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Conserved domains on  [gi|501534409|ref|WP_012540458|]
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MULTISPECIES: oxaloacetate decarboxylase subunit gamma [Pseudomonadota]

Protein Classification

oxaloacetate decarboxylase subunit gamma( domain architecture ID 10011867)

oxaloacetate decarboxylase subunit gamma (OadG) is a component of the heterotrimeric complex that catalyzes the decarboxylation of oxaloacetate coupled to Na(+) translocation

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK02919 PRK02919
oxaloacetate decarboxylase subunit gamma; Provisional
 2-83 5.74e-26

oxaloacetate decarboxylase subunit gamma; Provisional


:

Pssm-ID: 235086  Cd Length: 82  Bit Score: 90.89  E-value: 5.74e-26
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501534409  2 TDNAVLLGEGFTLMFLGMGFVLVFLLLLIFAIRGMSLAVNRLFPEPPAAPKPAPAAVAPADDFARLKPAIVAAIHHHRRL 81
Cdd:PRK02919  1 MNNAELLGEGFTLMFLGMGFVLAFLFLLIFAIRGMSALINRFFPEPVAAPAPRPVPVAPVDDFTRLKPVIAAAIHHHRRL 80


                ..
gi 501534409 82 HP 83
Cdd:PRK02919 81 NA 82
 
Name Accession Description Interval E-value
PRK02919 PRK02919
oxaloacetate decarboxylase subunit gamma; Provisional
 2-83 5.74e-26

oxaloacetate decarboxylase subunit gamma; Provisional


Pssm-ID: 235086  Cd Length: 82  Bit Score: 90.89  E-value: 5.74e-26
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501534409  2 TDNAVLLGEGFTLMFLGMGFVLVFLLLLIFAIRGMSLAVNRLFPEPPAAPKPAPAAVAPADDFARLKPAIVAAIHHHRRL 81
Cdd:PRK02919  1 MNNAELLGEGFTLMFLGMGFVLAFLFLLIFAIRGMSALINRFFPEPVAAPAPRPVPVAPVDDFTRLKPVIAAAIHHHRRL 80


                ..
gi 501534409 82 HP 83
Cdd:PRK02919 81 NA 82
OadG COG3630
Na+-transporting oxaloacetate/methylmalonyl-CoA decarboxylase, gamma subunit [Energy ...
 1-80 3.64e-11

Na+-transporting oxaloacetate/methylmalonyl-CoA decarboxylase, gamma subunit [Energy production and conversion];


Pssm-ID: 442848  Cd Length: 80  Bit Score: 53.41  E-value: 3.64e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501534409  1 MTDNAvLLGEGFTLMFLGMGFVLVFLLLLIFAIRGMSLAVNRLF-PEPPAAPKPAPAAVAPADDFARLKPAIVAAIHHHR 79
Cdd:COG3630   1 MTNSE-LLLEGLNLMLLGMGFVFVFLTLLVFAIKLMSKLINRFFpEPEPAPVATPSASAAPTADDPELVAAITAAIHHHR 79


                .
gi 501534409 80 R 80
Cdd:COG3630  80 R 80
oadG_fam TIGR01195
sodium pump decarboxylases, gamma subunit; This model finds the subfamily of distantly related, ...
 7-83 6.47e-07

sodium pump decarboxylases, gamma subunit; This model finds the subfamily of distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit. Most sequences scoring between the noise and trusted cutoffs are eukaryotic sodium channel proteins.


Pssm-ID: 273493  Cd Length: 82  Bit Score: 42.81  E-value: 6.47e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501534409   7 LLGEGFTLMFLGMGFVLVFLLLLIFAIRGMSLAVNRLFP--EPPAAPKPAPAAVAPADDFA-RLKPAIVAAIHHHRRLHP 83
Cdd:TIGR01195  3 LLLEGATLTVLGMGIVFLFLSLLIYAVRGMGKVVGRKKVpePPASAKKSKKAAVPAVQDEDeELVAAIAAAVHEHLRKTA 82
OAD_gamma pfam04277
Oxaloacetate decarboxylase, gamma chain;
9-79 5.33e-03

Oxaloacetate decarboxylase, gamma chain;


Pssm-ID: 461248  Cd Length: 76  Bit Score: 32.56  E-value: 5.33e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 501534409   9 GEGFTLMFLGMGFVLVFLLLLIFAIRGMSLAVNRLFPEPPAA-----PKPAPAAVAPADDFARLKPAIVAAIHHHR 79
Cdd:pfam04277  1 GEGLLLTLLGMGVVFVFLILLSLVISLMSKIINKFAKKKKAKaaaaaAAAAAAAAADLTDDPELVAVIAAAIAAYR 76
 
Name Accession Description Interval E-value
PRK02919 PRK02919
oxaloacetate decarboxylase subunit gamma; Provisional
 2-83 5.74e-26

oxaloacetate decarboxylase subunit gamma; Provisional


Pssm-ID: 235086  Cd Length: 82  Bit Score: 90.89  E-value: 5.74e-26
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501534409  2 TDNAVLLGEGFTLMFLGMGFVLVFLLLLIFAIRGMSLAVNRLFPEPPAAPKPAPAAVAPADDFARLKPAIVAAIHHHRRL 81
Cdd:PRK02919  1 MNNAELLGEGFTLMFLGMGFVLAFLFLLIFAIRGMSALINRFFPEPVAAPAPRPVPVAPVDDFTRLKPVIAAAIHHHRRL 80


                ..
gi 501534409 82 HP 83
Cdd:PRK02919 81 NA 82
OadG COG3630
Na+-transporting oxaloacetate/methylmalonyl-CoA decarboxylase, gamma subunit [Energy ...
 1-80 3.64e-11

Na+-transporting oxaloacetate/methylmalonyl-CoA decarboxylase, gamma subunit [Energy production and conversion];


Pssm-ID: 442848  Cd Length: 80  Bit Score: 53.41  E-value: 3.64e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501534409  1 MTDNAvLLGEGFTLMFLGMGFVLVFLLLLIFAIRGMSLAVNRLF-PEPPAAPKPAPAAVAPADDFARLKPAIVAAIHHHR 79
Cdd:COG3630   1 MTNSE-LLLEGLNLMLLGMGFVFVFLTLLVFAIKLMSKLINRFFpEPEPAPVATPSASAAPTADDPELVAAITAAIHHHR 79


                .
gi 501534409 80 R 80
Cdd:COG3630  80 R 80
oadG_fam TIGR01195
sodium pump decarboxylases, gamma subunit; This model finds the subfamily of distantly related, ...
 7-83 6.47e-07

sodium pump decarboxylases, gamma subunit; This model finds the subfamily of distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit. Most sequences scoring between the noise and trusted cutoffs are eukaryotic sodium channel proteins.


Pssm-ID: 273493  Cd Length: 82  Bit Score: 42.81  E-value: 6.47e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501534409   7 LLGEGFTLMFLGMGFVLVFLLLLIFAIRGMSLAVNRLFP--EPPAAPKPAPAAVAPADDFA-RLKPAIVAAIHHHRRLHP 83
Cdd:TIGR01195  3 LLLEGATLTVLGMGIVFLFLSLLIYAVRGMGKVVGRKKVpePPASAKKSKKAAVPAVQDEDeELVAAIAAAVHEHLRKTA 82
OAD_gamma pfam04277
Oxaloacetate decarboxylase, gamma chain;
9-79 5.33e-03

Oxaloacetate decarboxylase, gamma chain;


Pssm-ID: 461248  Cd Length: 76  Bit Score: 32.56  E-value: 5.33e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 501534409   9 GEGFTLMFLGMGFVLVFLLLLIFAIRGMSLAVNRLFPEPPAA-----PKPAPAAVAPADDFARLKPAIVAAIHHHR 79
Cdd:pfam04277  1 GEGLLLTLLGMGVVFVFLILLSLVISLMSKIINKFAKKKKAKaaaaaAAAAAAAAADLTDDPELVAVIAAAIAAYR 76
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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