|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10416 |
PRK10416 |
signal recognition particle-docking protein FtsY; Provisional |
57-358 |
2.13e-171 |
|
signal recognition particle-docking protein FtsY; Provisional
Pssm-ID: 236686 [Multi-domain] Cd Length: 318 Bit Score: 479.59 E-value: 2.13e-171
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504312661 57 KTNFFSRLKKGLIKTKQLLHNGINNIFLSKTIDDVLFEELEEKMLLADIGIDTSNRIISNLIKDVNRQDLKSSEKLYFLL 136
Cdd:PRK10416 13 KEGWFERLKKGLSKTRENFGEGINGLFAKKKIDEDLLEELEELLIEADVGVETTEEIIEELRERVKRKNLKDPEELKELL 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504312661 137 KKNMYNILKTVEIPLEISKHQPFVILVVGVNGTGKTTTIGKLAKKYKSEGKSVMLAAADTFRAAGIEQLQILGKLNNISV 216
Cdd:PRK10416 93 KEELAEILEPVEKPLNIEEKKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPV 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504312661 217 IAQHFGSDPAAVIFDAVKSAKSKKIDILIIDTAGRLHNKIHLIEELKKIVRVIKKLDISAPHEIMLIIDACNGQNTIKQT 296
Cdd:PRK10416 173 IAQKEGADPASVAFDAIQAAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQA 252
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 504312661 297 EIFHRALNLTGIVITKLDGTAKGGVIFSLADQFKIPIRYIGIGEDSKDLGIFNSNEFIDAIF 358
Cdd:PRK10416 253 KAFHEAVGLTGIILTKLDGTAKGGVVFAIADELGIPIKFIGVGEGIDDLQPFDAEEFVDALL 314
|
|
| FtsY |
COG0552 |
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular ... |
60-358 |
2.26e-171 |
|
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440318 [Multi-domain] Cd Length: 303 Bit Score: 479.13 E-value: 2.26e-171
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504312661 60 FFSRLKKGLIKTKQLLHNGINNIFL-SKTIDDVLFEELEEKMLLADIGIDTSNRIISNLIKDVNRQDLKSSEKLYFLLKK 138
Cdd:COG0552 1 FFERLKEGLSKTRSGLGEKLKSLFSgKKKIDEDLLEELEELLIEADVGVETTEEIIEELRERVKRKKLKDPEELKEALKE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504312661 139 NMYNILKTVEIPLEISKHQPFVILVVGVNGTGKTTTIGKLAKKYKSEGKSVMLAAADTFRAAGIEQLQILGKLNNISVIA 218
Cdd:COG0552 81 ELLEILDPVDKPLAIEEKKPFVILVVGVNGVGKTTTIGKLAHRLKAEGKSVLLAAGDTFRAAAIEQLEVWGERVGVPVIA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504312661 219 QHFGSDPAAVIFDAVKSAKSKKIDILIIDTAGRLHNKIHLIEELKKIVRVIKKLDISAPHEIMLIIDACNGQNTIKQTEI 298
Cdd:COG0552 161 QKEGADPAAVAFDAIQAAKARGADVVIIDTAGRLHNKKNLMEELKKIKRVIKKLDPDAPHEVLLVLDATTGQNALSQAKV 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 504312661 299 FHRALNLTGIVITKLDGTAKGGVIFSLADQFKIPIRYIGIGEDSKDLGIFNSNEFIDAIF 358
Cdd:COG0552 241 FNEAVGVTGIVLTKLDGTAKGGVVLAIADELGIPIKFIGVGEGIDDLRPFDAEEFVDALF 300
|
|
| ftsY |
TIGR00064 |
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and ... |
88-358 |
3.61e-119 |
|
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 272883 [Multi-domain] Cd Length: 277 Bit Score: 345.78 E-value: 3.61e-119
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504312661 88 IDDVLFEELEEKMLLADIGIDTSNRIISNLIKDVNRQDLKSSEKLYFLLKKNMYNILKT-----VEIPLEISKHQPFVIL 162
Cdd:TIGR00064 2 DDEDFFEELEEILLESDVGYEVVEKIIEALKKELKGKKVKDAEKLKEILKEYLKEILKEdllknTDLELIVEENKPNVIL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504312661 163 VVGVNGTGKTTTIGKLAKKYKSEGKSVMLAAADTFRAAGIEQLQILGKLNNISVIAQHFGSDPAAVIFDAVKSAKSKKID 242
Cdd:TIGR00064 82 FVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKARNID 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504312661 243 ILIIDTAGRLHNKIHLIEELKKIVRVIKKLDISAPHEIMLIIDACNGQNTIKQTEIFHRALNLTGIVITKLDGTAKGGVI 322
Cdd:TIGR00064 162 VVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILTKLDGTAKGGII 241
|
250 260 270
....*....|....*....|....*....|....*.
gi 504312661 323 FSLADQFKIPIRYIGIGEDSKDLGIFNSNEFIDAIF 358
Cdd:TIGR00064 242 LSIAYELKLPIKFIGVGEKIDDLAPFDADWFVEALF 277
|
|
| FtsY |
cd17874 |
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle ... |
159-357 |
6.35e-105 |
|
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle (SRP) receptor (SR), is homologous to the SRP receptor alpha-subunit (SRalpha) of the eukaryotic SR. It interacts with the signal-recognition particle (SRP) and is required for the co-translational membrane targeting of proteins.
Pssm-ID: 349783 Cd Length: 199 Bit Score: 306.42 E-value: 6.35e-105
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504312661 159 FVILVVGVNGTGKTTTIGKLAKKYKSEGKSVMLAAADTFRAAGIEQLQILGKLNNISVIAQHFGSDPAAVIFDAVKSAKS 238
Cdd:cd17874 1 FVILFVGVNGVGKTTTIGKLAHYLKNQGKKVVLAAGDTFRAAAVEQLEEWAERLGVPVISQNEGADPAAVAFDAIQAAKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504312661 239 KKIDILIIDTAGRLHNKIHLIEELKKIVRVIKKLDISAPHEIMLIIDACNGQNTIKQTEIFHRALNLTGIVITKLDGTAK 318
Cdd:cd17874 81 RGIDVVLIDTAGRLHTKKNLMEELKKIKRVIKKKDPEAPHEVLLVLDATTGQNALEQAKEFNEAVGLTGIILTKLDGTAK 160
|
170 180 190
....*....|....*....|....*....|....*....
gi 504312661 319 GGVIFSLADQFKIPIRYIGIGEDSKDLGIFNSNEFIDAI 357
Cdd:cd17874 161 GGIVLSIADELKIPVKFVGVGEGIDDLRPFDPEAFVEAL 199
|
|
| SRP54 |
smart00962 |
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 ... |
158-358 |
4.36e-96 |
|
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins.
Pssm-ID: 214940 Cd Length: 197 Bit Score: 283.92 E-value: 4.36e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504312661 158 PFVILVVGVNGTGKTTTIGKLAKKYKSEG-KSVMLAAADTFRAAGIEQLQILGKLNNISVIAQHFGSDPAAVIFDAVKSA 236
Cdd:smart00962 1 PGVILLVGPNGVGKTTTIAKLAARLKLKGgKKVLLVAADTFRAAAVEQLKTYAEILGVVPVAGGEGADPVAVAKDAVELA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504312661 237 KSKKIDILIIDTAGRLHNKIHLIEELKKIVRVIKkldisaPHEIMLIIDACNGQNTIKQTEIFHRALNLTGIVITKLDGT 316
Cdd:smart00962 81 KARGYDVVLIDTAGRLHNDENLMEELKKIKRVIK------PDEVLLVSDATTGQDAVEQAKAFNEALGLTGIILTKLDGT 154
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 504312661 317 AKGGVIFSLADQFKIPIRYIGIGEDSKDLGIFNSNEFIDAIF 358
Cdd:smart00962 155 AKGGAALSIAAETGLPIKFIGTGEKVPDLEPFDPERFVSRLL 196
|
|
| SRP54 |
pfam00448 |
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 ... |
159-357 |
7.95e-91 |
|
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 family of proteins.
Pssm-ID: 459814 [Multi-domain] Cd Length: 193 Bit Score: 270.57 E-value: 7.95e-91
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504312661 159 FVILVVGVNGTGKTTTIGKLAKKYKSEGKSVMLAAADTFRAAGIEQLQILGKLNNISVIAQHFGSDPAAVIFDAVKSAKS 238
Cdd:pfam00448 1 NVILLVGLQGSGKTTTIAKLAAYLKKKGKKVLLVAADTFRAAAIEQLKQLAEKLGVPVFGSKTGADPAAVAFDAVEKAKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504312661 239 KKIDILIIDTAGRLHNKIHLIEELKKIVRVIKkldisaPHEIMLIIDACNGQNTIKQTEIFHRALNLTGIVITKLDGTAK 318
Cdd:pfam00448 81 ENYDVVLVDTAGRLQNDKNLMDELKKIKRVVA------PDEVLLVLDATTGQNAVNQAKAFNEAVGITGVILTKLDGDAK 154
|
170 180 190
....*....|....*....|....*....|....*....
gi 504312661 319 GGVIFSLADQFKIPIRYIGIGEDSKDLGIFNSNEFIDAI 357
Cdd:pfam00448 155 GGAALSIVAETGKPIKFIGVGEKIDDLEPFDPERFVSRL 193
|
|
| SRP_G_like |
cd03115 |
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition ... |
159-357 |
1.29e-77 |
|
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognate receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349769 [Multi-domain] Cd Length: 193 Bit Score: 236.89 E-value: 1.29e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504312661 159 FVILVVGVNGTGKTTTIGKLAKKYKSEGKSVMLAAADTFRAAGIEQLQILGKLNNISVIAQHFGSDPAAVIFDAVKSAKS 238
Cdd:cd03115 1 NVILLVGLQGSGKTTTLAKLARYYQEKGKKVLLIAADTFRAAAVEQLKTLAEKLGVPVFESYTGTDPASIAQEAVEKAKL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504312661 239 KKIDILIIDTAGRLHNKIHLIEELKKIVRVIkkldisAPHEIMLIIDACNGQNTIKQTEIFHRALNLTGIVITKLDGTAK 318
Cdd:cd03115 81 EGYDVLLVDTAGRLQKDEPLMEELKKVKEVE------SPDEVLLVLDATTGQEALSQAKAFNEAVGLTGVILTKLDGTAK 154
|
170 180 190
....*....|....*....|....*....|....*....
gi 504312661 319 GGVIFSLADQFKIPIRYIGIGEDSKDLGIFNSNEFIDAI 357
Cdd:cd03115 155 GGAALSIVAETKKPIKFIGVGEKPEDLEPFDPERFVSAL 193
|
|
| PRK14974 |
PRK14974 |
signal recognition particle-docking protein FtsY; |
16-360 |
9.39e-77 |
|
signal recognition particle-docking protein FtsY;
Pssm-ID: 237875 [Multi-domain] Cd Length: 336 Bit Score: 239.87 E-value: 9.39e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504312661 16 KIKKE--KTQDIIQNNNEKKNKIEILNNIDTDINcEDETNIVIKTNFFSRLKKGLIKTKQllhnginniflsktIDDVLf 93
Cdd:PRK14974 4 KLKEKlsKFVEKVEEKIEEEEEEEAPEAEEEEEE-EDEEEKKEKPGFFDKAKITEIKEKD--------------IEDLL- 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504312661 94 EELEEKMLLADIGIDTSNRIISNLIKDVNRQDLKSSEKLYFL----LKKNMYNIL---KTVEIPLEISKH-QPFVILVVG 165
Cdd:PRK14974 68 EELELELLESDVALEVAEEILESLKEKLVGKKVKRGEDVEEIvknaLKEALLEVLsvgDLFDLIEEIKSKgKPVVIVFVG 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504312661 166 VNGTGKTTTIGKLAKKYKSEGKSVMLAAADTFRAAGIEQLQILGKLNNISVIAQHFGSDPAAVIFDAVKSAKSKKIDILI 245
Cdd:PRK14974 148 VNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAKARGIDVVL 227
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504312661 246 IDTAGRLHNKIHLIEELKKIVRVIKkldisaPHEIMLIIDACNGQNTIKQTEIFHRALNLTGIVITKLDGTAKGGVIFSL 325
Cdd:PRK14974 228 IDTAGRMHTDANLMDELKKIVRVTK------PDLVIFVGDALAGNDAVEQAREFNEAVGIDGVILTKVDADAKGGAALSI 301
|
330 340 350
....*....|....*....|....*....|....*
gi 504312661 326 ADQFKIPIRYIGIGEDSKDLGIFNSNEFIDAIFIE 360
Cdd:PRK14974 302 AYVIGKPILFLGVGQGYDDLIPFDPDWFVDKLLGE 336
|
|
| Ffh |
COG0541 |
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular ... |
142-361 |
4.51e-66 |
|
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440307 [Multi-domain] Cd Length: 423 Bit Score: 214.88 E-value: 4.51e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504312661 142 NILKTVEIPLEISKHQPFVILVVGVNGTGKTTTIGKLAKKYKSEGKSVMLAAADTFRAAGIEQLQILGKLNNISVIAQHF 221
Cdd:COG0541 84 ELLGGENEELNLAKKPPTVIMMVGLQGSGKTTTAAKLAKYLKKKGKKPLLVAADVYRPAAIEQLKTLGEQIGVPVFPEED 163
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504312661 222 GSDPAAVIFDAVKSAKSKKIDILIIDTAGRLHNKIHLIEELKKIVRVIKkldisaPHEIMLIIDACNGQNTIKQTEIFHR 301
Cdd:COG0541 164 GKDPVDIAKRALEYAKKNGYDVVIVDTAGRLHIDEELMDELKAIKAAVN------PDETLLVVDAMTGQDAVNVAKAFNE 237
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 504312661 302 ALNLTGIVITKLDGTAKGGVIFSLADQFKIPIRYIGIGEDSKDLGIFNSNEFIDAI--------FIEK 361
Cdd:COG0541 238 ALGLTGVILTKLDGDARGGAALSIRAVTGKPIKFIGTGEKLDDLEPFHPDRMASRIlgmgdvlsLIEK 305
|
|
| SRP_G |
cd18539 |
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) ... |
160-348 |
7.60e-60 |
|
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349786 Cd Length: 193 Bit Score: 191.27 E-value: 7.60e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504312661 160 VILVVGVNGTGKTTTIGKLAKKYKSEGKSVMLAAADTFRAAGIEQLQILGKLNNISVIAQHFGSDPAAVIFDAVKSAKSK 239
Cdd:cd18539 2 VILLVGLQGSGKTTTAAKLALYLKKKGKKVLLVAADVYRPAAIEQLQTLGEQVGVPVFESGDGQSPVDIAKRALEKAKEE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504312661 240 KIDILIIDTAGRLHNKIHLIEELKKIVRVIKkldisaPHEIMLIIDACNGQNTIKQTEIFHRALNLTGIVITKLDGTAKG 319
Cdd:cd18539 82 GFDVVIVDTAGRLHIDEELMDELKEIKEVLN------PDEVLLVVDAMTGQDAVNVAKAFNERLGLTGVVLTKLDGDARG 155
|
170 180
....*....|....*....|....*....
gi 504312661 320 GVIFSLADQFKIPIRYIGIGEDSKDLGIF 348
Cdd:cd18539 156 GAALSIRHVTGKPIKFIGVGEKIEDLEPF 184
|
|
| PRK00771 |
PRK00771 |
signal recognition particle protein Srp54; Provisional |
148-354 |
5.75e-57 |
|
signal recognition particle protein Srp54; Provisional
Pssm-ID: 179118 [Multi-domain] Cd Length: 437 Bit Score: 191.57 E-value: 5.75e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504312661 148 EIPLEISKHQPFVILVVGVNGTGKTTTIGKLAKKYKSEGKSVMLAAADTFRAAGIEQLQILGKLNNISVIAQHFGSDPAA 227
Cdd:PRK00771 85 ETEPLVLPLKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVE 164
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504312661 228 VIFDAVKSAKSKkiDILIIDTAGRLHNKIHLIEELKKIVRVIKkldisaPHEIMLIIDACNGQNTIKQTEIFHRALNLTG 307
Cdd:PRK00771 165 IAKEGLEKFKKA--DVIIVDTAGRHALEEDLIEEMKEIKEAVK------PDEVLLVIDATIGQQAKNQAKAFHEAVGIGG 236
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 504312661 308 IVITKLDGTAKGGVIFSLADQFKIPIRYIGIGEDSKDLGIFNSNEFI 354
Cdd:PRK00771 237 IIITKLDGTAKGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFI 283
|
|
| SRP54_G |
cd17875 |
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) ... |
159-354 |
1.21e-49 |
|
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349784 Cd Length: 193 Bit Score: 165.06 E-value: 1.21e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504312661 159 FVILVVGVNGTGKTTTIGKLAKKYKSEGKSVMLAAADTFRAAGIEQLQILGKLNNISVIAQHFGSDPAAVIFDAVKSAKS 238
Cdd:cd17875 1 NVIMFVGLQGSGKTTTAAKLAYYYQKKGYKVGLVCADTFRAGAFDQLKQNATKARVPFYGSYTEKDPVKIAKEGVEKFKK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504312661 239 KKIDILIIDTAGRLHNKIHLIEELKKIVRVIKkldisaPHEIMLIIDACNGQNTIKQTEIFHRALNLTGIVITKLDGTAK 318
Cdd:cd17875 81 EKFDIIIVDTSGRHKQEEELFEEMKQISDAVK------PDEVILVIDASIGQAAEDQAKAFKEAVDIGSVIITKLDGHAK 154
|
170 180 190
....*....|....*....|....*....|....*.
gi 504312661 319 GGVIFSLADQFKIPIRYIGIGEDSKDLGIFNSNEFI 354
Cdd:cd17875 155 GGGALSAVAATGAPIIFIGTGEHIDDLEPFDPKRFV 190
|
|
| SRP54_euk |
TIGR01425 |
signal recognition particle protein SRP54; This model represents examples from the eukaryotic ... |
92-354 |
4.83e-39 |
|
signal recognition particle protein SRP54; This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Pssm-ID: 273615 [Multi-domain] Cd Length: 428 Bit Score: 143.82 E-value: 4.83e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504312661 92 LFEELEEKMLLADIGIDTSNRIISNLIKDVNRQDLKSSEKLYFLLKKNMY----NILKTVEIPLEISKHQPFVILVVGVN 167
Cdd:TIGR01425 30 MLKEICTALLESDVNPKLVRQMRNNIKKKINLEDIASGINKRKLIQDAVFeelcNLVDPGVEAFTPKKGKTCVIMFVGLQ 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504312661 168 GTGKTTTIGKLAKKYKSEGKSVMLAAADTFRAAGIEQLQILGKLNNISVIAQHFGSDPAAVIFDAVKSAKSKKIDILIID 247
Cdd:TIGR01425 110 GAGKTTTCTKLAYYYKRRGFKPALVCADTFRAGAFDQLKQNATKAGIPFYGSYEESDPVKIASEGVEKFRKEKFDIIIVD 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504312661 248 TAGRLHNKIHLIEELKKIVRVIKkldisaPHEIMLIIDACNGQNTIKQTEIFHRALNLTGIVITKLDGTAKGGVIFSLAD 327
Cdd:TIGR01425 190 TSGRHKQEKELFEEMQQVREAIK------PDSIIFVMDGSIGQAAFGQAKAFKDSVEVGSVIITKLDGHAKGGGALSAVA 263
|
250 260
....*....|....*....|....*..
gi 504312661 328 QFKIPIRYIGIGEDSKDLGIFNSNEFI 354
Cdd:TIGR01425 264 ATKSPIIFIGTGEHVDEFEIFDAEPFV 290
|
|
| SRalpha_C |
cd17876 |
C-terminal domain of signal recognition particle receptor alpha subunit; The ... |
159-357 |
9.37e-38 |
|
C-terminal domain of signal recognition particle receptor alpha subunit; The signal-recognition particle (SRP) receptor (SR) alpha-subunit (SRalpha) of the eukaryotic SR interacts with the signal-recognition particle (SRP) and is essential for the co-translational membrane targeting of proteins.
Pssm-ID: 349785 Cd Length: 204 Bit Score: 134.28 E-value: 9.37e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504312661 159 FVILVVGVNGTGKTTTIGKLAKKYKSEGKSVMLAAADTFRAAGIEQLQILGKLNNISVIAQHFGSDPAAVIFDAVKSAKS 238
Cdd:cd17876 1 YVIVFCGVNGVGKSTNLAKIAYWLLSNGFRVLIAACDTFRSGAVEQLRTHARRLGVELYEKGYGKDPAAVAKEAIKYARD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504312661 239 KKIDILIIDTAGRLHNKIHLIEELKKIVRVIKkldisaPHEIMLIIDACNGQNTIKQTEIFHRAL----------NLTGI 308
Cdd:cd17876 81 QGFDVVLIDTAGRMQNNEPLMRALAKLIKENN------PDLVLFVGEALVGNDAVDQLKKFNQALadyspsdnprLIDGI 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 504312661 309 VITKLDGTA-KGGVIFSLADQFKIPIRYIGIGEDSKDLGIFNSNEFIDAI 357
Cdd:cd17876 155 VLTKFDTIDdKVGAALSMVYATGQPIVFVGTGQTYTDLKKLNVKAVVNSL 204
|
|
| FlhF |
COG1419 |
Flagellar biosynthesis GTPase FlhF [Cell motility]; |
72-358 |
1.20e-37 |
|
Flagellar biosynthesis GTPase FlhF [Cell motility];
Pssm-ID: 441029 [Multi-domain] Cd Length: 361 Bit Score: 138.46 E-value: 1.20e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504312661 72 KQLLHNGINNIFLSKTIDDVLFEELEEKMLLADIGIDTSNRIISNLIKDVnrqdlkSSEKLYFLLKKNMYNILKTVEIPL 151
Cdd:COG1419 87 KELLEEQLSGLAGESARLPPELAELLERLLEAGVSPELARELLEKLPEDL------SAEEAWRALLEALARRLPVAEDPL 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504312661 152 EISKHqpfVILVVGVNGTGKTTTIGKLAKKYK-SEGKSVMLAAADTFRAAGIEQLQILGKLNNISViaqHFGSDPAAVIf 230
Cdd:COG1419 161 LDEGG---VIALVGPTGVGKTTTIAKLAARFVlRGKKKVALITTDTYRIGAVEQLKTYARILGVPV---EVAYDPEELK- 233
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504312661 231 DAVKSAKSKkiDILIIDTAGRLHNKIHLIEELKKIvrvikkLDISAPHEIMLIIDACNGQNTIKqtEIFHR--ALNLTGI 308
Cdd:COG1419 234 EALERLRDK--DLVLIDTAGRSPRDPELIEELKAL------LDAGPPIEVYLVLSATTKYEDLK--EIVEAfsSLGLDGL 303
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 504312661 309 VITKLDGTAKGGVIFSLADQFKIPIRYIGIGED-SKDLGIFNSNEFIDAIF 358
Cdd:COG1419 304 ILTKLDETASLGSILNLLIRTGLPLSYITNGQRvPEDIEVADPERLARLLL 354
|
|
| flhF |
PRK05703 |
flagellar biosynthesis protein FlhF; |
14-339 |
6.37e-28 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235570 [Multi-domain] Cd Length: 424 Bit Score: 113.07 E-value: 6.37e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504312661 14 SSKIKKEKTQDIIQNNNEKKNKIEILNNIDTDINCEDETNIVIKTNFFSRLKKGLIKTKQLLHNGINNIFLSKTIDDVlF 93
Cdd:PRK05703 85 PSRTNSQDALLQAENALPEWKKELEKPSEPKEEEPKAAAESKVVQKELDELRDELKELKNLLEDQLSGLRQVERIPPE-F 163
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504312661 94 EELEEKMLLADIGIDTSNRIISNLIKDVNRQDLKSSEKLYFLLKKNmynILKTVEIPLEISKhqpfVILVVGVNGTGKTT 173
Cdd:PRK05703 164 AELYKRLKRSGLSPEIAEKLLKLLLEHMPPRERTAWRYLLELLANM---IPVRVEDILKQGG----VVALVGPTGVGKTT 236
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504312661 174 TIGKLAKKY--KSEGKSVMLAAADTFRAAGIEQLQILGKLNNISVIAQHFGSDPAavifDAVKSAKSKKIdILiIDTAGR 251
Cdd:PRK05703 237 TLAKLAARYalLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELA----KALEQLRDCDV-IL-IDTAGR 310
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504312661 252 LHNKIHLIEELKKIvrvikkLDIS-APHEIMLIIdACNGQN-----TIKQteiFhRALNLTGIVITKLDGTAKGGVIFSL 325
Cdd:PRK05703 311 SQRDKRLIEELKAL------IEFSgEPIDVYLVL-SATTKYedlkdIYKH---F-SRLPLDGLIFTKLDETSSLGSILSL 379
|
330
....*....|....
gi 504312661 326 ADQFKIPIRYIGIG 339
Cdd:PRK05703 380 LIESGLPISYLTNG 393
|
|
| FlhF |
cd17873 |
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP) ... |
160-354 |
2.70e-27 |
|
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP)-type GTPase that is essential for the placement and assembly of polar flagella. It is similar to the 54 kd subunit (SRP54) of the signal recognition particle (SRP) that mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR).
Pssm-ID: 349782 [Multi-domain] Cd Length: 189 Bit Score: 106.09 E-value: 2.70e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504312661 160 VILVVGVNGTGKTTTIGKLAKKYK-SEGKSVMLAAADTFRAAGIEQLQILGKLNNISVIAQhFGSDPAAVIFDAVKSAks 238
Cdd:cd17873 2 VIALVGPTGVGKTTTLAKLAARYVlKKGKKVALITTDTYRIGAVEQLKTYAEIMGIPVEVA-EDPEDLADALERLSDR-- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504312661 239 kkiDILIIDTAGRLHNKIHLIEELKKIVRVikkldiSAPHEIMLIIDACNGQNTIKqtEIFHR--ALNLTGIVITKLDGT 316
Cdd:cd17873 79 ---DLILIDTAGRSPRDKEQLEELKELLGA------GEDIEVHLVLSATTKAKDLK--EIIERfsPLGYRGLILTKLDET 147
|
170 180 190
....*....|....*....|....*....|....*....
gi 504312661 317 AKGGVIFSLADQFKIPIRYIGIGED-SKDLGIFNSNEFI 354
Cdd:cd17873 148 TSLGSVLSVLAESQLPVSYVTTGQRvPEDIEVASPLRLA 186
|
|
| FlhF |
TIGR03499 |
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility] |
63-250 |
4.12e-18 |
|
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility]
Pssm-ID: 274609 [Multi-domain] Cd Length: 282 Bit Score: 83.15 E-value: 4.12e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504312661 63 RLKKGLIKTKQLLHNGINNifLSKTIDDVLFEELEEKMLLADIGIDTSNRIISNLIKDVNRQDLKSSEKLYflLKKNMYN 142
Cdd:TIGR03499 108 ELRKELEALRELLERLLAG--LAWLQRPPERAKLYERLLEAGVSEELARELLEKLPEDADAEDAWRWLREA--LEGMLPV 183
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504312661 143 ilKTVEIPLEiskHQPFVILVVGVNGTGKTTTIGKLAKKY--KSEGKSVMLAAADTFRAAGIEQLQILGKLNNISVIAQH 220
Cdd:TIGR03499 184 --KPEEDPIL---EQGGVIALVGPTGVGKTTTLAKLAARFalEHGKKKVALITTDTYRIGAVEQLKTYAEILGIPVKVAR 258
|
170 180 190
....*....|....*....|....*....|
gi 504312661 221 fgsDPAAVIfDAVKSAKSKkiDILIIDTAG 250
Cdd:TIGR03499 259 ---DPKELR-EALDRLRDK--DLILIDTAG 282
|
|
| PRK12724 |
PRK12724 |
flagellar biosynthesis regulator FlhF; Provisional |
155-341 |
2.28e-15 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183703 [Multi-domain] Cd Length: 432 Bit Score: 76.93 E-value: 2.28e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504312661 155 KHQPFVILVVGVNGTGKTTTIGKLAKKYK-SEGKSVMLAAADTFRAAGIEQLQilgklnnisviaqhFGSDPAAVIFDAV 233
Cdd:PRK12724 220 KNQRKVVFFVGPTGSGKTTSIAKLAAKYFlHMGKSVSLYTTDNYRIAAIEQLK--------------RYADTMGMPFYPV 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504312661 234 KSAKSKK-------IDILIIDTAGRLHNKIHLIEELKKIVRVIKKLDisaPHEIMLIIDACNGQNTIKQTEIFHRALNLT 306
Cdd:PRK12724 286 KDIKKFKetlardgSELILIDTAGYSHRNLEQLERMQSFYSCFGEKD---SVENLLVLSSTSSYHHTLTVLKAYESLNYR 362
|
170 180 190
....*....|....*....|....*....|....*
gi 504312661 307 GIVITKLDGTAKGGVIFSLADQFKIPIRYIGIGED 341
Cdd:PRK12724 363 RILLTKLDEADFLGSFLELADTYSKSFTYLSVGQE 397
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
157-302 |
4.13e-13 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 66.24 E-value: 4.13e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504312661 157 QPFVILVVGVNGTGKTTTIGKLAKKYKSEGKSVMLAAADTFRAAGIEQLQilgklnNISVIAQHFGSDPAAVIFDAVKSA 236
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL------LIIVGGKKASGSGELRLRLALALA 74
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 504312661 237 KSKKIDILIIDTAGRLHNKIHLIEELKKIVRviKKLDISAPHEIMLIIDACNGQNTIKQTEIFHRA 302
Cdd:smart00382 75 RKLKPDVLILDEITSLLDAEQEALLLLLEEL--RLLLLLKSEKNLTVILTTNDEKDLGPALLRRRF 138
|
|
| PRK12727 |
PRK12727 |
flagellar biosynthesis protein FlhF; |
150-344 |
1.18e-12 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 237182 [Multi-domain] Cd Length: 559 Bit Score: 68.86 E-value: 1.18e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504312661 150 PLEiskhQPFVILVVGVNGTGKTTTIGKLAKKY--KSEGKSVMLAAADTFRAAGIEQLQILGKLNNISViaqHfGSDPAA 227
Cdd:PRK12727 346 PLE----RGGVIALVGPTGAGKTTTIAKLAQRFaaQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAV---H-EADSAE 417
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504312661 228 VIFDAVKSAKSKKidILIIDTAGRLHNKIHLIEELK--KIVRVIKKLdisapheIMLIIDACNGQntikQTEIFHR--AL 303
Cdd:PRK12727 418 SLLDLLERLRDYK--LVLIDTAGMGQRDRALAAQLNwlRAARQVTSL-------LVLPANAHFSD----LDEVVRRfaHA 484
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 504312661 304 NLTGIVITKLDGTAKGGVIFSLADQFKIPIRYIGIGEDSKD 344
Cdd:PRK12727 485 KPQGVVLTKLDETGRFGSALSVVVDHQMPITWVTDGQRVPD 525
|
|
| flhF |
PRK14723 |
flagellar biosynthesis regulator FlhF; Provisional |
160-358 |
1.66e-12 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 237802 [Multi-domain] Cd Length: 767 Bit Score: 68.67 E-value: 1.66e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504312661 160 VILVVGVNGTGKTTTIGKLAKKY-KSEGKS-VMLAAADTFRAAGIEQLQILGKLNNISViaqHFGSDpAAVIFDAVKSAK 237
Cdd:PRK14723 187 VLALVGPTGVGKTTTTAKLAARCvAREGADqLALLTTDSFRIGALEQLRIYGRILGVPV---HAVKD-AADLRFALAALG 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504312661 238 SKKidILIIDTAGRLHNKIHLIEELKKIVRVikkldiSAPHEIMLIIDACNGQNTIKqtEIFHR-----ALNLTGIVITK 312
Cdd:PRK14723 263 DKH--LVLIDTVGMSQRDRNVSEQIAMLCGV------GRPVRRLLLLNAASHGDTLN--EVVHAyrhgaGEDVDGCIITK 332
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 504312661 313 LDGTAKGGVIFSLADQFKIPIRYIGIGED-SKDLGIFNSNEFIDAIF 358
Cdd:PRK14723 333 LDEATHLGPALDTVIRHRLPVHYVSTGQKvPEHLELAQADELVDRAF 379
|
|
| flhF |
PRK11889 |
flagellar biosynthesis protein FlhF; |
161-343 |
1.19e-11 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 183360 [Multi-domain] Cd Length: 436 Bit Score: 65.47 E-value: 1.19e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504312661 161 ILVVGVNGTGKTTTIGKLAKKYKSEGKSVMLAAADTFRAAGIEQLQILGKLNNISVIAQHfgsDPAAVIFDAVKSAKSKK 240
Cdd:PRK11889 244 IALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVR---DEAAMTRALTYFKEEAR 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504312661 241 IDILIIDTAGRLHNKIHLIEELkkiVRVIKKLDisaPHEIMLIIDACNGQNTIKQTEIFHRALNLTGIVITKLDGTAKGG 320
Cdd:PRK11889 321 VDYILIDTAGKNYRASETVEEM---IETMGQVE---PDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSG 394
|
170 180
....*....|....*....|...
gi 504312661 321 VIFSLADQFKIPIRYIGIGEDSK 343
Cdd:PRK11889 395 ELLKIPAVSSAPIVLMTDGQDVK 417
|
|
| flhF |
PRK06731 |
flagellar biosynthesis regulator FlhF; Validated |
161-343 |
2.06e-11 |
|
flagellar biosynthesis regulator FlhF; Validated
Pssm-ID: 75717 [Multi-domain] Cd Length: 270 Bit Score: 63.61 E-value: 2.06e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504312661 161 ILVVGVNGTGKTTTIGKLAKKYKSEGKSVMLAAADTFRAAGIEQLQILGKLNNISVIAQHfgsDPAAVIFDAVKSAKSKK 240
Cdd:PRK06731 78 IALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVR---DEAAMTRALTYFKEEAR 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504312661 241 IDILIIDTAGRLHNKIHLIEELkkivrvIKKLDISAPHEIMLIIDACNGQNTIKQTEIFHRALNLTGIVITKLDGTAKGG 320
Cdd:PRK06731 155 VDYILIDTAGKNYRASETVEEM------IETMGQVEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSG 228
|
170 180
....*....|....*....|...
gi 504312661 321 VIFSLADQFKIPIRYIGIGEDSK 343
Cdd:PRK06731 229 ELLKIPAVSSAPIVLMTDGQDVK 251
|
|
| flhF |
PRK14722 |
flagellar biosynthesis regulator FlhF; Provisional |
160-340 |
3.60e-10 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173185 [Multi-domain] Cd Length: 374 Bit Score: 60.89 E-value: 3.60e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504312661 160 VILVVGVNGTGKTTTIGKLAKK--YKSEGKSVMLAAADTFRAAGIEQLQILGKLNNISVIAQHFGSDPAAVIfdavksAK 237
Cdd:PRK14722 139 VFALMGPTGVGKTTTTAKLAARcvMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLAL------AE 212
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504312661 238 SKKIDILIIDTAGRLHNKIHLIEElkkiVRVIKKLDisAPHEIMLIIDACNGQNTIKQTEIFHRAL---------NLTGI 308
Cdd:PRK14722 213 LRNKHMVLIDTIGMSQRDRTVSDQ----IAMLHGAD--TPVQRLLLLNATSHGDTLNEVVQAYRSAagqpkaalpDLAGC 286
|
170 180 190
....*....|....*....|....*....|..
gi 504312661 309 VITKLDGTAKGGVIFSLADQFKIPIRYIGIGE 340
Cdd:PRK14722 287 ILTKLDEASNLGGVLDTVIRYKLPVHYVSTGQ 318
|
|
| PRK12726 |
PRK12726 |
flagellar biosynthesis regulator FlhF; Provisional |
147-341 |
1.62e-09 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183704 [Multi-domain] Cd Length: 407 Bit Score: 58.98 E-value: 1.62e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504312661 147 VEIPLEISKHQpfVILVVGVNGTGKTTTIGKLAKKYKSEGKSVMLAAADTFRAAGIEQLQILGKLNNISVIAqhfGSDPA 226
Cdd:PRK12726 197 VEDSFDLSNHR--IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIV---ATSPA 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504312661 227 AVIFDAVKSAKSKKIDILIIDTAGRLHNKIHLIEELKKIVRVIkkldisapHEIMLIIDACNGQNTIKQTEIFHR--ALN 304
Cdd:PRK12726 272 ELEEAVQYMTYVNCVDHILIDTVGRNYLAEESVSEISAYTDVV--------HPDLTCFTFSSGMKSADVMTILPKlaEIP 343
|
170 180 190
....*....|....*....|....*....|....*..
gi 504312661 305 LTGIVITKLDGTAKGGVIFSLADQFKIPIRYIGIGED 341
Cdd:PRK12726 344 IDGFIITKMDETTRIGDLYTVMQETNLPVLYMTDGQN 380
|
|
| flhF |
PRK14721 |
flagellar biosynthesis regulator FlhF; Provisional |
160-358 |
3.44e-09 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173184 [Multi-domain] Cd Length: 420 Bit Score: 58.04 E-value: 3.44e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504312661 160 VILVVGVNGTGKTTTIGKLAKK--YKSEGKSVMLAAADTFRAAGIEQLQILGKLNNISViaqHFGSDPAAVIFdAVKSAK 237
Cdd:PRK14721 193 VYALIGPTGVGKTTTTAKLAARavIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSV---RSIKDIADLQL-MLHELR 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504312661 238 SKKidILIIDTAGRLHNKIHLIEELKKIVRV---IKKLdisapheimLIIDACNGQNTIKQTEIFHRALNLTGIVITKLD 314
Cdd:PRK14721 269 GKH--MVLIDTVGMSQRDQMLAEQIAMLSQCgtqVKHL---------LLLNATSSGDTLDEVISAYQGHGIHGCIITKVD 337
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 504312661 315 GTAKGGVIFSLADQFKIPIRYIGIGED-SKDLGIFNSNEFIDAIF 358
Cdd:PRK14721 338 EAASLGIALDAVIRRKLVLHYVTNGQKvPEDLHEANSRYLLHRIF 382
|
|
| PRK12723 |
PRK12723 |
flagellar biosynthesis regulator FlhF; Provisional |
153-340 |
1.17e-08 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183702 [Multi-domain] Cd Length: 388 Bit Score: 56.06 E-value: 1.17e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504312661 153 ISKHQPFVILVVGVNGTGKTTTIGKLAKKY----KSEGKSVMLAAADTFRAAGIEQLQILGKLNNISVIAQHFGSDPAAV 228
Cdd:PRK12723 169 IDNLKKRVFILVGPTGVGKTTTIAKLAAIYginsDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEE 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504312661 229 IFDavksakSKKIDILIIDTAGRLHNKIHLIEELKKIVRVIKKldisaPHEIMLIIDACNGQNTIKqtEIFHR--ALNLT 306
Cdd:PRK12723 249 ITQ------SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGR-----DAEFHLAVSSTTKTSDVK--EIFHQfsPFSYK 315
|
170 180 190
....*....|....*....|....*....|....
gi 504312661 307 GIVITKLDGTAKGGVIFSLADQFKIPIRYIGIGE 340
Cdd:PRK12723 316 TVIFTKLDETTCVGNLISLIYEMRKEVSYVTDGQ 349
|
|
| DEXSc_RecD-like |
cd17933 |
DEXS-box helicase domain of RecD and similar proteins; RecD is a member of the RecBCD (EC 3.1. ... |
160-269 |
8.73e-08 |
|
DEXS-box helicase domain of RecD and similar proteins; RecD is a member of the RecBCD (EC 3.1.11.5, Exonuclease V) complex. It is the alpha chain of the complex and functions as a 3'-5' helicase. The RecBCD enzyme is both a helicase that unwinds, or separates the strands of DNA, and a nuclease that makes single-stranded nicks in DNA. RecD is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350691 [Multi-domain] Cd Length: 155 Bit Score: 51.02 E-value: 8.73e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504312661 160 VILVVGVNGTGKTTTIGKLAKKYKSEGKSVMLAAAdTFRAAgieqlQILGKLNNI--SVIAQHFGSDPAAVIFDAVKSAK 237
Cdd:cd17933 14 VSVLTGGAGTGKTTTLKALLAALEAEGKRVVLAAP-TGKAA-----KRLSESTGIeaSTIHRLLGINPGGGGFYYNEENP 87
|
90 100 110
....*....|....*....|....*....|....
gi 504312661 238 SKKiDILIIDTAGRLHNKI--HLIEELKKIVRVI 269
Cdd:cd17933 88 LDA-DLLIVDEASMVDTRLmaALLSAIPAGARLI 120
|
|
| SRP54_N |
smart00963 |
SRP54-type protein, helical bundle domain; This entry represents the N-terminal helical bundle ... |
72-144 |
1.18e-07 |
|
SRP54-type protein, helical bundle domain; This entry represents the N-terminal helical bundle domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species.
Pssm-ID: 214941 [Multi-domain] Cd Length: 77 Bit Score: 48.70 E-value: 1.18e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 504312661 72 KQLLHNGINNIFLSKTIDDVLFEELEEKMLLADIGIDTSNRIISNLIKDVNR---QDLKSSEKLYFLLKKNMYNIL 144
Cdd:smart00963 2 SKALGKLLGELFLTEKDDEELLEELEEALLEADVGVEVVKEIIERVKEKAKGevlKGLTPKQEVKKILKEELVKIL 77
|
|
| RecD |
COG0507 |
ATPase/5#-3# helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V) ... |
160-247 |
2.70e-06 |
|
ATPase/5#-3# helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V) [Replication, recombination and repair];
Pssm-ID: 440273 [Multi-domain] Cd Length: 514 Bit Score: 49.20 E-value: 2.70e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504312661 160 VILVVGVNGTGKTTTIGKLAKKYKSEGKSVMLAAAdTFRAAgieqlQILGKLNNISV--IAQHFGSDPAAVIFDAVKSAK 237
Cdd:COG0507 142 VSVLTGGAGTGKTTTLRALLAALEALGLRVALAAP-TGKAA-----KRLSESTGIEArtIHRLLGLRPDSGRFRHNRDNP 215
|
90
....*....|
gi 504312661 238 SKKIDILIID 247
Cdd:COG0507 216 LTPADLLVVD 225
|
|
| AAA_30 |
pfam13604 |
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA ... |
160-250 |
1.21e-05 |
|
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. There is a Walker A and Walker B.
Pssm-ID: 433343 [Multi-domain] Cd Length: 191 Bit Score: 45.63 E-value: 1.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504312661 160 VILVVGVNGTGKTTTIGKLAKKYKSEGKSVmLAAADTFRAAgieqlQILGKLNNI--SVIAQHFGSDPAAVIFDAVksak 237
Cdd:pfam13604 20 VAVLVGPAGTGKTTALKALREAWEAAGYRV-IGLAPTGRAA-----KVLGEELGIpaDTIAKLLHRLGGRAGLDPG---- 89
|
90
....*....|...
gi 504312661 238 skkiDILIIDTAG 250
Cdd:pfam13604 90 ----TLLIVDEAG 98
|
|
| flhF |
PRK06995 |
flagellar biosynthesis protein FlhF; |
164-339 |
1.21e-05 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235904 [Multi-domain] Cd Length: 484 Bit Score: 46.88 E-value: 1.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504312661 164 VGVNGTGKTTTIGKLAKKY--KSEGKSVMLAAADTFRAAGIEQLQILGKLNNISViaqHfgsdpaavifdAVKSAKSKKI 241
Cdd:PRK06995 262 MGPTGVGKTTTTAKLAARCvmRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPV---H-----------AVKDAADLRL 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504312661 242 --------DILIIDTAG-----RLHNKihLIEELKKIVRVIKKLdisapheimLIIDACNGQNTIKQTEIFHRALNLTGI 308
Cdd:PRK06995 328 alselrnkHIVLIDTIGmsqrdRMVSE--QIAMLHGAGAPVKRL---------LLLNATSHGDTLNEVVQAYRGPGLAGC 396
|
170 180 190
....*....|....*....|....*....|.
gi 504312661 309 VITKLDGTAKGGVIFSLADQFKIPIRYIGIG 339
Cdd:PRK06995 397 ILTKLDEAASLGGALDVVIRYKLPLHYVSNG 427
|
|
| ExeA |
COG3267 |
Type II secretory pathway ATPase component GspA/ExeA/MshM [Intracellular trafficking, ... |
153-263 |
2.72e-03 |
|
Type II secretory pathway ATPase component GspA/ExeA/MshM [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 442498 [Multi-domain] Cd Length: 261 Bit Score: 39.00 E-value: 2.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504312661 153 ISKHQPFvILVVGVNGTGKTTTIGKLAKKYKSEGKSVMLA-----AADTFRAagieqlqilgklnnisvIAQHFGSDPA- 226
Cdd:COG3267 39 LAQGGGF-VVLTGEVGTGKTTLLRRLLERLPDDVKVAYIPnpqlsPAELLRA-----------------IADELGLEPKg 100
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 504312661 227 ---AVIFDAV-----KSAKSKKIDILIIDTAgrlHN-KIHLIEELK 263
Cdd:COG3267 101 askADLLRQLqefllELAAAGRRVVLIIDEA---QNlPPETLEELR 143
|
|
| SRP54_N |
pfam02881 |
SRP54-type protein, helical bundle domain; |
79-137 |
2.77e-03 |
|
SRP54-type protein, helical bundle domain;
Pssm-ID: 460734 [Multi-domain] Cd Length: 75 Bit Score: 36.29 E-value: 2.77e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 504312661 79 INNIFLSKTIDDVLFEE----LEEKMLLADIGIDTSNRIISNLIKD-VNRQDLKSSEKLYFLLK 137
Cdd:pfam02881 9 FKGLRGKGKIDEEDLEEalkeLEEALLEADVGVEVVKKIIERLREKaVGEKKLKPPQEVKKILK 72
|
|
| AAA_16 |
pfam13191 |
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the ... |
153-285 |
5.43e-03 |
|
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily.
Pssm-ID: 433025 [Multi-domain] Cd Length: 167 Bit Score: 37.48 E-value: 5.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504312661 153 ISKHQPFVILVVGVNGTGKTTTIGKLAKKYKSEGKSVMLAAADTFraagIEQLQILGKLNNISVIAQhFGSDPAAVIFDA 232
Cdd:pfam13191 19 VRSGRPPSVLLTGEAGTGKTTLLRELLRALERDGGYFLRGKCDEN----LPYSPLLEALTREGLLRQ-LLDELESSLLEA 93
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 504312661 233 vksAKSKKIDILIIDTAGRLHNKIHLIEELKKIVRVIKKLDisapHEIMLIID 285
Cdd:pfam13191 94 ---WRAALLEALAPVPELPGDLAERLLDLLLRLLDLLARGE----RPLVLVLD 139
|
|
| |
