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Conserved domains on  [gi|503532272|ref|WP_013766348|]
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cytochrome c [Haliscomenobacter hydrossis]

Protein Classification

c-type cytochrome( domain architecture ID 10440481)

c-type cytochrome is an electron carrier protein that contains one or more heme groups; such as nitric oxide reductase subunit C

CATH:  1.10.760.10
Gene Ontology:  GO:0020037|GO:0009055|GO:0046872
PubMed:  12594933|10647174|18568041|10395550|31252007|22723177
SCOP:  3000815

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Cytochrom_C pfam00034
Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and ...
 72-162 2.37e-10

Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family.


:

Pssm-ID: 459641 [Multi-domain]  Cd Length: 89  Bit Score: 54.47  E-value: 2.37e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503532272   72 QKGKTIFIANCAACHNKNMRDD-LTGPALGGVKEKWaayPRQDLYKWIRNSQAMIQQKHPRALAlwkdWNPTIMNSFNSL 150
Cdd:pfam00034   1 ARGKKLFAANCAACHGVNGEGAgAGGPDLAGLAARY---PGDALGAIRENKHAIGGGGVDRAGG----PPGTGMPAFDGL 73

                          90
                  ....*....|..
gi 503532272  151 KDDDIDAIFAYV 162
Cdd:pfam00034  74 TDEEIADLVAYL 85
 
Name Accession Description Interval E-value
Cytochrom_C pfam00034
Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and ...
 72-162 2.37e-10

Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family.


Pssm-ID: 459641 [Multi-domain]  Cd Length: 89  Bit Score: 54.47  E-value: 2.37e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503532272   72 QKGKTIFIANCAACHNKNMRDD-LTGPALGGVKEKWaayPRQDLYKWIRNSQAMIQQKHPRALAlwkdWNPTIMNSFNSL 150
Cdd:pfam00034   1 ARGKKLFAANCAACHGVNGEGAgAGGPDLAGLAARY---PGDALGAIRENKHAIGGGGVDRAGG----PPGTGMPAFDGL 73

                          90
                  ....*....|..
gi 503532272  151 KDDDIDAIFAYV 162
Cdd:pfam00034  74 TDEEIADLVAYL 85
Cyc7 COG3474
Cytochrome c2 [Energy production and conversion];
71-161 4.93e-07

Cytochrome c2 [Energy production and conversion];


Pssm-ID: 442697 [Multi-domain]  Cd Length: 101  Bit Score: 45.64  E-value: 4.93e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503532272  71 AQKGKTIFIANCAACHN-KNMRDDLTGPALGGVKE-KWAAYP----------------RQDLYKWIRNSQAMIqqkhPRa 132
Cdd:COG3474    3 AAAGEKLFNRKCAACHSvDGGAGNRVGPNLNGVVGrKAGSVEgfaysdalkasglvwdEETLDAWLADPKAFV----PG- 77

                         90       100       110
                 ....*....|....*....|....*....|
gi 503532272 133 lalwkdwnpTIMnSFNSLKD-DDIDAIFAY 161
Cdd:COG3474   78 ---------TKM-PFAGLKDpEDRADLIAY 97
thiosulf_SoxX TIGR04485
sulfur oxidation c-type cytochrome SoxX; Members of this family are SoxX, a c-type cytochrome ...
 81-162 5.47e-05

sulfur oxidation c-type cytochrome SoxX; Members of this family are SoxX, a c-type cytochrome with a CxxCH motif, part of a heterodimer with SoxA. SoxXA, SoxYZ, and SoxB contribute to thiosulfate oxidation to sulfate.


Pssm-ID: 275278 [Multi-domain]  Cd Length: 78  Bit Score: 39.49  E-value: 5.47e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503532272   81 NCAACHNKNMRDDLTG---PALGGVKEKWAAypRQDLYKWIRNSQAMiqqkhpralalwkdwNP-TIMNSFNS---LKDD 153
Cdd:TIGR04485   4 NCLACHQIPGSEVFPGnigPSLTGYGARYPD--EAYLRAKIADAKAV---------------NPcTVMPRFGKngiLTEQ 66


                  ....*....
gi 503532272  154 DIDAIFAYV 162
Cdd:TIGR04485  67 EIEDVVAYL 75
PRK14486 PRK14486
putative bifunctional cbb3-type cytochrome c oxidase subunit II/cytochrome c; Provisional
 43-168 4.16e-03

putative bifunctional cbb3-type cytochrome c oxidase subunit II/cytochrome c; Provisional


Pssm-ID: 184704 [Multi-domain]  Cd Length: 294  Bit Score: 36.72  E-value: 4.16e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503532272  43 YTLIFKKDVPDKTLTSIDYILPIT--LSETAQ---KGKTIFIANCAACHNKNMRDDLtGPALGGVKEkwAAYPRQDLYKW 117
Cdd:PRK14486 182 YMQSLGKAIPRRAAGGAEVDLELPnpFATDVAaiaKGKALYDANCAACHGDEAQGQE-GVALNDIDD--GDLPDAAYFGM 258

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 503532272 118 IRNSQamiqqkhpralalwkdwNPTIMNSFNS-LKDDDIDAIFAYVEEVYAA 168
Cdd:PRK14486 259 IKGGS-----------------DAKGMPGFGGdLSDDDIWAIVAYIRSQKAH 293
 
Name Accession Description Interval E-value
Cytochrom_C pfam00034
Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and ...
 72-162 2.37e-10

Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family.


Pssm-ID: 459641 [Multi-domain]  Cd Length: 89  Bit Score: 54.47  E-value: 2.37e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503532272   72 QKGKTIFIANCAACHNKNMRDD-LTGPALGGVKEKWaayPRQDLYKWIRNSQAMIQQKHPRALAlwkdWNPTIMNSFNSL 150
Cdd:pfam00034   1 ARGKKLFAANCAACHGVNGEGAgAGGPDLAGLAARY---PGDALGAIRENKHAIGGGGVDRAGG----PPGTGMPAFDGL 73

                          90
                  ....*....|..
gi 503532272  151 KDDDIDAIFAYV 162
Cdd:pfam00034  74 TDEEIADLVAYL 85
Cyc7 COG3474
Cytochrome c2 [Energy production and conversion];
71-161 4.93e-07

Cytochrome c2 [Energy production and conversion];


Pssm-ID: 442697 [Multi-domain]  Cd Length: 101  Bit Score: 45.64  E-value: 4.93e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503532272  71 AQKGKTIFIANCAACHN-KNMRDDLTGPALGGVKE-KWAAYP----------------RQDLYKWIRNSQAMIqqkhPRa 132
Cdd:COG3474    3 AAAGEKLFNRKCAACHSvDGGAGNRVGPNLNGVVGrKAGSVEgfaysdalkasglvwdEETLDAWLADPKAFV----PG- 77

                         90       100       110
                 ....*....|....*....|....*....|
gi 503532272 133 lalwkdwnpTIMnSFNSLKD-DDIDAIFAY 161
Cdd:COG3474   78 ---------TKM-PFAGLKDpEDRADLIAY 97
CccA COG2010
Cytochrome c, mono- and diheme variants [Energy production and conversion];
64-167 4.97e-07

Cytochrome c, mono- and diheme variants [Energy production and conversion];


Pssm-ID: 441613 [Multi-domain]  Cd Length: 169  Bit Score: 47.25  E-value: 4.97e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503532272  64 PITLSETAQKGKTIFIANCAACHNKNMRDDL-TGPALGGVKEKwaAYPRQDLYKWIRNSQamiqqkhpralalwkdwNPT 142
Cdd:COG2010   82 PAADAEALARGKALYEQNCAACHGADGKGGLgAAPNLTDDALY--GGDPEALVETILNGR-----------------PGG 142

                         90       100
                 ....*....|....*....|....*.
gi 503532272 143 IMNSFNS-LKDDDIDAIFAYVEEVYA 167
Cdd:COG2010  143 AMPAFGGqLSDEEIAALAAYLRSLSG 168
CytC552 COG4654
Cytochrome c551/c552 [Energy production and conversion];
68-162 1.03e-06

Cytochrome c551/c552 [Energy production and conversion];


Pssm-ID: 443692 [Multi-domain]  Cd Length: 88  Bit Score: 44.51  E-value: 1.03e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503532272  68 SETAQKGKTIFIAN-CAACHNKNmrDDLTGPALGGVKEKWAAYP--RQDLYKWIRNSQAmiqqkhpralalwKDWNPTIM 144
Cdd:COG4654    1 AADAAAGKALAKKSgCLACHAVD--KKLVGPSYKDVAKKYKGKAdaVAKLAKKIKKGGS-------------GVWGDVPM 65

                         90
                 ....*....|....*...
gi 503532272 145 NSFNSLKDDDIDAIFAYV 162
Cdd:COG4654   66 PPHPQLSDAEAKALVKWI 83
CytC553 COG2863
Cytochrome c553 [Energy production and conversion];
71-162 4.35e-05

Cytochrome c553 [Energy production and conversion];


Pssm-ID: 442110 [Multi-domain]  Cd Length: 98  Bit Score: 40.48  E-value: 4.35e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503532272  71 AQKGKTiFIANCAACHNKNMRDDLTG--PALGGvkeKWAAYprqdLYKwirnsqamiqqkhprALALWKDW--NPTIMNS 146
Cdd:COG2863   15 AARGKA-YAAACAACHGADGEGNPGGgaPRLAG---QHAEY----LVA---------------QLKAFRSGarKNGVMPA 71

                         90
                 ....*....|....*..
gi 503532272 147 F-NSLKDDDIDAIFAYV 162
Cdd:COG2863   72 IaKGLSDEDIKALAAYI 88
thiosulf_SoxX TIGR04485
sulfur oxidation c-type cytochrome SoxX; Members of this family are SoxX, a c-type cytochrome ...
 81-162 5.47e-05

sulfur oxidation c-type cytochrome SoxX; Members of this family are SoxX, a c-type cytochrome with a CxxCH motif, part of a heterodimer with SoxA. SoxXA, SoxYZ, and SoxB contribute to thiosulfate oxidation to sulfate.


Pssm-ID: 275278 [Multi-domain]  Cd Length: 78  Bit Score: 39.49  E-value: 5.47e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503532272   81 NCAACHNKNMRDDLTG---PALGGVKEKWAAypRQDLYKWIRNSQAMiqqkhpralalwkdwNP-TIMNSFNS---LKDD 153
Cdd:TIGR04485   4 NCLACHQIPGSEVFPGnigPSLTGYGARYPD--EAYLRAKIADAKAV---------------NPcTVMPRFGKngiLTEQ 66


                  ....*....
gi 503532272  154 DIDAIFAYV 162
Cdd:TIGR04485  67 EIEDVVAYL 75
TsdA COG3258
Thiosulfate dehydrogenase TsdA, contains C-terminal cytochrome c domain [Inorganic ion ...
 67-162 7.98e-05

Thiosulfate dehydrogenase TsdA, contains C-terminal cytochrome c domain [Inorganic ion transport and metabolism];


Pssm-ID: 442489 [Multi-domain]  Cd Length: 216  Bit Score: 41.38  E-value: 7.98e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503532272  67 LSETAQKGKTIFIANCAACH------NKNMRDDLTGPALGGVKEK-WAAY-PR-QDLYKWIRNSqAMiqqkhPralalwk 137
Cdd:COG3258  113 ASADVERGKALYAERCASCHgadgegQGRADGQYGFPPLWGGDSYnDGAGmARlGTLADFIKGR-NM-----P------- 179

                         90       100
                 ....*....|....*....|....*
gi 503532272 138 dwnptiMNSFNSLKDDDIDAIFAYV 162
Cdd:COG3258  180 ------LGKPGSLSDDEAWDVAAYV 198
Cytochrome_CBB3 pfam13442
Cytochrome C oxidase, cbb3-type, subunit III;
69-162 1.05e-04

Cytochrome C oxidase, cbb3-type, subunit III;


Pssm-ID: 463879 [Multi-domain]  Cd Length: 67  Bit Score: 38.54  E-value: 1.05e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503532272   69 ETAQKGKTIFIANCAACHNKNMrddlTGPALGGvkekwAAYPRQDLYKWIRN-SQAMiqqkhpralalwKDWNPTimnsf 147
Cdd:pfam13442   1 AAAAAGEALYAANCASCHGTGG----AGPSLAG-----RALPPEALVDIIRNgKGAM------------PAFGGD----- 54

                          90
                  ....*....|....*
gi 503532272  148 nsLKDDDIDAIFAYV 162
Cdd:pfam13442  55 --LSDEELEALAAYL 67
MauG COG1858
Cytochrome c peroxidase [Posttranslational modification, protein turnover, chaperones];
66-114 1.87e-04

Cytochrome c peroxidase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 441463 [Multi-domain]  Cd Length: 283  Bit Score: 40.53  E-value: 1.87e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 503532272  66 TLSETAQKGKTIFI--ANCAACHNknmrddltGPALG-------GVKEKWAAYPRQDL 114
Cdd:COG1858  151 ALTEQEKRGLNLFFgkAGCASCHN--------GPLFTdnsfhniGLPENYGGPPDADL 200
PRK14486 PRK14486
putative bifunctional cbb3-type cytochrome c oxidase subunit II/cytochrome c; Provisional
 43-168 4.16e-03

putative bifunctional cbb3-type cytochrome c oxidase subunit II/cytochrome c; Provisional


Pssm-ID: 184704 [Multi-domain]  Cd Length: 294  Bit Score: 36.72  E-value: 4.16e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503532272  43 YTLIFKKDVPDKTLTSIDYILPIT--LSETAQ---KGKTIFIANCAACHNKNMRDDLtGPALGGVKEkwAAYPRQDLYKW 117
Cdd:PRK14486 182 YMQSLGKAIPRRAAGGAEVDLELPnpFATDVAaiaKGKALYDANCAACHGDEAQGQE-GVALNDIDD--GDLPDAAYFGM 258

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 503532272 118 IRNSQamiqqkhpralalwkdwNPTIMNSFNS-LKDDDIDAIFAYVEEVYAA 168
Cdd:PRK14486 259 IKGGS-----------------DAKGMPGFGGdLSDDDIWAIVAYIRSQKAH 293
CytM COG5676
Cytochrome cM [Energy production and conversion];
66-105 4.71e-03

Cytochrome cM [Energy production and conversion];


Pssm-ID: 444390 [Multi-domain]  Cd Length: 124  Bit Score: 35.30  E-value: 4.71e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 503532272  66 TLSETAQKGKTIFIANCAACHNKNMrDDLTGPALGGV-KEK 105
Cdd:COG5676   48 SLTGDPTRGHAIFQINCAGCHGLQA-DGNVGPSLQGVsKRK 87
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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