|
Name |
Accession |
Description |
Interval |
E-value |
| SecA |
COG0653 |
Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, ... |
2-904 |
0e+00 |
|
Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440418 [Multi-domain] Cd Length: 876 Bit Score: 1729.50 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 2 LIKLLTKVFGSRNDRTLRRMRKVVDLINRMEPEIQKLTDEQLQAKTNEFRERLAKGEVLENLIPEAFAVVRESSKRVFGM 81
Cdd:COG0653 1 MGKLLKKIFGSRNDRELKRLRKIVDKINALEPEMEALSDEELRAKTDEFKERLANGETLDDLLPEAFAVVREASKRVLGM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 82 RHFDVQLLGGMVLNERCIAEMRTGEGKTLTATLPAYLNALSGKGVHVVTVNDYLAQRDAENNRPLFEFLGLSIGINLPGM 161
Cdd:COG0653 81 RHFDVQLIGGIVLHQGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGRLYRFLGLSVGVIVHGM 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 162 PSPAKRAAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYTRVDK 241
Cdd:COG0653 161 DPEERRAAYAADITYGTNNEFGFDYLRDNMVFSLEDMVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDSTDLYYRINK 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 242 LIPKLIRqekedsdsfqgEGHFSVDEKSRQVHLTERGLVLIEELLveaGImeegESLYSPTNIMLMHHVTAALRAHVLFT 321
Cdd:COG0653 241 LVPRLKR-----------DGDYTVDEKARTVTLTEEGIEKVEKLL---GI----DNLYDPENIELVHHLNQALRAHALFK 302
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 322 RDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVDIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEF 401
Cdd:COG0653 303 RDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEF 382
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 402 SSIYKLDTIVVPTNRPMVRKDMADLVYMTEMEKIGAIIEDIRQCTAKGQPVLVGTISIEKSEVVSNELTKAGIAHSVLNA 481
Cdd:COG0653 383 REIYGLDVVVIPTNRPMIRKDEPDLVYKTEEEKFNAVVEDIKERHEKGQPVLVGTTSIEKSELLSKLLKKEGIPHNVLNA 462
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 482 KFHAKEADIVAQAGQPSAVTIATNMAGRGTDIVLGGSWQVEVENLGEE---ATDEKIAEIKAAWQIRHDAVLASGGLHII 558
Cdd:COG0653 463 KQHEREAEIVAQAGRPGAVTIATNMAGRGTDIVLGGNPEFLAAAELADrglEWEEAIAKIKAEWQAEHEEVLEAGGLHVI 542
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 559 GTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDALMRIFASDRVSSMMRKLGMKPGEAIEHPWVTKAIANAQRKVESR 638
Cdd:COG0653 543 GTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLMRIFGSDRIKGMMDKLGMEEGEPIEHKMVSKAIENAQKKVEGR 622
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 639 NFDIRKQLLEYDDVASDQRRAIYSQRNELLDVSDVSETIASIREDVFKATIDSYIPPQSLEEMWDVQGLEERLKKDFELE 718
Cdd:COG0653 623 NFDIRKNLLEYDDVMNDQRKVIYEQRREILEGEDLSETILDMREDVIEDLVDEYIPEGSYPEQWDLEGLEEALKELFGLD 702
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 719 MPIAEWLDkEPELHEETLRERIMEIAKESYARKEEVVGAEMMRNFEKGVMLQTLDSLWKEHLAAMDYLRQGIHLRGYAQK 798
Cdd:COG0653 703 LPIEEWLD-EEGLDEEELRERLLEAADEAYEEKEEELGPEVMRELERVVLLQVLDRKWREHLDAMDHLRQGIGLRGYAQK 781
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 799 DPKQEYKRESFAMFAAMLESLKYEVVSVLSKVQVRMPEEVEAMEIQRREEAERLArqqqlshqdqqEIEVAEAARLASSG 878
Cdd:COG0653 782 DPLVEYKREAFELFEEMLDSIKEEVVRYLFRVQVRSEEEREEVEEERRENHADPA-----------GEEEEEAPKQPVRK 850
|
890 900
....*....|....*....|....*.
gi 503342340 879 DRKVGRNDLCPCGSGKKYKQCHGRLQ 904
Cdd:COG0653 851 GPKVGRNDPCPCGSGKKYKHCHGKLA 876
|
|
| PRK12904 |
PRK12904 |
preprotein translocase subunit SecA; Reviewed |
2-904 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237259 [Multi-domain] Cd Length: 830 Bit Score: 1687.57 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 2 LIKLLTKVFGSRNDRTLRRMRKVVDLINRMEPEIQKLTDEQLQAKTNEFRERLAKGEVLENLIPEAFAVVRESSKRVFGM 81
Cdd:PRK12904 1 MLGLLKKIFGSRNDRELKRLRKIVDKINALEPEMEKLSDEELKAKTAEFKERLAKGETLDDLLPEAFAVVREASKRVLGM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 82 RHFDVQLLGGMVLNERCIAEMRTGEGKTLTATLPAYLNALSGKGVHVVTVNDYLAQRDAENNRPLFEFLGLSIGINLPGM 161
Cdd:PRK12904 81 RHFDVQLIGGMVLHEGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGVILSGM 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 162 PSPAKRAAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYTRVDK 241
Cdd:PRK12904 161 SPEERREAYAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDSSELYKRANK 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 242 LIPKLirqekedsdsfQGEGHFSVDEKSRQVHLTERGLVLIEELLVEagimeegESLYSPTNIMLMHHVTAALRAHVLFT 321
Cdd:PRK12904 241 IVPTL-----------EKEGDYTVDEKSRTVGLTEEGIEKAEKLLGI-------ENLYDPENIALVHHLNQALRAHELFK 302
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 322 RDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVDIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEF 401
Cdd:PRK12904 303 RDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEF 382
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 402 SSIYKLDTIVVPTNRPMVRKDMADLVYMTEMEKIGAIIEDIRQCTAKGQPVLVGTISIEKSEVVSNELTKAGIAHSVLNA 481
Cdd:PRK12904 383 REIYNLDVVVIPTNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNA 462
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 482 KFHAKEADIVAQAGQPSAVTIATNMAGRGTDIVLGGSWQVEVENLGEEATDEKIAEIKAAWQIRHDAVLASGGLHIIGTE 561
Cdd:PRK12904 463 KNHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTE 542
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 562 RHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDALMRIFASDRVSSMMRKLGMKPGEAIEHPWVTKAIANAQRKVESRNFD 641
Cdd:PRK12904 543 RHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLMRIFGSDRVKGMMDRLGMKEGEAIEHKMVTRAIENAQKKVEGRNFD 622
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 642 IRKQLLEYDDVASDQRRAIYSQRNELLDVSDVSETIASIREDVFKATIDSYIPPQSLEEMWDVQGLEERLKKDFELEMPI 721
Cdd:PRK12904 623 IRKQLLEYDDVMNDQRKVIYAQRNEILEGEDLSETILDMREDVIEDLVDAYIPPGSYEEDWDLEGLEEALKTDFGLELPI 702
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 722 AEWLDKepELHEETLRERIMEIAKESYARKEEVVGAEMMRNFEKGVMLQTLDSLWKEHLAAMDYLRQGIHLRGYAQKDPK 801
Cdd:PRK12904 703 EEWLEE--GLDEEELRERILEAAEEAYEEKEEELGEEQMREFERVVMLQVLDTKWREHLAAMDHLRQGIGLRGYAQKDPL 780
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 802 QEYKRESFAMFAAMLESLKYEVVSVLSKVQVrmpeeveameiqrreeaerlarqqqlshqdqqeievaeaarlassgdrk 881
Cdd:PRK12904 781 QEYKREGFELFEEMLDSIKEEVVRTLMKVQI------------------------------------------------- 811
|
890 900
....*....|....*....|...
gi 503342340 882 vgrnDLCPCGSGKKYKQCHGRLQ 904
Cdd:PRK12904 812 ----DPCPCGSGKKYKHCHGRLA 830
|
|
| secA |
TIGR00963 |
preprotein translocase, SecA subunit; The proteins SecA-F and SecY, not all of which are ... |
28-819 |
0e+00 |
|
preprotein translocase, SecA subunit; The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus. This model excludes SecA2 of the accessory secretory system. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273366 [Multi-domain] Cd Length: 742 Bit Score: 1217.10 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 28 INRMEPEIQKLTDEQLQAKTNEFRERLAK-GEVLENLIPEAFAVVRESSKRVFGMRHFDVQLLGGMVLNERCIAEMRTGE 106
Cdd:TIGR00963 1 INALEEDYEKLSDEELRNKTNEFKDRLAKqGETLDDLLPEAFAVVREASKRVLGMRPFDVQLIGGIALHKGKIAEMKTGE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 107 GKTLTATLPAYLNALSGKGVHVVTVNDYLAQRDAENNRPLFEFLGLSIGINLPGMPSPAKRAAYAADITYGTNNEYGFDY 186
Cdd:TIGR00963 81 GKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLILSGMSPEERREAYACDITYGTNNELGFDY 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 187 LRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYTRVDKLipklirqekedSDSFQGEGHFSVD 266
Cdd:TIGR00963 161 LRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPAEKSTELYVQANKF-----------AKALEKEVDYEVD 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 267 EKSRQVHLTERGLVLIEELLVEagimeegESLYSPTNIMLMHHVTAALRAHVLFTRDVDYIVKDGEVIIVDEHTGRTMQG 346
Cdd:TIGR00963 230 EKNRAVLLTEQGMKKAEDLLGV-------DNLYDLENSPLIHYINNALKAKELFQKDVDYIVRDGEVVIVDEFTGRIMEG 302
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 347 RRWSDGLHQAVEAKEGVDIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTIVVPTNRPMVRKDMADL 426
Cdd:TIGR00963 303 RRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFRKIYNLEVVVVPTNRPVIRKDRPDL 382
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 427 VYMTEMEKIGAIIEDIRQCTAKGQPVLVGTISIEKSEVVSNELTKAGIAHSVLNAKFHAKEADIVAQAGQPSAVTIATNM 506
Cdd:TIGR00963 383 VYKTEEEKWKAVVEEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAKNHEREAEIIAQAGRKGAVTIATNM 462
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 507 AGRGTDIVLggswqVEVENLgeeatdekiaeikaawqirhdavlasGGLHIIGTERHESRRIDNQLRGRAGRQGDAGSSR 586
Cdd:TIGR00963 463 AGRGTDIKL-----EEVKEL--------------------------GGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSR 511
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 587 FYLSMEDALMRIFASDRVSSMMRKLGMKPGEAIEHPWVTKAIANAQRKVESRNFDIRKQLLEYDDVASDQRRAIYSQRNE 666
Cdd:TIGR00963 512 FFLSLEDNLMRIFGGDRLEGLMRRLGMDDDEPIESKMVSRALESAQKRVEGRNFDIRKQLLEYDDVLNKQREVIYAERRR 591
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 667 LLDVSDVSETIASIREDVFKATIDSYIPPQSLEEMWDVQGLEERLKKDFELEMPIAEWLDKepELHEETLRERIMEIAKE 746
Cdd:TIGR00963 592 VLESEDLSELILQMLESTLDRIVDAYINEEKLSEEWDLEGLIEKLKTLFLLDGDLTPEDLE--NLTSEDLKELLLEKIRA 669
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 503342340 747 SYARKEEVVGAEMMRNFEKGVMLQTLDSLWKEHLAAMDYLRQGIHLRGYAQKDPKQEYKRESFAMFAAMLESL 819
Cdd:TIGR00963 670 AYDEKEEQLESERMREFERYVLLQSIDRKWKEHLDAMDLLREGIGLRSYGQKDPLIEYKNEGFNLFEEMLEDI 742
|
|
| SecA_DEAD |
smart00957 |
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with ... |
6-401 |
0e+00 |
|
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the.
Pssm-ID: 214937 [Multi-domain] Cd Length: 380 Bit Score: 758.50 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 6 LTKVFGSRNDRTLRRMRKVVDLINRMEPEIQKLTDEQLQAKTNEFRERLAKGEVLENLIPEAFAVVRESSKRVFGMRHFD 85
Cdd:smart00957 1 LKKLFGSKNDRELKRLRKIVDQINALEPEMEALSDEELRAKTAEFKERLAEGESLDDLLPEAFAVVREAAKRVLGMRHFD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 86 VQLLGGMVLNERCIAEMRTGEGKTLTATLPAYLNALSGKGVHVVTVNDYLAQRDAENNRPLFEFLGLSIGINLPGMPSPA 165
Cdd:smart00957 81 VQLIGGIVLHEGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLTVGVIVSGMSPEE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 166 KRAAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAED-SSEMYTRVDKLIP 244
Cdd:smart00957 161 RRAAYAADITYGTNNEFGFDYLRDNMAFSKEDKVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDeSSDLYHRADKFVP 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 245 KLIRQEkedsdsfqgegHFSVDEKSRQVHLTERGLVLIEELLVEagimeegESLYSPTNIMLMHHVTAALRAHVLFTRDV 324
Cdd:smart00957 241 RLKEDE-----------DYTVDEKSRTVELTEEGIEKAEKLLGI-------DNLYDPENIELLHHVNQALRAHYLFKRDV 302
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 503342340 325 DYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVDIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEF 401
Cdd:smart00957 303 DYIVRDGEVVIVDEFTGRVMEGRRYSDGLHQAIEAKEGVEIQEENQTLATITFQNYFRMYKKLSGMTGTAKTEAEEF 379
|
|
| SecA_DEAD |
pfam07517 |
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with ... |
6-402 |
0e+00 |
|
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the pfam00270.
Pssm-ID: 462190 [Multi-domain] Cd Length: 379 Bit Score: 688.46 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 6 LTKVFGSRNDRTLRRMRKVVDLINRMEPEIQKLTDEQLQAKTNEFRERLAKGEVLENLIPEAFAVVRESSKRVFGMRHFD 85
Cdd:pfam07517 1 LKKIFGSPNERDLKRLRKIVDQINALEEELKALSDEELRAKTDELRERLREGESLDDILPEAFALVREAAKRVLGMRHYD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 86 VQLLGGMVLNERCIAEMRTGEGKTLTATLPAYLNALSGKGVHVVTVNDYLAQRDAENNRPLFEFLGLSIGINLPGMPSPA 165
Cdd:pfam07517 81 VQLIGGLVLHEGKIAEMKTGEGKTLTATLPAYLNALSGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLTVGVITSDMDPEE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 166 KRAAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYTRVDKLIPK 245
Cdd:pfam07517 161 RRAAYNADITYGTNNELGFDYLRDNMATSKEDKVQRGLNFAIVDEVDSILIDEARTPLIISGPSEDDSELYREADRLVKS 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 246 LirqekedsdsfQGEGHFSVDEKSRQVHLTERGLVLIEELLveagimeEGESLYSPTNIMLMHHVTAALRAHVLFTRDVD 325
Cdd:pfam07517 241 L-----------EEDGDYEIDEKSKNVELTEKGIEKIEKLL-------GIDNLYDPENVELLHHINQALKAHHLFKRDVD 302
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 503342340 326 YIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVDIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFS 402
Cdd:pfam07517 303 YIVRDGEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEITPESQTLASITYQNFFRLYPKLSGMTGTAKTEAEEFR 379
|
|
| DEXDc_SecA |
cd17928 |
DEXD-box helicase domain of SecA; SecA is a part of the Sec translocase that transports the ... |
42-414 |
9.97e-130 |
|
DEXD-box helicase domain of SecA; SecA is a part of the Sec translocase that transports the vast majority of bacterial and ER-exported proteins. SecA binds both the signal sequence and the mature domain of the preprotein emerging from the ribosome. SecA belongs to the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350686 [Multi-domain] Cd Length: 230 Bit Score: 388.82 E-value: 9.97e-130
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 42 QLQAKTNEFRERLAKGEVLENLIPEAFAVVRESSKRVFGMRHFDVQLLGGMVLNERCIAEMRTGEGKTLTATLPAYLNAL 121
Cdd:cd17928 1 ELRAKTDELRERLAKGETLDDLLPEAFALVREAARRVLGMRPFDVQLIGGLVLHEGKIAEMKTGEGKTLTATLPAYLNAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 122 SGKGVHVVTVNDYLAQRDAENNRPLFEFLGLSIGINLPGMPSPAKRAAYAADITYGTNNEYGFDYLRDNMAFSPEERVQR 201
Cdd:cd17928 81 TGKGVHVVTVNDYLARRDAEWMGPLYEFLGLTVGVILSDMSPDERREAYAADITYGTNNELGFDYLRDNMVTSKEDLVQR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 202 KLHYALVDEVDSILIDEARTPLIISGpaedssemytrvdklipklirqekedsdsfqgeghfsvdeksrqvhlterglvl 281
Cdd:cd17928 161 GLNFAIVDEVDSILIDEARTPLIISG------------------------------------------------------ 186
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 282 ieellveagimeegeslysptnimlmhhvtaalrahvlftrdvdyivkdgeviivdehtgrtmqgrrwsdglhqaveake 361
Cdd:cd17928 --------------------------------------------------------------------------------
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 503342340 362 gvdiqnenqTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTIVVPT 414
Cdd:cd17928 187 ---------TLATITFQNYFRLYPKLAGMTGTAKTEAEEFREIYNLDVVVIPT 230
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| SecA |
COG0653 |
Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, ... |
2-904 |
0e+00 |
|
Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440418 [Multi-domain] Cd Length: 876 Bit Score: 1729.50 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 2 LIKLLTKVFGSRNDRTLRRMRKVVDLINRMEPEIQKLTDEQLQAKTNEFRERLAKGEVLENLIPEAFAVVRESSKRVFGM 81
Cdd:COG0653 1 MGKLLKKIFGSRNDRELKRLRKIVDKINALEPEMEALSDEELRAKTDEFKERLANGETLDDLLPEAFAVVREASKRVLGM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 82 RHFDVQLLGGMVLNERCIAEMRTGEGKTLTATLPAYLNALSGKGVHVVTVNDYLAQRDAENNRPLFEFLGLSIGINLPGM 161
Cdd:COG0653 81 RHFDVQLIGGIVLHQGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGRLYRFLGLSVGVIVHGM 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 162 PSPAKRAAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYTRVDK 241
Cdd:COG0653 161 DPEERRAAYAADITYGTNNEFGFDYLRDNMVFSLEDMVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDSTDLYYRINK 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 242 LIPKLIRqekedsdsfqgEGHFSVDEKSRQVHLTERGLVLIEELLveaGImeegESLYSPTNIMLMHHVTAALRAHVLFT 321
Cdd:COG0653 241 LVPRLKR-----------DGDYTVDEKARTVTLTEEGIEKVEKLL---GI----DNLYDPENIELVHHLNQALRAHALFK 302
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 322 RDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVDIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEF 401
Cdd:COG0653 303 RDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEF 382
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 402 SSIYKLDTIVVPTNRPMVRKDMADLVYMTEMEKIGAIIEDIRQCTAKGQPVLVGTISIEKSEVVSNELTKAGIAHSVLNA 481
Cdd:COG0653 383 REIYGLDVVVIPTNRPMIRKDEPDLVYKTEEEKFNAVVEDIKERHEKGQPVLVGTTSIEKSELLSKLLKKEGIPHNVLNA 462
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 482 KFHAKEADIVAQAGQPSAVTIATNMAGRGTDIVLGGSWQVEVENLGEE---ATDEKIAEIKAAWQIRHDAVLASGGLHII 558
Cdd:COG0653 463 KQHEREAEIVAQAGRPGAVTIATNMAGRGTDIVLGGNPEFLAAAELADrglEWEEAIAKIKAEWQAEHEEVLEAGGLHVI 542
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 559 GTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDALMRIFASDRVSSMMRKLGMKPGEAIEHPWVTKAIANAQRKVESR 638
Cdd:COG0653 543 GTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLMRIFGSDRIKGMMDKLGMEEGEPIEHKMVSKAIENAQKKVEGR 622
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 639 NFDIRKQLLEYDDVASDQRRAIYSQRNELLDVSDVSETIASIREDVFKATIDSYIPPQSLEEMWDVQGLEERLKKDFELE 718
Cdd:COG0653 623 NFDIRKNLLEYDDVMNDQRKVIYEQRREILEGEDLSETILDMREDVIEDLVDEYIPEGSYPEQWDLEGLEEALKELFGLD 702
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 719 MPIAEWLDkEPELHEETLRERIMEIAKESYARKEEVVGAEMMRNFEKGVMLQTLDSLWKEHLAAMDYLRQGIHLRGYAQK 798
Cdd:COG0653 703 LPIEEWLD-EEGLDEEELRERLLEAADEAYEEKEEELGPEVMRELERVVLLQVLDRKWREHLDAMDHLRQGIGLRGYAQK 781
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 799 DPKQEYKRESFAMFAAMLESLKYEVVSVLSKVQVRMPEEVEAMEIQRREEAERLArqqqlshqdqqEIEVAEAARLASSG 878
Cdd:COG0653 782 DPLVEYKREAFELFEEMLDSIKEEVVRYLFRVQVRSEEEREEVEEERRENHADPA-----------GEEEEEAPKQPVRK 850
|
890 900
....*....|....*....|....*.
gi 503342340 879 DRKVGRNDLCPCGSGKKYKQCHGRLQ 904
Cdd:COG0653 851 GPKVGRNDPCPCGSGKKYKHCHGKLA 876
|
|
| PRK12904 |
PRK12904 |
preprotein translocase subunit SecA; Reviewed |
2-904 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237259 [Multi-domain] Cd Length: 830 Bit Score: 1687.57 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 2 LIKLLTKVFGSRNDRTLRRMRKVVDLINRMEPEIQKLTDEQLQAKTNEFRERLAKGEVLENLIPEAFAVVRESSKRVFGM 81
Cdd:PRK12904 1 MLGLLKKIFGSRNDRELKRLRKIVDKINALEPEMEKLSDEELKAKTAEFKERLAKGETLDDLLPEAFAVVREASKRVLGM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 82 RHFDVQLLGGMVLNERCIAEMRTGEGKTLTATLPAYLNALSGKGVHVVTVNDYLAQRDAENNRPLFEFLGLSIGINLPGM 161
Cdd:PRK12904 81 RHFDVQLIGGMVLHEGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGVILSGM 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 162 PSPAKRAAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYTRVDK 241
Cdd:PRK12904 161 SPEERREAYAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDSSELYKRANK 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 242 LIPKLirqekedsdsfQGEGHFSVDEKSRQVHLTERGLVLIEELLVEagimeegESLYSPTNIMLMHHVTAALRAHVLFT 321
Cdd:PRK12904 241 IVPTL-----------EKEGDYTVDEKSRTVGLTEEGIEKAEKLLGI-------ENLYDPENIALVHHLNQALRAHELFK 302
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 322 RDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVDIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEF 401
Cdd:PRK12904 303 RDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEF 382
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 402 SSIYKLDTIVVPTNRPMVRKDMADLVYMTEMEKIGAIIEDIRQCTAKGQPVLVGTISIEKSEVVSNELTKAGIAHSVLNA 481
Cdd:PRK12904 383 REIYNLDVVVIPTNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNA 462
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 482 KFHAKEADIVAQAGQPSAVTIATNMAGRGTDIVLGGSWQVEVENLGEEATDEKIAEIKAAWQIRHDAVLASGGLHIIGTE 561
Cdd:PRK12904 463 KNHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTE 542
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 562 RHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDALMRIFASDRVSSMMRKLGMKPGEAIEHPWVTKAIANAQRKVESRNFD 641
Cdd:PRK12904 543 RHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLMRIFGSDRVKGMMDRLGMKEGEAIEHKMVTRAIENAQKKVEGRNFD 622
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 642 IRKQLLEYDDVASDQRRAIYSQRNELLDVSDVSETIASIREDVFKATIDSYIPPQSLEEMWDVQGLEERLKKDFELEMPI 721
Cdd:PRK12904 623 IRKQLLEYDDVMNDQRKVIYAQRNEILEGEDLSETILDMREDVIEDLVDAYIPPGSYEEDWDLEGLEEALKTDFGLELPI 702
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 722 AEWLDKepELHEETLRERIMEIAKESYARKEEVVGAEMMRNFEKGVMLQTLDSLWKEHLAAMDYLRQGIHLRGYAQKDPK 801
Cdd:PRK12904 703 EEWLEE--GLDEEELRERILEAAEEAYEEKEEELGEEQMREFERVVMLQVLDTKWREHLAAMDHLRQGIGLRGYAQKDPL 780
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 802 QEYKRESFAMFAAMLESLKYEVVSVLSKVQVrmpeeveameiqrreeaerlarqqqlshqdqqeievaeaarlassgdrk 881
Cdd:PRK12904 781 QEYKREGFELFEEMLDSIKEEVVRTLMKVQI------------------------------------------------- 811
|
890 900
....*....|....*....|...
gi 503342340 882 vgrnDLCPCGSGKKYKQCHGRLQ 904
Cdd:PRK12904 812 ----DPCPCGSGKKYKHCHGRLA 830
|
|
| secA |
PRK12906 |
preprotein translocase subunit SecA; Reviewed |
2-833 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237260 [Multi-domain] Cd Length: 796 Bit Score: 1243.44 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 2 LIKLLTKVFGSRNdRTLRRMRKVVDLINRMEPEIQKLTDEQLQAKTNEFRERLAKGEVLENLIPEAFAVVRESSKRVFGM 81
Cdd:PRK12906 1 MANILKKWFDNDK-RELKRLEKIADKVNALEDEYEKLSDEQLQAKTPEFRDRIKDGESLDDLLPEAFAVAREGAKRVLGL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 82 RHFDVQLLGGMVLNERCIAEMRTGEGKTLTATLPAYLNALSGKGVHVVTVNDYLAQRDAENNRPLFEFLGLSIGINLPGM 161
Cdd:PRK12906 80 RPFDVQIIGGIVLHEGNIAEMKTGEGKTLTATLPVYLNALTGKGVHVVTVNEYLSSRDATEMGELYRWLGLTVGLNLNSM 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 162 PSPAKRAAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYTRVDK 241
Cdd:PRK12906 160 SPDEKRAAYNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISGQAEKATDLYIRADR 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 242 LIPKLIRQEKEDSDSFQGEGHFSVDEKSRQVHLTERGLVLIEELLveagimeEGESLYSPTNIMLMHHVTAALRAHVLFT 321
Cdd:PRK12906 240 FVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLF-------GLDNLYDSENTALAHHIDQALRANYIML 312
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 322 RDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVDIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEF 401
Cdd:PRK12906 313 KDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAKTEEEEF 392
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 402 SSIYKLDTIVVPTNRPMVRKDMADLVYMTEMEKIGAIIEDIRQCTAKGQPVLVGTISIEKSEVVSNELTKAGIAHSVLNA 481
Cdd:PRK12906 393 REIYNMEVITIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNA 472
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 482 KFHAKEADIVAQAGQPSAVTIATNMAGRGTDIVLGGSwqvevenlgeeatdekiaeikaawqirhdaVLASGGLHIIGTE 561
Cdd:PRK12906 473 KNHAKEAEIIMNAGQRGAVTIATNMAGRGTDIKLGPG------------------------------VKELGGLAVIGTE 522
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 562 RHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDALMRIFASDRVSSMMRKLGM-KPGEAIEHPWVTKAIANAQRKVESRNF 640
Cdd:PRK12906 523 RHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLMRRFGSDRVKAFLDRLGMnDDDQVIESRMITRQVESAQKRVEGNNY 602
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 641 DIRKQLLEYDDVASDQRRAIYSQRNELLDVS-DVSETIASIREDVFKATIDSYIPPQslEEMWDVQGleerLKKDFELEM 719
Cdd:PRK12906 603 DTRKQLLQYDDVMREQREVIYKQRMQVINEDkDLKEVLMPMIKRTVDRQVQMYTQGD--KKDWDLDA----LRDFIVSAM 676
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 720 PIAEWLDKEPELHE--ETLRERIMEIAKESYARKEEVVG-AEMMRNFEKGVMLQTLDSLWKEHLAAMDYLRQGIHLRGYA 796
Cdd:PRK12906 677 PDEETFDFEDLKGKspEELKKRLLDIVEDNYAEKEKQLGdPTQMLEFEKVVILRVVDSHWTDHIDAMDQLRQSIGLRGYG 756
|
810 820 830
....*....|....*....|....*....|....*..
gi 503342340 797 QKDPKQEYKRESFAMFAAMLESLKYEVVSVLSKVQVR 833
Cdd:PRK12906 757 QLNPLVEYQEEGYRMFEEMISNIDYDVTRLFMKAQIR 793
|
|
| secA |
TIGR00963 |
preprotein translocase, SecA subunit; The proteins SecA-F and SecY, not all of which are ... |
28-819 |
0e+00 |
|
preprotein translocase, SecA subunit; The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus. This model excludes SecA2 of the accessory secretory system. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273366 [Multi-domain] Cd Length: 742 Bit Score: 1217.10 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 28 INRMEPEIQKLTDEQLQAKTNEFRERLAK-GEVLENLIPEAFAVVRESSKRVFGMRHFDVQLLGGMVLNERCIAEMRTGE 106
Cdd:TIGR00963 1 INALEEDYEKLSDEELRNKTNEFKDRLAKqGETLDDLLPEAFAVVREASKRVLGMRPFDVQLIGGIALHKGKIAEMKTGE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 107 GKTLTATLPAYLNALSGKGVHVVTVNDYLAQRDAENNRPLFEFLGLSIGINLPGMPSPAKRAAYAADITYGTNNEYGFDY 186
Cdd:TIGR00963 81 GKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLILSGMSPEERREAYACDITYGTNNELGFDY 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 187 LRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYTRVDKLipklirqekedSDSFQGEGHFSVD 266
Cdd:TIGR00963 161 LRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPAEKSTELYVQANKF-----------AKALEKEVDYEVD 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 267 EKSRQVHLTERGLVLIEELLVEagimeegESLYSPTNIMLMHHVTAALRAHVLFTRDVDYIVKDGEVIIVDEHTGRTMQG 346
Cdd:TIGR00963 230 EKNRAVLLTEQGMKKAEDLLGV-------DNLYDLENSPLIHYINNALKAKELFQKDVDYIVRDGEVVIVDEFTGRIMEG 302
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 347 RRWSDGLHQAVEAKEGVDIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTIVVPTNRPMVRKDMADL 426
Cdd:TIGR00963 303 RRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFRKIYNLEVVVVPTNRPVIRKDRPDL 382
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 427 VYMTEMEKIGAIIEDIRQCTAKGQPVLVGTISIEKSEVVSNELTKAGIAHSVLNAKFHAKEADIVAQAGQPSAVTIATNM 506
Cdd:TIGR00963 383 VYKTEEEKWKAVVEEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAKNHEREAEIIAQAGRKGAVTIATNM 462
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 507 AGRGTDIVLggswqVEVENLgeeatdekiaeikaawqirhdavlasGGLHIIGTERHESRRIDNQLRGRAGRQGDAGSSR 586
Cdd:TIGR00963 463 AGRGTDIKL-----EEVKEL--------------------------GGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSR 511
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 587 FYLSMEDALMRIFASDRVSSMMRKLGMKPGEAIEHPWVTKAIANAQRKVESRNFDIRKQLLEYDDVASDQRRAIYSQRNE 666
Cdd:TIGR00963 512 FFLSLEDNLMRIFGGDRLEGLMRRLGMDDDEPIESKMVSRALESAQKRVEGRNFDIRKQLLEYDDVLNKQREVIYAERRR 591
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 667 LLDVSDVSETIASIREDVFKATIDSYIPPQSLEEMWDVQGLEERLKKDFELEMPIAEWLDKepELHEETLRERIMEIAKE 746
Cdd:TIGR00963 592 VLESEDLSELILQMLESTLDRIVDAYINEEKLSEEWDLEGLIEKLKTLFLLDGDLTPEDLE--NLTSEDLKELLLEKIRA 669
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 503342340 747 SYARKEEVVGAEMMRNFEKGVMLQTLDSLWKEHLAAMDYLRQGIHLRGYAQKDPKQEYKRESFAMFAAMLESL 819
Cdd:TIGR00963 670 AYDEKEEQLESERMREFERYVLLQSIDRKWKEHLDAMDLLREGIGLRSYGQKDPLIEYKNEGFNLFEEMLEDI 742
|
|
| PRK09200 |
PRK09200 |
preprotein translocase subunit SecA; Reviewed |
8-824 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 236408 [Multi-domain] Cd Length: 790 Bit Score: 927.80 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 8 KVFGSRNDRTLRRMRKVVDLINRMEPEIQKLTDEQLQAKTNEFRERLAKGEVLENLIPEAFAVVRESSKRVFGMRHFDVQ 87
Cdd:PRK09200 4 KLLGDIDKRRLKKYRKIVKQINKLEGKMSSLSDEELRQKTIEFKERLASGKTLDDILPEAFAVVREAAKRVLGMRPYDVQ 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 88 LLGGMVLNERCIAEMRTGEGKTLTATLPAYLNALSGKGVHVVTVNDYLAQRDAENNRPLFEFLGLSIGINLPGMPSPA-K 166
Cdd:PRK09200 84 LIGALVLHEGNIAEMQTGEGKTLTATMPLYLNALEGKGVHLITVNDYLAKRDAEEMGQVYEFLGLTVGLNFSDIDDASeK 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 167 RAAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYTRVDKLIPKL 246
Cdd:PRK09200 164 KAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISGKPRVQSNLYHIAAKFVKTL 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 247 IRQEkedsdsfqgegHFSVDEKSRQVHLTERGLVLIEELLveaGImeegESLYSPTNIMLMHHVTAALRAHVLFTRDVDY 326
Cdd:PRK09200 244 EEDV-----------DYEFDEEKKEVWLTDQGIEKAESYF---GI----DNLYSLEHQVLYRHIILALRAHVLFKRDVDY 305
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 327 IVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVDIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYK 406
Cdd:PRK09200 306 IVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEVYN 385
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 407 LDTIVVPTNRPMVRKDMADLVYMTEMEKIGAIIEDIRQCTAKGQPVLVGTISIEKSEVVSNELTKAGIAHSVLNAKFHAK 486
Cdd:PRK09200 386 MEVVQIPTNRPIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAK 465
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 487 EADIVAQAGQPSAVTIATNMAGRGTDIVLGgswqvevenlgeeatdEKIAEIkaawqirhdavlasGGLHIIGTERHESR 566
Cdd:PRK09200 466 EAQIIAEAGQKGAVTVATNMAGRGTDIKLG----------------EGVHEL--------------GGLAVIGTERMESR 515
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 567 RIDNQLRGRAGRQGDAGSSRFYLSMEDALMRIFASDRVSSMMRKL---GMKPGEAIEHPWVTKAIANAQRKVESRNFDIR 643
Cdd:PRK09200 516 RVDLQLRGRSGRQGDPGSSQFFISLEDDLLKRFAPEELEKLKKKLktdAQRLTGLLFNRKVHKIVVKAQRISEGAGYSAR 595
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 644 KQLLEYDDVASDQRRAIYSQRNELLDVS--DVSETIASIREDVFKATIDSYIPPQSLEEMWDVQGLEERLKKD-FELEMP 720
Cdd:PRK09200 596 EYALELDDVINIQRDVVYKERNRLLEEDdrDLIDIVILMIDVYLEAVAEEYLLEKSLLEEWIYENLSFQLNEIlSNTNFP 675
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 721 iaewldkepelHEETLRERIMEIAKESYARKEEVVGA-EMMRNFEKGVMLQTLDSLWKEHLAAMDYLRQGIHLRGYAQKD 799
Cdd:PRK09200 676 -----------DKKEVVQFLLEEAEKQLKEKRNKLPSaTLYNQFLRKVALKAIDQNWVEQVDALQQLKEGIGLRQYGQRN 744
|
810 820
....*....|....*....|....*
gi 503342340 800 PKQEYKRESFAMFAAMLESLKYEVV 824
Cdd:PRK09200 745 PIREYQKEALESFEYMYENIKKDMV 769
|
|
| secA |
CHL00122 |
preprotein translocase subunit SecA; Validated |
14-824 |
0e+00 |
|
preprotein translocase subunit SecA; Validated
Pssm-ID: 214371 [Multi-domain] Cd Length: 870 Bit Score: 913.22 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 14 NDRTLRRMRKVVDLINRMEPEIQKLTDEQLQAKTNEFRERLAKGEVLENLIPEAFAVVRESSKRVFGMRHFDVQLLGGMV 93
Cdd:CHL00122 8 NKSKLNKYQTLVNQINLLEEELKNLTDTELRSKTNKLKKRLSNGQNLNKIIPESFALTREASFRTLGLRHFDVQLIGGLV 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 94 LNERCIAEMRTGEGKTLTATLPAYLNALSGKGVHVVTVNDYLAQRDAENNRPLFEFLGLSIGINLPGMPSPAKRAAYAAD 173
Cdd:CHL00122 88 LNDGKIAEMKTGEGKTLVATLPAYLNALTGKGVHIVTVNDYLAKRDQEWMGQIYRFLGLTVGLIQEGMSSEERKKNYLKD 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 174 ITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYTRVDKLIPKLIRQEked 253
Cdd:CHL00122 168 ITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEARTPLIISGQSKTNIDKYIVADELAKYLEKNV--- 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 254 sdsfqgegHFSVDEKSRQVHLTERGLVLIEELLveaGImeegESLYSPTNIMLmHHVTAALRAHVLFTRDVDYIVKDGEV 333
Cdd:CHL00122 245 --------HYEVDEKNKNVILTEQGILFIEKIL---KI----EDLYSANDPWI-PYILNALKAKELFFKNVHYIVRNNEI 308
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 334 IIVDEHTGRTMQGRRWSDGLHQAVEAKEGVDIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTIVVP 413
Cdd:CHL00122 309 IIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELEFEKIYNLEVVCIP 388
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 414 TNRPMVRKDMADLVYMTEMEKIGAIIEDIRQCTAKGQPVLVGTISIEKSEVVSNELTKAGIAHSVLNAK--FHAKEADIV 491
Cdd:CHL00122 389 THRPMLRKDLPDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKpeNVRRESEIV 468
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 492 AQAGQPSAVTIATNMAGRGTDIVLGG---------------------------------------------------SWQ 520
Cdd:CHL00122 469 AQAGRKGSITIATNMAGRGTDIILGGnpefklkkelydlllsyksnekistisqnflnilnslkndlkflslsdfenLKI 548
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 521 VEVENLGEEATDEKIAEIKAAWQIR-----------HDAVLASGGLHIIGTERHESRRIDNQLRGRAGRQGDAGSSRFYL 589
Cdd:CHL00122 549 LNEASEISIPKNSYQLSLRFLYNELlekykklqekeKKIVKKLGGLYVIGTERHESRRIDNQLRGRAGRQGDPGSSRFFL 628
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 590 SMEDALMRIFASDRVSSMMRKLGMkPGEAIEHPWVTKAIANAQRKVESRNFDIRKQLLEYDDVASDQRRAIYSQRNELLD 669
Cdd:CHL00122 629 SLEDNLLRIFGGDKIQNLMQTLNL-DDEPLESKLLSKSLDSAQKKVEEYYYDQRKQLFEYDQVLNKQRKAIYSERRKILE 707
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 670 VSDVSETIASIREDvfkaTIDSYIPPQSLEEMWDVQGLEERLKKDFELEMPIAEWLDKEPELHEETLRERIMEIAKESYA 749
Cdd:CHL00122 708 SQSLRDWILAYGEQ----VIDDIITFLKSRKNPNNKFINLINKFKELLKLPLCFNKSDLNTLNSGELKKFLYQQFWISYD 783
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 503342340 750 RKE---EVVGAEMMRNFEKGVMLQTLDSLWKEHLAAMDYLRQGIHLRGYAQKDPKQEYKRESFAMFAAMLESLKYEVV 824
Cdd:CHL00122 784 LKElylEQIGTGLMRELERSLLLQQIDKSWKEHLQKMSLLREAIGWRSYGQKDPLIEYKNEAFNLFINMINHIRHLVI 861
|
|
| secA |
PRK12901 |
preprotein translocase subunit SecA; Reviewed |
2-902 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237256 [Multi-domain] Cd Length: 1112 Bit Score: 912.48 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 2 LIKLLTKVFGSRNDRTLRRMRKVVDLINRMEPEIQKLTDEQLQAKTNEFRERLAKG------------------------ 57
Cdd:PRK12901 1 MNEFLKKLFGDKSERDLKEIQPIVEKIKAEYPELEALSNDELRAKTDEFKQYIKEAvadidakieelkaeaiesldider 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 58 -------------------EVLENLIPEAFAVVRESSKR----------------------------------------- 77
Cdd:PRK12901 81 ediyaqidklekeayeileKVLDEILPEAFAIVKETARRfaeneeievtatdfdrelaatkdfvtiegdkaiwknhwdag 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 78 ----VFGMRHFDVQLLGGMVLNERCIAEMRTGEGKTLTATLPAYLNALSGKGVHVVTVNDYLAQRDAENNRPLFEFLGLS 153
Cdd:PRK12901 161 gneiTWDMVHYDVQLIGGVVLHQGKIAEMATGEGKTLVATLPVYLNALTGNGVHVVTVNDYLAKRDSEWMGPLYEFHGLS 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 154 IG-INLPGMPSPAKRAAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDS 232
Cdd:PRK12901 241 VDcIDKHQPNSEARRKAYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSVLIDDARTPLIISGPVPKG 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 233 -----SEMYTRVDKLI--------------PKLIRQEKEDSDSFQ----------------------------------- 258
Cdd:PRK12901 321 ddqefEELKPRVERLVeaqrklatqflaeaKKLIAEGDKKEGGLAllrayrglpknkalikflseegikallqktenfym 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 259 -----------GEGHFSVDEKSRQVHLTERGLVLI------------------------EELLVEAGIMEEGESLYSPTN 303
Cdd:PRK12901 401 qdnnrempevdEELYFVIDEKNNSVELTDKGIDYItgndedpdffvlpdigtelaeienEGGLDEEEEAEKKEELFQDYS 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 304 IML--MHHVTAALRAHVLFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVDIQNENQTLASITFQNYF 381
Cdd:PRK12901 481 VKSerVHTLNQLLKAYTLFEKDDEYVVMDGKVKIVDEQTGRIMEGRRYSDGLHQAIEAKENVKIEAATQTFATITLQNYF 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 382 RLYEKLAGMTGTADTEAFEFSSIYKLDTIVVPTNRPMVRKDMADLVYMTEMEKIGAIIEDIRQCTAKGQPVLVGTISIEK 461
Cdd:PRK12901 561 RMYHKLAGMTGTAETEAGEFWDIYKLDVVVIPTNRPIARKDKEDLVYKTKREKYNAVIEEITELSEAGRPVLVGTTSVEI 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 462 SEVVSNELTKAGIAHSVLNAKFHAKEADIVAQAGQPSAVTIATNMAGRGTDIVLGgswqvevenlgeeatdekiAEIKAA 541
Cdd:PRK12901 641 SELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQPGTVTIATNMAGRGTDIKLS-------------------PEVKAA 701
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 542 wqirhdavlasGGLHIIGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDALMRIFASDRVSSMMRKLGMKPGEAIEH 621
Cdd:PRK12901 702 -----------GGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDNLMRLFGSERIAKVMDRMGLKEGEVIQH 770
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 622 PWVTKAIANAQRKVESRNFDIRKQLLEYDDVASDQRRAIYSQRNELLDVSDVSETIASIREDVFKATIDSYippqslEEM 701
Cdd:PRK12901 771 SMISKSIERAQKKVEENNFGIRKRLLEYDDVMNSQREVIYKRRRHALMGERLGMDIANMIYDVCEAIVENN------KVA 844
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 702 WDVQGLEERLKKDFELEMPIAEwlDKEPELHEETLRERIMEIAKESYARKEEVV-------------------------- 755
Cdd:PRK12901 845 NDYKGFKFELIRTLAMESPITE--EEFNKLKKDELTDKLYDAALENYQRKMERIaeiafpvikqvyeeqgnmyerivvpf 922
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 756 --------------------GAEMMRNFEKGVMLQTLDSLWKEHLAAMDYLRQGIHLRGYAQKDPKQEYKRESFAMFAAM 815
Cdd:PRK12901 923 tdgkrtlnvvtnlkeayeteGKEIVKDFEKNITLHIIDEAWKEHLREMDELKQSVQNASYEQKDPLLIYKFESFELFKNM 1002
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 816 LESLKYEVVSVLSKVQV---RMPEEVEAMEIQRREEAERLARQQQLSHQDQQEIEVAEAARLASS---GDRKVGRNDLCP 889
Cdd:PRK12901 1003 VDKVNREVISFLFKGEIpvqEAPEIREAAPERRLDPKYRTQKEEIQDSDQRAAASRDTGAQVKETpvrVEKKIGRNDPVP 1082
|
1130
....*....|....*...
gi 503342340 890 C-----GSGKKYKQCHGR 902
Cdd:PRK12901 1083 CqnvdgGSGKKYKFKHAE 1100
|
|
| SecA2_Bac_anthr |
TIGR04397 |
accessory Sec system translocase SecA2, Bacillus type; Members of this family always occur in ... |
6-829 |
0e+00 |
|
accessory Sec system translocase SecA2, Bacillus type; Members of this family always occur in genomes with the preprotein translocase SecA (TIGR00963) and closely resemble it, hence the designation SecA2. However, this appears to mark a different type of accessory Sec system SecA2 (TIGR03714) from the serine-rich glycoprotein type found in Staphylococcus and Streptococcus, and the actinobacterial SecA2 (TIGR04221). This type occurs in species including Bacillus anthracis, Geobacillus thermoglucosidasius, Solibacillus silvestris, etc. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 275190 [Multi-domain] Cd Length: 774 Bit Score: 885.23 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 6 LTKVFGSRNDRTLRRMRKVVDLINRMEPEIQKLTDEQLQAKTNEFRERLAKGEVLENLIPEAFAVVRESSKRVFGMRHFD 85
Cdd:TIGR04397 1 VKKLKGDSSARELKRYEKLVAQINELEPKMEKLSDEELRQKTITFKERLEDGKTVDDIKVEAFAVVREASKRVLGMRHYD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 86 VQLLGGMVLNERCIAEMRTGEGKTLTATLPAYLNALSGKGVHVVTVNDYLAQRDAENNRPLFEFLGLSIGINLPGMPSPA 165
Cdd:TIGR04397 81 VQLIGGLVLLEGNIAEMPTGEGKTLVASLPSYLRALEGKGVHVITVNDYLARRDRELIGQIHEFLGLTVGLNVPMMEASE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 166 KRAAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYtrvdKLIPK 245
Cdd:TIGR04397 161 KKEAYQADITYGVGTEFGFDYLRDNMVYSLSDKVQRPYHFAIIDEIDSVLIDEAKTPLIIAGKTGSSSELH----YICAR 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 246 LIRqekedsdSFQGEGHFSVDEKSRQVHLTERGLVLIEELLveaGImeegESLYSPTNIMLMHHVTAALRAHVLFTRDVD 325
Cdd:TIGR04397 237 IIK-------SFEETEDYEYDPETKAASLTEEGITKIERAF---GI----DNLYDLEHQTLYHYLIQALRAHVLFKRDVD 302
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 326 YIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVDIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIY 405
Cdd:TIGR04397 303 YIVKDGKIELVDMFTGRIMEGRSLSDGLHQAIEAKEGLEITEENKTQASITIQNYFRMYPKLSGMTGTAKTEEKEFRETY 382
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 406 KLDTIVVPTNRPMVRKDMADLVYMTEMEKIGAIIEDIRQCTAKGQPVLVGTISIEKSEVVSNELTKAGIAHSVLNAKFHA 485
Cdd:TIGR04397 383 GMDVVQIPTNRPRIRVDWPDRVFMTYEAKYKAVAKEVKKRHETGQPILIGTTSILQSETVAKYLDKEKIPYQLLNAKTVE 462
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 486 KEADIVAQAGQPSAVTIATNMAGRGTDIVLGgswqvevenlgeeatdEKIAEIkaawqirhdavlasGGLHIIGTERHES 565
Cdd:TIGR04397 463 QEADLIALAGQKGQVTIATNMAGRGTDILLG----------------EGVHEL--------------GGLHVIGTERHES 512
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 566 RRIDNQLRGRAGRQGDAGSSRFYLSMEDALMRIFASDRVSSMMRKlgMKPGEA--IEHPWVTKAIANAQRKVESRNFDIR 643
Cdd:TIGR04397 513 RRIDNQLRGRSGRQGDPGSSQFIISLEDDMFRRYAAEELEKWKKK--LKTDETgeILNKDVHEFVDKVQRIIEGSHYSAR 590
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 644 KQLLEYDDVASDQRRAIYSQRNELLDVSDVSETIASIREDVFKATIDSYIPPQSLEEMWDVQGLEERLKKDFELEmpiAE 723
Cdd:TIGR04397 591 EYNLKLDDVINEQRNVIYQLRDKLLEEEDAISEVLKMIRSAVEQIIDQYCPEEVLPEEWDLERLTEELNRIFPVT---FV 667
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 724 WLDKEPELHEEtLRERIMEIAKESYARKEEVVGAEMMRNFEKGVMLQTLDSLWKEHLAAMDYLRQGIHLRGYAQKDPKQE 803
Cdd:TIGR04397 668 TFDKRIADKEE-LKDLVKDTYEQYIAALEKLPENEEIQMRLKHVMLSVIDAHWTRHLDAMNLLKEGIGLRSYQQEDPMRL 746
|
810 820
....*....|....*....|....*.
gi 503342340 804 YKRESFAMFAAMLESLKYEVVSVLSK 829
Cdd:TIGR04397 747 YQKEGLELFEAMYQNIEREICTELAR 772
|
|
| secA |
PRK12903 |
preprotein translocase subunit SecA; Reviewed |
8-830 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237258 [Multi-domain] Cd Length: 925 Bit Score: 862.82 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 8 KVFGSRNdRTLRRMRKVVDLINRMEPEIQKLTDEQLQAKTNEFRERLAKGEVLENLIPEAFAVVRESSKRVFGMRHFDVQ 87
Cdd:PRK12903 5 KLFFFKS-TEMRIAEKILKQINDLEPYYRNLTDEELANKTNEFKDRLKNGETLEDIRVEAFAVAREATKRVLGKRPYDVQ 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 88 LLGGMVLNERCIAEMRTGEGKTLTATLPAYLNALSGKGVHVVTVNDYLAQRDAENNRPLFEFLGLSIGINLPGMPSPAKR 167
Cdd:PRK12903 84 IIGGIILDLGSVAEMKTGEGKTITSIAPVYLNALTGKGVIVSTVNEYLAERDAEEMGKVFNFLGLSVGINKANMDPNLKR 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 168 AAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYTRVDKLIPKLI 247
Cdd:PRK12903 164 EAYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLIISGGQSNDSNLYLAADQFVRTLK 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 248 rqekedsdsfqgEGHFSVDEKSRQVHLTERGlvlIEellvEAGIMEEGESLYSPTNIMLMHHVTAALRAHVLFTRDVDYI 327
Cdd:PRK12903 244 ------------EDDYKIDEETKAISLTEKG---IK----KANKFFKLKNLYDIENSELVHRIQNALRAHKVMKEDVEYI 304
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 328 VKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVDIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKL 407
Cdd:PRK12903 305 VRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFIDIYNM 384
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 408 DTIVVPTNRPMVRKDMADLVYMTEMEKIGAIIEDIRQCTAKGQPVLVGTISIEKSEVVSNELTKAGIAHSVLNAKFHAKE 487
Cdd:PRK12903 385 RVNVVPTNKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQNARE 464
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 488 ADIVAQAGQPSAVTIATNMAGRGTDIvlggswqveveNLGEEatdekiaeikaawqirhdaVLASGGLHIIGTERHESRR 567
Cdd:PRK12903 465 AEIIAKAGQKGAITIATNMAGRGTDI-----------KLSKE-------------------VLELGGLYVLGTDKAESRR 514
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 568 IDNQLRGRAGRQGDAGSSRFYLSMEDALMRIFAS-DRVSSMMRKLGmkpGEAIEHPWVTKAIANAQRKVESRNFDIRKQL 646
Cdd:PRK12903 515 IDNQLRGRSGRQGDVGESRFFISLDDQLFRRFSNfDKIKEAFKKLG---DDEIKSKFFSKALLNAQKKIEGFNFDTRKNV 591
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 647 LEYDDVASDQRRAIYSQRNELLDVSDVSETIASIREDVFKATIDSYIPPQSlEEMWDVQGLEERLKKDFELEMPIAEWLD 726
Cdd:PRK12903 592 LDYDDVIRQQRDLIYAQRDLILIADDLSHVIEKMISRAVEQILKNSFIILK-NNTINYKELVEFLNDNLLRITHFKFSEK 670
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 727 KEPELHEETLRERIMEIAKESYARKEEV----VGAEMMRNFEKGVMLQTLDSLWKEHLAAMDYLRQGIHLRGYAQKDPKQ 802
Cdd:PRK12903 671 DFENYHKEELAQYLIEALNEIYFKKRQVildkIALNTFFESERYIILSALDKYWQNHIDTMDKLRSGVNLVQYSQKNPYQ 750
|
810 820
....*....|....*....|....*...
gi 503342340 803 EYKRESFAMFAAMLESLKYEVVSVLSKV 830
Cdd:PRK12903 751 VYTEEGTKKFNILLQEIAYDVIVSLFNN 778
|
|
| SecA_DEAD |
smart00957 |
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with ... |
6-401 |
0e+00 |
|
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the.
Pssm-ID: 214937 [Multi-domain] Cd Length: 380 Bit Score: 758.50 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 6 LTKVFGSRNDRTLRRMRKVVDLINRMEPEIQKLTDEQLQAKTNEFRERLAKGEVLENLIPEAFAVVRESSKRVFGMRHFD 85
Cdd:smart00957 1 LKKLFGSKNDRELKRLRKIVDQINALEPEMEALSDEELRAKTAEFKERLAEGESLDDLLPEAFAVVREAAKRVLGMRHFD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 86 VQLLGGMVLNERCIAEMRTGEGKTLTATLPAYLNALSGKGVHVVTVNDYLAQRDAENNRPLFEFLGLSIGINLPGMPSPA 165
Cdd:smart00957 81 VQLIGGIVLHEGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLTVGVIVSGMSPEE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 166 KRAAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAED-SSEMYTRVDKLIP 244
Cdd:smart00957 161 RRAAYAADITYGTNNEFGFDYLRDNMAFSKEDKVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDeSSDLYHRADKFVP 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 245 KLIRQEkedsdsfqgegHFSVDEKSRQVHLTERGLVLIEELLVEagimeegESLYSPTNIMLMHHVTAALRAHVLFTRDV 324
Cdd:smart00957 241 RLKEDE-----------DYTVDEKSRTVELTEEGIEKAEKLLGI-------DNLYDPENIELLHHVNQALRAHYLFKRDV 302
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 503342340 325 DYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVDIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEF 401
Cdd:smart00957 303 DYIVRDGEVVIVDEFTGRVMEGRRYSDGLHQAIEAKEGVEIQEENQTLATITFQNYFRMYKKLSGMTGTAKTEAEEF 379
|
|
| secA2 |
TIGR03714 |
accessory Sec system translocase SecA2; Members of this protein family are homologous to SecA ... |
14-820 |
0e+00 |
|
accessory Sec system translocase SecA2; Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 163426 [Multi-domain] Cd Length: 762 Bit Score: 701.80 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 14 NDRTLRRMRKVVDLINRMEPEIQKLTDEQLQAKTNEFRERLAKGEVLENLIPEAFAVVRESSKRVFGMRHFDVQLLGGMV 93
Cdd:TIGR03714 2 NNLRLKKLRKILNKINALKGKMATLSDEELQAKTAEFKNRLVEGESLDDILPEAYAVVREADKRVLGMFPYDVQVLGAIV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 94 LNERCIAEMRTGEGKTLTATLPAYLNALSGKGVHVVTVNDYLAQRDAENNRPLFEFLGLSIGINLPGMP-----SPAKRA 168
Cdd:TIGR03714 82 LHQGNIAEMKTGEGKTLTATMPLYLNALTGKGAMLVTTNDYLAKRDAEEMGPVYEWLGLTVSLGVVDDPdeeydANEKRK 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 169 AYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYTRVDKLIPKLIR 248
Cdd:TIGR03714 162 IYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVISGAPRVQSNLYHIADTFVRTLKE 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 249 QEkedsdsfqgegHFSVDEKSRQVHLTERGLVLIEELLveaGImeegESLYSPTNIMLMHHVTAALRAHVLFTRDVDYIV 328
Cdd:TIGR03714 242 DV-----------DYIFKKDKKEVWLTDKGIEKAEQYF---KI----DNLYSEEYFELVRHINLALRAHYLFKRNKDYVV 303
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 329 KDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVDIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLD 408
Cdd:TIGR03714 304 TNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIETYSLS 383
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 409 TIVVPTNRPMVRKDMADLVYMTEMEKIGAIIEDIRQCTAKGQPVLVGTISIEKSEVVSNELTKAGIAHSVLNAKFHAKEA 488
Cdd:TIGR03714 384 VVKIPTNKPIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEA 463
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 489 DIVAQAGQPSAVTIATNMAGRGTDIVLGgswqvevenlgeeatdEKIAEIkaawqirhdavlasGGLHIIGTERHESRRI 568
Cdd:TIGR03714 464 QIIAEAGQKGAVTVATSMAGRGTDIKLG----------------KGVAEL--------------GGLAVIGTERMENSRV 513
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 569 DNQLRGRAGRQGDAGSSRFYLSMEDALMRIFASDRVSSMMRKLGMKPG----EAIEHPWVTKAIANAQRKVESRNFDIRK 644
Cdd:TIGR03714 514 DLQLRGRSGRQGDPGSSQFFVSLEDDLIKRWSPSWLKKYYKKYSVKDSklkpSALFKRRFRKIVEKAQRASEDKGESARE 593
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 645 QLLEYDDVASDQRRAIYSQRNELLDVSDVSET-IASIREDVFkatiDSYIPPQSLEEMWDV-----QGLEERLKKDFele 718
Cdd:TIGR03714 594 QTNEFEESLSIQRENIYAERNRLIEGSDFLDDdVDQIIDDVF----NMYAEEQDLSNKSLLkrfilENLSYQFKNDP--- 666
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 719 mpiaewldKEPELH-EETLRERIMEIAKESYARKEEVVGAEMMRN-FEKGVMLQTLDSLWKEHLaamDYLRQ---GIHLR 793
Cdd:TIGR03714 667 --------DEFDLKnKEAIKDFLKEIADKELSEKKKVLNNDYLFNdFERLSILKAIDENWIEQV---DYLQQlktVVTNR 735
|
810 820
....*....|....*....|....*..
gi 503342340 794 GYAQKDPKQEYKRESFAMFAAMLESLK 820
Cdd:TIGR03714 736 QNGQRNPIFEYHKEALESYEYMKKEIK 762
|
|
| SecA_DEAD |
pfam07517 |
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with ... |
6-402 |
0e+00 |
|
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the pfam00270.
Pssm-ID: 462190 [Multi-domain] Cd Length: 379 Bit Score: 688.46 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 6 LTKVFGSRNDRTLRRMRKVVDLINRMEPEIQKLTDEQLQAKTNEFRERLAKGEVLENLIPEAFAVVRESSKRVFGMRHFD 85
Cdd:pfam07517 1 LKKIFGSPNERDLKRLRKIVDQINALEEELKALSDEELRAKTDELRERLREGESLDDILPEAFALVREAAKRVLGMRHYD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 86 VQLLGGMVLNERCIAEMRTGEGKTLTATLPAYLNALSGKGVHVVTVNDYLAQRDAENNRPLFEFLGLSIGINLPGMPSPA 165
Cdd:pfam07517 81 VQLIGGLVLHEGKIAEMKTGEGKTLTATLPAYLNALSGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLTVGVITSDMDPEE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 166 KRAAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYTRVDKLIPK 245
Cdd:pfam07517 161 RRAAYNADITYGTNNELGFDYLRDNMATSKEDKVQRGLNFAIVDEVDSILIDEARTPLIISGPSEDDSELYREADRLVKS 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 246 LirqekedsdsfQGEGHFSVDEKSRQVHLTERGLVLIEELLveagimeEGESLYSPTNIMLMHHVTAALRAHVLFTRDVD 325
Cdd:pfam07517 241 L-----------EEDGDYEIDEKSKNVELTEKGIEKIEKLL-------GIDNLYDPENVELLHHINQALKAHHLFKRDVD 302
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 503342340 326 YIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVDIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFS 402
Cdd:pfam07517 303 YIVRDGEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEITPESQTLASITYQNFFRLYPKLSGMTGTAKTEAEEFR 379
|
|
| secA |
PRK12898 |
preprotein translocase subunit SecA; Reviewed |
1-650 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237253 [Multi-domain] Cd Length: 656 Bit Score: 659.01 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 1 MLIKLLTKVFGSRNDRTLRRMRKVVDLINRMEPEIQKLTDEQLQAKTNEFRERL-AKGEVLENLIPEAFAVVRESSKRVF 79
Cdd:PRK12898 21 WLERVLGRLAGRVRGRAARRQRLLADRVLAAAEALAGLSEEALRARSLALRARLrARDGFRDALLAEAFALVREASGRVL 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 80 GMRHFDVQLLGGMVLNERCIAEMRTGEGKTLTATLPAYLNALSGKGVHVVTVNDYLAQRDAENNRPLFEFLGLSIGINLP 159
Cdd:PRK12898 101 GQRHFDVQLMGGLALLSGRLAEMQTGEGKTLTATLPAGTAALAGLPVHVITVNDYLAERDAELMRPLYEALGLTVGCVVE 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 160 GMPSPAKRAAYAADITYGTNNEYGFDYLRDNMAF-------------------SPEERVQRKLHYALVDEVDSILIDEAR 220
Cdd:PRK12898 181 DQSPDERRAAYGADITYCTNKELVFDYLRDRLALgqrasdarlaleslhgrssRSTQLLLRGLHFAIVDEADSVLIDEAR 260
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 221 TPLIISGPAEDSSEMytrvdklipKLIRQEKEDSDSFQGEGHFSVDEKSRQVHLTERGLVLIEELLveagimeegESLYS 300
Cdd:PRK12898 261 TPLIISAPAKEADEA---------EVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELA---------ESLPP 322
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 301 PTNIMLMHH--VTAALRAHVLFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVDIQNENQTLASITFQ 378
Cdd:PRK12898 323 AWRGAVRREelVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQ 402
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 379 NYFRLYEKLAGMTGTADTEAFEFSSIYKLDTIVVPTNRPMVRKDMADLVYMTEMEKIGAIIEDIRQCTAKGQPVLVGTIS 458
Cdd:PRK12898 403 RFFRRYLRLAGMTGTAREVAGELWSVYGLPVVRIPTNRPSQRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRS 482
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 459 IEKSEVVSNELTKAGIAHSVLNAKFHAKEADIVAQAGQPSAVTIATNMAGRGTDIVLGgswqvevenlgeeatdekiaei 538
Cdd:PRK12898 483 VAASERLSALLREAGLPHQVLNAKQDAEEAAIVARAGQRGRITVATNMAGRGTDIKLE---------------------- 540
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 539 kaawqirhDAVLASGGLHIIGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDALMRIFASDRVSSMMRKLGMKPGEA 618
Cdd:PRK12898 541 --------PGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEAILSLEDDLLQSFLGSRGLAIRRMELLGPRGG 612
|
650 660 670
....*....|....*....|....*....|..
gi 503342340 619 ieHPWVTKAIANAQRKVESRNFDIRKQLLEYD 650
Cdd:PRK12898 613 --RALGALLLRRAQRRAERLHARARRALLHAD 642
|
|
| SecA2_Mycobac |
TIGR04221 |
accessory Sec system translocase SecA2, Actinobacterial type; Members of this family are the ... |
8-817 |
0e+00 |
|
accessory Sec system translocase SecA2, Actinobacterial type; Members of this family are the SecA2 subunit of the Mycobacterial type of accessory secretory system. This family is quite different SecA2 of the Staph/Strep type (TIGR03714).
Pssm-ID: 275062 [Multi-domain] Cd Length: 762 Bit Score: 558.67 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 8 KVFGSRNDRTLRRMRKVVDLINRMEPEIQKLTDEQLQAKTnefRERLAKGEVLEnlIPEAFAVVRESSKRVFGMRHFDVQ 87
Cdd:TIGR04221 7 KALGSSTERNQKRSLAIVPAAASRMKELSALDDEELTKAA---RDLVLSGEAAD--AAQFLAILREAAERTLGMRPFDVQ 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 88 LLGGMVLNERCIAEMRTGEGKTLTATLPAYLNALSGKGVHVVTVNDYLAQRDAENNRPLFEFLGLSIGINLPGMPSPAKR 167
Cdd:TIGR04221 82 LLGALRLLAGDVIEMATGEGKTLAGAMAATGFALLGKRVHVVTVNDYLARRDAEWMGPLVDFFGLTVGWVTEDSTPDERR 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 168 AAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYTrvdklIPKLI 247
Cdd:TIGR04221 162 AAYACDVTYASVNEIGFDVLRDQLVTDRADLVQPAADVALIDEADSVLVDEALVPLVLAGNEPGEAPRGR-----ITDLV 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 248 RQEKEDSdsfqgegHFSVDEKSRQVHLTERGLVLIEELLveagimeEGESLYSPTNI-MLMHHVTAALRAHVLFTRDVDY 326
Cdd:TIGR04221 237 RRLREDK-------HYTVDEDGRNVHLTEDGARAVEAEL-------GIDDLYSEEHVgTTLVQVNVALHAHALLIRDVHY 302
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 327 IVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVDIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYK 406
Cdd:TIGR04221 303 IVRDGKVALIDASRGRVAQLQRWPDGLQAAVEAKEGLEVTEGGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQFYD 382
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 407 LDTIVVPTNRPMVRKDMADLVYMTEMEKIGAIIEDIRQCTAKGQPVLVGTISIEKSEVVSNELTKAGIAHSVLNAKFHAK 486
Cdd:TIGR04221 383 LGVSVIPPNTPNIRFDEADRVYATAAEKNDAIVEEIAEVHKTGQPVLVGTQDVAESEELAEALLEAGVPCNVLNAKNDAE 462
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 487 EADIVAQAGQPSAVTIATNMAGRGTDIVLGGSWQVEvenlgeeatdekiaeikaawqirHDAVLASGGLHIIGTERHESR 566
Cdd:TIGR04221 463 EAAIIAEAGDIGAVTVSTQMAGRGTDIRLGGSDEAD-----------------------HDRVAELGGLHVIGTGRHRTA 519
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 567 RIDNQLRGRAGRQGDAGSSRFYLSMEDALMrifasdRVSSMMRKLGMKPGE--AIEHPWVTKAIANAQRKVESRNFDIRK 644
Cdd:TIGR04221 520 RLDNQLRGRAGRQGDPGSSVFFVSLEDDVV------AVGGAGETVPAQPAEdgRIESPRVQDFVDHAQRVAEGQLLEIHA 593
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 645 QLLEYDDVASDQRRAIYSQRNELLDvSDVSetiasiREDVFKATIDSYippqsleemwdvqgleerlkkdfelempiaew 724
Cdd:TIGR04221 594 NTWRYNQLIAQQRDIIDERRETLLD-TDTA------WQELSERAADRA-------------------------------- 634
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 725 ldkePELHEETLRERIMEIAKEsyarkeevvgaemmrnfekgVMLQTLDSLWKEHLAAMDYLRQGIHLRGYAQKDPKQEY 804
Cdd:TIGR04221 635 ----AELKKEVSEDALERAARE--------------------IMLYHLDRGWAEHLAYLDDVRESIHLRALGRETPLDEF 690
|
810
....*....|...
gi 503342340 805 KRESFAMFAAMLE 817
Cdd:TIGR04221 691 HRMAVRAFKELAQ 703
|
|
| DEXDc_SecA |
cd17928 |
DEXD-box helicase domain of SecA; SecA is a part of the Sec translocase that transports the ... |
42-414 |
9.97e-130 |
|
DEXD-box helicase domain of SecA; SecA is a part of the Sec translocase that transports the vast majority of bacterial and ER-exported proteins. SecA binds both the signal sequence and the mature domain of the preprotein emerging from the ribosome. SecA belongs to the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350686 [Multi-domain] Cd Length: 230 Bit Score: 388.82 E-value: 9.97e-130
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 42 QLQAKTNEFRERLAKGEVLENLIPEAFAVVRESSKRVFGMRHFDVQLLGGMVLNERCIAEMRTGEGKTLTATLPAYLNAL 121
Cdd:cd17928 1 ELRAKTDELRERLAKGETLDDLLPEAFALVREAARRVLGMRPFDVQLIGGLVLHEGKIAEMKTGEGKTLTATLPAYLNAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 122 SGKGVHVVTVNDYLAQRDAENNRPLFEFLGLSIGINLPGMPSPAKRAAYAADITYGTNNEYGFDYLRDNMAFSPEERVQR 201
Cdd:cd17928 81 TGKGVHVVTVNDYLARRDAEWMGPLYEFLGLTVGVILSDMSPDERREAYAADITYGTNNELGFDYLRDNMVTSKEDLVQR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 202 KLHYALVDEVDSILIDEARTPLIISGpaedssemytrvdklipklirqekedsdsfqgeghfsvdeksrqvhlterglvl 281
Cdd:cd17928 161 GLNFAIVDEVDSILIDEARTPLIISG------------------------------------------------------ 186
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 282 ieellveagimeegeslysptnimlmhhvtaalrahvlftrdvdyivkdgeviivdehtgrtmqgrrwsdglhqaveake 361
Cdd:cd17928 --------------------------------------------------------------------------------
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 503342340 362 gvdiqnenqTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTIVVPT 414
Cdd:cd17928 187 ---------TLATITFQNYFRLYPKLAGMTGTAKTEAEEFREIYNLDVVVIPT 230
|
|
| SecA_SW |
pfam07516 |
SecA Wing and Scaffold domain; SecA protein binds to the plasma membrane where it interacts ... |
618-831 |
6.79e-106 |
|
SecA Wing and Scaffold domain; SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This family is composed of two C-terminal alpha helical subdomains: the wing and scaffold subdomains.
Pssm-ID: 462189 [Multi-domain] Cd Length: 213 Bit Score: 325.99 E-value: 6.79e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 618 AIEHPWVTKAIANAQRKVESRNFDIRKQLLEYDDVASDQRRAIYSQRNELLDVSDVSETIASIREDVFKATIDSYIPPQS 697
Cdd:pfam07516 1 PIEHKMVSKAIENAQKKVEGRNFDIRKNLLEYDDVMNQQREVIYAQRREILEGEDLKEDILEMIEDVVDDIVDEYIPPEE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 698 LEEMWDVQGLEERLKKDFELEMPIAEWLDkEPELHEETLRERIMEIAKESYARKEEVVGAEMMRNFEKGVMLQTLDSLWK 777
Cdd:pfam07516 81 SPEEWDLEGLKEALNEIFGLELPISEWEE-EEDLDKEELKERLLEAAEEAYEEKEEEIGPELMRELERVVLLQVIDSKWK 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 503342340 778 EHLAAMDYLRQGIHLRGYAQKDPKQEYKRESFAMFAAMLESLKYEVVSVLSKVQ 831
Cdd:pfam07516 160 EHLDAMDQLRQGIGLRAYGQKDPLVEYKREGFELFEEMLDAIREEVVRYLFRVQ 213
|
|
| SF2_C_secA |
cd18803 |
C-terminal helicase domain of the protein translocase subunit secA; SecA is a component of the ... |
420-590 |
2.32e-76 |
|
C-terminal helicase domain of the protein translocase subunit secA; SecA is a component of the Sec translocase that transports the vast majority of bacterial and ER-exported proteins. SecA binds both the signal sequence and the mature domain of the preprotein emerging from the ribosome. SecA is a DEAD-like helicase belonging to superfamily (SF)2, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. Similar to SF1 helicases, SF2 helicases do not form toroidal structures like SF3-6 helicases. Their helicase core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.
Pssm-ID: 350190 [Multi-domain] Cd Length: 141 Bit Score: 245.15 E-value: 2.32e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 420 RKDMADLVYMTEMEKIGAIIEDIRQCTAKGQPVLVGTISIEKSEVVSNELTKAGIAHSVLNAKFHAKEADIVAQAGQPSA 499
Cdd:cd18803 1 RKDLPDLVYKTEEEKWKAIVEEVKELHAKGQPVLVGTRSVEKSELLSALLKEEGIPHNVLNAKNHAREAEIIAEAGQKGA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 500 VTIATNMAGRGTDIVLGGswqvEVENLgeeatdekiaeikaawqirhdavlasGGLHIIGTERHESRRIDNQLRGRAGRQ 579
Cdd:cd18803 81 VTIATNMAGRGTDIKLGG----NVEEL--------------------------GGLHVIGTERHESRRIDNQLRGRAGRQ 130
|
170
....*....|.
gi 503342340 580 GDAGSSRFYLS 590
Cdd:cd18803 131 GDPGSSRFYLS 141
|
|
| SecA_PP_bind |
smart00958 |
SecA preprotein cross-linking domain; The SecA ATPase is involved in the insertion and ... |
228-358 |
1.11e-58 |
|
SecA preprotein cross-linking domain; The SecA ATPase is involved in the insertion and retraction of preproteins through the plasma membrane. This domain has been found to cross-link to preproteins, thought to indicate a role in preprotein binding. The pre-protein cross-linking domain is comprised of two sub domains that are inserted within the ATPase domain.
Pssm-ID: 214938 [Multi-domain] Cd Length: 114 Bit Score: 195.75 E-value: 1.11e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 228 PAEDSSEMYTRVDKLIPKLIRQEKedsdsfqgegHFSVDEKSRQVHLTERGLVLIEELLVEagimeegESLYSPTNIMLM 307
Cdd:smart00958 1 PAEDSSELYKRADELVPTLKKDEE----------DYEVDEKSRQVALTEEGIEKAEKLLGI-------DNLYDPENIELV 63
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 503342340 308 HHVTAALRAHVLFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVE 358
Cdd:smart00958 64 HHVNQALRAHKLFKRDVDYIVRDGEVVIVDEFTGRVMPGRRWSDGLHQAIE 114
|
|
| SecA_PP_bind |
pfam01043 |
SecA preprotein cross-linking domain; The SecA ATPase is involved in the insertion and ... |
231-358 |
2.10e-54 |
|
SecA preprotein cross-linking domain; The SecA ATPase is involved in the insertion and retraction of preproteins through the plasma membrane. This domain has been found to cross-link to preproteins, thought to indicate a role in preprotein binding. The pre-protein cross-linking domain is comprised of two sub domains that are inserted within the ATPase domain.
Pssm-ID: 460039 [Multi-domain] Cd Length: 110 Bit Score: 183.77 E-value: 2.10e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 231 DSSEMYTRVDKLIPKLIRQEkedsdsfqgegHFSVDEKSRQVHLTERGLVLIEELLveaGImeegESLYSPTNIMLMHHV 310
Cdd:pfam01043 1 KSTELYRQADKFVKQLKEDE-----------DYEVDEKAKTVELTEEGIEKAEKLL---GI----DNLYDPENIELVHHI 62
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 503342340 311 TAALRAHVLFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVE 358
Cdd:pfam01043 63 NQALKAHHLFKRDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIE 110
|
|
| SF2-N |
cd00046 |
N-terminal DEAD/H-box helicase domain of superfamily 2 helicases; The DEAD/H-like superfamily ... |
95-224 |
8.45e-17 |
|
N-terminal DEAD/H-box helicase domain of superfamily 2 helicases; The DEAD/H-like superfamily 2 helicases comprise a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This N-terminal domain contains the ATP-binding region.
Pssm-ID: 350668 [Multi-domain] Cd Length: 146 Bit Score: 78.21 E-value: 8.45e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 95 NERCIAEMRTGEGKTLTATLPAYLNALS-GKGVHVVTVNDYLAQRDAENNRPLFeFLGLSIGINLPGMPSP--AKRAAYA 171
Cdd:cd00046 1 GENVLITAPTGSGKTLAALLAALLLLLKkGKKVLVLVPTKALALQTAERLRELF-GPGIRVAVLVGGSSAEerEKNKLGD 79
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 503342340 172 ADITYGTNNEYGFDYLRDnmafspEERVQRKLHYALVDEVDSILIDEARTPLI 224
Cdd:cd00046 80 ADIIIATPDMLLNLLLRE------DRLFLKDLKLIIVDEAHALLIDSRGALIL 126
|
|
| YecA |
COG3318 |
Uncharacterized conserved protein YecA, UPF0149 family, contains C-terminal Zn-binding SEC-C ... |
881-902 |
1.11e-11 |
|
Uncharacterized conserved protein YecA, UPF0149 family, contains C-terminal Zn-binding SEC-C motif [Function unknown];
Pssm-ID: 442547 [Multi-domain] Cd Length: 45 Bit Score: 60.30 E-value: 1.11e-11
|
| SEC-C |
pfam02810 |
SEC-C motif; The SEC-C motif found in the C-terminus of the SecA protein, in the middle of ... |
884-902 |
2.25e-10 |
|
SEC-C motif; The SEC-C motif found in the C-terminus of the SecA protein, in the middle of some SWI2 ATPases and also solo in several proteins. The motif is predicted to chelate zinc with the CXC and C[HC] pairs that constitute the most conserved feature of the motif. It is predicted to be a potential nucleic acid binding domain.
Pssm-ID: 460704 [Multi-domain] Cd Length: 19 Bit Score: 55.95 E-value: 2.25e-10
|
| PRK05590 |
PRK05590 |
hypothetical protein; Provisional |
881-902 |
5.80e-10 |
|
hypothetical protein; Provisional
Pssm-ID: 235521 Cd Length: 166 Bit Score: 58.83 E-value: 5.80e-10
|
| DEAD-like_helicase_N |
cd17912 |
N-terminal helicase domain of the DEAD-box helicase superfamily; The DEAD-like helicase ... |
98-139 |
3.77e-09 |
|
N-terminal helicase domain of the DEAD-box helicase superfamily; The DEAD-like helicase superfamily is a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. The N-terminal domain contains the ATP-binding region.
Pssm-ID: 350670 [Multi-domain] Cd Length: 81 Bit Score: 54.06 E-value: 3.77e-09
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 503342340 98 CIAEMRTGEGKTLTATLPAYLNALSGKGVHVVTVNDYLAQRD 139
Cdd:cd17912 2 ILHLGPTGSGKTLVAIQKIASAMSSGKSVLVVTPTKLLAHEI 43
|
|
| PRK01617 |
PRK01617 |
hypothetical protein; Provisional |
881-902 |
8.86e-08 |
|
hypothetical protein; Provisional
Pssm-ID: 234966 Cd Length: 154 Bit Score: 52.34 E-value: 8.86e-08
|
| DEAD-like_helicase_C |
cd09300 |
C-terminal helicase domain of the DEAD-like helicases; This hierarchy of DEAD-like helicases ... |
551-588 |
1.46e-07 |
|
C-terminal helicase domain of the DEAD-like helicases; This hierarchy of DEAD-like helicases is composed of two superfamilies, SF1 and SF2, that share almost identical folds and extensive structural similarity in their catalytic core. Helicases are involved in ATP-dependent RNA or DNA unwinding. Two distinct types of helicases exist, those forming toroidal, predominantly hexameric structures, and those that do not. SF1 and SF2 helicases do not form toroidal structures, while SF3-6 helicases do. Their conserved helicase core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.
Pssm-ID: 350171 [Multi-domain] Cd Length: 59 Bit Score: 49.08 E-value: 1.46e-07
10 20 30
....*....|....*....|....*....|....*...
gi 503342340 551 ASGGLHIIGTERHESRRIDNQLRGRAGRQGDAGSSRFY 588
Cdd:cd09300 21 APELNTIIVDKNLRSYRGLNQAFGRANRIYTFGGIVTY 58
|
|
| SWIM_PBPRA1643 |
TIGR04102 |
SWIM/SEC-C metal-binding motif protein, PBPRA1643 family; Members of this protein family have ... |
879-901 |
1.81e-06 |
|
SWIM/SEC-C metal-binding motif protein, PBPRA1643 family; Members of this protein family have a SWIM, or SEC-C, domain (see pfam02810), a 21-amino acid putative Zn-binding domain that is shared with SecA, plant MuDR transposases, etc. This small protein family of unknown function occurs primarily in marine bacteria.
Pssm-ID: 200353 [Multi-domain] Cd Length: 108 Bit Score: 47.30 E-value: 1.81e-06
|
| PRK10396 |
PRK10396 |
hypothetical protein; Provisional |
881-899 |
3.37e-06 |
|
hypothetical protein; Provisional
Pssm-ID: 236680 [Multi-domain] Cd Length: 221 Bit Score: 48.97 E-value: 3.37e-06
|
| PRK02250 |
PRK02250 |
hypothetical protein; Provisional |
865-901 |
2.00e-05 |
|
hypothetical protein; Provisional
Pssm-ID: 179393 [Multi-domain] Cd Length: 166 Bit Score: 46.02 E-value: 2.00e-05
10 20 30
....*....|....*....|....*....|....*...
gi 503342340 865 EIEVAEAARLASS-GDRKVGRNDLCPCGSGKKYKQCHG 901
Cdd:PRK02250 129 EEEPEQDPRLNQSvSSLKQGRNDPCICGSGKKFKKCCG 166
|
|
| PRK00183 |
PRK00183 |
hypothetical protein; Provisional |
881-899 |
1.34e-04 |
|
hypothetical protein; Provisional
Pssm-ID: 166842 Cd Length: 157 Bit Score: 43.25 E-value: 1.34e-04
|
| YchJ |
COG3012 |
Uncharacterized conserved protein YchJ, contains N- and C-terminal SEC-C domains [Function ... |
883-903 |
1.37e-03 |
|
Uncharacterized conserved protein YchJ, contains N- and C-terminal SEC-C domains [Function unknown];
Pssm-ID: 442249 Cd Length: 144 Bit Score: 39.83 E-value: 1.37e-03
|
| PRK12318 |
PRK12318 |
methionyl aminopeptidase; |
882-900 |
2.23e-03 |
|
methionyl aminopeptidase;
Pssm-ID: 183434 [Multi-domain] Cd Length: 291 Bit Score: 40.96 E-value: 2.23e-03
|
| SF2_C |
cd18785 |
C-terminal helicase domain of superfamily 2 DEAD/H-box helicases; Superfamily (SF)2 helicases ... |
451-581 |
9.93e-03 |
|
C-terminal helicase domain of superfamily 2 DEAD/H-box helicases; Superfamily (SF)2 helicases include DEAD-box helicases, UvrB, RecG, Ski2, Sucrose Non-Fermenting (SNF) family helicases, and dicer proteins, among others. Similar to SF1 helicases, they do not form toroidal structures like SF3-6 helicases. SF2 helicases are a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. Their helicase core is surrounded by C- and N-terminal domains with specific functions such as nucleases, RNA or DNA binding domains, or domains engaged in protein-protein interactions. The core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.
Pssm-ID: 350172 [Multi-domain] Cd Length: 77 Bit Score: 35.76 E-value: 9.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 503342340 451 PVLVGTISIEKSEVVSNELTkagiahsvlnakfhakeadivaqagqpsaVTIATNMAGRGTDIvlggswqvevenlgeea 530
Cdd:cd18785 5 KIIVFTNSIEHAEEIASSLE-----------------------------ILVATNVLGEGIDV----------------- 38
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 503342340 531 tdekiaeikaawqirhdavlaSGGLHIIGTERHESRRIDNQLRGRAGRQGD 581
Cdd:cd18785 39 ---------------------PSLDTVIFFDPPSSAASYIQRVGRAGRGGK 68
|
|
| |
