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Conserved domains on  [gi|501590436|ref|WP_012594602|]
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YciI family protein [Rippkaea orientalis]

Protein Classification

YciI family protein( domain architecture ID 10006398)

YciI family protein similar to Haemophilus influenzae YciI (HI0828) and Burkholderia phenoliruptrix 5-chlorohydroxyhydroquinone dehydrochlorinase, which is involved in the biodegradation of 2,4,5-trichlorophenoxyacetate

CATH:  3.30.70.1060

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YciI COG2350
YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis ...
 2-87 3.27e-19

YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis [Secondary metabolites biosynthesis, transport and catabolism, General function prediction only];


:

Pssm-ID: 441917  Cd Length: 93  Bit Score: 74.47  E-value: 3.27e-19
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501590436  2 AWFVKIERGIVDKK-RFDRYVPAHKAYVKELIAQGHQAKTGYWGD-FGGGMLLFEAESEEVAKTIVANDPLILNGCV-EY 78
Cdd:COG2350   1 MLFAVILTDKPDSLeERDALRPAHLAYLKELYEEGRLLAAGPLLDdDTGGLIIAEADSREEAEALAAADPYVKAGVVaSV 80


                ....*....
gi 501590436 79 ELHQWCIVV 87
Cdd:COG2350  81 EVREWKPVL 89
 
Name Accession Description Interval E-value
YciI COG2350
YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis ...
 2-87 3.27e-19

YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis [Secondary metabolites biosynthesis, transport and catabolism, General function prediction only];


Pssm-ID: 441917  Cd Length: 93  Bit Score: 74.47  E-value: 3.27e-19
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501590436  2 AWFVKIERGIVDKK-RFDRYVPAHKAYVKELIAQGHQAKTGYWGD-FGGGMLLFEAESEEVAKTIVANDPLILNGCV-EY 78
Cdd:COG2350   1 MLFAVILTDKPDSLeERDALRPAHLAYLKELYEEGRLLAAGPLLDdDTGGLIIAEADSREEAEALAAADPYVKAGVVaSV 80


                ....*....
gi 501590436 79 ELHQWCIVV 87
Cdd:COG2350  81 EVREWKPVL 89
PRK12866 PRK12866
YciI-like protein; Reviewed
 48-87 6.12e-06

YciI-like protein; Reviewed


Pssm-ID: 237238  Cd Length: 97  Bit Score: 40.48  E-value: 6.12e-06
                        10        20        30        40
                ....*....|....*....|....*....|....*....|.
gi 501590436 48 GGMLLFEAESEEVAKTIVANDPLILNGCV-EYELHQWCIVV 87
Cdd:PRK12866 49 GAVLVFEGDSPAAAEAFARADPYVRNGLVkSWRVRPWTVVV 89
YCII pfam03795
YCII-related domain; The majority of proteins in this family consist of a single copy of this ...
 21-83 2.45e-05

YCII-related domain; The majority of proteins in this family consist of a single copy of this domain, though it is also found as a repeat. A strongly conserved histidine and a aspartate suggest that the domain has an enzymatic function. This family also now includes the family formerly known as the DGPF domain (COG3795). Although its function is unknown it is found fused to a sigma-70 factor family domain in Swiss:Q9A8M4. Suggesting that this domain plays a role in transcription initiation (Bateman A per. obs.). This domain is named after the most conserved motif in the alignment.


Pssm-ID: 397734  Cd Length: 94  Bit Score: 38.88  E-value: 2.45e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 501590436  21 VPAHKAYVKELIAQGH-------QAKTGYWGD---FGGGMLLFEAESEEVAKTIVANDPLILNGCVE-YELHQW 83
Cdd:pfam03795 20 RAAHLAYLEQLKKEGVllasgptLVIDGPFAEtkeQLGGFYIIEAADLDEAIAIAAGDPFVAAGLYEeRPVKEF 93
 
Name Accession Description Interval E-value
YciI COG2350
YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis ...
 2-87 3.27e-19

YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis [Secondary metabolites biosynthesis, transport and catabolism, General function prediction only];


Pssm-ID: 441917  Cd Length: 93  Bit Score: 74.47  E-value: 3.27e-19
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501590436  2 AWFVKIERGIVDKK-RFDRYVPAHKAYVKELIAQGHQAKTGYWGD-FGGGMLLFEAESEEVAKTIVANDPLILNGCV-EY 78
Cdd:COG2350   1 MLFAVILTDKPDSLeERDALRPAHLAYLKELYEEGRLLAAGPLLDdDTGGLIIAEADSREEAEALAAADPYVKAGVVaSV 80


                ....*....
gi 501590436 79 ELHQWCIVV 87
Cdd:COG2350  81 EVREWKPVL 89
PRK12866 PRK12866
YciI-like protein; Reviewed
 48-87 6.12e-06

YciI-like protein; Reviewed


Pssm-ID: 237238  Cd Length: 97  Bit Score: 40.48  E-value: 6.12e-06
                        10        20        30        40
                ....*....|....*....|....*....|....*....|.
gi 501590436 48 GGMLLFEAESEEVAKTIVANDPLILNGCV-EYELHQWCIVV 87
Cdd:PRK12866 49 GAVLVFEGDSPAAAEAFARADPYVRNGLVkSWRVRPWTVVV 89
YCII pfam03795
YCII-related domain; The majority of proteins in this family consist of a single copy of this ...
 21-83 2.45e-05

YCII-related domain; The majority of proteins in this family consist of a single copy of this domain, though it is also found as a repeat. A strongly conserved histidine and a aspartate suggest that the domain has an enzymatic function. This family also now includes the family formerly known as the DGPF domain (COG3795). Although its function is unknown it is found fused to a sigma-70 factor family domain in Swiss:Q9A8M4. Suggesting that this domain plays a role in transcription initiation (Bateman A per. obs.). This domain is named after the most conserved motif in the alignment.


Pssm-ID: 397734  Cd Length: 94  Bit Score: 38.88  E-value: 2.45e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 501590436  21 VPAHKAYVKELIAQGH-------QAKTGYWGD---FGGGMLLFEAESEEVAKTIVANDPLILNGCVE-YELHQW 83
Cdd:pfam03795 20 RAAHLAYLEQLKKEGVllasgptLVIDGPFAEtkeQLGGFYIIEAADLDEAIAIAAGDPFVAAGLYEeRPVKEF 93
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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