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Conserved domains on  [gi|503579389|ref|WP_013813465|]
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MULTISPECIES: flagellar filament capping protein FliD [Serratia]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
fliD super family cl35636
flagellar capping protein; Reviewed
 1-465 0e+00

flagellar capping protein; Reviewed


The actual alignment was detected with superfamily member PRK08032:

Pssm-ID: 236141 [Multi-domain]  Cd Length: 462  Bit Score: 525.41  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503579389   1 MASISSLGIGSGLDLNGLLDKLTKAEQQRLTPYTTQQTSYNAKLTAYGTLKGSLEKFDTLSKDLAKPDFFNNTTA-STHD 79
Cdd:PRK08032   1 MASISSLGVGSGLDLDSLLDSLTAAEKKRLTPITNQQSSYTAKLTAYGTLKSALEKFQTANTALNKADLFSSTKVsSSTT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503579389  80 QFTITTNAKAVPGNYVVEVEQLAQPQTLTTqATISDQTTELGTSGaSGRTISITQGNPAKTVNIPLNDDQTSLLEMRDAI 159
Cdd:PRK08032  81 AFSATTDSGASAGKYTISVTQLAQAQSLTT-ATVSSTKEALGTSD-STRTITITQPGRKEPLEIDLTAGQTSLSGIRDAI 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503579389 160 NGAKAGVSASIMRVGDNKYQLALSSSTTGESNKMSVKVNNDDALNDILSYDSSIPSGAMKQTVPAQDAKIKVNGTEIQRS 239
Cdd:PRK08032 159 NKAEGGVSASIIKVGDGEYRLVLTSKDTGTDNAMTISVEGDSKLNDFLNYDSSTGSGNMTQSVAAQNAKLTVNGIAIERQ 238

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503579389 240 TNTIADALQGVTLDLKTKTKvdEPQNLVISNDKTGSADKIKSWVDSYNSLLDTFNSLSKFTPVKSGEEQSAKNGALLGDN 319
Cdd:PRK08032 239 SNTITDAPEGITLNLKKVTT--GNQTLTITKDTTKAKEAIKDWVDAYNSLQDTFSSLTKYTAVDAGADQSSSNGALLGDS 316

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503579389 320 TLRGIQSSIKSALSSAQDNPELKGLGNLGITTNVKTGKLELDSEKLKKAIDEKPAQVANFFAGNGTDTGMATEIHNEIQN 399
Cdd:PRK08032 317 TLRTIQTQLKSQLANSQSSSDFKTLAQIGITQDPSDGKLEIDDDKLTKALKEDPAGVKALFVGDGKKTGITTQIATNLKS 396

                        410       420       430       440       450       460
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 503579389 400 YIKAGGVLENATKSINTNLDRLNTQITRVTESIQNTIDRYKQQFVQLDTMMSKLNGTSNYLNQQFS 465
Cdd:PRK08032 397 WLSTTGIIKTATDGVNKTLKKLTKQYNAVSDSIDATIARYKAQFTQLDKLMTSLNSTSSYLTQQFE 462
 
Name Accession Description Interval E-value
fliD PRK08032
flagellar capping protein; Reviewed
 1-465 0e+00

flagellar capping protein; Reviewed


Pssm-ID: 236141 [Multi-domain]  Cd Length: 462  Bit Score: 525.41  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503579389   1 MASISSLGIGSGLDLNGLLDKLTKAEQQRLTPYTTQQTSYNAKLTAYGTLKGSLEKFDTLSKDLAKPDFFNNTTA-STHD 79
Cdd:PRK08032   1 MASISSLGVGSGLDLDSLLDSLTAAEKKRLTPITNQQSSYTAKLTAYGTLKSALEKFQTANTALNKADLFSSTKVsSSTT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503579389  80 QFTITTNAKAVPGNYVVEVEQLAQPQTLTTqATISDQTTELGTSGaSGRTISITQGNPAKTVNIPLNDDQTSLLEMRDAI 159
Cdd:PRK08032  81 AFSATTDSGASAGKYTISVTQLAQAQSLTT-ATVSSTKEALGTSD-STRTITITQPGRKEPLEIDLTAGQTSLSGIRDAI 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503579389 160 NGAKAGVSASIMRVGDNKYQLALSSSTTGESNKMSVKVNNDDALNDILSYDSSIPSGAMKQTVPAQDAKIKVNGTEIQRS 239
Cdd:PRK08032 159 NKAEGGVSASIIKVGDGEYRLVLTSKDTGTDNAMTISVEGDSKLNDFLNYDSSTGSGNMTQSVAAQNAKLTVNGIAIERQ 238

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503579389 240 TNTIADALQGVTLDLKTKTKvdEPQNLVISNDKTGSADKIKSWVDSYNSLLDTFNSLSKFTPVKSGEEQSAKNGALLGDN 319
Cdd:PRK08032 239 SNTITDAPEGITLNLKKVTT--GNQTLTITKDTTKAKEAIKDWVDAYNSLQDTFSSLTKYTAVDAGADQSSSNGALLGDS 316

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503579389 320 TLRGIQSSIKSALSSAQDNPELKGLGNLGITTNVKTGKLELDSEKLKKAIDEKPAQVANFFAGNGTDTGMATEIHNEIQN 399
Cdd:PRK08032 317 TLRTIQTQLKSQLANSQSSSDFKTLAQIGITQDPSDGKLEIDDDKLTKALKEDPAGVKALFVGDGKKTGITTQIATNLKS 396

                        410       420       430       440       450       460
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 503579389 400 YIKAGGVLENATKSINTNLDRLNTQITRVTESIQNTIDRYKQQFVQLDTMMSKLNGTSNYLNQQFS 465
Cdd:PRK08032 397 WLSTTGIIKTATDGVNKTLKKLTKQYNAVSDSIDATIARYKAQFTQLDKLMTSLNSTSSYLTQQFE 462
FliD COG1345
Flagellar capping protein FliD [Cell motility];
1-466 6.01e-152

Flagellar capping protein FliD [Cell motility];


Pssm-ID: 440956 [Multi-domain]  Cd Length: 450  Bit Score: 439.66  E-value: 6.01e-152
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503579389   1 MASISSLGIGSGLDLNGLLDKLTKAEQQRLTPYTTQQTSYNAKLTAYGTLKGSLEKFDTLSKDLAKPDFFNNTTAST--H 78
Cdd:COG1345    1 MASISSLGLGSGLDTDSLVSQLMAAERAPLTRLTQQQTSLEAQISAYGTLKSALSSLQDALSALKKSSTFNAKKATSsnE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503579389  79 DQFTITTNAKAVPGNYVVEVEQLAQPQTLTTQAtISDQTTELGTSgasgrTISITQGNpAKTVNIPLnDDQTSLLEMRDA 158
Cdd:COG1345   81 SAVTATATSGAAAGSYSIEVTQLAQAQSLASAA-FASATTTLGTG-----TLTITVGD-GKTVTITI-DANDTLADIADA 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503579389 159 INGAKAGVSASIMRVGDnkYQLALSSSTTGESNKMSVKVNNDDALNDILSYDssiPSGAMKQTVPAQDAKIKVNGTEIQR 238
Cdd:COG1345  153 INAAGAGVTASIVNDGS--YRLVLTSKKTGAANAITVSVSGDGALSALLGFD---PASGMTETQAAQDAKLTVNGITITS 227

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503579389 239 STNTIADALQGVTLDLKTKTkvDEPQNLVISNDKTGSADKIKSWVDSYNSLLDTFNSLSKFTPvksgEEQSAKNGALLGD 318
Cdd:COG1345  228 SSNTFTDAIDGVTLTLKKVT--GGPVTLTVSTDTDAIKKAIKDFVDAYNELIDTINSLTKYTK----DEETAKAGALLGD 301

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503579389 319 NTLRGIQSSIKSALSSAQD-NPELKGLGNLGITTNvKTGKLELDSEKLKKAIDEKPAQVANFFAGNGTDTGMATEIHNEI 397
Cdd:COG1345  302 STLRSLQSQLRSALSSPVSgGGSYKSLSDIGITTD-KDGKLELDETKLDKALAEDPDAVAKLFTGDGKTTGIATRLDDLL 380

                        410       420       430       440       450       460
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 503579389 398 QNYIKAGGVLENATKSINTNLDRLNTQITRVTESIQNTIDRYKQQFVQLDTMMSKLNGTSNYLNQQFSS 466
Cdd:COG1345  381 DSYTGSDGTITSRTDGLNKQLKDLDDQIERLEDRLEAREARYRKQFTALDTAMSQLNSQSSYLTQQLAS 449
FliD_C pfam07195
Flagellar hook-associated protein 2 C-terminus; The flagellar hook-associated protein 2 (HAP2 ...
 224-455 1.05e-59

Flagellar hook-associated protein 2 C-terminus; The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria. This alignment covers the C-terminal region of this family of proteins.


Pssm-ID: 429344 [Multi-domain]  Cd Length: 230  Bit Score: 195.20  E-value: 1.05e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503579389  224 AQDAKIKVNGTEIQRSTNTIADALQGVTLDLKTKTKVDEPqNLVISNDKTGSADKIKSWVDSYNSLLDTFNSLSKFTpvk 303
Cdd:pfam07195   1 AQNAEFTVDGIKVTSSSNTVTDVIDGVTLNLTKTTEGGET-TLSVSTDTDGIKEAIKDFVDAYNELITTINELTSYT--- 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503579389  304 sGEEQSAKNGALLGDNTLRGIQSSIKSALSSAQDNPELKGLGNLGITTNVKTGKLELDSEKLKKAIDEKPAQVANFFAGN 383
Cdd:pfam07195  77 -LDEETKKAGALAGDSTLRSILSQLRSVLSSSVSDGSISSLADIGITTDSDYGTLELDEEKLDKALKENPDSVAELFTGD 155

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 503579389  384 GT--DTGMATEIHNEIQNYIKAG-GVLENATKSINTNLDRLNTQITRVTESIQNTIDRYKQQFVQLDTMMSKLNG 455
Cdd:pfam07195 156 GSrvDTGFAKRLTDLLKSYVGASnGTIAGRSDSLNKQIKRLDKQIEDLDKRLETLEARLTAQFTAMDTAVSKMNA 230
 
Name Accession Description Interval E-value
fliD PRK08032
flagellar capping protein; Reviewed
 1-465 0e+00

flagellar capping protein; Reviewed


Pssm-ID: 236141 [Multi-domain]  Cd Length: 462  Bit Score: 525.41  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503579389   1 MASISSLGIGSGLDLNGLLDKLTKAEQQRLTPYTTQQTSYNAKLTAYGTLKGSLEKFDTLSKDLAKPDFFNNTTA-STHD 79
Cdd:PRK08032   1 MASISSLGVGSGLDLDSLLDSLTAAEKKRLTPITNQQSSYTAKLTAYGTLKSALEKFQTANTALNKADLFSSTKVsSSTT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503579389  80 QFTITTNAKAVPGNYVVEVEQLAQPQTLTTqATISDQTTELGTSGaSGRTISITQGNPAKTVNIPLNDDQTSLLEMRDAI 159
Cdd:PRK08032  81 AFSATTDSGASAGKYTISVTQLAQAQSLTT-ATVSSTKEALGTSD-STRTITITQPGRKEPLEIDLTAGQTSLSGIRDAI 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503579389 160 NGAKAGVSASIMRVGDNKYQLALSSSTTGESNKMSVKVNNDDALNDILSYDSSIPSGAMKQTVPAQDAKIKVNGTEIQRS 239
Cdd:PRK08032 159 NKAEGGVSASIIKVGDGEYRLVLTSKDTGTDNAMTISVEGDSKLNDFLNYDSSTGSGNMTQSVAAQNAKLTVNGIAIERQ 238

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503579389 240 TNTIADALQGVTLDLKTKTKvdEPQNLVISNDKTGSADKIKSWVDSYNSLLDTFNSLSKFTPVKSGEEQSAKNGALLGDN 319
Cdd:PRK08032 239 SNTITDAPEGITLNLKKVTT--GNQTLTITKDTTKAKEAIKDWVDAYNSLQDTFSSLTKYTAVDAGADQSSSNGALLGDS 316

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503579389 320 TLRGIQSSIKSALSSAQDNPELKGLGNLGITTNVKTGKLELDSEKLKKAIDEKPAQVANFFAGNGTDTGMATEIHNEIQN 399
Cdd:PRK08032 317 TLRTIQTQLKSQLANSQSSSDFKTLAQIGITQDPSDGKLEIDDDKLTKALKEDPAGVKALFVGDGKKTGITTQIATNLKS 396

                        410       420       430       440       450       460
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 503579389 400 YIKAGGVLENATKSINTNLDRLNTQITRVTESIQNTIDRYKQQFVQLDTMMSKLNGTSNYLNQQFS 465
Cdd:PRK08032 397 WLSTTGIIKTATDGVNKTLKKLTKQYNAVSDSIDATIARYKAQFTQLDKLMTSLNSTSSYLTQQFE 462
FliD COG1345
Flagellar capping protein FliD [Cell motility];
1-466 6.01e-152

Flagellar capping protein FliD [Cell motility];


Pssm-ID: 440956 [Multi-domain]  Cd Length: 450  Bit Score: 439.66  E-value: 6.01e-152
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503579389   1 MASISSLGIGSGLDLNGLLDKLTKAEQQRLTPYTTQQTSYNAKLTAYGTLKGSLEKFDTLSKDLAKPDFFNNTTAST--H 78
Cdd:COG1345    1 MASISSLGLGSGLDTDSLVSQLMAAERAPLTRLTQQQTSLEAQISAYGTLKSALSSLQDALSALKKSSTFNAKKATSsnE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503579389  79 DQFTITTNAKAVPGNYVVEVEQLAQPQTLTTQAtISDQTTELGTSgasgrTISITQGNpAKTVNIPLnDDQTSLLEMRDA 158
Cdd:COG1345   81 SAVTATATSGAAAGSYSIEVTQLAQAQSLASAA-FASATTTLGTG-----TLTITVGD-GKTVTITI-DANDTLADIADA 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503579389 159 INGAKAGVSASIMRVGDnkYQLALSSSTTGESNKMSVKVNNDDALNDILSYDssiPSGAMKQTVPAQDAKIKVNGTEIQR 238
Cdd:COG1345  153 INAAGAGVTASIVNDGS--YRLVLTSKKTGAANAITVSVSGDGALSALLGFD---PASGMTETQAAQDAKLTVNGITITS 227

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503579389 239 STNTIADALQGVTLDLKTKTkvDEPQNLVISNDKTGSADKIKSWVDSYNSLLDTFNSLSKFTPvksgEEQSAKNGALLGD 318
Cdd:COG1345  228 SSNTFTDAIDGVTLTLKKVT--GGPVTLTVSTDTDAIKKAIKDFVDAYNELIDTINSLTKYTK----DEETAKAGALLGD 301

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503579389 319 NTLRGIQSSIKSALSSAQD-NPELKGLGNLGITTNvKTGKLELDSEKLKKAIDEKPAQVANFFAGNGTDTGMATEIHNEI 397
Cdd:COG1345  302 STLRSLQSQLRSALSSPVSgGGSYKSLSDIGITTD-KDGKLELDETKLDKALAEDPDAVAKLFTGDGKTTGIATRLDDLL 380

                        410       420       430       440       450       460
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 503579389 398 QNYIKAGGVLENATKSINTNLDRLNTQITRVTESIQNTIDRYKQQFVQLDTMMSKLNGTSNYLNQQFSS 466
Cdd:COG1345  381 DSYTGSDGTITSRTDGLNKQLKDLDDQIERLEDRLEAREARYRKQFTALDTAMSQLNSQSSYLTQQLAS 449
FliD_C pfam07195
Flagellar hook-associated protein 2 C-terminus; The flagellar hook-associated protein 2 (HAP2 ...
 224-455 1.05e-59

Flagellar hook-associated protein 2 C-terminus; The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria. This alignment covers the C-terminal region of this family of proteins.


Pssm-ID: 429344 [Multi-domain]  Cd Length: 230  Bit Score: 195.20  E-value: 1.05e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503579389  224 AQDAKIKVNGTEIQRSTNTIADALQGVTLDLKTKTKVDEPqNLVISNDKTGSADKIKSWVDSYNSLLDTFNSLSKFTpvk 303
Cdd:pfam07195   1 AQNAEFTVDGIKVTSSSNTVTDVIDGVTLNLTKTTEGGET-TLSVSTDTDGIKEAIKDFVDAYNELITTINELTSYT--- 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503579389  304 sGEEQSAKNGALLGDNTLRGIQSSIKSALSSAQDNPELKGLGNLGITTNVKTGKLELDSEKLKKAIDEKPAQVANFFAGN 383
Cdd:pfam07195  77 -LDEETKKAGALAGDSTLRSILSQLRSVLSSSVSDGSISSLADIGITTDSDYGTLELDEEKLDKALKENPDSVAELFTGD 155

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 503579389  384 GT--DTGMATEIHNEIQNYIKAG-GVLENATKSINTNLDRLNTQITRVTESIQNTIDRYKQQFVQLDTMMSKLNG 455
Cdd:pfam07195 156 GSrvDTGFAKRLTDLLKSYVGASnGTIAGRSDSLNKQIKRLDKQIEDLDKRLETLEARLTAQFTAMDTAVSKMNA 230
fliD PRK07737
flagellar hook-associated protein 2;
8-464 1.65e-36

flagellar hook-associated protein 2;


Pssm-ID: 236082 [Multi-domain]  Cd Length: 501  Bit Score: 140.71  E-value: 1.65e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503579389   8 GIGSGLDLNGLLDKLTKAEQQRLTPYTTQQTSYNAKLTAYGTLKGSLEKFD-TLSKDLAKPDFFNNTTASTHDQFTITTN 86
Cdd:PRK07737   7 GLASGMDIDDIVSKLMKTERAPLDKLTQKKQTLEWQRDSYREMNTLLKDLDdYIFNNITRQSTYLKKTVTSSNESVVTAT 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503579389  87 AKAVPGNYVVEVeqlaQPQTLTTQATISDQTTELGTSGASGrTISITQGNP----AKTVNIPLnDDQTSLLEMRDAINGA 162
Cdd:PRK07737  87 ASSSAANGSTTM----QVTQLATAATWKSSAKTSFYTGADQ-TLTFNVTNPgettAKTVEISV-KQTDTLDDVISKLNSS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503579389 163 KAGVSA---SIMRVGDNKYQLALSSSTTGESNKMSVKVNND-DALNDILSYDSSIPSGAMKQTVPAQDAKIKVNGTEIQR 238
Cdd:PRK07737 161 DLGVSAfkdKIWNGTEYVETIAITSKATGAGASIQAADGATaSFFSQQLGFTNLDADNELTAKTEGQNAQVTINGLQTER 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503579389 239 STNTIAdaLQGVTLDLKTKTkvDEPQNLVISNDKTGSADKIKSWVDSYNSLLDTFNSLSK------FTPVKSGE------ 306
Cdd:PRK07737 241 TSNTFT--INGVTYTLKNTT--AGTVTLSVATDVDGIFNKIKDFVDKYNELIDKINAKLKeeryrdYPPLTDEQkeamte 316

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503579389 307 ------EQSAKNGALLGDNTLRGIQSSIKSALSS--AQDNPELKGLGNLGITTNVK---TGKLELDSEKLKKAIDEKPAQ 375
Cdd:PRK07737 317 kqielwEEKAKSGLLRGDSILSSALSKMRMDFYTkvEGIDGGFSQLAQIGITTSSNyldGGKLEIDETKLRQKIKENPDA 396

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503579389 376 VANFFAGNGT-----DTGMATEIHNEIQNYI-----KAGGVL-ENATKSINTNLDRLNTQITRVTESIQNTIDRYKQQFV 444
Cdd:PRK07737 397 VYQLFNSGGSssnynEKGIARRLRDTLKETIksieqKAGNTTmTNQQFAIGKDLNQIETQIDRFQDRLKQIEDRYYKKFS 476

                        490       500
                 ....*....|....*....|
gi 503579389 445 QLDTMMSKLNGTSNYLNQQF 464
Cdd:PRK07737 477 AMEKAIQKANEQSMYLMNAL 496
fliD PRK06798
flagellar hook-associated protein 2;
13-453 2.35e-32

flagellar hook-associated protein 2;


Pssm-ID: 180698 [Multi-domain]  Cd Length: 440  Bit Score: 127.97  E-value: 2.35e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503579389  13 LDLNGLLDKLTKAEQQRLTPYTTQQTSYNAKLTAYGTLKGSLEKFDTLSKDLAKpdFFNN---TTASTHDQFTITTNAKA 89
Cdd:PRK06798  22 IDTSNFVELELQALEMKKTPYTNQKQSLTSEKLLYASLKKEFSSFLQTFKDLTT--FKGNekkVTLSQEGYITVQADASA 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503579389  90 VPGNYVVEVEQLAQPQTLTTQAtISDQTTELGTSGasgrTISITqgnpAKTVNIplnDDQTSLLEMRDAINGAKAGVSAS 169
Cdd:PRK06798 100 IAGTYNITVENLAQRHQITSKP-VPDIDAKIGVDE----TIKIN----GKEIKV---TKDMTYKDLINKINSGNYGVSAY 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503579389 170 IMrvGDnkyQLALSSSTTGESNKMSVKVNNDDALNDILSYDSSipSGAMKQTVPAQDAKIKVNGTEIQRSTNTIaDALQG 249
Cdd:PRK06798 168 TL--GN---KIFFTSTTEGEEGSIKFTDGDSGFLEAIGLVQSS--GVAANDITAAENAEYTINGIKGTSATNKI-ETIPG 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503579389 250 VTLDLKTKTKVDEPQNLVISNDKTgSADKIKSWVDSYN---SLLDTFnslskftpvksgeeqSAKNGALLGDNTLRGIQS 326
Cdd:PRK06798 240 VTINLKKETTEPIKLTIQDSNVKD-AANLIKKMVDEYNkavSTVDLF---------------AGKGGALQGSAIMFSINR 303

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503579389 327 SIKSALSSAQDNpelKGLGNLGITTNvKTGKLELDSEKLKKAIDEKPAQVANFFAGNGtdtGMATEIHNEIQNYIKAGGV 406
Cdd:PRK06798 304 AMNNVFTFSQDG---NYLFSFGIQVD-KEGTMKVDEEALKKALKENPDAAKQFFFGIN---GLGKEMEKSLDKIFGDEGI 376

                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|.
gi 503579389 407 LENATKSINTNLDRLNTQITRVT----ESIQNTIDRYKQQFVQLDTMMSKL 453
Cdd:PRK06798 377 IGERSKSIDNRVSKLDLKITDIDtqnkQKQDNIVDKYQKLESTLAALDSQL 427
PRK12765 PRK12765
flagellar filament capping protein FliD;
3-437 4.44e-26

flagellar filament capping protein FliD;


Pssm-ID: 237194 [Multi-domain]  Cd Length: 595  Bit Score: 111.14  E-value: 4.44e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503579389   3 SISSLGIGSGLDLN-GLLDKLTKAEQQ-RLTPYTTQQTSYNAKLTAYGTLKGSLEKFDTLSKDLAKPDFF--NNTTASTH 78
Cdd:PRK12765   5 SLSSLGFGSDGVLSqDTIDKLKEADQKaQIDPITTKIEENTTKQKDLTAIKTLLSNFKTSVSSLADETSYlkRKVSISDN 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503579389  79 DQFTITTNAKAVPGNYVVEVEQLAQPQTLTTQATISDqTTELGTSGASGRTISITQGNPAKTVNIplnDDQTSLLEMRDA 158
Cdd:PRK12765  85 PPASVTVNSGVNLQSMKINVSQLAQKDVYQSKGFAND-SSFVNATLTGETDLTIFSNGKEYTITV---DKSTTYRDLADK 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503579389 159 INGAKAG-VSASIMRVG-DNKYQLALSSSTTGESNKMSV--------KVNNDDALNDILSYDSSIPSGAMKQTVP----- 223
Cdd:PRK12765 161 INEASGGkIQAKILNVGgKNPYRLVLQSKETGADNAISFyagkkdaqSDNDAENIFKSLGWDLDDTSTIDPGKDKkgygi 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503579389 224 ---------AQDAKIKVNGTEIQRSTNTIADALQGVTLDLKTKTKVdepqNLVISNDKTGSADKIKSWVDSYNSLLDTFN 294
Cdd:PRK12765 241 kdaslhiqtAQNAEFTYNGIKITRSSNTIDDLGVGVTLTLNKTGSI----NFDIQQDTEGVTKAVEDLVDAYNNLVTNLN 316

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503579389 295 SLSKFtpvksgEEQSAKNGALLGDNTLRGIQSSIK----SALSSAQDNpELKGLGNLGITTNvKTGKLELDSEKLKKAID 370
Cdd:PRK12765 317 AATSY------NSETGTKGTFQGVSEITSIRSSILadlfSQVVDGTDE-DGKSLQDFGLSLN-SDGTLSFDSSKFEQKVS 388

                        410       420       430       440       450       460
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 503579389 371 EKPAQVANFFAGNgTDTGMATEIHNEIqnyikAGGVLENATKSINTNLDRLNTQITRVTESIQNTID 437
Cdd:PRK12765 389 EDPDSTQSFFSGS-TKYEDISHTGEVV-----KSGSLNIQTGDLTINGKGINFKTLTGKTAEENALN 449
fliD PRK06664
flagellar hook-associated protein FliD; Validated
 224-461 6.77e-25

flagellar hook-associated protein FliD; Validated


Pssm-ID: 235848 [Multi-domain]  Cd Length: 661  Bit Score: 107.93  E-value: 6.77e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503579389 224 AQDAKIKVNGTEIQRSTNTIADALQGVTLDLKTKTkvDEPQNLVISNDKTGSADKIKSWVDSYNSLL------------D 291
Cdd:PRK06664 390 AKDAKIKFDGVEVERDKNEITDLIPGVTLNLHKAS--EDPVTLKIEPDYEKIKNLIIEFVAAYNEVLaeinivtsneksS 467

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503579389 292 TFNSLSKFTPVKSGEEQSaKNGALLGDNTLRGIQSSIKSALSS---AQDNPELKGLGNLGITTN--------VKTGKLEL 360
Cdd:PRK06664 468 IIEELTYLSDEEKEEAYK-NLGLLRGEFTLLRLKSRLKTIISSsypTSDDNAFRMLNQIGISTNsvgssgglIQDGYLEL 546

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503579389 361 DSEKLKKAIDEKPAQVANFFA--GNG---TDTGMATEIHNEIQNYIKAGGVLENATKSINTNLDRLNTQItrvtESIQNT 435
Cdd:PRK06664 547 DEKKLDEVLKENPDSVRELFAfdSNGdavMDNGVAKMLLEYLSPYTQAGGIIYNKVKGLDERIADNNKKI----EEYEKK 622

                        250       260       270
                 ....*....|....*....|....*....|
gi 503579389 436 IDRY----KQQFVQLDTMMSKLNGTSNYLN 461
Cdd:PRK06664 623 LESKerklKGKYLTMDQTVKKMKEQSNYLK 652
FliD_N pfam02465
Flagellar hook-associated protein 2 N-terminus; The flagellar hook-associated protein 2 (HAP2 ...
 11-105 2.16e-22

Flagellar hook-associated protein 2 N-terminus; The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria. This alignment covers the N-terminal region of this family of proteins.


Pssm-ID: 460566 [Multi-domain]  Cd Length: 97  Bit Score: 91.09  E-value: 2.16e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503579389   11 SGLDLNGLLDKLTKAEQQRLTPYTTQQTSYNAKLTAYGTLKGSLEKFDTLSKDLAKPDFFNNTTASTHDQ--FTITTNAK 88
Cdd:pfam02465   1 SGLDTDSIVDQLMAAERAPLDRLEQQKTTLEWKQSAYGELNSKLSSLQSALKALSSSSTFNAKKATSSNEsvVTATASSG 80

                          90
                  ....*....|....*..
gi 503579389   89 AVPGNYVVEVEQLAQPQ 105
Cdd:pfam02465  81 AAAGSYSIEVTQLAQAQ 97
fliD PRK08453
flagellar filament capping protein FliD;
224-461 3.32e-21

flagellar filament capping protein FliD;


Pssm-ID: 181432 [Multi-domain]  Cd Length: 673  Bit Score: 96.83  E-value: 3.32e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503579389 224 AQDAKIKVNGTEIQRSTNTIADALQGVTLDLKTKTKVDEPQNLVISNDKTGSADKIKSWVDSYNSLLDTFNSLSKFtpvk 303
Cdd:PRK08453 432 ASDAKFTYNGVSITRPTNEVNDVISGVNITLEQTTEPNKPAIISVSRDNQAIIDSLKEFVKAYNELIPKLDEDTRY---- 507

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503579389 304 sgEEQSAKNGALLGDNTLRGIQSSIKSALS-SAQDNPELKGLGNLGITTNVKtGKLELDSEKLKKAIDEKPAQVANFFAG 382
Cdd:PRK08453 508 --DADTKIAGIFNGVGDIRSIRSSLNNVFSySVHTDNGVESLMKYGLSLDEK-GVMTLDEAKLSSALNSDPKATQDFFYG 584

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503579389 383 NGTDTGMATEIHNE---------IQNYIKAGGV-LENATKSINTNLDRLNTQITRVTESIQNTIDRYKQQFVQLDTMMSK 452
Cdd:PRK08453 585 SDSKDMGGREIHQEgifskfnqvIANLIDGGNAkLKIYEDSLTRDAKSLTKDKENAQELLKTRYDIMAERFAAYDSQISK 664


                 ....*....
gi 503579389 453 LNGTSNYLN 461
Cdd:PRK08453 665 ANQKFNSVQ 673
fliD PRK08724
flagellar filament capping protein FliD;
216-455 6.09e-20

flagellar filament capping protein FliD;


Pssm-ID: 236335 [Multi-domain]  Cd Length: 673  Bit Score: 93.01  E-value: 6.09e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503579389 216 GAMKQTVPAQDAKIKVNG-TEIQRSTNTIADALQGVTLDLKTKTKVDEPQ-NLVISNDKTGSADKIKSWVDSYNSLLDTF 293
Cdd:PRK08724 430 SGMTEVQSAQDSMVVLDGvAQLSSNNNVIEDAIEGVDLTLKGKTDKNKPPaEIGVEYDRQSVRNDIEQFVAAYNQFYQTS 509

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503579389 294 NSLSKFTPVksgeeqSAKNGALLGDNTLRGIQSSIKSALSSA-QDNPE-LKGLGNLGITTnVKTGKLELDSEKLKKAIDE 371
Cdd:PRK08724 510 KALSGVDPA------TGQKGPLAGDSTVRSADSRLKSVFSSSiEQAPEnLKSLTEFGITT-TRQGTLEINYDMLDRQLNN 582

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503579389 372 KPAQVANFFAGNgtdTGMATEIHNEIQNYIKAGGVLENATKSINTNLDRLNTQ---ITRVTESIQNtidRYKQQFVQLDT 448
Cdd:PRK08724 583 NFNKLEEFFGGN---TGFAKRVEDAIQSMTGVTGSIRTREKSLREQNYRLNDDqvaLDRRMESLEK---RTHAKFAAMQD 656


                 ....*..
gi 503579389 449 MMSKLNG 455
Cdd:PRK08724 657 ATGKMQG 663
fliD PRK08724
flagellar filament capping protein FliD;
3-401 3.07e-14

flagellar filament capping protein FliD;


Pssm-ID: 236335 [Multi-domain]  Cd Length: 673  Bit Score: 74.91  E-value: 3.07e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503579389   3 SISSLGIGSGLDLNGLLDKLTKAE----QQRLtpyTTQQTSYNAKLTAYGTLKGSLEKFDTLSKDLAKPDFFNNTTASTH 78
Cdd:PRK08724   2 SLGPMGMSGGMDINSMVSKIVDAErvpkQQRI---DNERTDIDTSISAYGRLRESLDTMKNLMTNFRQEKAFAVRTVDTS 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503579389  79 DQFTITTNA--KAVPGNYVVEVEQLAQPQTLTtqatiSDQTTELGTSGASGRTISItqGNPAKTVNIPLNDDQTSLLEmr 156
Cdd:PRK08724  79 DEDVVSATAttDAIAGKYAIDVLQLAQSHKVA-----SDVLDEDAKFGPGKLQISL--GDKSFTLDVVGNSKLVDIVR-- 149

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503579389 157 dAINGAKA--GVSASIMRvGDNKYQLALSSSTTGESNKMSVKVNNDDalNDILSYdssipsgamkqtVPAQDAKIKVNGT 234
Cdd:PRK08724 150 -GINGAKSnpGVRASIIN-DVEGPRLILASNVSGKDNQIKISVDAEY--GNPLKR------------FEYKTLEDRVRAL 213

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503579389 235 EIQRStntiadALQGVTLDLKTKTKVDEPQNL-----VISNDKTGSADKIKSWVDSYNSLLDTFNSLSKFTPVKSGEEQS 309
Cdd:PRK08724 214 EKARA------AAQQVIAPLTPEEQKVAPELSdeegnAIPPADQEVAEEIQDAAQIAQQQEATAALAALEEPISAGGATA 287

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503579389 310 AKNGallgdntlrgiQSSIKSALSSAQDNPE--LKGLGNLGITT---NVKTGKLELDSEKLKKAIDEKPAQvaNFFAGNG 384
Cdd:PRK08724 288 AAAG-----------QAAIDAAEAKAYLRPEdrIPGWTETASGTlldSYPEPEEELDEAAIAKAPDVPGWS--NTASGTL 354

                        410
                 ....*....|....*..
gi 503579389 385 TDTGMATEihnEIQNYI 401
Cdd:PRK08724 355 TDSYVTPK---EAQAEI 368
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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