|
Name |
Accession |
Description |
Interval |
E-value |
| DnaA |
TIGR00362 |
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; ... |
6-493 |
0e+00 |
|
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273037 [Multi-domain] Cd Length: 437 Bit Score: 691.58 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499824578 6 WQQCLNFLQDELSSQQFNTWIRPLQAEDGDANELCLLAPNRFVRDWVNDKYLKRINELLRDLaSGKPPKVQLTVGSrrnv 85
Cdd:TIGR00362 1 WNRILERLEKELSEQEYNTWFKPLKLLSIEGNTLIISVPNEFVKEWIEKNYLDLIEELLQEL-FGAEIEIEFTVGE---- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499824578 86 amssprdlgaPVSATTMNASRPTEAPAVHAAPRAKgdyadeqeidrlrereetprrgggerqvqvegslkhQSGLNPNFT 165
Cdd:TIGR00362 76 ----------DEEELEPNSKKPEPAPPEAPAPPSS------------------------------------ASGLNPKYT 109
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499824578 166 FETFVEGKSNQLARAASRQVAENPGGAYNPLFLYGGVGLGKTHLMHAVGNHLAGQRENAKVVYLHSERFVADMVKALQLN 245
Cdd:TIGR00362 110 FDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVLYVSSEKFTNDFVNALRNN 189
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499824578 246 AINDFKRFYRSVDALLIDDIQFFAGKERSQEEFFHTFNALLEGGQQMILTSDRYPKEISGVEERLKSRFGWGLTVAIEPP 325
Cdd:TIGR00362 190 KMEEFKEKYRSVDLLLIDDIQFLAGKERTQEEFFHTFNALHENNKQIVLTSDRPPKELPGLEDRLRSRFEWGLVVDIEPP 269
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499824578 326 ELETRVAILMKKADQAKVDLPHDAAFFIAQKIRSNVRELEGALKKVIADSHFMGKPITQDFIRESLKDLLALQDKQVGVD 405
Cdd:TIGR00362 270 DLETRLAILQKKAEEEGLELPDEVLEFIAKNITSNVRELEGALNRLLAYASLTGKPITLELAKEALKDLLRAQKKEITIE 349
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499824578 406 NIQRTVAEYYKIKLADLLSKRRSRSVARPRQVAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKVQTLKEESADIRED 485
Cdd:TIGR00362 350 NIQKVVAKYYNIKVSDLKSKKRTRNIVRPRQIAMYLAKELTDLSLPEIGKAFGGRDHTTVLHAVRKIEKLIETDAELKED 429
|
....*...
gi 499824578 486 YKNLLRLL 493
Cdd:TIGR00362 430 IEELKRKL 437
|
|
| dnaA |
PRK00149 |
chromosomal replication initiator protein DnaA; |
1-495 |
0e+00 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 234667 [Multi-domain] Cd Length: 401 Bit Score: 690.34 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499824578 1 MSVALWQQCLNFLQDELSSQQFNTWIRPLQAEDGDANELCLLAPNRFVRDWVNDKYLKRINELLRdlasgkppkvqltvg 80
Cdd:PRK00149 1 NLQSLWEKVLERLKDELSEQEYETWIKPLKALSLEDNTLTLYVPNRFVKDWIEKNYLDLIEEALQ--------------- 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499824578 81 srrnvamssprdlgapvsattmnasrpteapavhaaprakgdyadeqeidrlrereetprrgggerqvqvegslkhqsgL 160
Cdd:PRK00149 66 -------------------------------------------------------------------------------L 66
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499824578 161 NPNFTFETFVEGKSNQLARAASRQVAENPGGAYNPLFLYGGVGLGKTHLMHAVGNHLAGQRENAKVVYLHSERFVADMVK 240
Cdd:PRK00149 67 NPKYTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVN 146
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499824578 241 ALQLNAINDFKRFYRSVDALLIDDIQFFAGKERSQEEFFHTFNALLEGGQQMILTSDRYPKEISGVEERLKSRFGWGLTV 320
Cdd:PRK00149 147 ALRNNTMEEFKEKYRSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTV 226
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499824578 321 AIEPPELETRVAILMKKADQAKVDLPHDAAFFIAQKIRSNVRELEGALKKVIADSHFMGKPITQDFIRESLKDLLALQDK 400
Cdd:PRK00149 227 DIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDLLAAQKK 306
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499824578 401 QVGVDNIQRTVAEYYKIKLADLLSKRRSRSVARPRQVAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKVQTLKEESA 480
Cdd:PRK00149 307 KITIENIQKVVAEYYNIKVSDLKSKSRTRNIARPRQIAMYLAKELTDLSLPEIGRAFGGRDHTTVLHAVRKIEKLLEEDP 386
|
490
....*....|....*
gi 499824578 481 DIREDYKNLLRLLTS 495
Cdd:PRK00149 387 ELKEDVEELKRKLKS 401
|
|
| DnaA |
COG0593 |
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair]; |
160-462 |
0e+00 |
|
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair];
Pssm-ID: 440358 [Multi-domain] Cd Length: 303 Bit Score: 535.93 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499824578 160 LNPNFTFETFVEGKSNQLARAASRQVAENPGGAYNPLFLYGGVGLGKTHLMHAVGNHLAGQRENAKVVYLHSERFVADMV 239
Cdd:COG0593 1 LNPRYTFDNFVVGPSNRLAHAAALAVAEWPGKAYNPLFLYGGVGLGKTHLLHAIGNEALENNPGARVVYLTAEEFTNDFI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499824578 240 KALQLNAINDFKRFYRSVDALLIDDIQFFAGKERSQEEFFHTFNALLEGGQQMILTSDRYPKEISGVEERLKSRFGWGLT 319
Cdd:COG0593 81 NAIRNNTIEEFKEKYRSVDVLLIDDIQFLAGKEATQEEFFHTFNALREAGKQIVLTSDRPPKELPGLEERLRSRLEWGLV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499824578 320 VAIEPPELETRVAILMKKADQAKVDLPHDAAFFIAQKIRSNVRELEGALKKVIADSHFMGKPITQDFIRESLKDLLALQD 399
Cdd:COG0593 161 VDIQPPDLETRIAILRKKAADRGLELPDEVLEYLARRIERNVRELEGALNRLDAYALLTGRPITLELAREVLKDLLRAQK 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 499824578 400 KQVGVDNIQRTVAEYYKIKLADLLSKRRSRSVARPRQVAMALAKELTNHSLPEIGDAFGGRDH 462
Cdd:COG0593 241 KEITIEDIQKAVAEYFGVSVADLLSKSRTREIARPRQIAMYLARELTDLSLPEIGRAFGGRDH 303
|
|
| Bac_DnaA |
pfam00308 |
Bacterial dnaA protein; |
160-377 |
3.11e-128 |
|
Bacterial dnaA protein;
Pssm-ID: 278724 [Multi-domain] Cd Length: 219 Bit Score: 371.66 E-value: 3.11e-128
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499824578 160 LNPNFTFETFVEGKSNQLARAASRQVAENPGGAYNPLFLYGGVGLGKTHLMHAVGNHLAGQRENAKVVYLHSERFVADMV 239
Cdd:pfam00308 1 LNPRYTFENFVIGPSNRFAHAAALTVAKAPGKAYNPLFIYGGVGLGKTHLLHAIGNYALQNAPNLRVVYLTAEEFLNDFV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499824578 240 KALQLNAINDFKRFYRSVDALLIDDIQFFAGKERSQEEFFHTFNALLEGGQQMILTSDRYPKEISGVEERLKSRFGWGLT 319
Cdd:pfam00308 81 DAIRDNKTNQFKEKYRNVDVLLIDDIQFLAGKEGTQEEFFHTFNALHESGKQIVFSSDRPPKELEELEDRLRSRFQWGLV 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 499824578 320 VAIEPPELETRVAILMKKADQAKVDLPHDAAFFIAQKIRSNVRELEGALKKVIADSHF 377
Cdd:pfam00308 161 TDIEPPDLETRLAILRKKAEAEGIEIPPEVLNFIAQRVTDNVRELEGALNRLLAYSSL 218
|
|
| Bac_DnaA_C |
cd06571 |
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA ... |
404-493 |
1.59e-40 |
|
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA contains a helix-turn-helix motif that specifically interacts with the DnaA box, a 9-mer motif that occurs repetitively in the replication origin oriC. Multiple copies of DnaA, which is an ATPase, bind to 9-mers at the origin and form an initial complex in which the DNA strands are being separated in an ATP-dependent step.
Pssm-ID: 119330 [Multi-domain] Cd Length: 90 Bit Score: 140.73 E-value: 1.59e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499824578 404 VDNIQRTVAEYYKIKLADLLSKRRSRSVARPRQVAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKVQTLKEESADIR 483
Cdd:cd06571 1 IELIIEAVAEYFGISVEDLRSKSRKKEIALARQIAMYLARELTGLSLPEIGRAFGGRDHSTVLHAVRKIEELLEEDPELK 80
|
90
....*....|
gi 499824578 484 EDYKNLLRLL 493
Cdd:cd06571 81 EDVEELEKKL 90
|
|
| Bac_DnaA_C |
smart00760 |
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding. |
404-471 |
3.55e-36 |
|
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding.
Pssm-ID: 197863 [Multi-domain] Cd Length: 69 Bit Score: 128.39 E-value: 3.55e-36
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 499824578 404 VDNIQRTVAEYYKIKLADLLSKRRSRSVARPRQVAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRK 471
Cdd:smart00760 2 IEEIIEAVAEYFGVKPEDLKSKSRKREIVLARQIAMYLARELTDLSLPEIGKIFGGRDHSTVLHACRK 69
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| DnaA |
TIGR00362 |
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; ... |
6-493 |
0e+00 |
|
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273037 [Multi-domain] Cd Length: 437 Bit Score: 691.58 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499824578 6 WQQCLNFLQDELSSQQFNTWIRPLQAEDGDANELCLLAPNRFVRDWVNDKYLKRINELLRDLaSGKPPKVQLTVGSrrnv 85
Cdd:TIGR00362 1 WNRILERLEKELSEQEYNTWFKPLKLLSIEGNTLIISVPNEFVKEWIEKNYLDLIEELLQEL-FGAEIEIEFTVGE---- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499824578 86 amssprdlgaPVSATTMNASRPTEAPAVHAAPRAKgdyadeqeidrlrereetprrgggerqvqvegslkhQSGLNPNFT 165
Cdd:TIGR00362 76 ----------DEEELEPNSKKPEPAPPEAPAPPSS------------------------------------ASGLNPKYT 109
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499824578 166 FETFVEGKSNQLARAASRQVAENPGGAYNPLFLYGGVGLGKTHLMHAVGNHLAGQRENAKVVYLHSERFVADMVKALQLN 245
Cdd:TIGR00362 110 FDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVLYVSSEKFTNDFVNALRNN 189
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499824578 246 AINDFKRFYRSVDALLIDDIQFFAGKERSQEEFFHTFNALLEGGQQMILTSDRYPKEISGVEERLKSRFGWGLTVAIEPP 325
Cdd:TIGR00362 190 KMEEFKEKYRSVDLLLIDDIQFLAGKERTQEEFFHTFNALHENNKQIVLTSDRPPKELPGLEDRLRSRFEWGLVVDIEPP 269
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499824578 326 ELETRVAILMKKADQAKVDLPHDAAFFIAQKIRSNVRELEGALKKVIADSHFMGKPITQDFIRESLKDLLALQDKQVGVD 405
Cdd:TIGR00362 270 DLETRLAILQKKAEEEGLELPDEVLEFIAKNITSNVRELEGALNRLLAYASLTGKPITLELAKEALKDLLRAQKKEITIE 349
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499824578 406 NIQRTVAEYYKIKLADLLSKRRSRSVARPRQVAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKVQTLKEESADIRED 485
Cdd:TIGR00362 350 NIQKVVAKYYNIKVSDLKSKKRTRNIVRPRQIAMYLAKELTDLSLPEIGKAFGGRDHTTVLHAVRKIEKLIETDAELKED 429
|
....*...
gi 499824578 486 YKNLLRLL 493
Cdd:TIGR00362 430 IEELKRKL 437
|
|
| dnaA |
PRK00149 |
chromosomal replication initiator protein DnaA; |
1-495 |
0e+00 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 234667 [Multi-domain] Cd Length: 401 Bit Score: 690.34 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499824578 1 MSVALWQQCLNFLQDELSSQQFNTWIRPLQAEDGDANELCLLAPNRFVRDWVNDKYLKRINELLRdlasgkppkvqltvg 80
Cdd:PRK00149 1 NLQSLWEKVLERLKDELSEQEYETWIKPLKALSLEDNTLTLYVPNRFVKDWIEKNYLDLIEEALQ--------------- 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499824578 81 srrnvamssprdlgapvsattmnasrpteapavhaaprakgdyadeqeidrlrereetprrgggerqvqvegslkhqsgL 160
Cdd:PRK00149 66 -------------------------------------------------------------------------------L 66
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499824578 161 NPNFTFETFVEGKSNQLARAASRQVAENPGGAYNPLFLYGGVGLGKTHLMHAVGNHLAGQRENAKVVYLHSERFVADMVK 240
Cdd:PRK00149 67 NPKYTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVN 146
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499824578 241 ALQLNAINDFKRFYRSVDALLIDDIQFFAGKERSQEEFFHTFNALLEGGQQMILTSDRYPKEISGVEERLKSRFGWGLTV 320
Cdd:PRK00149 147 ALRNNTMEEFKEKYRSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTV 226
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499824578 321 AIEPPELETRVAILMKKADQAKVDLPHDAAFFIAQKIRSNVRELEGALKKVIADSHFMGKPITQDFIRESLKDLLALQDK 400
Cdd:PRK00149 227 DIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDLLAAQKK 306
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499824578 401 QVGVDNIQRTVAEYYKIKLADLLSKRRSRSVARPRQVAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKVQTLKEESA 480
Cdd:PRK00149 307 KITIENIQKVVAEYYNIKVSDLKSKSRTRNIARPRQIAMYLAKELTDLSLPEIGRAFGGRDHTTVLHAVRKIEKLLEEDP 386
|
490
....*....|....*
gi 499824578 481 DIREDYKNLLRLLTS 495
Cdd:PRK00149 387 ELKEDVEELKRKLKS 401
|
|
| DnaA |
COG0593 |
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair]; |
160-462 |
0e+00 |
|
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair];
Pssm-ID: 440358 [Multi-domain] Cd Length: 303 Bit Score: 535.93 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499824578 160 LNPNFTFETFVEGKSNQLARAASRQVAENPGGAYNPLFLYGGVGLGKTHLMHAVGNHLAGQRENAKVVYLHSERFVADMV 239
Cdd:COG0593 1 LNPRYTFDNFVVGPSNRLAHAAALAVAEWPGKAYNPLFLYGGVGLGKTHLLHAIGNEALENNPGARVVYLTAEEFTNDFI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499824578 240 KALQLNAINDFKRFYRSVDALLIDDIQFFAGKERSQEEFFHTFNALLEGGQQMILTSDRYPKEISGVEERLKSRFGWGLT 319
Cdd:COG0593 81 NAIRNNTIEEFKEKYRSVDVLLIDDIQFLAGKEATQEEFFHTFNALREAGKQIVLTSDRPPKELPGLEERLRSRLEWGLV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499824578 320 VAIEPPELETRVAILMKKADQAKVDLPHDAAFFIAQKIRSNVRELEGALKKVIADSHFMGKPITQDFIRESLKDLLALQD 399
Cdd:COG0593 161 VDIQPPDLETRIAILRKKAADRGLELPDEVLEYLARRIERNVRELEGALNRLDAYALLTGRPITLELAREVLKDLLRAQK 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 499824578 400 KQVGVDNIQRTVAEYYKIKLADLLSKRRSRSVARPRQVAMALAKELTNHSLPEIGDAFGGRDH 462
Cdd:COG0593 241 KEITIEDIQKAVAEYFGVSVADLLSKSRTREIARPRQIAMYLARELTDLSLPEIGRAFGGRDH 303
|
|
| Bac_DnaA |
pfam00308 |
Bacterial dnaA protein; |
160-377 |
3.11e-128 |
|
Bacterial dnaA protein;
Pssm-ID: 278724 [Multi-domain] Cd Length: 219 Bit Score: 371.66 E-value: 3.11e-128
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499824578 160 LNPNFTFETFVEGKSNQLARAASRQVAENPGGAYNPLFLYGGVGLGKTHLMHAVGNHLAGQRENAKVVYLHSERFVADMV 239
Cdd:pfam00308 1 LNPRYTFENFVIGPSNRFAHAAALTVAKAPGKAYNPLFIYGGVGLGKTHLLHAIGNYALQNAPNLRVVYLTAEEFLNDFV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499824578 240 KALQLNAINDFKRFYRSVDALLIDDIQFFAGKERSQEEFFHTFNALLEGGQQMILTSDRYPKEISGVEERLKSRFGWGLT 319
Cdd:pfam00308 81 DAIRDNKTNQFKEKYRNVDVLLIDDIQFLAGKEGTQEEFFHTFNALHESGKQIVFSSDRPPKELEELEDRLRSRFQWGLV 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 499824578 320 VAIEPPELETRVAILMKKADQAKVDLPHDAAFFIAQKIRSNVRELEGALKKVIADSHF 377
Cdd:pfam00308 161 TDIEPPDLETRLAILRKKAEAEGIEIPPEVLNFIAQRVTDNVRELEGALNRLLAYSSL 218
|
|
| dnaA |
PRK14086 |
chromosomal replication initiator protein DnaA; |
106-482 |
4.43e-114 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 237605 [Multi-domain] Cd Length: 617 Bit Score: 349.51 E-value: 4.43e-114
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499824578 106 RPTEAPAVHAAPRAKG--DYADEQEIDRLREREETPRRGggeRQVQVEGSLKHQSGLNPNFTFETFVEGKSNQLARAASR 183
Cdd:PRK14086 228 RPEPPPGAGHVHRGGPgpPERDDAPVVPIRPSAPGPLAA---QPAPAPGPGEPTARLNPKYTFDTFVIGASNRFAHAAAV 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499824578 184 QVAENPGGAYNPLFLYGGVGLGKTHLMHAVGNHLAGQRENAKVVYLHSERFVADMVKALQLNAINDFKRFYRSVDALLID 263
Cdd:PRK14086 305 AVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYREMDILLVD 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499824578 264 DIQFFAGKERSQEEFFHTFNALLEGGQQMILTSDRYPKEISGVEERLKSRFGWGLTVAIEPPELETRVAILMKKADQAKV 343
Cdd:PRK14086 385 DIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQL 464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499824578 344 DLPHDAAFFIAQKIRSNVRELEGALKKVIADSHFMGKPITQDFIRESLKDLLALQDK-QVGVDNIQRTVAEYYKIKLADL 422
Cdd:PRK14086 465 NAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLRDLIPEDSApEITAAAIMAATADYFGLTVEDL 544
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 499824578 423 LSKRRSRSVARPRQVAMALAKELTNHSLPEIGDAFgGRDHTTVLHACRKVQTLKEESADI 482
Cdd:PRK14086 545 CGTSRSRVLVTARQIAMYLCRELTDLSLPKIGQQF-GRDHTTVMHADRKIRALMAERRSI 603
|
|
| PRK12422 |
PRK12422 |
chromosomal replication initiator protein DnaA; |
6-495 |
2.97e-76 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 183521 [Multi-domain] Cd Length: 445 Bit Score: 246.29 E-value: 2.97e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499824578 6 WQQCLNFLQDELSSQQFNTWIRPLQAEDGDANELCLLAPNRFVRDWVNDKYLKRINELLRDlASGKPPKVQLTVgsrrnv 85
Cdd:PRK12422 4 WEEFLLLQEKEIGTETVDKWLRSLKVLCFDACNLYLEAKDSFQVTWFEEHIRHKVKASLVN-NNGKPIRVHVTS------ 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499824578 86 amsspRDLGAPVSATTMNASRPTEAPAVHaaprakgdYADeqeidrlrereetprrgggerqvqvegslkhqsgLNPNFT 165
Cdd:PRK12422 77 -----LDKSTPFKKEKQIQQEKTAYFTMK--------YGE----------------------------------LDPLMT 109
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499824578 166 FETFVEGKSNQLARAASRQVA----ENPGGAYNPLFLYGGVGLGKTHLMHAVGNHLAGQreNAKVVYLHSERFVADMVKA 241
Cdd:PRK12422 110 FANFLVTPENDLPHRILQEFTkvseQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRES--GGKILYVRSELFTEHLVSA 187
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499824578 242 LQLNAINDFKRFYRSVDALLIDDIQFFAGKERSQEEFFHTFNALLEGGQQMILTSDRYPKEISGVEERLKSRFGWGLTVA 321
Cdd:PRK12422 188 IRSGEMQRFRQFYRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIP 267
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499824578 322 IEPPELETRVAILMKKADQAKVDLPHDAAFFIAQKIRSNVRELEGALKKVIADSHFMGK---PITQDFIRESLKDLL-AL 397
Cdd:PRK12422 268 LHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSSNVKSLLHALTLLAKRVAYKKLshqLLYVDDIKALLHDVLeAA 347
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499824578 398 QDKQVGVDNIQRTVAEYYKIKLADLLSKRRSRSVARPRQVAMALAKELTNHSLPEIGDAFgGRDHTTVLHACRKV-QTLK 476
Cdd:PRK12422 348 ESVRLTPSKIIRAVAQYYGVSPESILGRSQSREYVLPRQVAMYLCRQKLSLSYVKIGDVF-SRDHSTVISSIRAIsQKLE 426
|
490
....*....|....*....
gi 499824578 477 EESADIREDYKNLLRLLTS 495
Cdd:PRK12422 427 EDDRDISMAIQEITKRLSS 445
|
|
| Bac_DnaA_C |
cd06571 |
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA ... |
404-493 |
1.59e-40 |
|
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA contains a helix-turn-helix motif that specifically interacts with the DnaA box, a 9-mer motif that occurs repetitively in the replication origin oriC. Multiple copies of DnaA, which is an ATPase, bind to 9-mers at the origin and form an initial complex in which the DNA strands are being separated in an ATP-dependent step.
Pssm-ID: 119330 [Multi-domain] Cd Length: 90 Bit Score: 140.73 E-value: 1.59e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499824578 404 VDNIQRTVAEYYKIKLADLLSKRRSRSVARPRQVAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKVQTLKEESADIR 483
Cdd:cd06571 1 IELIIEAVAEYFGISVEDLRSKSRKKEIALARQIAMYLARELTGLSLPEIGRAFGGRDHSTVLHAVRKIEELLEEDPELK 80
|
90
....*....|
gi 499824578 484 EDYKNLLRLL 493
Cdd:cd06571 81 EDVEELEKKL 90
|
|
| Bac_DnaA_C |
pfam08299 |
Bacterial dnaA protein helix-turn-helix; |
404-472 |
3.46e-39 |
|
Bacterial dnaA protein helix-turn-helix;
Pssm-ID: 462419 [Multi-domain] Cd Length: 69 Bit Score: 136.38 E-value: 3.46e-39
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 499824578 404 VDNIQRTVAEYYKIKLADLLSKRRSRSVARPRQVAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKV 472
Cdd:pfam08299 1 IEKIIEAVAEYFGISPEDLKSKSRKREIALARQIAMYLARELTDLSLPEIGRAFGGRDHSTVIHACKKI 69
|
|
| Bac_DnaA_C |
smart00760 |
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding. |
404-471 |
3.55e-36 |
|
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding.
Pssm-ID: 197863 [Multi-domain] Cd Length: 69 Bit Score: 128.39 E-value: 3.55e-36
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 499824578 404 VDNIQRTVAEYYKIKLADLLSKRRSRSVARPRQVAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRK 471
Cdd:smart00760 2 IEEIIEAVAEYFGVKPEDLKSKSRKREIVLARQIAMYLARELTDLSLPEIGKIFGGRDHSTVLHACRK 69
|
|
| DnaA_homol_Hda |
TIGR03420 |
DnaA regulatory inactivator Hda; Members of this protein family are Hda (Homologous to DnaA). ... |
159-392 |
1.95e-25 |
|
DnaA regulatory inactivator Hda; Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 274571 [Multi-domain] Cd Length: 226 Bit Score: 104.19 E-value: 1.95e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499824578 159 GLNPNFTFETFVEGkSNQLARAASRQVAENPGGayNPLFLYGGVGLGKTHLMHAVGNHLAGQRENAkvVYLHserfVADM 238
Cdd:TIGR03420 7 GLPDDPTFDNFYAG-GNAELLAALRQLAAGKGD--RFLYLWGESGSGKSHLLQAACAAAEERGKSA--IYLP----LAEL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499824578 239 VKALqLNAINDFKRFyrsvDALLIDDIQFFAGKERSQEEFFHTFNALLEGGQQMILTSDRYPKEISGVEERLKSRFGWGL 318
Cdd:TIGR03420 78 AQAD-PEVLEGLEQA----DLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGL 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 499824578 319 TVAIEPPELETRVAILMKKADQAKVDLPHDAAFFIAQKIRSNVRELEGALKKVIADSHFMGKPITQDFIRESLK 392
Cdd:TIGR03420 153 VFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSRDMGSLMALLDALDRASLAAKRKITIPFVKEVLA 226
|
|
| DnaA_N |
pfam11638 |
DnaA N-terminal domain; This family of proteins represents the N-terminal domain of DnaA, a ... |
4-66 |
4.66e-22 |
|
DnaA N-terminal domain; This family of proteins represents the N-terminal domain of DnaA, a protein involved in the initiation of bacterial chromosomal replication. The structure of this domain is known. It is also found in three copies in some proteins. The exact function of this domain is uncertain but it has been suggested to play a role in oligomerization.
Pssm-ID: 463316 [Multi-domain] Cd Length: 65 Bit Score: 89.26 E-value: 4.66e-22
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 499824578 4 ALWQQCLNFLQDELSSQQFNTWIRPLQAEDGDANE-LCLLAPNRFVRDWVNDKYLKRINELLRD 66
Cdd:pfam11638 2 ELWERVLERLRKEVGEQTFNTWIKPLTLVDLDDGGsLTLSVPNRFVRDWVEEHYLDRILELWQE 65
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
175-318 |
2.52e-17 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 78.73 E-value: 2.52e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499824578 175 NQLARAASRQVAENPggAYNPLFLYGGVGLGKTHLMHAVGNHLAgqRENAKVVYLHSERFVADMVKALQLNAINDFKRF- 253
Cdd:cd00009 3 QEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFe 78
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 499824578 254 ---YRSVDALLIDDIQFF-AGKERSQEEFFHTFNALLEGG---QQMILTSDRYP-KEISGVEERLKSRFGWGL 318
Cdd:cd00009 79 laeKAKPGVLFIDEIDSLsRGAQNALLRVLETLNDLRIDRenvRVIGATNRPLLgDLDRALYDRLDIRIVIPL 151
|
|
| PRK08084 |
PRK08084 |
DnaA inactivator Hda; |
165-392 |
6.24e-17 |
|
DnaA inactivator Hda;
Pssm-ID: 181224 [Multi-domain] Cd Length: 235 Bit Score: 80.11 E-value: 6.24e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499824578 165 TFETFVEGKSNQLArAASRQVAENPGGAYnpLFLYGGVGLGKTHLMHAVGNHLAgQRENAkVVYLHSER---FVADMVKA 241
Cdd:PRK08084 20 TFASFYPGDNDSLL-AALQNALRQEHSGY--IYLWSREGAGRSHLLHAACAELS-QRGRA-VGYVPLDKrawFVPEVLEG 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499824578 242 LQlnaindfkrfyrSVDALLIDDIQFFAGKERSQEEFFHTFNALLEGGQ-QMILTSDRYPKEISGVEERLKSRFGWGLTV 320
Cdd:PRK08084 95 ME------------QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRtRLLITGDRPPRQLNLGLPDLASRLDWGQIY 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 499824578 321 AIEPPELETRVAILMKKADQAKVDLPHDAAFFIAQKIRSNVRELEGALKKVIADSHFMGKPITQDFIRESLK 392
Cdd:PRK08084 163 KLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 234
|
|
| DnaC |
COG1484 |
DNA replication protein DnaC [Replication, recombination and repair]; |
134-296 |
6.70e-11 |
|
DNA replication protein DnaC [Replication, recombination and repair];
Pssm-ID: 441093 [Multi-domain] Cd Length: 242 Bit Score: 62.49 E-value: 6.70e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499824578 134 EREETPRRgggERQVQvegSLKHQSGLNPNFTFETFVEGKSNQLARAASRQVAEnpgGAY----NPLFLYGGVGLGKTHL 209
Cdd:COG1484 45 EAEVAERE---QRRIE---RRLKAARFPAAKTLEDFDFDAQPGLDRRQILELAT---LDFiergENLILLGPPGTGKTHL 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499824578 210 MHAVGNHLAgqRENAKVVYLHSERFVADMVKALQLNAINDFKRFYRSVDALLIDDIQFFAGKERSQEEFFHTFNALLEGG 289
Cdd:COG1484 116 AIALGHEAC--RAGYRVRFTTAPDLVNELKEARADGRLERLLKRLAKVDLLILDELGYLPLDAEGAELLFELISDRYERR 193
|
....*..
gi 499824578 290 qQMILTS 296
Cdd:COG1484 194 -STIITS 199
|
|
| PRK08903 |
PRK08903 |
DnaA regulatory inactivator Hda; Validated |
165-395 |
7.91e-11 |
|
DnaA regulatory inactivator Hda; Validated
Pssm-ID: 236347 [Multi-domain] Cd Length: 227 Bit Score: 61.92 E-value: 7.91e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499824578 165 TFETFVEGKSNQLARAASRQVAENPGGAYnpLFLYGGVGLGKTHLMHAVGNHLAGQRENAKVVYLHSERFVADMVKALQL 244
Cdd:PRK08903 16 TFDNFVAGENAELVARLRELAAGPVADRF--FYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLAFDFDPEAEL 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499824578 245 NAINDfkrfyrsVDALliDDIQffagkersQEEFFHTFNALLEGGQQMILTSDRYPKEISGVEERLKSRFGWGLTVAIEP 324
Cdd:PRK08903 94 YAVDD-------VERL--DDAQ--------QIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKP 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 499824578 325 PELETRVAILMKKADQAKVDLPHDAAFFIAQKIRSNVRELEGALKKVIADSHFMGKPITQDFIRESLKDLL 395
Cdd:PRK08903 157 LSDADKIAALKAAAAERGLQLADEVPDYLLTHFRRDMPSLMALLDALDRYSLEQKRPVTLPLLREMLAQPE 227
|
|
| PRK06030 |
PRK06030 |
hypothetical protein; Provisional |
404-480 |
1.36e-10 |
|
hypothetical protein; Provisional
Pssm-ID: 180356 Cd Length: 124 Bit Score: 58.63 E-value: 1.36e-10
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 499824578 404 VDNIQRTVAEYYKIKLADLLS-KRRSRSVARPRQVAMALAKELTNHSLPEIGDAFGgRDHTTVLHACRKVQTLKEESA 480
Cdd:PRK06030 25 CEAVIDLLALAFGVSGAEIASpLRGRREVSRIRQIAMYVAHVSLGWPMNEVALAFG-RDRTTVGHACHTVEDLRDDAA 101
|
|
| PRK08116 |
PRK08116 |
hypothetical protein; Validated |
126-313 |
2.95e-10 |
|
hypothetical protein; Validated
Pssm-ID: 236153 [Multi-domain] Cd Length: 268 Bit Score: 60.80 E-value: 2.95e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499824578 126 EQEIDRLREREETPRrgggERQVQVEgSLKHQSGLNPNF---TFETF-VEGKSNQLARAASRQV-------AENPGgayn 194
Cdd:PRK08116 46 EREAEEAKEREEENR----EKQRRIE-RLKSNSLLDEKFrnsTFENFlFDKGSEKAYKIARKYVkkfeemkKENVG---- 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499824578 195 pLFLYGGVGLGKTHLMHAVGNHLAGQREnaKVVYLHSERFVADMVKALQLNAINDFKRFYRSV---DALLIDDIqffaGK 271
Cdd:PRK08116 117 -LLLWGSVGTGKTYLAACIANELIEKGV--PVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLvnaDLLILDDL----GA 189
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 499824578 272 ERS----QEEFFHTFNALLEGGQQMILTSDRYPKEI-SGVEERLKSR 313
Cdd:PRK08116 190 ERDtewaREKVYNIIDSRYRKGLPTIVTTNLSLEELkNQYGKRIYDR 236
|
|
| PRK06835 |
PRK06835 |
DNA replication protein DnaC; Validated |
196-314 |
1.74e-08 |
|
DNA replication protein DnaC; Validated
Pssm-ID: 235871 [Multi-domain] Cd Length: 329 Bit Score: 56.06 E-value: 1.74e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499824578 196 LFLYGGVGLGKTHLMHAVGNHLAgqrENAK-VVYLHSERFVaDMVKALQLNAINDFKRFY---RSVDALLIDDIqffaGK 271
Cdd:PRK06835 186 LLFYGNTGTGKTFLSNCIAKELL---DRGKsVIYRTADELI-EILREIRFNNDKELEEVYdllINCDLLIIDDL----GT 257
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 499824578 272 ERSQE----EFFHTFNALLEGGQQMILTS--------DRYPKEISGveeRLKSRF 314
Cdd:PRK06835 258 EKITEfsksELFNLINKRLLRQKKMIISTnlsleellKTYSERISS---RLLGNF 309
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
194-313 |
1.17e-07 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 51.22 E-value: 1.17e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499824578 194 NPLFLYGGVGLGKTHLMHAVGNHLagQRENAKVVYLHSERFVADMVKALQLNAINDFKRF---------------YRSVD 258
Cdd:smart00382 3 EVILIVGPPGSGKTTLARALAREL--GPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASgsgelrlrlalalarKLKPD 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 499824578 259 ALLIDDIQFFAGKERSQEEFFHTFNALL-----EGGQQMILTSDRYPKEISGVEERLKSR 313
Cdd:smart00382 81 VLILDEITSLLDAEQEALLLLLEELRLLlllksEKNLTVILTTNDEKDLGPALLRRRFDR 140
|
|
| PRK08939 |
PRK08939 |
primosomal protein DnaI; Reviewed |
196-265 |
8.45e-07 |
|
primosomal protein DnaI; Reviewed
Pssm-ID: 236353 [Multi-domain] Cd Length: 306 Bit Score: 50.64 E-value: 8.45e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499824578 196 LFLYGGVGLGKTHLMHAVGNHLAgqRENAKVVYLHSERFVADMVKALQLNAINDFKRFYRSVDALLIDDI 265
Cdd:PRK08939 159 LYLYGDFGVGKSYLLAAIANELA--KKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVKEAPVLMLDDI 226
|
|
| PRK07952 |
PRK07952 |
DNA replication protein DnaC; Validated |
157-265 |
5.55e-04 |
|
DNA replication protein DnaC; Validated
Pssm-ID: 181180 [Multi-domain] Cd Length: 244 Bit Score: 41.68 E-value: 5.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499824578 157 QSGLNP---NFTFETF-VEGKSNQLARAASRQVAENPGGAYNPLFLYGGVGLGKTHLMHAVGNHLAGQRENAKVVYlhse 232
Cdd:PRK07952 59 RSGIRPlhqNCSFENYrVECEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT---- 134
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 499824578 233 rfVADMVKAL----------QLNAINDFKrfyrSVDALLIDDI 265
Cdd:PRK07952 135 --VADIMSAMkdtfsnsetsEEQLLNDLS----NVDLLVIDEI 171
|
|
| PRK12377 |
PRK12377 |
putative replication protein; Provisional |
111-265 |
1.28e-03 |
|
putative replication protein; Provisional
Pssm-ID: 183482 [Multi-domain] Cd Length: 248 Bit Score: 40.59 E-value: 1.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499824578 111 PAVHAAPRAKGDYADEQEIDRLREREETPRRgggERQVQVEGSLkHQSGLNP---NFTFETF-VEGKSNQLARAASRQVA 186
Cdd:PRK12377 19 QGVQPPFRTVDEWREWQLAEGRKRSEEINRQ---NQQLRVEKIL-NRSGIQPlhrKCSFANYqVQNDGQRYALSQAKSIA 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499824578 187 ENPGGAYNPLFLYGGVGLGKTHLMHAVGNHLAGQRENAKVVYlhserfVADMVKALQLNAIN-----DFKRFYRSVDALL 261
Cdd:PRK12377 95 DELMTGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT------VPDVMSRLHESYDNgqsgeKFLQELCKVDLLV 168
|
....
gi 499824578 262 IDDI 265
Cdd:PRK12377 169 LDEI 172
|
|
| PRK06921 |
PRK06921 |
hypothetical protein; Provisional |
194-322 |
3.24e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 180750 [Multi-domain] Cd Length: 266 Bit Score: 39.38 E-value: 3.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499824578 194 NPLFLYGGVGLGKTHLMHAVGNHLAGQRENAKVVYLHSERF--VADMVKAL--QLNAIndfkrfyRSVDALLIDDI-QFF 268
Cdd:PRK06921 118 NSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFgdLKDDFDLLeaKLNRM-------KKVEVLFIDDLfKPV 190
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 499824578 269 AGKERSQ----EEFFHTFNALLEGGQQMILTSDRYPKEISGVEERLKSRF---GWGLTVAI 322
Cdd:PRK06921 191 NGKPRATewqiEQMYSVLNYRYLNHKPILISSELTIDELLDIDEALGSRIvemCKDYLVII 251
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