|
Name |
Accession |
Description |
Interval |
E-value |
| TIGR01177 |
TIGR01177 |
putative methyltransferase, TIGR01177 family; This family of probable methyltransferases is ... |
6-332 |
1.96e-77 |
|
putative methyltransferase, TIGR01177 family; This family of probable methyltransferases is found exclusively in the Archaea. [Hypothetical proteins, Conserved]
Pssm-ID: 273486 [Multi-domain] Cd Length: 329 Bit Score: 240.42 E-value: 1.96e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500164904 6 YYFILSGDHEELSLAELKALLEI--INPSAEIMECYPMIclvknvDEVIAEKIIRRAGYIKEAGKLLGIDNPYNpelnYL 83
Cdd:TIGR01177 1 FYVELSGEHPELPLAELKALAEVygRVGDVEGVDRGLAI------ISAPIIDILERLAFTHEVGRSYDTCAAKD----LY 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500164904 84 DRVSELDAK-------YVKV------SIIKSTIEKEIADkyriLLISKTNLNNYHTRSKYVHLVFSSGRAFIGYPLFFLE 150
Cdd:TIGR01177 71 DFVAGLEASdldrksfAVRVrdlrgySVDKARLERKIGA----ILKKKGFKVSLRRPDIVVRVVITEDIFYLGRVLEERD 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500164904 151 TRNFYRRRPSTRPFFRSIALPIRLSRLLINLARVKEGEVLLDPFAGTGSILIEALMMKIRPIGIEIDWELVRGARENLLH 230
Cdd:TIGR01177 147 KEQFIERKPDRRPFFKPGSMDPKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEH 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500164904 231 YGFNNWVLILGDSTTIKLSG--IDGIATDPPYGRAASTHGLGAEYIYLKFIENSAESLKNKRYLVFMAPynlsKYID-EI 307
Cdd:TIGR01177 227 YGIEDFFVKRGDATKLPLSSesVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVP----TRIDlES 302
|
330 340
....*....|....*....|....*
gi 500164904 308 LCSNGFIIRGKHYMFVHGGLTRVIY 332
Cdd:TIGR01177 303 LAEDAFRVVKRFEVRVHRSLTRHIY 327
|
|
| Trm11 |
COG1041 |
tRNA G10 N-methylase Trm11 [Translation, ribosomal structure and biogenesis]; tRNA G10 ... |
164-332 |
4.17e-66 |
|
tRNA G10 N-methylase Trm11 [Translation, ribosomal structure and biogenesis]; tRNA G10 N-methylase Trm11 is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 440663 [Multi-domain] Cd Length: 172 Bit Score: 205.95 E-value: 4.17e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500164904 164 FFRSIALPIRLSRLLINLARVKEGEVLLDPFAGTGSILIEALMMKIRPIGIEIDWELVRGARENLLHYGFNNWVLILGDS 243
Cdd:COG1041 4 FFYPGSLDPRLARALVNLAGAKEGDTVLDPFCGTGTILIEAGLLGRRVIGSDIDPKMVEGARENLEHYGYEDADVIRGDA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500164904 244 TTIKLSG--IDGIATDPPYGRAASTHGLGAEYIYLKFIENSAESLKNKRYLVFMAPynlsKYIDEILCSNGFIIRGKHYM 321
Cdd:COG1041 84 RDLPLADesVDAIVTDPPYGRSSKISGEELLELYEKALEEAARVLKPGGRVVIVTP----RDIDELLEEAGFKVLERHEQ 159
|
170
....*....|.
gi 500164904 322 FVHGGLTRVIY 332
Cdd:COG1041 160 RVHKSLTRYIL 170
|
|
| UPF0020 |
pfam01170 |
Putative RNA methylase family UPF0020; This domain is probably a methylase. It is associated ... |
162-331 |
1.06e-28 |
|
Putative RNA methylase family UPF0020; This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains.
Pssm-ID: 395932 [Multi-domain] Cd Length: 184 Bit Score: 109.37 E-value: 1.06e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500164904 162 RPFFRSIALPIRLSRLLINLARVKEGEVLLDPFAGTGSILIEALMMKIRPI-------------GIEIDWELVRGARENL 228
Cdd:pfam01170 4 RPFNGPAPLKETLAAAMVNLAGWKPGDPLLDPMCGSGTILIEAALMGANIApgkfdarvraplyGSDIDRRMVQGARLNA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500164904 229 LHYGFNN-WVLILGDSTTIKL--SGIDGIATDPPYGRAASTHGLGaEYIYLKFIENSAESLKNKRYLVFMAPYN--LSKY 303
Cdd:pfam01170 84 ENAGVGDlIEFVQADAADLPLleGSVDVIVTNPPYGIRLGSKGAL-EALYPEFLREAKRVLRGGGWLVLLTAENkdFEKA 162
|
170 180
....*....|....*....|....*...
gi 500164904 304 IDEilcsngFIIRGKHYMFVHGGLTRVI 331
Cdd:pfam01170 163 ARE------RAWRKKKEFNVHIGGTRVI 184
|
|
| AdoMet_MTases |
cd02440 |
S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; ... |
190-295 |
8.09e-06 |
|
S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Pssm-ID: 100107 [Multi-domain] Cd Length: 107 Bit Score: 43.96 E-value: 8.09e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500164904 190 LLDPFAGTGSILIE-ALMMKIRPIGIEIDWELVRGARENLLHYGFNNWVLILGDSTTIKLSGI---DGIATDPPYgraas 265
Cdd:cd02440 2 VLDLGCGTGALALAlASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADesfDVIISDPPL----- 76
|
90 100 110
....*....|....*....|....*....|
gi 500164904 266 THGLGAeyiYLKFIENSAESLKNKRYLVFM 295
Cdd:cd02440 77 HHLVED---LARFLEEARRLLKPGGVLVLT 103
|
|
| PRK14968 |
PRK14968 |
putative methyltransferase; Provisional |
175-260 |
8.29e-05 |
|
putative methyltransferase; Provisional
Pssm-ID: 237872 [Multi-domain] Cd Length: 188 Bit Score: 42.96 E-value: 8.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500164904 175 SRLLINLARVKEGEVLLDPFAGTGSILIEALMMKIRPIGIEIDWELVRGARENLLHYGFNNWVL--ILGDSttikLSGID 252
Cdd:PRK14968 12 SFLLAENAVDKKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVevIRSDL----FEPFR 87
|
90
....*....|...
gi 500164904 253 GIATD-----PPY 260
Cdd:PRK14968 88 GDKFDvilfnPPY 100
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| TIGR01177 |
TIGR01177 |
putative methyltransferase, TIGR01177 family; This family of probable methyltransferases is ... |
6-332 |
1.96e-77 |
|
putative methyltransferase, TIGR01177 family; This family of probable methyltransferases is found exclusively in the Archaea. [Hypothetical proteins, Conserved]
Pssm-ID: 273486 [Multi-domain] Cd Length: 329 Bit Score: 240.42 E-value: 1.96e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500164904 6 YYFILSGDHEELSLAELKALLEI--INPSAEIMECYPMIclvknvDEVIAEKIIRRAGYIKEAGKLLGIDNPYNpelnYL 83
Cdd:TIGR01177 1 FYVELSGEHPELPLAELKALAEVygRVGDVEGVDRGLAI------ISAPIIDILERLAFTHEVGRSYDTCAAKD----LY 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500164904 84 DRVSELDAK-------YVKV------SIIKSTIEKEIADkyriLLISKTNLNNYHTRSKYVHLVFSSGRAFIGYPLFFLE 150
Cdd:TIGR01177 71 DFVAGLEASdldrksfAVRVrdlrgySVDKARLERKIGA----ILKKKGFKVSLRRPDIVVRVVITEDIFYLGRVLEERD 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500164904 151 TRNFYRRRPSTRPFFRSIALPIRLSRLLINLARVKEGEVLLDPFAGTGSILIEALMMKIRPIGIEIDWELVRGARENLLH 230
Cdd:TIGR01177 147 KEQFIERKPDRRPFFKPGSMDPKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEH 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500164904 231 YGFNNWVLILGDSTTIKLSG--IDGIATDPPYGRAASTHGLGAEYIYLKFIENSAESLKNKRYLVFMAPynlsKYID-EI 307
Cdd:TIGR01177 227 YGIEDFFVKRGDATKLPLSSesVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVP----TRIDlES 302
|
330 340
....*....|....*....|....*
gi 500164904 308 LCSNGFIIRGKHYMFVHGGLTRVIY 332
Cdd:TIGR01177 303 LAEDAFRVVKRFEVRVHRSLTRHIY 327
|
|
| Trm11 |
COG1041 |
tRNA G10 N-methylase Trm11 [Translation, ribosomal structure and biogenesis]; tRNA G10 ... |
164-332 |
4.17e-66 |
|
tRNA G10 N-methylase Trm11 [Translation, ribosomal structure and biogenesis]; tRNA G10 N-methylase Trm11 is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 440663 [Multi-domain] Cd Length: 172 Bit Score: 205.95 E-value: 4.17e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500164904 164 FFRSIALPIRLSRLLINLARVKEGEVLLDPFAGTGSILIEALMMKIRPIGIEIDWELVRGARENLLHYGFNNWVLILGDS 243
Cdd:COG1041 4 FFYPGSLDPRLARALVNLAGAKEGDTVLDPFCGTGTILIEAGLLGRRVIGSDIDPKMVEGARENLEHYGYEDADVIRGDA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500164904 244 TTIKLSG--IDGIATDPPYGRAASTHGLGAEYIYLKFIENSAESLKNKRYLVFMAPynlsKYIDEILCSNGFIIRGKHYM 321
Cdd:COG1041 84 RDLPLADesVDAIVTDPPYGRSSKISGEELLELYEKALEEAARVLKPGGRVVIVTP----RDIDELLEEAGFKVLERHEQ 159
|
170
....*....|.
gi 500164904 322 FVHGGLTRVIY 332
Cdd:COG1041 160 RVHKSLTRYIL 170
|
|
| UPF0020 |
pfam01170 |
Putative RNA methylase family UPF0020; This domain is probably a methylase. It is associated ... |
162-331 |
1.06e-28 |
|
Putative RNA methylase family UPF0020; This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains.
Pssm-ID: 395932 [Multi-domain] Cd Length: 184 Bit Score: 109.37 E-value: 1.06e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500164904 162 RPFFRSIALPIRLSRLLINLARVKEGEVLLDPFAGTGSILIEALMMKIRPI-------------GIEIDWELVRGARENL 228
Cdd:pfam01170 4 RPFNGPAPLKETLAAAMVNLAGWKPGDPLLDPMCGSGTILIEAALMGANIApgkfdarvraplyGSDIDRRMVQGARLNA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500164904 229 LHYGFNN-WVLILGDSTTIKL--SGIDGIATDPPYGRAASTHGLGaEYIYLKFIENSAESLKNKRYLVFMAPYN--LSKY 303
Cdd:pfam01170 84 ENAGVGDlIEFVQADAADLPLleGSVDVIVTNPPYGIRLGSKGAL-EALYPEFLREAKRVLRGGGWLVLLTAENkdFEKA 162
|
170 180
....*....|....*....|....*...
gi 500164904 304 IDEilcsngFIIRGKHYMFVHGGLTRVI 331
Cdd:pfam01170 163 ARE------RAWRKKKEFNVHIGGTRVI 184
|
|
| YtxK |
COG0827 |
Adenine-specific DNA N6-methylase [Replication, recombination and repair]; |
178-300 |
6.76e-09 |
|
Adenine-specific DNA N6-methylase [Replication, recombination and repair];
Pssm-ID: 440589 [Multi-domain] Cd Length: 327 Bit Score: 56.50 E-value: 6.76e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500164904 178 LINLARVKEGEVLLDPFAGTGSIL---IEALMMKIRPIGIEIDWELVRGARE--NLLHYGFNnwvLILGDSTTIKLSG-I 251
Cdd:COG0827 107 LVEKFTKKEGLRILDPAVGTGNLLttvLNQLKKKVNAYGVEVDDLLIRLAAVlaNLQGHPVE---LFHQDALQPLLIDpV 183
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 500164904 252 DGIATDPPYGR-----AASTHGLGAE----YIYLKFIENSAESLKNKRYLVFMAPYNL 300
Cdd:COG0827 184 DVVISDLPVGYypndeRAKRFKLKADeghsYAHHLFIEQSLNYLKPGGYLFFLVPSNL 241
|
|
| HsdM |
COG0286 |
Type I restriction-modification system, DNA methylase subunit [Defense mechanisms]; |
174-288 |
1.04e-08 |
|
Type I restriction-modification system, DNA methylase subunit [Defense mechanisms];
Pssm-ID: 440055 [Multi-domain] Cd Length: 243 Bit Score: 55.19 E-value: 1.04e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500164904 174 LSRLLINLARVKEGEVLLDPFAGTGSILIEA----------LMMKIRPIGIEIDWELVRGARENLLHYGFNNWVLILGDS 243
Cdd:COG0286 31 VVRLMVELLDPKPGETVYDPACGSGGFLVEAaeylkehggdERKKLSLYGQEINPTTYRLAKMNLLLHGIGDPNIELGDT 110
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 500164904 244 ---TTIKLSGIDGIATDPPYGRAASTHGLGAEY-------------IYLKFIENSAESLKN 288
Cdd:COG0286 111 lsnDGDELEKFDVVLANPPFGGKWKKEELKDDLlgrfgyglppksnADLLFLQHILSLLKP 171
|
|
| N6_N4_Mtase |
pfam01555 |
DNA methylase; Members of this family are DNA methylases. The family contains both N-4 ... |
171-226 |
1.22e-07 |
|
DNA methylase; Members of this family are DNA methylases. The family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases.
Pssm-ID: 396230 [Multi-domain] Cd Length: 221 Bit Score: 51.63 E-value: 1.22e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 500164904 171 PIRLSRLLINLArVKEGEVLLDPFAGTGSILIEALMMKIRPIGIEIDWELVRGARE 226
Cdd:pfam01555 167 PEALLERLILAS-TNPGDIVLDPFAGSGTTGAAAKELGRNFIGIEIEEEYVEIAKE 221
|
|
| YhdJ |
COG0863 |
DNA modification methylase [Replication, recombination and repair]; |
171-228 |
3.89e-07 |
|
DNA modification methylase [Replication, recombination and repair];
Pssm-ID: 440623 Cd Length: 236 Bit Score: 50.31 E-value: 3.89e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 500164904 171 PIRLSRLLINLArVKEGEVLLDPFAGTGSILIEALMMKIRPIGIEIDWELVRGARENL 228
Cdd:COG0863 168 PVELLERLILAS-SNPGDIVLDPFAGSGTTLVAAERLGRRFIGIEIDPEYVEVARRRL 224
|
|
| TrmA |
COG2265 |
tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family [Translation, ribosomal structure ... |
132-272 |
1.52e-06 |
|
tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family [Translation, ribosomal structure and biogenesis]; tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 441866 [Multi-domain] Cd Length: 377 Bit Score: 49.40 E-value: 1.52e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500164904 132 HLVFSSGRAFIGYPLFfleTRNFyrrRPSTRPFF---RSIALpiRLSRLLINLARVKEGEVLLDPFAGTGSIlieALMM- 207
Cdd:COG2265 184 HLVVRAGRDYLTERLG---GLTF---RISPGSFFqvnPEQAE--ALYAAALEWLDLTGGERVLDLYCGVGTF---ALPLa 252
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 500164904 208 ----KIrpIGIEIDWELVRGARENLLHYGFNNWVLILGDSTTI-----KLSGIDGIATDPPygRAasthGLGAE 272
Cdd:COG2265 253 rrakKV--IGVEIVPEAVEDARENARLNGLKNVEFVAGDLEEVlpellWGGRPDVVVLDPP--RA----GAGPE 318
|
|
| RlmL |
COG0116 |
23S rRNA G2445 N2-methylase RlmL [Translation, ribosomal structure and biogenesis]; 23S rRNA ... |
178-261 |
2.57e-06 |
|
23S rRNA G2445 N2-methylase RlmL [Translation, ribosomal structure and biogenesis]; 23S rRNA G2445 N2-methylase RlmL is part of the Pathway/BioSystem: 23S rRNA modification
Pssm-ID: 439886 [Multi-domain] Cd Length: 369 Bit Score: 48.56 E-value: 2.57e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500164904 178 LINLARVKEGEVLLDPFAGTGSILIEALMM----------------------------------KIRP------IGIEID 217
Cdd:COG0116 180 LLLLSGWDGDRPLVDPMCGSGTILIEAALIaaniapglnrdfafekwpdfdaelwqelreeaeaRIKRdpplpiFGSDID 259
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 500164904 218 WELVRGARENLLHYGFNNWV-LILGDSTTIKLSGIDG-IATDPPYG 261
Cdd:COG0116 260 PRAIEAARENAERAGVADLIeFEQADFRDLEPPAEPGlIITNPPYG 305
|
|
| CbiT |
TIGR02469 |
precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; This model recognizes ... |
177-242 |
4.59e-06 |
|
precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]
Pssm-ID: 274148 [Multi-domain] Cd Length: 124 Bit Score: 45.40 E-value: 4.59e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 500164904 177 LLINLARVKEGEVLLDPFAGTGSILIEA--LMMKIRPIGIEIDWELVRGARENLLHYGFNNWVLILGD 242
Cdd:TIGR02469 10 LTLAKLRLRPGDVLWDIGAGTGSVTIEAarLVPNGRVYAIERNPEALDLIERNLRRFGVSNIVIVEGD 77
|
|
| AdoMet_MTases |
cd02440 |
S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; ... |
190-295 |
8.09e-06 |
|
S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Pssm-ID: 100107 [Multi-domain] Cd Length: 107 Bit Score: 43.96 E-value: 8.09e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500164904 190 LLDPFAGTGSILIE-ALMMKIRPIGIEIDWELVRGARENLLHYGFNNWVLILGDSTTIKLSGI---DGIATDPPYgraas 265
Cdd:cd02440 2 VLDLGCGTGALALAlASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADesfDVIISDPPL----- 76
|
90 100 110
....*....|....*....|....*....|
gi 500164904 266 THGLGAeyiYLKFIENSAESLKNKRYLVFM 295
Cdd:cd02440 77 HHLVED---LARFLEEARRLLKPGGVLVLT 103
|
|
| N6_Mtase |
pfam02384 |
N-6 DNA Methylase; Restriction-modification (R-M) systems protect a bacterial cell against ... |
171-261 |
1.04e-05 |
|
N-6 DNA Methylase; Restriction-modification (R-M) systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The R-M system is a complex containing three polypeptides: M (this family), S (pfam01420), and R. This family consists of N-6 adenine-specific DNA methylase EC:2.1.1.72 from Type I and Type IC restriction systems. These methylases have the same sequence specificity as their corresponding restriction enzymes.
Pssm-ID: 426749 [Multi-domain] Cd Length: 310 Bit Score: 46.54 E-value: 1.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500164904 171 PIRLSRLLINLARVKEGEVLLDPFAGTGSILIEALMM------KIRPIGI---EIDWELVRGARENLLHYG--FNNWVLI 239
Cdd:pfam02384 30 PREVSKLIVELLDPKPGESIYDPACGSGGFLIQAEKFvkehdgDTNDLSIygqEKNPTTYRLARMNMILHGieYDDFHIR 109
|
90 100
....*....|....*....|....*.
gi 500164904 240 LGDSTT----IKLSGIDGIATDPPYG 261
Cdd:pfam02384 110 HGDTLTspkfEDDKKFDVVVANPPFS 135
|
|
| PRK14968 |
PRK14968 |
putative methyltransferase; Provisional |
175-260 |
8.29e-05 |
|
putative methyltransferase; Provisional
Pssm-ID: 237872 [Multi-domain] Cd Length: 188 Bit Score: 42.96 E-value: 8.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500164904 175 SRLLINLARVKEGEVLLDPFAGTGSILIEALMMKIRPIGIEIDWELVRGARENLLHYGFNNWVL--ILGDSttikLSGID 252
Cdd:PRK14968 12 SFLLAENAVDKKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVevIRSDL----FEPFR 87
|
90
....*....|...
gi 500164904 253 GIATD-----PPY 260
Cdd:PRK14968 88 GDKFDvilfnPPY 100
|
|
| TrmN6 |
COG4123 |
tRNA1(Val) A37 N6-methylase TrmN6 [Translation, ribosomal structure and biogenesis]; tRNA1(Val) ... |
177-325 |
1.20e-04 |
|
tRNA1(Val) A37 N6-methylase TrmN6 [Translation, ribosomal structure and biogenesis]; tRNA1(Val) A37 N6-methylase TrmN6 is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 443299 [Multi-domain] Cd Length: 238 Bit Score: 42.82 E-value: 1.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500164904 177 LLINLARVKEGEVLLDPFAGTGSIlieALMM-----KIRPIGIEIDWELVRGARENLLHYGFNNWV-LILGD----STTI 246
Cdd:COG4123 28 LLAAFAPVKKGGRVLDLGTGTGVI---ALMLaqrspGARITGVEIQPEAAELARRNVALNGLEDRItVIHGDlkefAAEL 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500164904 247 KLSGIDGIATDPPY------------GRAAS--THGLGAEyiylKFIENSAESLKNKRYLVFMAPYNLSKYIDEILCSNG 312
Cdd:COG4123 105 PPGSFDLVVSNPPYfkagsgrkspdeARAIArhEDALTLE----DLIRAAARLLKPGGRFALIHPAERLAEILAALRKYG 180
|
170
....*....|...
gi 500164904 313 FIIrgKHYMFVHG 325
Cdd:COG4123 181 LGP--KRLRPVHP 191
|
|
| rlmL |
PRK11783 |
bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2)) ... |
185-236 |
1.66e-04 |
|
bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL;
Pssm-ID: 236981 [Multi-domain] Cd Length: 702 Bit Score: 43.25 E-value: 1.66e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 500164904 185 KEGEVLLDPFAGTGSILIEALMM--KIRPiGIEidwelvrgaREnllHYGFNNW 236
Cdd:PRK11783 189 QEGTPLLDPMCGSGTLLIEAAMMaaDIAP-GLH---------RE---RWGFSGW 229
|
|
| Cons_hypoth95 |
pfam03602 |
Conserved hypothetical protein 95; |
186-260 |
1.97e-04 |
|
Conserved hypothetical protein 95;
Pssm-ID: 427391 [Multi-domain] Cd Length: 179 Bit Score: 41.46 E-value: 1.97e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500164904 186 EGEVLLDPFAGTGSILIEALM--MKiRPIGIEIDWELVRGARENLLHYGFNNWVLILGD-----STTIKLSGIDGIATDP 258
Cdd:pfam03602 41 EGARVLDLFAGSGALGLEALSrgAK-RVTLVEKDKRAVQILKENLQLLGLPGAVLVMDAllallRLAGKGPVFDIVFLDP 119
|
..
gi 500164904 259 PY 260
Cdd:pfam03602 120 PY 121
|
|
| CobL |
COG2242 |
Precorrin-6B methylase 2 [Coenzyme transport and metabolism]; Precorrin-6B methylase 2 is part ... |
171-242 |
4.63e-04 |
|
Precorrin-6B methylase 2 [Coenzyme transport and metabolism]; Precorrin-6B methylase 2 is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis
Pssm-ID: 441843 [Multi-domain] Cd Length: 403 Bit Score: 41.69 E-value: 4.63e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 500164904 171 PIR---LSRLlinlaRVKEGEVLLDPFAGTGSILIEAlmMKIRP----IGIEIDWELVRGARENLLHYGFNNWVLILGD 242
Cdd:COG2242 234 EVRaltLAKL-----ALRPGDVLWDIGAGSGSVSIEA--ARLAPggrvYAIERDPERAALIRANARRFGVPNVEVVEGE 305
|
|
| Methyltransf_31 |
pfam13847 |
Methyltransferase domain; This family appears to have methyltransferase activity. |
185-242 |
9.03e-04 |
|
Methyltransferase domain; This family appears to have methyltransferase activity.
Pssm-ID: 463998 [Multi-domain] Cd Length: 150 Bit Score: 39.32 E-value: 9.03e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 500164904 185 KEGEVLLDPFAGTGSILIEA---LMMKIRPIGIEIDWELVRGARENLLHYGFNNWVLILGD 242
Cdd:pfam13847 2 DKGMRVLDLGCGTGHLSFELaeeLGPNAEVVGIDISEEAIEKARENAQKLGFDNVEFEQGD 62
|
|
| UbiE |
COG2226 |
Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG [Coenzyme transport and metabolism]; ... |
165-242 |
1.30e-03 |
|
Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG [Coenzyme transport and metabolism]; Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG is part of the Pathway/BioSystem: Biotin biosynthesis
Pssm-ID: 441828 [Multi-domain] Cd Length: 143 Bit Score: 38.44 E-value: 1.30e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 500164904 165 FRSIALPIRLSRLLINLARVKEGEVLLDPFAGTGSILIEALMMKIRPIGIEIDWELVRGARENLLHYGFnNWVLILGD 242
Cdd:COG2226 1 FDRVAARYDGREALLAALGLRPGARVLDLGCGTGRLALALAERGARVTGVDISPEMLELARERAAEAGL-NVEFVVGD 77
|
|
| Pcm |
COG2518 |
Protein-L-isoaspartate O-methyltransferase [Posttranslational modification, protein turnover, ... |
177-260 |
1.47e-03 |
|
Protein-L-isoaspartate O-methyltransferase [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 442008 [Multi-domain] Cd Length: 197 Bit Score: 39.30 E-value: 1.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500164904 177 LLINLARVKEGEVLLDpfAGTGSILIEALMMKI--RPIGIEIDWELVRGARENLLHYGFNNWVLILGDsttiklsGIDGI 254
Cdd:COG2518 57 RMLEALDLKPGDRVLE--IGTGSGYQAAVLARLagRVYSVERDPELAERARERLAALGYDNVTVRVGD-------GALGW 127
|
....*.
gi 500164904 255 ATDPPY 260
Cdd:COG2518 128 PEHAPF 133
|
|
| PRK07402 |
PRK07402 |
precorrin-6Y C5,15-methyltransferase subunit CbiT; |
172-241 |
2.97e-03 |
|
precorrin-6Y C5,15-methyltransferase subunit CbiT;
Pssm-ID: 180961 Cd Length: 196 Bit Score: 38.44 E-value: 2.97e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 500164904 172 IRLsrLLINLARVKEGEVLLDPFAGTGSILIEA--LMMKIRPIGIEIDWELVRGARENLLHYGFNNWVLILG 241
Cdd:PRK07402 28 VRL--LLISQLRLEPDSVLWDIGAGTGTIPVEAglLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEG 97
|
|
| cbiT |
PRK00377 |
cobalt-precorrin-6Y C(15)-methyltransferase; Provisional |
159-246 |
9.99e-03 |
|
cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Pssm-ID: 234740 Cd Length: 198 Bit Score: 36.70 E-value: 9.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500164904 159 PSTRPFFRSIALpirlSRLlinlaRVKEGEVLLDPFAGTGSILIEA-LMM--KIRPIGIEIDWELVRGARENLLHYGF-N 234
Cdd:PRK00377 22 PMTKEEIRALAL----SKL-----RLRKGDMILDIGCGTGSVTVEAsLLVgeTGKVYAVDKDEKAINLTRRNAEKFGVlN 92
|
90
....*....|..
gi 500164904 235 NWVLILGDSTTI 246
Cdd:PRK00377 93 NIVLIKGEAPEI 104
|
|
| |
