422.61  E-value: 1.39e-149
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504804338  22 VGVADFHWSALLS-DPEQTQLFFISRLPRTLAIILVGATLSVAGMVLQIVLKNRFIEPSMIGASQSAALGVLAISLIFPA 100
Cdd:COG4606   21 IGVSDVSLSDLLSlDPEALQILLISRLPRTLAILLAGASLSVAGLIMQQLTRNRFVEPTTAGTMESAKLGILVALLLFPG 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504804338 101 APLVAKMSFATCCALIGMGIFMLLLRNLPPHQKLMVPLIGIVFGNIIEAITTFIAYETDSLQLLSIWFSGDFSGVLAGRY 180
Cdd:COG4606  101 ASLLGKMLVAFVFALAGTLLFLAILRRIPFKDALLVPLVGLMLGGVISAITTFFAYRFDLLQSLSSWLQGDFSGVLRGRY 180

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504804338 181 ELLWLTAALSIVIYIMADQLSITGLGHNISTSLGINYRRMTWLALITVALITAVVVVTIGQIPFIGLVVPNIVSRLAGDR 260
Cdd:COG4606  181 ELLWLSAPLAVLAYLYADRFTIAGMGEDFATNLGLNYRRVVNLGLVIVALITAVVVVTVGSIPFLGLIVPNIVSLYMGDN 260

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 504804338 261 LRKNLPAVVLLGANLVLVCDIIGRVINAPYEVPISTIFGICGTVVFLYLLFRGKRHA 317
Cdd:COG4606  261 LRRTLPWVALLGAGFVLACDILGRLIIYPYEIPIGTVVGVVGSAIFLYLLLRRRRRA 317
FecCD pfam01032
FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport ...
 29-312 5.61e-55

FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.


Pssm-ID: 426003  Cd Length: 311  Bit Score: 181.19  E-value: 5.61e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504804338   29 WSALLSDPEQTQLFFI--SRLPRTLAIILVGATLSVAGMVLQIVLKNRFIEPSMIGASQSAALGVLAISLIFPAAPLVAK 106
Cdd:pfam01032  23 FSALLGGDDSLAALIVldLRLPRVLAALLVGAALAVSGALLQTVTRNPLADPSILGISSGAALGAVLAILLGGSLSLFAL 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504804338  107 MSFATCCALIGMGIFMLLLRNLPPHQKLMVPLIGIVFGNIIEAITTFIAY--ETDSLQLLSIWFSGDFSGVLAGR-YELL 183
Cdd:pfam01032 103 PLAAFIGALLAALLVYFLSRGRGGASPLRLILAGIAVSALLSALTSLLLLllNPEALQSILFWLMGSLSGANWSDvLILL 182

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504804338  184 WLTAALSIVIYIMADQLSITGLGHNISTSLGINYRRMTWLALITVALITAVVVVTIGQIPFIGLVVPNIVSRLAGDRLRK 263
Cdd:pfam01032 183 PLLLIGLILLLLLARKLNLLSLGDDTAKSLGVNVNRVRLLLLLLASLLTAASVAVVGPIGFVGLIVPHIARLLVGANHRR 262

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*....
gi 504804338  264 NLPAVVLLGANLVLVCDIIGRVINAPYEVPISTIFGICGTVVFLYLLFR 312
Cdd:pfam01032 263 LLPLSALLGALLLLLADILARTILSPYELPVGIVTALIGAPFFIYLLLR 311
PRK10577 PRK10577
Fe(3+)-hydroxamate ABC transporter permease FhuB;
23-316 2.32e-36

Fe(3+)-hydroxamate ABC transporter permease FhuB;


Pssm-ID: 236720 [Multi-domain]  Cd Length: 668  Bit Score: 138.05  E-value: 2.32e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504804338  23 GVADFHWSALLSDPEQTQLffisRLPRTLAIILVGATLSVAGMVLQIVLKNRFIEPSMIGASQSAALGVLAISLIFPAAP 102
Cdd:PRK10577 378 DAHGWNWLSGQLLDALLPL----RLPRLLAALLAGAMLAVAGTLLQRLTRNPLASPEVLGISSGAGLGVVLALFLVPGAG 453

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504804338 103 LVAKMSFATCCALIGMGIFMLLLR--NLPPHQKLmvpLIGIVFGNIIEAITTF-IAYETDSLQLLSIWFSGDFSGVLAGR 179
Cdd:PRK10577 454 FGWLLAAALLGALAALALILLLARrgGFAPERLL---LTGIALSALFTALIQLlLASGDPRAAQLLTWLSGSTYGVTWAQ 530

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504804338 180 -YELLWLTAALSIVIYIMADQLSITGLGHNISTSLGINYRRMTWLALITVALITAVVVVTIGQIPFIGLVVPNIVSRLAG 258
Cdd:PRK10577 531 aLPLLIVAVLLLALALLLRRWLDLLPLGDDTARALGLPVTRARLALLLLAALLTAAATATVGPLSFVGLMAPHLARMLGG 610

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 504804338 259 DRLRKNLPAVVLLGANLVLVCDIIGRVINAPYEVPISTIFGICGTVVFLYLLFRGKRH 316
Cdd:PRK10577 611 RRARPQLVLAALLGALLMVLADWLGRTLLFPYQIPAGLLAALIGAPYFLWLLRRSRRR 668
TM_ABC_iron-siderophores_like cd06550
Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 50-310 1.83e-34

Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The TMs are bundles of alpha helices that transverse the cytoplasmic membrane multiple times. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Each TM has a prominent cytoplasmic loop which contacts an ABC and represents a conserved motif. The two TMs form either a homodimer (e.g. in the case of the BtuC subunits of the Escherichia coli BtuCD vitamin B12 transporter), a heterodimer (e.g. the TroC and TroD subunits of the Treponema pallidum general transition metal transporter, TroBCD), or a pseudo-heterodimer (e.g. the FhuB protein of the E. coli ferrichrome transporter, FhuBC). FhuB contains two tandem TMs which associate to form the pseudo-heterodimer. Both FhuB TMs are found in this hierarchy.


Pssm-ID: 119348 [Multi-domain]  Cd Length: 261  Bit Score: 126.13  E-value: 1.83e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504804338  50 TLAIILVGATLSVAGMVLQIVLKNRFIEPSMIGASQSAALGVLAISLIFPAAPLVAKMSFATC-CALIGMGIFMLLLRNL 128
Cdd:cd06550    1 LLAALLVGAALAVSGAILQSLTRNRLASPSILGISHGALLGVVLALLLGIGLSNYALGAFAFAgALAIALLVLLLASRGG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504804338 129 ppHQKLMVPLIGIVFGNIIEAITTFIAY-ETDSLQLLSIWFSGDFSGV-LAGRYELLWLTAALSIVIYIMADQLSITGLG 206
Cdd:cd06550   81 --LSPSKLILIGIVLSAFFSAGVILISLlSDDSLQDLNIWLFGSILGVtWEDLLILLIILLLVLLLLLLLSRKLNLLTFD 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504804338 207 HNISTSLGINYRRMTWLALITVALITAVVVVTIGQIPFIGLVVPNIVSRLAGDRLRKNLPAVVLLGANLVLVCDIIGRVI 286
Cdd:cd06550  159 EDLAKSLGINVNLLRLLLLLLVALLVVAAVALVGVILFVGLIAPHLARRLFGRSHRYLLPLSALLGAILLLLGDLLSRTL 238

                        250       260
                 ....*....|....*....|....
gi 504804338 287 NaPYEVPISTIFGICGTVVFLYLL 310
Cdd:cd06550  239 L-PSELPVGPVTALLGAPYFLYLL 261
 
Name Accession Description Interval E-value
CeuB COG4606
ABC-type enterochelin transport system, permease component [Inorganic ion transport and ...
 22-317 1.39e-149

ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 443656  Cd Length: 318  Bit Score: 422.61  E-value: 1.39e-149
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504804338  22 VGVADFHWSALLS-DPEQTQLFFISRLPRTLAIILVGATLSVAGMVLQIVLKNRFIEPSMIGASQSAALGVLAISLIFPA 100
Cdd:COG4606   21 IGVSDVSLSDLLSlDPEALQILLISRLPRTLAILLAGASLSVAGLIMQQLTRNRFVEPTTAGTMESAKLGILVALLLFPG 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504804338 101 APLVAKMSFATCCALIGMGIFMLLLRNLPPHQKLMVPLIGIVFGNIIEAITTFIAYETDSLQLLSIWFSGDFSGVLAGRY 180
Cdd:COG4606  101 ASLLGKMLVAFVFALAGTLLFLAILRRIPFKDALLVPLVGLMLGGVISAITTFFAYRFDLLQSLSSWLQGDFSGVLRGRY 180

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504804338 181 ELLWLTAALSIVIYIMADQLSITGLGHNISTSLGINYRRMTWLALITVALITAVVVVTIGQIPFIGLVVPNIVSRLAGDR 260
Cdd:COG4606  181 ELLWLSAPLAVLAYLYADRFTIAGMGEDFATNLGLNYRRVVNLGLVIVALITAVVVVTVGSIPFLGLIVPNIVSLYMGDN 260

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 504804338 261 LRKNLPAVVLLGANLVLVCDIIGRVINAPYEVPISTIFGICGTVVFLYLLFRGKRHA 317
Cdd:COG4606  261 LRRTLPWVALLGAGFVLACDILGRLIIYPYEIPIGTVVGVVGSAIFLYLLLRRRRRA 317
FecCD pfam01032
FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport ...
 29-312 5.61e-55

FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.


Pssm-ID: 426003  Cd Length: 311  Bit Score: 181.19  E-value: 5.61e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504804338   29 WSALLSDPEQTQLFFI--SRLPRTLAIILVGATLSVAGMVLQIVLKNRFIEPSMIGASQSAALGVLAISLIFPAAPLVAK 106
Cdd:pfam01032  23 FSALLGGDDSLAALIVldLRLPRVLAALLVGAALAVSGALLQTVTRNPLADPSILGISSGAALGAVLAILLGGSLSLFAL 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504804338  107 MSFATCCALIGMGIFMLLLRNLPPHQKLMVPLIGIVFGNIIEAITTFIAY--ETDSLQLLSIWFSGDFSGVLAGR-YELL 183
Cdd:pfam01032 103 PLAAFIGALLAALLVYFLSRGRGGASPLRLILAGIAVSALLSALTSLLLLllNPEALQSILFWLMGSLSGANWSDvLILL 182

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504804338  184 WLTAALSIVIYIMADQLSITGLGHNISTSLGINYRRMTWLALITVALITAVVVVTIGQIPFIGLVVPNIVSRLAGDRLRK 263
Cdd:pfam01032 183 PLLLIGLILLLLLARKLNLLSLGDDTAKSLGVNVNRVRLLLLLLASLLTAASVAVVGPIGFVGLIVPHIARLLVGANHRR 262

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*....
gi 504804338  264 NLPAVVLLGANLVLVCDIIGRVINAPYEVPISTIFGICGTVVFLYLLFR 312
Cdd:pfam01032 263 LLPLSALLGALLLLLADILARTILSPYELPVGIVTALIGAPFFIYLLLR 311
FepD COG0609
ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and ...
 29-314 3.78e-52

ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440374  Cd Length: 306  Bit Score: 173.72  E-value: 3.78e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504804338  29 WSALLSDPEQTQLFFI---SRLPRTLAIILVGATLSVAGMVLQIVLKNRFIEPSMIGASQSAALGVLAISLIFPAAPLVA 105
Cdd:COG0609   15 LRALLGPDGDPTADLIvwdLRLPRVLLALLVGAALAVAGALMQGLTRNPLADPGILGVSSGAALGAVLAIVLGGGLSALG 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504804338 106 KMSFATCCALIGMGIFMLLLRNLPPHQKLMVPLIGIVFGNIIEAITTFIAYETDSLQLLSI--WFSGDFSGVLAGR-YEL 182
Cdd:COG0609   95 LPLAAFLGALLAALLVYLLARRGGGLSPLRLVLAGVAVSALFSALTSLLLLLADPEQLRSIvfWLMGSLAGASWDDvLLL 174

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504804338 183 LWLTAALSIVIYIMADQLSITGLGHNISTSLGINYRRMTWLALITVALITAVVVVTIGQIPFIGLVVPNIVSRLAGDRLR 262
Cdd:COG0609  175 LPVLLIGLLLALLLARALNALALGDETARSLGVNVERLRLLLLLLAALLTGAAVAVAGPIGFVGLVVPHIARLLVGPDHR 254

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 504804338 263 KNLPAVVLLGANLVLVCDIIGRVINAPYEVPISTIFGICGTVVFLYLLFRGK 314
Cdd:COG0609  255 RLLPASALLGALLLLLADTLARTILAPAELPVGIVTALIGAPFFLYLLRRRR 306
PRK10577 PRK10577
Fe(3+)-hydroxamate ABC transporter permease FhuB;
23-316 2.32e-36

Fe(3+)-hydroxamate ABC transporter permease FhuB;


Pssm-ID: 236720 [Multi-domain]  Cd Length: 668  Bit Score: 138.05  E-value: 2.32e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504804338  23 GVADFHWSALLSDPEQTQLffisRLPRTLAIILVGATLSVAGMVLQIVLKNRFIEPSMIGASQSAALGVLAISLIFPAAP 102
Cdd:PRK10577 378 DAHGWNWLSGQLLDALLPL----RLPRLLAALLAGAMLAVAGTLLQRLTRNPLASPEVLGISSGAGLGVVLALFLVPGAG 453

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504804338 103 LVAKMSFATCCALIGMGIFMLLLR--NLPPHQKLmvpLIGIVFGNIIEAITTF-IAYETDSLQLLSIWFSGDFSGVLAGR 179
Cdd:PRK10577 454 FGWLLAAALLGALAALALILLLARrgGFAPERLL---LTGIALSALFTALIQLlLASGDPRAAQLLTWLSGSTYGVTWAQ 530

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504804338 180 -YELLWLTAALSIVIYIMADQLSITGLGHNISTSLGINYRRMTWLALITVALITAVVVVTIGQIPFIGLVVPNIVSRLAG 258
Cdd:PRK10577 531 aLPLLIVAVLLLALALLLRRWLDLLPLGDDTARALGLPVTRARLALLLLAALLTAAATATVGPLSFVGLMAPHLARMLGG 610

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 504804338 259 DRLRKNLPAVVLLGANLVLVCDIIGRVINAPYEVPISTIFGICGTVVFLYLLFRGKRH 316
Cdd:PRK10577 611 RRARPQLVLAALLGALLMVLADWLGRTLLFPYQIPAGLLAALIGAPYFLWLLRRSRRR 668
TM_ABC_iron-siderophores_like cd06550
Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 50-310 1.83e-34

Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The TMs are bundles of alpha helices that transverse the cytoplasmic membrane multiple times. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Each TM has a prominent cytoplasmic loop which contacts an ABC and represents a conserved motif. The two TMs form either a homodimer (e.g. in the case of the BtuC subunits of the Escherichia coli BtuCD vitamin B12 transporter), a heterodimer (e.g. the TroC and TroD subunits of the Treponema pallidum general transition metal transporter, TroBCD), or a pseudo-heterodimer (e.g. the FhuB protein of the E. coli ferrichrome transporter, FhuBC). FhuB contains two tandem TMs which associate to form the pseudo-heterodimer. Both FhuB TMs are found in this hierarchy.


Pssm-ID: 119348 [Multi-domain]  Cd Length: 261  Bit Score: 126.13  E-value: 1.83e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504804338  50 TLAIILVGATLSVAGMVLQIVLKNRFIEPSMIGASQSAALGVLAISLIFPAAPLVAKMSFATC-CALIGMGIFMLLLRNL 128
Cdd:cd06550    1 LLAALLVGAALAVSGAILQSLTRNRLASPSILGISHGALLGVVLALLLGIGLSNYALGAFAFAgALAIALLVLLLASRGG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504804338 129 ppHQKLMVPLIGIVFGNIIEAITTFIAY-ETDSLQLLSIWFSGDFSGV-LAGRYELLWLTAALSIVIYIMADQLSITGLG 206
Cdd:cd06550   81 --LSPSKLILIGIVLSAFFSAGVILISLlSDDSLQDLNIWLFGSILGVtWEDLLILLIILLLVLLLLLLLSRKLNLLTFD 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504804338 207 HNISTSLGINYRRMTWLALITVALITAVVVVTIGQIPFIGLVVPNIVSRLAGDRLRKNLPAVVLLGANLVLVCDIIGRVI 286
Cdd:cd06550  159 EDLAKSLGINVNLLRLLLLLLVALLVVAAVALVGVILFVGLIAPHLARRLFGRSHRYLLPLSALLGAILLLLGDLLSRTL 238

                        250       260
                 ....*....|....*....|....
gi 504804338 287 NaPYEVPISTIFGICGTVVFLYLL 310
Cdd:cd06550  239 L-PSELPVGPVTALLGAPYFLYLL 261
PRK03784 PRK03784
vtamin B12-transporter permease; Provisional
 46-315 6.46e-33

vtamin B12-transporter permease; Provisional


Pssm-ID: 235159  Cd Length: 331  Bit Score: 123.91  E-value: 6.46e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504804338  46 RLPRTLAIILVGATLSVAGMVLQIVLKNRFIEPSMIGASQSAALGVLAISLIFPAAPLVAKMSFatcCALIGMGIFMLLL 125
Cdd:PRK03784  58 RLPRTLAVLLVGAALAVSGAVMQALFENPLAEPGLLGVSNGAGVALVAAVLLGQGLLPPWALSL---CAIAGALLITLIL 134

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504804338 126 -----RNLPPHQKLMvpLIGIVFGNIIEAITTFIAYETDSLQL--LSIWFSGDFSGVlagRYELLWLTAALSIVIYIMAD 198
Cdd:PRK03784 135 lrfarRHRLSTSRLL--LAGVALGIICSALMTWAVYFSTSLDLrqLMYWMMGGFGGV---DWRQSWLMLALLPVLIWLCC 209

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504804338 199 Q---LSITGLGHNISTSLGINYRRMTWLALITVALITAVVVVTIGQIPFIGLVVPNIVsRLAG-DRLRKNLPAVVLLGAN 274
Cdd:PRK03784 210 QgrpLNMLALGEISARQLGLPLWFWRNLLVLATGWLVGVSVALAGAIGFIGLVIPHIL-RLCGlTDHRVLLPGCALAGAS 288

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|.
gi 504804338 275 LVLVCDIIGRVINAPYEVPISTIFGICGTVVFLYLLFRGKR 315
Cdd:PRK03784 289 LLLLADIVARLALASAELPIGVVTATLGAPVFIWLLLRSHR 329
PRK10577 PRK10577
Fe(3+)-hydroxamate ABC transporter permease FhuB;
29-317 1.16e-29

Fe(3+)-hydroxamate ABC transporter permease FhuB;


Pssm-ID: 236720 [Multi-domain]  Cd Length: 668  Bit Score: 118.79  E-value: 1.16e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504804338  29 WSALLSDPEQTQ----LFFISRLPRTLAIILVGATLSVAGMVLQIVLKNRFIEPSMIGASQSAALGVLAISLIFPAAPLV 104
Cdd:PRK10577  41 WLQALWGPDADDleqlLLHYSRLPRLAIALLVGAALGLAGALLQQVLRNPLASPTTLGVAAGAQLALVLATLFAPALLAL 120

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504804338 105 AKMSFATCCALIGMGIFMLL--LRNLPPhqkLMVPLIGIVFGNIIEAITT-FIAYETDSLQLLSIWFSG-----DFSGVL 176
Cdd:PRK10577 121 ASQLAAFAGGLLAAALVFALagGKRLSP---LRLVLAGMVVSLYLGALTTlLLLFNEQYLQGLFLWGAGslaqnDWSGVQ 197

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504804338 177 AgryeLLWLTAALSIVIYIMADQLSITGLGHNISTSLGINYRRMTWLALITVALITAVVVVTIGQIPFIGLVVPNIVSRL 256
Cdd:PRK10577 198 R----LLPRLLVGLLLLLLLARPLTLLGLGDDVARSLGLAVSLTRLAALALAVLLSAAVVSAVGPIGFIGLAAPNLARLL 273

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 504804338 257 AGDRLRKNLPAVVLLGANLVLVCDIIGRVINAPYEVPIST--IFGICGTVVFLYLLFRGKRHA 317
Cdd:PRK10577 274 GARRLRARLPLSPLIGALLLLLTDQLVRLLAGVGGELLPTgaVTALIGAPLLLWLLPRLRSAQ 336
fecC PRK11228
iron-dicitrate ABC transporter permease FecC;
46-309 5.33e-28

iron-dicitrate ABC transporter permease FecC;


Pssm-ID: 183042  Cd Length: 323  Bit Score: 110.55  E-value: 5.33e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504804338  46 RLPRTLAIILVGATLSVAGMVLQIVLKNRFIEPSMIGASQSAALGvLAISLIFPAAPLVA-KMSFATCCaliGMGIFMLL 124
Cdd:PRK11228  51 RLPRSLVAVLIGASLALAGALLQTLTHNPLASPSLLGINSGAALA-MALTSALSPTPFAGySLAFIAAC---GGGLSWLL 126

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504804338 125 LRNL-----PPHQKLMVPLIGIVFGNIIEAIT--TFIAYETDSLQLLSiWFSGDFSGVLAGRYELLWLTAALSIVIYI-M 196
Cdd:PRK11228 127 VMTAgggwrHTHDRNRLILAGIALSALCMALTriTLLLAEDHAYGIFY-WLAGGVSHARWQEVWQLLPFVVTAVPVVLlL 205

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504804338 197 ADQLSITGLGHNISTSLGINYRRMTWLALITVALITAVVVVTIGQIPFIGLVVPNIVSRLAGDRLRKNLPAVVLLGANLV 276
Cdd:PRK11228 206 ANQLNLLNLSDSSAHTLGVNLTRLRLVVNMLVLLLVGACVSVAGPVAFIGLLVPHLARFWIGYDQRNVLPMSMLLGATLM 285

                        250       260       270
                 ....*....|....*....|....*....|...
gi 504804338 277 LVCDIIGRVINAPYEVPISTIFGICGTVVFLYL 309
Cdd:PRK11228 286 LLADLLARALAFPGELPAGAVLALIGAPCFVWL 318
fecD PRK09777
Fe(3+) dicitrate ABC transporter permease subunit FecD;
23-314 2.10e-26

Fe(3+) dicitrate ABC transporter permease subunit FecD;


Pssm-ID: 182071  Cd Length: 318  Bit Score: 106.28  E-value: 2.10e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504804338  23 GVADFHWSALLSD--PEQTQLFFIS--RLPRTLAIILVGATLSVAGMVLQIVLKNRFIEPSMIGASQSAALGVLAISLIF 98
Cdd:PRK09777  24 GVIPLPWRALLTDwqAGDEHYYVLMeyRLPRLLLALFVGAALAVSGVLVQGIVRNPLASPDILGVNHAASLASVGALLLF 103

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504804338  99 PAAPLVAKMSFAtccaLIGMGIFMLLLRNLP-PHQKLMVPLIGIvfgniieAITTFIAYETDSLQLLS--------IWFS 169
Cdd:PRK09777 104 PSLPVMWLPLLA----FIGGMAGLILLKMLAgTHQPMKLALTGV-------ALSALWASLTDYLMLSRpqdinnalLWLT 172

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504804338 170 GDfsgvLAGR-----YELLWLTAALSIVIYIMADQLSITGLGHNISTSLGINYRRMTWLALITVALITAVVVVTIGQIPF 244
Cdd:PRK09777 173 GS----LWGRdwsfvKVALPWLILLLPLSLSFCRDLDLLALGDARATTLGVSVPHTQFWALLLAVALTATGVAACGPISF 248

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504804338 245 IGLVVPNIVSRLAGDRLRKNLPAVVLLGANLVLVCDIIGRVINAPYEVPISTIFGICGTVVFLYLLFRGK 314
Cdd:PRK09777 249 IGLVVPHLMRSLVGGRHRRLLPVSALTGALLLLLADLLARIIHPPLELPAGVLTAIIGAPWFFWLLVRMR 318
btuC PRK09535
cobalamin ABC transporter permease BtuC;
46-317 1.07e-21

cobalamin ABC transporter permease BtuC;


Pssm-ID: 236553  Cd Length: 366  Bit Score: 94.05  E-value: 1.07e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504804338  46 RLPRTLAIILVGATLSVAGMVLQIVLKNRFIEPSMIGASQSAALGVLAiSLIFPAAPLVAKMSFATCCALI-GMGIFMLL 124
Cdd:PRK09535  95 RLPRILLAATVGFALAAAGTVMQGFFRNPMADPSIIGVSSGAAVGAVA-AIVLPLAVPFGLQAAAFAGALVaAFGVYAIA 173

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504804338 125 LRN-LPPHQKLMvpLIGIVFGNIIEAITTFI-AYETDSLQLLSIWFSGDFSGVLAGRYEL-LWLTAALSIVIYIMADQLS 201
Cdd:PRK09535 174 TENgRTPVATLL--LAGVAVQTFLGAVISYLlLHSGESLRRAVYWLMGHLHGSTWSDVEVaLPVVVVGFVVLLAYARDLN 251

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504804338 202 ITGLGHNISTSLGINYRRMTWLALITVALITAVVVVTIGQIPFIGLVVPNIVSRLAGDRLRKNLPAVVLLGANLVLVCDI 281
Cdd:PRK09535 252 VLLLGEEDAHTLGIEVERTKRLLLALASVVTAAAVAVAGVIGFVGLIVPHVMRLLVGPDHRILLPTSALAGASFLVATDT 331

                        250       260       270
                 ....*....|....*....|....*....|....*.
gi 504804338 282 IGRviNAPYEVPISTIFGICGTVVFLYLLFRGKRHA 317
Cdd:PRK09535 332 VAR--SGPAEVPVGIVTAALGAPFFLYLLRTREVHA 365
PRK10441 PRK10441
Fe(3+)-siderophore ABC transporter permease;
45-315 8.43e-17

Fe(3+)-siderophore ABC transporter permease;


Pssm-ID: 182464  Cd Length: 335  Bit Score: 79.75  E-value: 8.43e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504804338  45 SRLPRTLAIILVGATLSVAGMVLQIVLKNRFIEPSMIGASQSAALGVLAISLIFPAAPLVAKMSFATCCALIGMGIFMLL 124
Cdd:PRK10441  59 ARLPRTLAGLLAGGALGLAGALMQTLTRNPLADPGLLGVNAGASFAIVLGAALFGYSSAQEQLAMAFAGALVASLIVAFT 138

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504804338 125 ----LRNLPPhqkLMVPLIGIVFGNIIEAITTFIAY-ETDSLQLLSIWFSGDFSgvLAGRYELLWLTAAL---SIVIYIM 196
Cdd:PRK10441 139 gsqgGGQLSP---VRLTLAGVALAAVLEGLTSGIALlNPDVYDQLRFWQAGSLD--IRNLHTLKVVLIPVliaGATALLL 213

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504804338 197 ADQLSITGLGHNISTSLGINYRRMTWLALITVALITAVVVVTIGQIPFIGLVVPNIVSRLAGDRLRKNLPAVVLLGANLV 276
Cdd:PRK10441 214 SRALNSLSLGSDTATALGSRVARTQLIGLLAITVLCGSATAVVGPIAFIGLMMPHMARWLVGADHRWSLPVTLLATPALL 293

                        250       260       270
                 ....*....|....*....|....*....|....*....
gi 504804338 277 LVCDIIGRVInAPYEVPISTIFGICGTVVFLYLLFRGKR 315
Cdd:PRK10441 294 LFADIIGRLL-VPGELRVSVVSAFIGAPVLIFLVRRKTR 331
PRK10440 PRK10440
iron-enterobactin ABC transporter permease;
46-315 8.51e-12

iron-enterobactin ABC transporter permease;


Pssm-ID: 182463  Cd Length: 330  Bit Score: 65.12  E-value: 8.51e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504804338  46 RLPRTLAIILVGATLSVAGMVLQIVLKNRFIEPSMIGASQSAALGVLAISLIFPA---APLVAKMSFATCCALIgmgIFM 122
Cdd:PRK10440  59 RLPRVLMALLIGAALGVSGAIFQSLMRNPLGSPDVMGFNTGAWSGVLVAMVLFGQdltAIALAAMAGGIVTSLL---VWL 135

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504804338 123 LLLRNLPPHQKLMVplIGIVFGNIIEAITTFIAYETDSLQLLS--IWFSGDFSGVLAGRyelLWLTAALSIVIYIMADQL 200
Cdd:PRK10440 136 LAWRNGIDTFRLII--IGIGVRAMLVAFNTWLLLKASLETALTagLWNAGSLNGLTWAK---TSPSAPIIILMLIAAALL 210

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504804338 201 S----ITGLGHNISTSLGINYRRMTWLALITVALITAVVVVTIGQIPFIGLVVPNIVSRLAGDRlRKNLPAVVLLGANLV 276
Cdd:PRK10440 211 VrrmrLLEMGDDTACALGVSVERSRLLLMLVAVVLTAAATALAGPISFIALVAPHIARRLSGTA-RWGLTQAALCGALLL 289

                        250       260       270
                 ....*....|....*....|....*....|....*....
gi 504804338 277 LVCDIIGRVINAPYEVPISTIFGICGTVVFLYLLFRGKR 315
Cdd:PRK10440 290 LAADLCAQQLFMPYQLPVGVVTVSLGGIYLIVLLIQESR 328
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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