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Conserved domains on  [gi|504085983|ref|WP_014319977|]
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MULTISPECIES: ABC transporter permease [Corynebacterium]

Protein Classification

ABC transporter permease( domain architecture ID 11439449)

ABC transporter permease is the transmembrane (TM) subunit in a periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporter which generally binds a type 2 PBP; similar to the permease subunit of ABC-type dipeptide/oligopeptide/nickel transport systems

Gene Ontology:  GO:0140359|GO:0042626
PubMed:  25750732|24638992
TCDB:  3.A.1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DppC COG1173
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 35-311 2.40e-110

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


:

Pssm-ID: 440786 [Multi-domain]  Cd Length: 275  Bit Score: 321.29  E-value: 2.40e-110
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504085983  35 PTSMWGEAWTYLRRRPLFWVSAALIFLALLMAIVPQLFTSTDPQFCELGKSLAKPAPGHPFGFDRQGCDIYSRMIYGARA 114
Cdd:COG1173    1 PRSRWRRAWRRLRRNPLAVIGLVILLLLVLLALFAPLLAPYDPTAQDLAARLQPPSAAHWLGTDQLGRDVLSRLLYGARI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504085983 115 SVAVGVLTTIAVVLIGTAIGSAAGYIGGFLDTLLSRLTDIFFAVPLVLAAIVVMQMFkeSRSIITVVVVLALFGWTNIAR 194
Cdd:COG1173   81 SLLVGLLAVLIALVIGVLLGLLAGYFGGWVDAVLMRLVDVLLAFPSLLLAIALVAVL--GPGLLNVILALGLTGWPGYAR 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504085983 195 ITRGAVLSTKNEEFVTAARAVGASRWRILTTHVLPNSAAPIIVYATVALGTFIVAEATLSFLGIGLPPSIVSWGGDIAKA 274
Cdd:COG1173  159 LVRAQVLSLREREYVEAARALGASPLRIIFRHILPNVLPPLIVQATLGIASAILAEAGLSFLGLGVQPPTPSWGTMLSEG 238

                        250       260       270
                 ....*....|....*....|....*....|....*..
gi 504085983 275 QASLRTQPMVLFYPAVALGLTVLSFIMMGDAVRDALD 311
Cdd:COG1173  239 RNYLLTAPWLALFPGLAIVLTVLAFNLLGDGLRDALD 275
 
Name Accession Description Interval E-value
DppC COG1173
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 35-311 2.40e-110

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440786 [Multi-domain]  Cd Length: 275  Bit Score: 321.29  E-value: 2.40e-110
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504085983  35 PTSMWGEAWTYLRRRPLFWVSAALIFLALLMAIVPQLFTSTDPQFCELGKSLAKPAPGHPFGFDRQGCDIYSRMIYGARA 114
Cdd:COG1173    1 PRSRWRRAWRRLRRNPLAVIGLVILLLLVLLALFAPLLAPYDPTAQDLAARLQPPSAAHWLGTDQLGRDVLSRLLYGARI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504085983 115 SVAVGVLTTIAVVLIGTAIGSAAGYIGGFLDTLLSRLTDIFFAVPLVLAAIVVMQMFkeSRSIITVVVVLALFGWTNIAR 194
Cdd:COG1173   81 SLLVGLLAVLIALVIGVLLGLLAGYFGGWVDAVLMRLVDVLLAFPSLLLAIALVAVL--GPGLLNVILALGLTGWPGYAR 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504085983 195 ITRGAVLSTKNEEFVTAARAVGASRWRILTTHVLPNSAAPIIVYATVALGTFIVAEATLSFLGIGLPPSIVSWGGDIAKA 274
Cdd:COG1173  159 LVRAQVLSLREREYVEAARALGASPLRIIFRHILPNVLPPLIVQATLGIASAILAEAGLSFLGLGVQPPTPSWGTMLSEG 238

                        250       260       270
                 ....*....|....*....|....*....|....*..
gi 504085983 275 QASLRTQPMVLFYPAVALGLTVLSFIMMGDAVRDALD 311
Cdd:COG1173  239 RNYLLTAPWLALFPGLAIVLTVLAFNLLGDGLRDALD 275
PRK15082 PRK15082
glutathione ABC transporter permease GsiD; Provisional
 39-313 1.25e-60

glutathione ABC transporter permease GsiD; Provisional


Pssm-ID: 185040 [Multi-domain]  Cd Length: 301  Bit Score: 195.33  E-value: 1.25e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504085983  39 WGEAWTYLRRRPLFWVSAALIFLALLMAIVPQLFTSTDPQ-FCELGKSLAKPAPGHPFGFDRQGCDIYSRMIYGARASVA 117
Cdd:PRK15082  25 WHEFWRRFRRQHVALVAGLFVLLLIVVAIFAPWIAPYDAEnYFDYDALNAGPSLQHWFGVDSLGRDIFSRILVGARISLA 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504085983 118 VGVLTTIAVVLIGTAIGSAAGYIGGFLDTLLSRLTDIFFAVPLVLAAIVVMQMFkeSRSIITVVVVLALFGWTNIARITR 197
Cdd:PRK15082 105 AGFFSVAIGAAIGTVLGLLAGYYEGWWDRIIMRICDVLFAFPGILLAIAVVAIL--GSGMANVIIAVAIFSIPAFARLVR 182

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504085983 198 GAVLSTKNEEFVTAARAVGASRWRILTTHVLPNSAAPIIVYATVALGTFIVAEATLSFLGIGLPPSIVSWGGDIAKAQAS 277
Cdd:PRK15082 183 GNTLVLKQQTYIESARSIGASDWTILLRHILPGTVSSIVVYFTMRIGTSIITAASLSFLGLGAQPPTPEWGAMLNEARAD 262

                        250       260       270
                 ....*....|....*....|....*....|....*.
gi 504085983 278 LRTQPMVLFYPAVALGLTVLSFIMMGDAVRDALDPK 313
Cdd:PRK15082 263 MVIAPHVALFPSLAIFLTVLAFNLLGDGLRDALDPK 298
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 130-316 3.82e-20

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 85.81  E-value: 3.82e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504085983  130 GTAIGS-AAGYIGGFLDTLLSRLTDIFFAVP-LVLAAIVVMQMFKES-RSIITVVVVLALFGWTNIARITRGAVLSTKNE 206
Cdd:pfam00528   1 GIPLGIiAALRRGRRLDRLLRPLIDLLQALPsFVLAILLVVIAILSIlGHGILPAIILALLGWAGYARLIRRAALRSLPS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504085983  207 EFVTAARAVGASRWRILTTHVLPNSAAPIIVYATVALGTFIVAEATLSFL----GIGLPPSIVSWGGDIAKAQAslrtqp 282
Cdd:pfam00528  81 DLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLgswpGLGLLLIEAILGYDYPEIQG------ 154

                         170       180       190
                  ....*....|....*....|....*....|....
gi 504085983  283 mvlfyPAVALGLTVLSFIMMGDAVRDALDPKSRK 316
Cdd:pfam00528 155 -----PVLAAALILLLLNLLVDILQRLLDPRVRK 183
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 112-300 6.91e-20

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 85.41  E-value: 6.91e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504085983 112 ARASVAVGVLTTIAVVLIGTAIGSAAGYIGGFLDTLLSRLTDIFFAVPLVLAAIVVMQMFKE------SRSIITVVVVLA 185
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVllgwgiLPGLGLPALILA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504085983 186 LFGWTNIARITRGAVLSTKNEEFVTAARAVGASRWRILTTHVLPNSAAPIIVYATVALGTFIVAEATLSFLGIGLPPSIV 265
Cdd:cd06261   81 LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPG 160

                        170       180       190
                 ....*....|....*....|....*....|....*
gi 504085983 266 SWggdiaKAQASLRTQPMVLFYPAVALGLTVLSFI 300
Cdd:cd06261  161 TG-----LLLIFAILFPGDLGVAAAVALILLLLSL 190
 
Name Accession Description Interval E-value
DppC COG1173
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 35-311 2.40e-110

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440786 [Multi-domain]  Cd Length: 275  Bit Score: 321.29  E-value: 2.40e-110
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504085983  35 PTSMWGEAWTYLRRRPLFWVSAALIFLALLMAIVPQLFTSTDPQFCELGKSLAKPAPGHPFGFDRQGCDIYSRMIYGARA 114
Cdd:COG1173    1 PRSRWRRAWRRLRRNPLAVIGLVILLLLVLLALFAPLLAPYDPTAQDLAARLQPPSAAHWLGTDQLGRDVLSRLLYGARI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504085983 115 SVAVGVLTTIAVVLIGTAIGSAAGYIGGFLDTLLSRLTDIFFAVPLVLAAIVVMQMFkeSRSIITVVVVLALFGWTNIAR 194
Cdd:COG1173   81 SLLVGLLAVLIALVIGVLLGLLAGYFGGWVDAVLMRLVDVLLAFPSLLLAIALVAVL--GPGLLNVILALGLTGWPGYAR 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504085983 195 ITRGAVLSTKNEEFVTAARAVGASRWRILTTHVLPNSAAPIIVYATVALGTFIVAEATLSFLGIGLPPSIVSWGGDIAKA 274
Cdd:COG1173  159 LVRAQVLSLREREYVEAARALGASPLRIIFRHILPNVLPPLIVQATLGIASAILAEAGLSFLGLGVQPPTPSWGTMLSEG 238

                        250       260       270
                 ....*....|....*....|....*....|....*..
gi 504085983 275 QASLRTQPMVLFYPAVALGLTVLSFIMMGDAVRDALD 311
Cdd:COG1173  239 RNYLLTAPWLALFPGLAIVLTVLAFNLLGDGLRDALD 275
PRK15082 PRK15082
glutathione ABC transporter permease GsiD; Provisional
 39-313 1.25e-60

glutathione ABC transporter permease GsiD; Provisional


Pssm-ID: 185040 [Multi-domain]  Cd Length: 301  Bit Score: 195.33  E-value: 1.25e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504085983  39 WGEAWTYLRRRPLFWVSAALIFLALLMAIVPQLFTSTDPQ-FCELGKSLAKPAPGHPFGFDRQGCDIYSRMIYGARASVA 117
Cdd:PRK15082  25 WHEFWRRFRRQHVALVAGLFVLLLIVVAIFAPWIAPYDAEnYFDYDALNAGPSLQHWFGVDSLGRDIFSRILVGARISLA 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504085983 118 VGVLTTIAVVLIGTAIGSAAGYIGGFLDTLLSRLTDIFFAVPLVLAAIVVMQMFkeSRSIITVVVVLALFGWTNIARITR 197
Cdd:PRK15082 105 AGFFSVAIGAAIGTVLGLLAGYYEGWWDRIIMRICDVLFAFPGILLAIAVVAIL--GSGMANVIIAVAIFSIPAFARLVR 182

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504085983 198 GAVLSTKNEEFVTAARAVGASRWRILTTHVLPNSAAPIIVYATVALGTFIVAEATLSFLGIGLPPSIVSWGGDIAKAQAS 277
Cdd:PRK15082 183 GNTLVLKQQTYIESARSIGASDWTILLRHILPGTVSSIVVYFTMRIGTSIITAASLSFLGLGAQPPTPEWGAMLNEARAD 262

                        250       260       270
                 ....*....|....*....|....*....|....*.
gi 504085983 278 LRTQPMVLFYPAVALGLTVLSFIMMGDAVRDALDPK 313
Cdd:PRK15082 263 MVIAPHVALFPSLAIFLTVLAFNLLGDGLRDALDPK 298
nikC PRK10417
nickel transporter permease NikC; Provisional
 47-315 7.03e-59

nickel transporter permease NikC; Provisional


Pssm-ID: 236687 [Multi-domain]  Cd Length: 272  Bit Score: 189.88  E-value: 7.03e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504085983  47 RRRPLFWVSAALIFLALLMAIVPQLFTSTDPQFCELGKSLAKPAPGHPFGFDRQGCDIYSRMIYGARASVAVGVLTTIAV 126
Cdd:PRK10417   1 SSRWSVRLALIIIALLALIALTSQWWLPYDPQAIDLPSRLLSPDAQHWLGTDHLGRDIFSRLMAGTRVSLGSVMACLLLV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504085983 127 VLIGTAIGSAAGYIGGFLDTLLSRLTDIFFAVPLVLAAIVVMQMFkeSRSIITVVVVLALFGWTNIARITRGAVLSTKNE 206
Cdd:PRK10417  81 LALGLVIGGSAGLLGGRVDQATMRVADMFMTFPTSILAFFMVGVL--GTGLTNVIIAIALSHWAWYARMVRSLVISLRQR 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504085983 207 EFVTAARAVGASRWRILTTHVLPNSAAPIIVYATVALGTFIVAEATLSFLGIGLPPSIVSWGGDIAKAQASLRTQPMVLF 286
Cdd:PRK10417 159 EFVLAARLSGAGHVRVFIDHLLPAVIPQLLVLATLDIGHMMLHVAGLSFLGLGVTAPTAEWGVMINDARQYIWTQPLLMF 238

                        250       260
                 ....*....|....*....|....*....
gi 504085983 287 YPAVALGLTVLSFIMMGDAVRDALDPKSR 315
Cdd:PRK10417 239 WPGLALFISVMAFNLLGDALRDHLDPHLV 267
PRK09881 PRK09881
D,D-dipeptide ABC transporter permease;
33-317 7.52e-53

D,D-dipeptide ABC transporter permease;


Pssm-ID: 182131 [Multi-domain]  Cd Length: 296  Bit Score: 175.39  E-value: 7.52e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504085983  33 SAPTSMWGEAWTY-LRRRPLFWVSAALIFLALLMAIVPQLFTSTDPQFCELGKSLAKPAPGHPFGFDRQGCDIYSRMIYG 111
Cdd:PRK09881  13 QKQTRFNGAKLVWmLKGSPLTVTGAVIIVLMLLMMIFSPWLATHDPNAIDLTARLLPPSAAHWFGTDEVGRDLFSRVLVG 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504085983 112 ARASVAVGVLTTIAVVLIGTAIGSAAGYIGGFLDTLLSRLTDIFFAVP-LVLAAIVVMQMfkeSRSIITVVVVLALFGWT 190
Cdd:PRK09881  93 SQQSILAGLVVVAIAGMIGSLLGCLSGVLGGRADAIIMRIMDIMLSIPsLVLTMALAAAL---GPSLFNAMLAIAIVRIP 169

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504085983 191 NIARITRGAVLSTKNEEFVTAARAVGASRWRILTTHVLPNSAAPIIVYATVALGTFIVAEATLSFLGIGLPPSIVSWGGD 270
Cdd:PRK09881 170 FYVRLARGQALVVRQYTYVQAAKTFGASRWHLISWHILRNSLPPLIVQASLDIGSAILMAATLGFIGLGAQQPSAEWGAM 249

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*..
gi 504085983 271 IAKAQASLRTQPMVLFYPAVALGLTVLSFIMMGDAVRDALDPKSRKR 317
Cdd:PRK09881 250 VANGRNYVLDQWWYCAFPGAAILLTAVGFNLFGDGIRDLLDPKAGGK 296
YejE COG4239
ABC-type microcin C transport system, permease component YejE [Secondary metabolites ...
 87-317 6.70e-47

ABC-type microcin C transport system, permease component YejE [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 443381 [Multi-domain]  Cd Length: 342  Bit Score: 161.09  E-value: 6.70e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504085983  87 AKPAPGHPFGFDRQGCDIYSRMIYGARASVAVGVLTTIAVVLIGTAIGSAAGYIGGFLDTLLSRLTDIFFAVPLVLAAIV 166
Cdd:COG4239  115 SPPSAENWLGTDDQGRDVLARLIYGFRISVLFGLALTVISSVIGVAAGAVQGYFGGRVDLLFQRFIEIWSSMPELYLLII 194

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504085983 167 VMQMFKesRSIITVVVVLALFGWTNIARITRGAVLSTKNEEFVTAARAVGASRWRILTTHVLPNSAAPIIVYATVALGTF 246
Cdd:COG4239  195 LSSIFQ--PSFWLLLGILLLFGWMGLVGVVRAEFLRARNLEYVRAARALGVSDRRIMFRHILPNAMVATLTFLPFILSGA 272

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 504085983 247 IVAEATLSFLGIGLPPSIVSWGGDIAKAQASLRTQPMVLF-YPAVALGLTVLSFImmGDAVRDALDPKSRKR 317
Cdd:COG4239  273 ITTLTSLDFLGFGLPPGSPSLGELLAQGKNNLQAPWLGLSaFVVLALMLSLLVFI--GEAVRDAFDPRKTFR 342
PRK15406 PRK15406
oligopeptide ABC transporter permease OppC; Provisional
 37-315 1.27e-45

oligopeptide ABC transporter permease OppC; Provisional


Pssm-ID: 185304 [Multi-domain]  Cd Length: 302  Bit Score: 156.53  E-value: 1.27e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504085983  37 SMWGEAwtylrRRPLFWVSAALIFLALLMAIVpqLFTSTDPQFCEL-------GKSLAKP--APGHPFGFDRQGCDIYSR 107
Cdd:PRK15406  24 SLWQDA-----RRRFMHNRAAVASLIVLVLIA--LFVILAPMLSQFayddtdwGMMSSAPdmESGHYFGTDSSGRDLLVR 96

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504085983 108 MIYGARASVAVGVLTTIAVVLIGTAIGSAAGYIGGFLDTLLSRLTDIFFAVPLVLAAIVVMQMFkeSRSIITVVVVLALF 187
Cdd:PRK15406  97 VAIGGRISLMVGVAAALVAVVVGTLYGSLSGYLGGKVDSVMMRLLEILNSFPFMFFVILLVTFF--GQNILLIFVAIGMV 174

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504085983 188 GWTNIARITRGAVLSTKNEEFVTAARAVGASRWRILTTHVLPNSAAPIIVYATVALGTFIVAEATLSFLGIGLPPSIVSW 267
Cdd:PRK15406 175 SWLDMARIVRGQTLSLKRKEFIEAAQVGGVSTRGIVLRHIVPNVLGVVVVYASLLVPSMILFESFLSFLGLGTQEPLSSW 254

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*...
gi 504085983 268 GGDIAKAQASLRTQPMVLFYPAVALGLTVLSFIMMGDAVRDALDPKSR 315
Cdd:PRK15406 255 GALLSDGANSMEVSPWLLLFPAGFLVVTLFCFNFIGDGLRDALDPKDR 302
PRK10913 PRK10913
dipeptide ABC transporter permease DppC;
25-313 2.64e-45

dipeptide ABC transporter permease DppC;


Pssm-ID: 182833 [Multi-domain]  Cd Length: 300  Bit Score: 155.71  E-value: 2.64e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504085983  25 AVDAVADESAPTSM--WGEAWTYLRRRPLFWVSAALIFLALLMAIVPQLFTSTDP--QFCElgkSLAKPAP-------GH 93
Cdd:PRK10913   3 QVTENKVISAPVPMtpLQEFWHYFKRNKGAVVGLVYVVIMLFIAIFANWIAPHNPaeQFRD---ALLAPPVwqeggswAH 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504085983  94 PFGFDRQGCDIYSRMIYGARASVAVGVLTTIAVVLIGTAIGSAAGYIGGFLDTLLSRLTDIFFAVPLVLAAIVVMQMFke 173
Cdd:PRK10913  80 ILGTDDVGRDVLSRLMYGARLSLLVGCLVVVLSLVMGVILGLIAGYFGGLVDNIIMRVVDIMLALPSLLLALVLVAIF-- 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504085983 174 SRSIITVVVVLALFGWTNIARITRGAVLSTKNEEFVTAARAVGASRWRILTTHVLPNSAAPIIVYATVALGTFIVAEATL 253
Cdd:PRK10913 158 GPSIVNAALALTFVALPHYVRLTRAAVLVEVNRDYVTASRVAGAGAMRQMFINILPNCLAPLIVQASLGFSNAILDMAAL 237

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 504085983 254 SFLGIGLPPSIVSWGGDIAKAQASLRTQPMVLFYPAVALGLTVLSFIMMGDAVRDALDPK 313
Cdd:PRK10913 238 GFLGMGAQPPTPEWGTMLSDVLQFAQSAWWVVTFPGLAILLTVLAFNLMGDGLRDALDPK 297
PRK15021 PRK15021
microcin C ABC transporter permease; Provisional
 88-312 2.27e-29

microcin C ABC transporter permease; Provisional


Pssm-ID: 184982 [Multi-domain]  Cd Length: 341  Bit Score: 114.70  E-value: 2.27e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504085983  88 KPAPGHP-----FGFDRQGCDIYSRMIYGARASVAVGVLTTIAVVLIGTAIGSAAGYIGGFLDTLLSRLTDIFFAVPLVL 162
Cdd:PRK15021 111 KPFPSPPsrqnwLGTDANGGDVLARILYGTRISVLFGLMLTLCSSVMGVLAGALQGYYGGKVDLWGQRFIEVWSGMPTLF 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504085983 163 AAIVVMQMFKESRSIITVVVVLalFGWTNIARITRGAVLSTKNEEFVTAARAVGASRWRILTTHVLPNSAAPIIVYATVA 242
Cdd:PRK15021 191 LIILLSSVVQPNFWWLLAITVL--FGWMSLVGVVRAEFLRTRNFDYIRAAQALGVSDRSIILRHMLPNAMVATLTFLPFI 268

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 504085983 243 LGTFIVAEATLSFLGIGLPPSIVSWGGDIAKAQASLRTQPM-VLFYPAVALGLTVLSFImmGDAVRDALDP 312
Cdd:PRK15021 269 LCSSITTLTSLDFLGFGLPLGSPSLGELLLQGKNNLQAPWLgITAFLSVAILLSLLIFI--GEAVRDAFDP 337
PRK15111 PRK15111
peptide ABC transporter permease SapC;
27-311 8.33e-22

peptide ABC transporter permease SapC;


Pssm-ID: 185066 [Multi-domain]  Cd Length: 296  Bit Score: 93.23  E-value: 8.33e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504085983  27 DAVADESAPTSMWGEAWTYLRRRPL----FWVSAALIFLALLMAIVPQLftSTDPQFceLGKSLAKPAPGHP------FG 96
Cdd:PRK15111   4 DSVYSEKRPPGTLRTAWRKFYSDALamvgLYGCAGLALLCLFGGWLAPY--GIDQQF--LGYQLLPPSWSRYgevsffLG 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504085983  97 FDRQGCDIYSRMIYGARASVAVGVLTTIAVVLIGTAIGSAAGYIGGFLDTLLSRLTDIFFAVPLVLAAIVVMQMFKESRS 176
Cdd:PRK15111  80 TDDLGRDVLSRLLSGAAPTVGGAFVVTLAATLCGLVLGVFAGATHGLRSAVLNHILDTLLSIPSLLLAIIVVAFAGPSLS 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504085983 177 IITVVVVLALFgwTNIARITRGAVLSTKNEEFVTAARAVGASRWRILTTHVLPNSAAPIIVYATVALGTFIVAEATLSFL 256
Cdd:PRK15111 160 HAMFAVWLALL--PRMVRSIYSAVHDELEKEYVIAARLDGASTLNILWYAVLPNITAGLVTEITRALSMAILDIAALGFL 237

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 504085983 257 GIGLPPSIVSWGGDIAKAQASLRTQPMVLFYPAVALGLTVLSFIMMGDAVRDALD 311
Cdd:PRK15111 238 DLGAQLPSPEWGAMLGDSLELIYVAPWTVMLPGAAIMLSVLLVNLLGDGIRRAII 292
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 130-316 3.82e-20

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 85.81  E-value: 3.82e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504085983  130 GTAIGS-AAGYIGGFLDTLLSRLTDIFFAVP-LVLAAIVVMQMFKES-RSIITVVVVLALFGWTNIARITRGAVLSTKNE 206
Cdd:pfam00528   1 GIPLGIiAALRRGRRLDRLLRPLIDLLQALPsFVLAILLVVIAILSIlGHGILPAIILALLGWAGYARLIRRAALRSLPS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504085983  207 EFVTAARAVGASRWRILTTHVLPNSAAPIIVYATVALGTFIVAEATLSFL----GIGLPPSIVSWGGDIAKAQAslrtqp 282
Cdd:pfam00528  81 DLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLgswpGLGLLLIEAILGYDYPEIQG------ 154

                         170       180       190
                  ....*....|....*....|....*....|....
gi 504085983  283 mvlfyPAVALGLTVLSFIMMGDAVRDALDPKSRK 316
Cdd:pfam00528 155 -----PVLAAALILLLLNLLVDILQRLLDPRVRK 183
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 112-300 6.91e-20

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 85.41  E-value: 6.91e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504085983 112 ARASVAVGVLTTIAVVLIGTAIGSAAGYIGGFLDTLLSRLTDIFFAVPLVLAAIVVMQMFKE------SRSIITVVVVLA 185
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVllgwgiLPGLGLPALILA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504085983 186 LFGWTNIARITRGAVLSTKNEEFVTAARAVGASRWRILTTHVLPNSAAPIIVYATVALGTFIVAEATLSFLGIGLPPSIV 265
Cdd:cd06261   81 LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPG 160

                        170       180       190
                 ....*....|....*....|....*....|....*
gi 504085983 266 SWggdiaKAQASLRTQPMVLFYPAVALGLTVLSFI 300
Cdd:cd06261  161 TG-----LLLIFAILFPGDLGVAAAVALILLLLSL 190
DppB COG0601
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 114-259 2.65e-16

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440366 [Multi-domain]  Cd Length: 314  Bit Score: 77.80  E-value: 2.65e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504085983 114 ASVAVGVLTTIAVVLIGTAIGSAAGYI-GGFLDTLLSRLTDIFFAVPLVLAAIVVMQMF-------------------KE 173
Cdd:COG0601   97 VTLELALLALLLALLIGIPLGILAALRrGSWLDRLITVLALLGISIPSFWLGLLLILLFavklgwlpvsgrvspwedfLD 176

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504085983 174 S-RSIITVVVVLALFGWTNIARITRGAVLSTKNEEFVTAARAVGASRWRILTTHVLPNSAAPIIVYATVALGTFI----V 248
Cdd:COG0601  177 AlRHLILPALTLALGSLAGIARLTRSSMLEVLGQDYVRTARAKGLSERRVLLRHALRNALIPVVTVLGLQLGGLLggavV 256

                        170
                 ....*....|.
gi 504085983 249 AEATLSFLGIG 259
Cdd:COG0601  257 VETVFSWPGLG 267
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 120-259 1.34e-05

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 45.52  E-value: 1.34e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504085983 120 VLTTIAVVLIGTAIGSAAGYIGGFL-------DTLLSRLTDIFFAVPLVLAAIVVMQMFKESR-SIITVVVVLALFgwtN 191
Cdd:COG0600   63 LLASLLRVLLGFALAALLGVPLGLLlglsrllRRLLDPLLVFLRPIPPLALAPLLILWFGIGEaSKIFVIFLGAFF---P 139

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 504085983 192 IARITRGAVLSTkNEEFVTAARAVGASRWRILTTHVLPNSAAPIIVYATVALG----TFIVAEATLSFLGIG 259
Cdd:COG0600  140 ILLNTAAGVRSV-DPELLELARSLGASRWQILRKVVLPAALPYIFTGLRIALGlawiGLVVAELLGASSGLG 210
OppC_N pfam12911
N-terminal TM domain of oligopeptide transport permease C; Oligopeptide permeases (Opp) have ...
 37-89 5.18e-05

N-terminal TM domain of oligopeptide transport permease C; Oligopeptide permeases (Opp) have been identified in numerous gram-negative and -positive bacteria. These transport systems belong to the superfamily of highly conserved ATP-binding cassette transporters. Typically, Opp importers comprise a complex of five proteins. The oligopeptide-binding protein OppA is responsible for the capture of peptides from the external medium. Two integral highly hydrophobic membrane spanning proteins, OppB and OppC, form a channel through the membrane used for peptide translocation. This N-terminal domain appears to be the first TM domain of the molecule.


Pssm-ID: 463747 [Multi-domain]  Cd Length: 53  Bit Score: 40.09  E-value: 5.18e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 504085983   37 SMWGEAWTYLRRRPLFWVSAALIFLALLMAIVPQLFTSTDPQFCELGKSLAKP 89
Cdd:pfam12911   1 SPWQDAWRRFRRNKLAMVGLVILLLLVLLAIFAPLLAPYDPDQQDLSADLLPP 53
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 106-236 9.29e-05

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 43.18  E-value: 9.29e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504085983 106 SRMIYGARASVAVGVLTTIAVVLIGTAIGSAAGYIGGFLDTLLSRLTDIFFAVPLVLAAIVVMQMFKE---SRSIITVVV 182
Cdd:COG1177   57 PRLLDALLNSLLIALLSTLLATVLGTPAALALARYRFRGRRLLLALLLLPLVVPGIVLGVALLLLFSAlglSGGLWGLIL 136

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 504085983 183 VLALFGWTNIARITRgAVLSTKNEEFVTAARAVGASRWRILTTHVLPNSAAPII 236
Cdd:COG1177  137 AHVVFTLPFVVLVVL-ARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGIL 189
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
47-261 1.25e-04

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 43.61  E-value: 1.25e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504085983  47 RRRPLFWVSAALIFLALLMAIVPQLFTSTDPQFCELGKSLAKPAPGHPFGFdrqgcdiysrmiygaraSVAVGVLTTIAV 126
Cdd:COG1178    8 RPRLLLLLLALLLALLVLLPLLALLLRAFTDGLANFWALLSDPYLWRALGN-----------------TLLLALLVTLLS 70

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504085983 127 VLIGTAIGSAAGYIGGFLDTLLSRLTDIFFAVPLVLAAIVVMQMFKES------------------RSIITVVVVLALFG 188
Cdd:COG1178   71 LLLGVPLAWLLARTDFPGRRLLRWLLLLPLALPPYVVALAWIALFGPNgllntllralfgleppdiYGLGGIILVLVLFN 150

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 504085983 189 WTNIARITRGAvLSTKNEEFVTAARAVGASRWRILTTHVLPnSAAPIIVYATVALGTFIVAE-ATLSFLGIGLP 261
Cdd:COG1178  151 YPYVYLLLRAA-LRSIDASLEEAARSLGASPWRAFRRVTLP-LLRPAIAAGALLVFLLCLADfGTPLVLGGGYT 222
glnP PRK09494
glutamine ABC transporter permease protein; Reviewed
 111-229 1.43e-04

glutamine ABC transporter permease protein; Reviewed


Pssm-ID: 181907 [Multi-domain]  Cd Length: 219  Bit Score: 42.35  E-value: 1.43e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504085983 111 GARASVAVGVLTTIAVVLIGTAIGSAAGYIGGFLDTL------LSRLTDI-------FFAVPLVLAAIVVMQMfkeSRSI 177
Cdd:PRK09494  18 GAKMTLWISVLGLAGGLVIGLLAGFARAYGGWIANHIalvfieLIRGTPIvvqvmfiYFALPMAFNDLRIDPF---TAAV 94

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 504085983 178 ITVVVVLALFgwtnIARITRGAVLSTkNEEFVTAARAVGASRWRILTTHVLP 229
Cdd:PRK09494  95 VTIMINSGAY----IAEITRGAVLSI-HKGFREAGLALGLSRRETLRYVIGP 141
oppB PRK09471
oligopeptide ABC transporter permease OppB;
177-259 4.09e-04

oligopeptide ABC transporter permease OppB;


Pssm-ID: 181886 [Multi-domain]  Cd Length: 306  Bit Score: 41.59  E-value: 4.09e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504085983 177 IITVVVVLALFGWTNIARITRGAVLSTKNEEFVTAARAVGASRWRILTTHVLPNSAAPIIVYATVALGTFI----VAEAT 252
Cdd:PRK09471 174 MILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRRIILRHALKPALLPVLSYMGPAFVGIItgsmVIETI 253


                 ....*..
gi 504085983 253 LSFLGIG 259
Cdd:PRK09471 254 FGLPGIG 260
PstA COG0581
ABC-type phosphate transport system, permease component [Inorganic ion transport and ...
 120-236 4.24e-04

ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440346 [Multi-domain]  Cd Length: 259  Bit Score: 41.17  E-value: 4.24e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504085983 120 VLTTIAVVLIGTAIGSAAG-YI-----GGFLDTLLSRLTDIFFAVP------LVLAAIVVMqmFKESRSIITVVVVLALF 187
Cdd:COG0581   47 LLLVLLATLIAVPLGVLAAiYLaeyarGGRLARLIRFAIDVLAGVPsivyglFGYALFVLT--LGLGFSLLAGALALALL 124

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 504085983 188 GWTNIARITRGAVLSTKNE--EfvtAARAVGASRWRILTTHVLPNSAAPII 236
Cdd:COG0581  125 MLPVVIRTTEEALRLVPNSlrE---ASYALGATKWQTIRKVVLPAALPGIL 172
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 120-247 5.00e-04

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 41.23  E-value: 5.00e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 504085983 120 VLTTIAVVLIGTAIGSAAGYIggfldtlLSRLTdiFFAVPLVLAAIVVMQMFKESRSIITVVVVLALFGWTN------IA 193
Cdd:COG0395   80 LIVAVVSTVLSLLLSSLAAYA-------LARFR--FRGRKLLFLLILATLMIPGQVLLIPLYLLFRQLGLLNtywgliLP 150

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 504085983 194 RITRGAVLST---KN------EEFVTAARAVGASRWRILTTHVLPNSaAPIIvyATVALGTFI 247
Cdd:COG0395  151 YLAFGLPFGIfllRQffrsipRELEEAARIDGASEFRIFWRIVLPLS-KPAL--ATVAIFTFI 210
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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