|
Name |
Accession |
Description |
Interval |
E-value |
| PQQ_2 |
pfam13360 |
PQQ-like domain; This domain contains several repeats of the PQQ repeat. |
94-329 |
1.74e-42 |
|
PQQ-like domain; This domain contains several repeats of the PQQ repeat.
Pssm-ID: 433144 [Multi-domain] Cd Length: 233 Bit Score: 149.09 E-value: 1.74e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 94 DQGRLTALNSgDTSKVLWYVALAGGRrsvySSSLIHSRGVILCA-IDNVLYGLDPSTGQVKWSSTLRNFISGNLvLLNEG 172
Cdd:pfam13360 1 ADGVVTALDA-ATGAELWRVDLETGL----GGGVAVDGGRLFVAtGGGQLVALDAATGKLLWRQTLSGEVLGAP-LVAGG 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 173 QSVAfMTIDGYLCVFDVETGGLLWHREESSVQVRVKSDLSVAYSSGkhYVIVVLPDGRVLCLDSYSGDKMWESEL----R 248
Cdd:pfam13360 75 RVFV-VAGDGSLIALDAADGRRLWSYQRSGEPLALRSSGSPAVVGD--TVVAGFSSGKLVALDPATGKVRWEAPLaaprG 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 249 RRSMGSIGSIEITPVVAGSEVFVVDDSGALSSIDLETGKITWSEDLGVLSLSKEDEETLFVVTDTGELLAYDVDSKVRLW 328
Cdd:pfam13360 152 TNELERLVDITGTPVVAGGRVFASAYQGRLVAFDAATGRRLWTREISGPNGPILDGDLLYVVSDDGELYALDRATGAVVW 231
|
.
gi 499769786 329 K 329
Cdd:pfam13360 232 K 232
|
|
| assembly_YfgL |
TIGR03300 |
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a ... |
78-362 |
1.50e-23 |
|
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274511 [Multi-domain] Cd Length: 377 Bit Score: 100.78 E-value: 1.50e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 78 LTIVPGDVSDVIVTLDDQGRLTALNsGDTSKVLWYVA----LAGGrrsVYSSSlihsRGVILCAIDNVLYGLDPSTGQVK 153
Cdd:TIGR03300 57 LRLQPAVAGGKVYAADADGTVAALD-AETGKRLWRVDlderLSGG---VGADG----GLVFVGTEKGEVIALDAEDGKEL 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 154 WSSTL------RNFISGNLVLLNegqsvafmTIDGYLCVFDVETGGLLWHREESSVQVRVKSDLSVAYSSGkhYVIVVLP 227
Cdd:TIGR03300 129 WRAKLssevlsPPLVANGLVVVR--------TNDGRLTALDAATGERLWTYSRVTPPLTLRGSASPVIADG--GVLVGFA 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 228 DGRVLCLDSYSGDKMWEselRRRSMGSiGSIEI--------TPVVAGSEVFVVDDSGALSSIDLETGKITWSEDLGVLSL 299
Cdd:TIGR03300 199 GGKLVALDLQTGQPLWE---QRVALPK-GRTELerlvdvdgDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASSYQG 274
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 499769786 300 SKEDEETLFVVTDTGELLAYDVDSKVRLWKLSLgkfgkkkcLRWR---APVMVSGKLWLLSMEGYL 362
Cdd:TIGR03300 275 PAVDDNRLYVTDADGVVVALDRRSGSELWKNDE--------LKYRqltAPAVLGGYLVVGDFEGYL 332
|
|
| PQQ |
COG1520 |
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell ... |
78-362 |
1.69e-23 |
|
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 441129 [Multi-domain] Cd Length: 370 Bit Score: 100.66 E-value: 1.69e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 78 LTIVPGDVSDVIVTLDDQGRLTALNsGDTSKVLWYVA----LAGGrrsVYSSSlihsRGVILCAIDNVLYGLDPSTGQVK 153
Cdd:COG1520 49 SRLAPAVAGDRVYAADADGRVAALD-AATGKELWRVDlgepLSGG---VGADG----GLVVVGTEDGEVIALDADDGEEL 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 154 WSSTLRN------FISGNLVLLNegqsvafmTIDGYLCVFDVETGGLLW--HREESSVQVRVKSdlSVAYSSGKhyVIVV 225
Cdd:COG1520 121 WRARLSSevlaapAVAGGRVVVR--------TGDGRVYALDAATGERLWsyQRPVPALTLRGTS--SPVIVGGA--VLVG 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 226 LPDGRVLCLDSYSGDKMWE---------SELRRrsmgsIGSIEITPVVAGSEVFVVDDSGALSSIDLETGKITWSEDLGV 296
Cdd:COG1520 189 FANGKLVALDLANGQPLWEqrvaqprgrTELER-----LVDVDGTPVVDGGVVYAVAYQGRLAALDLRSGRVLWSRDLSS 263
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 499769786 297 ---LSLskeDEETLFVVTDTGELLAYDVDSKVRLWKLSLgkfgkkkcLRWR---APVMVSGKLWLLSMEGYL 362
Cdd:COG1520 264 ytgLAV---DGNNLYVTDDDGRVWALDRRNGAELWKQDA--------LLYRgltAPVVLGDYVVVGDFEGYL 324
|
|
| PRK11138 |
PRK11138 |
outer membrane biogenesis protein BamB; Provisional |
87-398 |
1.59e-18 |
|
outer membrane biogenesis protein BamB; Provisional
Pssm-ID: 236857 [Multi-domain] Cd Length: 394 Bit Score: 86.52 E-value: 1.59e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 87 DVIVTLDDQGRLTALNSgDTSKVLWYVALAGGRRSVYSSSLIHSRGVILCAIDNV--------LYGLDPSTGQVKWSSTL 158
Cdd:PRK11138 70 NKVYAADRAGLVKALDA-DTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVyigsekgqVYALNAEDGEVAWQTKV 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 159 ------RNFISGNLVLLNegqsvafmTIDGYLCVFDVETGGLLWHREESSVQVRVKSDLSVAYSSGKhyVIVVLPDGRVL 232
Cdd:PRK11138 149 agealsRPVVSDGLVLVH--------TSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGG--AIVGGDNGRVS 218
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 233 CLDSYSGDKMWE---------SELRRrsmgsIGSIEITPVVAGSEVFVVDDSGALSSIDLETGKITWSEDLGVLSLSKED 303
Cdd:PRK11138 219 AVLMEQGQLIWQqrisqptgaTEIDR-----LVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGSVNDFAVD 293
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 304 EETLFVVTDTGELLAYDVDSKVRLWKLSLgkfgkkkcLRWR---APVMVSGKLWLLSMEGYLVGVNAFSGVIEESYMISG 380
Cdd:PRK11138 294 GGRIYLVDQNDRVYALDTRGGVELWSQSD--------LLHRlltAPVLYNGYLVVGDSEGYLHWINREDGRFVAQQKVDS 365
|
330
....*....|....*...
gi 499769786 381 AQSLRYPIKADASIYVAA 398
Cdd:PRK11138 366 SGFLSEPVVADDKLLIQA 383
|
|
| BamB_YfgL |
cd10276 |
Beta-barrel assembly machinery (Bam) complex component B and related proteins; BamB (YflG) is ... |
98-404 |
1.05e-17 |
|
Beta-barrel assembly machinery (Bam) complex component B and related proteins; BamB (YflG) is a non-essential component of the beta-barrel assembly machinery (Bam), a multi-subunit complex that inserts proteins with beta-barrel topology into the outer membrane. BamB has been found to interact with BamA, which in turn binds and stabilizes pre-folded beta-barrel proteins; it has been suggested that BamB participates in the stabilization.
Pssm-ID: 199834 [Multi-domain] Cd Length: 358 Bit Score: 83.92 E-value: 1.05e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 98 LTALNSGDTSKVLWYVALAGGRRSVYSSSLIHSRG-VILCAIDNVLYGLDPSTGQVKWSSTLRN--FISGNLVLlneGQS 174
Cdd:cd10276 5 LPEPTPEFDPEVLWSKSVGNGGMAGIDLTPVVAGDmVYAADANGQVSAFNATTGKIIWETSLSGkgFLGGTPAV---GNG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 175 VAFM-TIDGYLCVFDVETGGLLWHREESSVQVRVKsdlsVAYSSGKHYVIVVlpDGRVLCLDSYSGDKMWESElrrrSMG 253
Cdd:cd10276 82 KIFVgTESGYLYALDAKDGSELWRTEVSDSQLLSP----PTYADGKIYVGTG--DGRLYYCNAETGKVVWNRT----STA 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 254 SIGSI--EITPVVAGSEVFVVDDSGALSSIDLETGKITWSEDLGVLSLSKEDEE-------------TLFVVTDTGELLA 318
Cdd:cd10276 152 PELSLrgGAAPVGAYDVVFVGDGNGTVVALNTGTGVDIWEFSVSEPRGRTELPRmidssvtyvvvggYLYSTSYQGYLVA 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 319 YDVDSKVRLWKlslGKFGKKKCLrwraPVMVSGKLWLLSMEGYLVGVNAFSGVIEESYMISGAQSLRYP-IKADASIYVA 397
Cdd:cd10276 232 LDFESGQFLWS---RKASGGTST----STDANGRVYVGDGEGSLYCLDASTGDELWSQTVLLGRVLSSPaIYVGVYIYVT 304
|
....*..
gi 499769786 398 AGKMGFV 404
Cdd:cd10276 305 DNAEGYL 311
|
|
| PA2928_fam |
NF041516 |
PA2928 family protein; This family is named for the locus PA2928 of Pseudomonas aeroginosa ... |
50-321 |
1.58e-05 |
|
PA2928 family protein; This family is named for the locus PA2928 of Pseudomonas aeroginosa PAO1, as the family member most frequently cited in the literature, although PA2928 itself is significantly shorter at the N-terminus than most other members of this family, and is probably non-functional. WP_017001489.1 represents an intact equivalent to the PA2928 pseudogene.
Pssm-ID: 469402 [Multi-domain] Cd Length: 345 Bit Score: 46.59 E-value: 1.58e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 50 GLFGRSSGSSDVD-GTFSKVKTIRGISTSLTIV----PGDVSDVIVTLDDQGRLTALNSgDTSKVLWYVALAGGRrsVYS 124
Cdd:NF041516 18 GGSYLAGPEPSIEaQSGAVFYTVDGRDVALVPYerfgANGMSNGITSGMSQFRLAAVDL-ATGEKLWDKKLSDEL--SWE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 125 SSLIHS--RGVILcAIDNVLYGLDPSTGQVKWSS----TLRNFISGNLV-------LLNEGQSVAFMTIDGylcvfdvet 191
Cdd:NF041516 95 AYLLGAtdRYLYV-ATDKGLYVLDLATGKVVADEkeleGLGPALKDNLSaaraayaYDDDNRALYFYGLDG--------- 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 192 ggLLWHREESSVQVRVKSD---------LSVAYSSGKHYVIV-------VLPDGRVLCLDSYSGDKMWESELRRRSMGSI 255
Cdd:NF041516 165 --RYYQIDLDTLTATPADPataptyaglLFAEEAAKGRPATFlsdkeeaALEDERVALRERPRGALYGGVLVRVGGDGDL 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 256 GSIE-------------ITPVVAGSEVFVV--------DDSGALSSIDLETGKITWSEDLGVLSLS-------------- 300
Cdd:NF041516 243 TPLGdtvfldggflldpTTLEGAADGHVLVvhkrtvndDANLLLSAVDLETGKVTWTLPLGYSSPSraftlpdgltllga 322
|
330 340
....*....|....*....|...
gi 499769786 301 --KEDEETLFVVTDTGELLAYDV 321
Cdd:NF041516 323 gnPEGGDLLKIDLKDGKLTRYDV 345
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| PQQ_2 |
pfam13360 |
PQQ-like domain; This domain contains several repeats of the PQQ repeat. |
94-329 |
1.74e-42 |
|
PQQ-like domain; This domain contains several repeats of the PQQ repeat.
Pssm-ID: 433144 [Multi-domain] Cd Length: 233 Bit Score: 149.09 E-value: 1.74e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 94 DQGRLTALNSgDTSKVLWYVALAGGRrsvySSSLIHSRGVILCA-IDNVLYGLDPSTGQVKWSSTLRNFISGNLvLLNEG 172
Cdd:pfam13360 1 ADGVVTALDA-ATGAELWRVDLETGL----GGGVAVDGGRLFVAtGGGQLVALDAATGKLLWRQTLSGEVLGAP-LVAGG 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 173 QSVAfMTIDGYLCVFDVETGGLLWHREESSVQVRVKSDLSVAYSSGkhYVIVVLPDGRVLCLDSYSGDKMWESEL----R 248
Cdd:pfam13360 75 RVFV-VAGDGSLIALDAADGRRLWSYQRSGEPLALRSSGSPAVVGD--TVVAGFSSGKLVALDPATGKVRWEAPLaaprG 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 249 RRSMGSIGSIEITPVVAGSEVFVVDDSGALSSIDLETGKITWSEDLGVLSLSKEDEETLFVVTDTGELLAYDVDSKVRLW 328
Cdd:pfam13360 152 TNELERLVDITGTPVVAGGRVFASAYQGRLVAFDAATGRRLWTREISGPNGPILDGDLLYVVSDDGELYALDRATGAVVW 231
|
.
gi 499769786 329 K 329
Cdd:pfam13360 232 K 232
|
|
| assembly_YfgL |
TIGR03300 |
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a ... |
78-362 |
1.50e-23 |
|
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274511 [Multi-domain] Cd Length: 377 Bit Score: 100.78 E-value: 1.50e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 78 LTIVPGDVSDVIVTLDDQGRLTALNsGDTSKVLWYVA----LAGGrrsVYSSSlihsRGVILCAIDNVLYGLDPSTGQVK 153
Cdd:TIGR03300 57 LRLQPAVAGGKVYAADADGTVAALD-AETGKRLWRVDlderLSGG---VGADG----GLVFVGTEKGEVIALDAEDGKEL 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 154 WSSTL------RNFISGNLVLLNegqsvafmTIDGYLCVFDVETGGLLWHREESSVQVRVKSDLSVAYSSGkhYVIVVLP 227
Cdd:TIGR03300 129 WRAKLssevlsPPLVANGLVVVR--------TNDGRLTALDAATGERLWTYSRVTPPLTLRGSASPVIADG--GVLVGFA 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 228 DGRVLCLDSYSGDKMWEselRRRSMGSiGSIEI--------TPVVAGSEVFVVDDSGALSSIDLETGKITWSEDLGVLSL 299
Cdd:TIGR03300 199 GGKLVALDLQTGQPLWE---QRVALPK-GRTELerlvdvdgDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASSYQG 274
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 499769786 300 SKEDEETLFVVTDTGELLAYDVDSKVRLWKLSLgkfgkkkcLRWR---APVMVSGKLWLLSMEGYL 362
Cdd:TIGR03300 275 PAVDDNRLYVTDADGVVVALDRRSGSELWKNDE--------LKYRqltAPAVLGGYLVVGDFEGYL 332
|
|
| PQQ |
COG1520 |
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell ... |
78-362 |
1.69e-23 |
|
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 441129 [Multi-domain] Cd Length: 370 Bit Score: 100.66 E-value: 1.69e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 78 LTIVPGDVSDVIVTLDDQGRLTALNsGDTSKVLWYVA----LAGGrrsVYSSSlihsRGVILCAIDNVLYGLDPSTGQVK 153
Cdd:COG1520 49 SRLAPAVAGDRVYAADADGRVAALD-AATGKELWRVDlgepLSGG---VGADG----GLVVVGTEDGEVIALDADDGEEL 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 154 WSSTLRN------FISGNLVLLNegqsvafmTIDGYLCVFDVETGGLLW--HREESSVQVRVKSdlSVAYSSGKhyVIVV 225
Cdd:COG1520 121 WRARLSSevlaapAVAGGRVVVR--------TGDGRVYALDAATGERLWsyQRPVPALTLRGTS--SPVIVGGA--VLVG 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 226 LPDGRVLCLDSYSGDKMWE---------SELRRrsmgsIGSIEITPVVAGSEVFVVDDSGALSSIDLETGKITWSEDLGV 296
Cdd:COG1520 189 FANGKLVALDLANGQPLWEqrvaqprgrTELER-----LVDVDGTPVVDGGVVYAVAYQGRLAALDLRSGRVLWSRDLSS 263
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 499769786 297 ---LSLskeDEETLFVVTDTGELLAYDVDSKVRLWKLSLgkfgkkkcLRWR---APVMVSGKLWLLSMEGYL 362
Cdd:COG1520 264 ytgLAV---DGNNLYVTDDDGRVWALDRRNGAELWKQDA--------LLYRgltAPVVLGDYVVVGDFEGYL 324
|
|
| PRK11138 |
PRK11138 |
outer membrane biogenesis protein BamB; Provisional |
87-398 |
1.59e-18 |
|
outer membrane biogenesis protein BamB; Provisional
Pssm-ID: 236857 [Multi-domain] Cd Length: 394 Bit Score: 86.52 E-value: 1.59e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 87 DVIVTLDDQGRLTALNSgDTSKVLWYVALAGGRRSVYSSSLIHSRGVILCAIDNV--------LYGLDPSTGQVKWSSTL 158
Cdd:PRK11138 70 NKVYAADRAGLVKALDA-DTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVyigsekgqVYALNAEDGEVAWQTKV 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 159 ------RNFISGNLVLLNegqsvafmTIDGYLCVFDVETGGLLWHREESSVQVRVKSDLSVAYSSGKhyVIVVLPDGRVL 232
Cdd:PRK11138 149 agealsRPVVSDGLVLVH--------TSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGG--AIVGGDNGRVS 218
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 233 CLDSYSGDKMWE---------SELRRrsmgsIGSIEITPVVAGSEVFVVDDSGALSSIDLETGKITWSEDLGVLSLSKED 303
Cdd:PRK11138 219 AVLMEQGQLIWQqrisqptgaTEIDR-----LVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGSVNDFAVD 293
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 304 EETLFVVTDTGELLAYDVDSKVRLWKLSLgkfgkkkcLRWR---APVMVSGKLWLLSMEGYLVGVNAFSGVIEESYMISG 380
Cdd:PRK11138 294 GGRIYLVDQNDRVYALDTRGGVELWSQSD--------LLHRlltAPVLYNGYLVVGDSEGYLHWINREDGRFVAQQKVDS 365
|
330
....*....|....*...
gi 499769786 381 AQSLRYPIKADASIYVAA 398
Cdd:PRK11138 366 SGFLSEPVVADDKLLIQA 383
|
|
| BamB_YfgL |
cd10276 |
Beta-barrel assembly machinery (Bam) complex component B and related proteins; BamB (YflG) is ... |
98-404 |
1.05e-17 |
|
Beta-barrel assembly machinery (Bam) complex component B and related proteins; BamB (YflG) is a non-essential component of the beta-barrel assembly machinery (Bam), a multi-subunit complex that inserts proteins with beta-barrel topology into the outer membrane. BamB has been found to interact with BamA, which in turn binds and stabilizes pre-folded beta-barrel proteins; it has been suggested that BamB participates in the stabilization.
Pssm-ID: 199834 [Multi-domain] Cd Length: 358 Bit Score: 83.92 E-value: 1.05e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 98 LTALNSGDTSKVLWYVALAGGRRSVYSSSLIHSRG-VILCAIDNVLYGLDPSTGQVKWSSTLRN--FISGNLVLlneGQS 174
Cdd:cd10276 5 LPEPTPEFDPEVLWSKSVGNGGMAGIDLTPVVAGDmVYAADANGQVSAFNATTGKIIWETSLSGkgFLGGTPAV---GNG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 175 VAFM-TIDGYLCVFDVETGGLLWHREESSVQVRVKsdlsVAYSSGKHYVIVVlpDGRVLCLDSYSGDKMWESElrrrSMG 253
Cdd:cd10276 82 KIFVgTESGYLYALDAKDGSELWRTEVSDSQLLSP----PTYADGKIYVGTG--DGRLYYCNAETGKVVWNRT----STA 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 254 SIGSI--EITPVVAGSEVFVVDDSGALSSIDLETGKITWSEDLGVLSLSKEDEE-------------TLFVVTDTGELLA 318
Cdd:cd10276 152 PELSLrgGAAPVGAYDVVFVGDGNGTVVALNTGTGVDIWEFSVSEPRGRTELPRmidssvtyvvvggYLYSTSYQGYLVA 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 319 YDVDSKVRLWKlslGKFGKKKCLrwraPVMVSGKLWLLSMEGYLVGVNAFSGVIEESYMISGAQSLRYP-IKADASIYVA 397
Cdd:cd10276 232 LDFESGQFLWS---RKASGGTST----STDANGRVYVGDGEGSLYCLDASTGDELWSQTVLLGRVLSSPaIYVGVYIYVT 304
|
....*..
gi 499769786 398 AGKMGFV 404
Cdd:cd10276 305 DNAEGYL 311
|
|
| PQQ |
COG1520 |
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell ... |
88-321 |
7.79e-16 |
|
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 441129 [Multi-domain] Cd Length: 370 Bit Score: 78.32 E-value: 7.79e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 88 VIVTLDdqGRLTALNSgDTSKVLWYVALAGgrrSVYSSSLIHSRGVILCAIDNVLYGLDPSTGQVKWSS-------TLRN 160
Cdd:COG1520 101 VVGTED--GEVIALDA-DDGEELWRARLSS---EVLAAPAVAGGRVVVRTGDGRVYALDAATGERLWSYqrpvpalTLRG 174
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 161 F----ISGNLVL------------LNEG-----QSVAF-----------------MTIDGYLCV---------FDVETGG 193
Cdd:COG1520 175 TsspvIVGGAVLvgfangklvaldLANGqplweQRVAQprgrtelerlvdvdgtpVVDGGVVYAvayqgrlaaLDLRSGR 254
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 194 LLWHREESSVQvrvksDLSVAYssgkHYVIVVLPDGRVLCLDSYSGDKMWESE-LRRRSMGSigsieitPVVAGSEVFVV 272
Cdd:COG1520 255 VLWSRDLSSYT-----GLAVDG----NNLYVTDDDGRVWALDRRNGAELWKQDaLLYRGLTA-------PVVLGDYVVVG 318
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 499769786 273 DDSGALSSIDLETGKItwsedLGVLSLSKE--------DEETLFVVTDTGELLAYDV 321
Cdd:COG1520 319 DFEGYLHWLSRDDGSL-----VARLRVDGSgiraapvvVGDTLYVQTRDGTLAALRL 370
|
|
| PQQ_2 |
pfam13360 |
PQQ-like domain; This domain contains several repeats of the PQQ repeat. |
181-396 |
1.98e-14 |
|
PQQ-like domain; This domain contains several repeats of the PQQ repeat.
Pssm-ID: 433144 [Multi-domain] Cd Length: 233 Bit Score: 72.05 E-value: 1.98e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 181 DGYLCVFDVETGGLLWhreessvQVRVKSDLS--VAYSSGkhYVIVVLPDGRVLCLDSYSGDKMWESELRrrsmgsiGSI 258
Cdd:pfam13360 2 DGVVTALDAATGAELW-------RVDLETGLGggVAVDGG--RLFVATGGGQLVALDAATGKLLWRQTLS-------GEV 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 259 EITPVVAGSEVFVVDDSGALSSIDLETGKITWSED-------LGVLSLSKEDEETLFVVTDTGELLAYDVDSKVRLWKLS 331
Cdd:pfam13360 66 LGAPLVAGGRVFVVAGDGSLIALDAADGRRLWSYQrsgeplaLRSSGSPAVVGDTVVAGFSSGKLVALDPATGKVRWEAP 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 332 LGK-FGKKKCLRWR----APVMVSGKLWLLSMEGYLVGVNAFSGVIEESYMISGAQSlryPIKADASIYV 396
Cdd:pfam13360 146 LAApRGTNELERLVditgTPVVAGGRVFASAYQGRLVAFDAATGRRLWTREISGPNG---PILDGDLLYV 212
|
|
| assembly_YfgL |
TIGR03300 |
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a ... |
96-320 |
6.48e-12 |
|
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274511 [Multi-domain] Cd Length: 377 Bit Score: 66.49 E-value: 6.48e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 96 GRLTALNSgDTSKVLWYVALAGgrrSVYSSSLIHSRGVILCAIDNVLYGLDPSTGQVKWSS-------TLRNF----ISG 164
Cdd:TIGR03300 115 GEVIALDA-EDGKELWRAKLSS---EVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYsrvtpplTLRGSaspvIAD 190
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 165 NLVL------------LNEG-----QSVAFMT----------IDG-------YLCV---------FDVETGGLLWHREES 201
Cdd:TIGR03300 191 GGVLvgfaggklvaldLQTGqplweQRVALPKgrtelerlvdVDGdpvvdggQVYAvsyqgrvaaLDLRSGRVLWKRDAS 270
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 202 SVQvrvksDLSVAYSsgkhYVIVVLPDGRVLCLDSYSGDKMWE-SELRRRSMGSigsieitPVVAGSEVFVVDDSGALSS 280
Cdd:TIGR03300 271 SYQ-----GPAVDDN----RLYVTDADGVVVALDRRSGSELWKnDELKYRQLTA-------PAVLGGYLVVGDFEGYLHW 334
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 499769786 281 IDLETGKI---TWSEDLGVLSLSKEDEETLFVVTDTGELLAYD 320
Cdd:TIGR03300 335 LDRDDGSFvarLKTDGSGIASPPVVVGDGLLVQTRDGDLYAFR 377
|
|
| PQQ_DH_like |
cd00216 |
PQQ-dependent dehydrogenases and related proteins; This family is composed of dehydrogenases ... |
82-391 |
6.09e-11 |
|
PQQ-dependent dehydrogenases and related proteins; This family is composed of dehydrogenases with pyrroloquinoline quinone (PQQ) as a cofactor, such as ethanol, methanol, and membrane-bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller, and the family also includes distantly related proteins which are not enzymatically active and do not bind PQQ.
Pssm-ID: 199833 [Multi-domain] Cd Length: 434 Bit Score: 63.78 E-value: 6.09e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 82 PGDVSDVIVTLDDQGRLTALNSgDTSKVLWYVALAGGRRSVYSSSLIHSRG-------VILCAIDNVLYGLDPSTGQVKW 154
Cdd:cd00216 27 PIVVDGVMYATTSFSRVFALDA-DDGKEIWSYDPALKDGWFEACCDLVNRGvavwggkVYIGVLDGRVYALNAETGKVAW 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 155 SS-----------TLRNFISGNLVLLneGQSVAFMTIDGYLCVFDVETGGLLWHR-----------EESSVQVRVKSDL- 211
Cdd:cd00216 106 KVknadvlggytaTSAPVVVDGLVII--GSSGDEFGVRGYLTAYDVATGEEKWRFylvmpdpnllpGKDSTVTDRNTPTg 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 212 --------------SVAYSSGKHYVIV------------------VLPDGRVLCLDSYSGDKMWESELRRRSmGSIGSIE 259
Cdd:cd00216 184 dehtwtsgggtgwsSAAYDAELNLIYVgggnptpwnwggnrtpgdNLYTSSIVAVNADTGEMKWQYQTTPHD-AWDYDGD 262
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 260 ITPVVA-----GSEVFVV---DDSGALSSIDLETGKITWSEDLGVLSLSKEDEetLFVVTDTGELLAYDVDSKVRLWKls 331
Cdd:cd00216 263 NTPVLAdikvkGKKVKVLfapAKNGNFYVLDRRNGELVSARPLVPDSYDPDRE--LFYVPANGRIMALDPVTGVVVWE-- 338
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 499769786 332 lgkfgKKKCLR-WRAPVMVSGKLWLL-SMEGYLVGVNAFSG-VIEESYMISGAQSlrYPIKAD 391
Cdd:cd00216 339 -----KSELHPlLGGPLSTAGNLVFVgTSDGYLKAYNADTGeKLWQQKVPSGFQA--EPVTYE 394
|
|
| PQQ_DH_like |
cd00216 |
PQQ-dependent dehydrogenases and related proteins; This family is composed of dehydrogenases ... |
88-396 |
6.07e-08 |
|
PQQ-dependent dehydrogenases and related proteins; This family is composed of dehydrogenases with pyrroloquinoline quinone (PQQ) as a cofactor, such as ethanol, methanol, and membrane-bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller, and the family also includes distantly related proteins which are not enzymatically active and do not bind PQQ.
Pssm-ID: 199833 [Multi-domain] Cd Length: 434 Bit Score: 54.54 E-value: 6.07e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 88 VIVTLDDqGRLTALNSgDTSKVLWYVALAGGRRSVYSSS---------LIHSRGVILcAIDNVLYGLDPSTGQVKWSstl 158
Cdd:cd00216 84 VYIGVLD-GRVYALNA-ETGKVAWKVKNADVLGGYTATSapvvvdglvIIGSSGDEF-GVRGYLTAYDVATGEEKWR--- 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 159 RNFISGNLVLLNEGQSVAFM----TIDGYLCVF----------------------------------------------- 187
Cdd:cd00216 158 FYLVMPDPNLLPGKDSTVTDrntpTGDEHTWTSgggtgwssaaydaelnliyvgggnptpwnwggnrtpgdnlytssiva 237
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 188 -DVETGGLLWHREES--------SVQVRVKSDLSVaysSGKHYVIVVLPD--GRVLCLDSYSGDKMWESELRRRSmgsig 256
Cdd:cd00216 238 vNADTGEMKWQYQTTphdawdydGDNTPVLADIKV---KGKKVKVLFAPAknGNFYVLDRRNGELVSARPLVPDS----- 309
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 257 sieitpVVAGSEVFVVDDSGALSSIDLETGKITWSEDL------GVLSLSKedeETLFVVTDTGELLAYDVDSKVRLWKL 330
Cdd:cd00216 310 ------YDPDRELFYVPANGRIMALDPVTGVVVWEKSElhpllgGPLSTAG---NLVFVGTSDGYLKAYNADTGEKLWQQ 380
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 499769786 331 SLGKFGKKKCLRWRapvmVSGKLWLLSMEGYLVGVNAFsgvieesymiSGAQSLRYPIKADASIYV 396
Cdd:cd00216 381 KVPSGFQAEPVTYE----VDGEQYVLIQAGGGGAFPLW----------GGMADLTRGTQMGGTVVV 432
|
|
| PA2928_fam |
NF041516 |
PA2928 family protein; This family is named for the locus PA2928 of Pseudomonas aeroginosa ... |
50-321 |
1.58e-05 |
|
PA2928 family protein; This family is named for the locus PA2928 of Pseudomonas aeroginosa PAO1, as the family member most frequently cited in the literature, although PA2928 itself is significantly shorter at the N-terminus than most other members of this family, and is probably non-functional. WP_017001489.1 represents an intact equivalent to the PA2928 pseudogene.
Pssm-ID: 469402 [Multi-domain] Cd Length: 345 Bit Score: 46.59 E-value: 1.58e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 50 GLFGRSSGSSDVD-GTFSKVKTIRGISTSLTIV----PGDVSDVIVTLDDQGRLTALNSgDTSKVLWYVALAGGRrsVYS 124
Cdd:NF041516 18 GGSYLAGPEPSIEaQSGAVFYTVDGRDVALVPYerfgANGMSNGITSGMSQFRLAAVDL-ATGEKLWDKKLSDEL--SWE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 125 SSLIHS--RGVILcAIDNVLYGLDPSTGQVKWSS----TLRNFISGNLV-------LLNEGQSVAFMTIDGylcvfdvet 191
Cdd:NF041516 95 AYLLGAtdRYLYV-ATDKGLYVLDLATGKVVADEkeleGLGPALKDNLSaaraayaYDDDNRALYFYGLDG--------- 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 192 ggLLWHREESSVQVRVKSD---------LSVAYSSGKHYVIV-------VLPDGRVLCLDSYSGDKMWESELRRRSMGSI 255
Cdd:NF041516 165 --RYYQIDLDTLTATPADPataptyaglLFAEEAAKGRPATFlsdkeeaALEDERVALRERPRGALYGGVLVRVGGDGDL 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 256 GSIE-------------ITPVVAGSEVFVV--------DDSGALSSIDLETGKITWSEDLGVLSLS-------------- 300
Cdd:NF041516 243 TPLGdtvfldggflldpTTLEGAADGHVLVvhkrtvndDANLLLSAVDLETGKVTWTLPLGYSSPSraftlpdgltllga 322
|
330 340
....*....|....*....|...
gi 499769786 301 --KEDEETLFVVTDTGELLAYDV 321
Cdd:NF041516 323 gnPEGGDLLKIDLKDGKLTRYDV 345
|
|
| Gcd |
COG4993 |
Glucose dehydrogenase, PQQ-dependent [Carbohydrate transport and metabolism]; |
96-198 |
1.09e-03 |
|
Glucose dehydrogenase, PQQ-dependent [Carbohydrate transport and metabolism];
Pssm-ID: 444017 [Multi-domain] Cd Length: 515 Bit Score: 40.91 E-value: 1.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 96 GRLTALNsGDTSKVLW-YVALAGGRRSVYSSSlihSRGV-------ILCAIDNVLYGLDPSTGQVKWSSTLRN------- 160
Cdd:COG4993 65 NRVFALD-AATGKELWrYDPKLPDDAACCDVV---NRGVayydgriFLGTLDGRLVALDAKTGKVCWDVKVGDpkkgyti 140
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 499769786 161 ----FISGNLVLLneGQSVAFMTIDGYLCVFDVETGGLLWHR 198
Cdd:COG4993 141 tsapLVVKDKVIV--GGSGGEFGPRGVVRAYDARTGKLVWRF 180
|
|
| PQQ_ADH_I |
cd10277 |
Ethanol dehydrogenase, a bacterial quinoprotein (PQQ-dependent type I alcohol dehydrogenase); ... |
170-291 |
1.63e-03 |
|
Ethanol dehydrogenase, a bacterial quinoprotein (PQQ-dependent type I alcohol dehydrogenase); This bacterial family of homodimeric ethanol dehydrogenases utilize pyrroloquinoline quinone (PQQ) as a cofactor. It represents proteins whose expression may be induced by ethanol, and which are similar to quinoprotein methanol dehydrogenases, but have higher specificities for ethanol and other primary and secondary alcohols. Dehydrogenases with PQQ cofactors, such as ethanol, methanol, and membrane-bound glucose dehydrogenases, form an 8-bladed beta-propeller.
Pssm-ID: 199835 [Multi-domain] Cd Length: 529 Bit Score: 40.36 E-value: 1.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 170 NEGQSVAFMTIDGYLCV---------FDVETGGLLW---HR--EESSVQVRVKSDlSVAYSSGKhyVIVVLPDGRVLCLD 235
Cdd:cd10277 49 QRGQESQPIVNDGVMYVttsynrvfaIDAKTGKELWkykHRlpEDIRPCCDVVNR-GVALYGDK--VYFGTLDAHLVALD 125
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 499769786 236 SYSGDKMWeselrRRSMGSIG---SIEITPVVAGSEVfVVDDSGA-------LSSIDLETGKITWS 291
Cdd:cd10277 126 AKTGKVVW-----KKKVADYKagySMTLAPLVVKGKV-IVGVSGGefgvrgfIAALDAETGKEVWR 185
|
|
| PQQ_2 |
pfam13360 |
PQQ-like domain; This domain contains several repeats of the PQQ repeat. |
274-372 |
3.69e-03 |
|
PQQ-like domain; This domain contains several repeats of the PQQ repeat.
Pssm-ID: 433144 [Multi-domain] Cd Length: 233 Bit Score: 38.54 E-value: 3.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 274 DSGALSSIDLETGKITWSEDLGVLSLS--KEDEETLFVVTDTGELLAYDVDSKVRLWKLSLGKFGKKkclrwrAPVMVSG 351
Cdd:pfam13360 1 ADGVVTALDAATGAELWRVDLETGLGGgvAVDGGRLFVATGGGQLVALDAATGKLLWRQTLSGEVLG------APLVAGG 74
|
90 100
....*....|....*....|.
gi 499769786 352 KLWLLSMEGYLVGVNAFSGVI 372
Cdd:pfam13360 75 RVFVVAGDGSLIALDAADGRR 95
|
|
| PQQ_DH_like |
cd00216 |
PQQ-dependent dehydrogenases and related proteins; This family is composed of dehydrogenases ... |
170-295 |
4.01e-03 |
|
PQQ-dependent dehydrogenases and related proteins; This family is composed of dehydrogenases with pyrroloquinoline quinone (PQQ) as a cofactor, such as ethanol, methanol, and membrane-bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller, and the family also includes distantly related proteins which are not enzymatically active and do not bind PQQ.
Pssm-ID: 199833 [Multi-domain] Cd Length: 434 Bit Score: 39.13 E-value: 4.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 170 NEGQSVAFMTIDG--YLC-----VF--DVETGGLLWH--REESSVQVRVKSDL---SVAYSSGKHYVIVVlpDGRVLCLD 235
Cdd:cd00216 20 NRGSELTPIVVDGvmYATtsfsrVFalDADDGKEIWSydPALKDGWFEACCDLvnrGVAVWGGKVYIGVL--DGRVYALN 97
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 499769786 236 SYSGDKMWESELRrrSMGSIGSIEITP------VVAGSEVFVVDDSGALSSIDLETGKITWSEDLG 295
Cdd:cd00216 98 AETGKVAWKVKNA--DVLGGYTATSAPvvvdglVIIGSSGDEFGVRGYLTAYDVATGEEKWRFYLV 161
|
|
| PQQ_MDH |
cd10278 |
Large subunit of methanol dehydrogenase (moxF); Methanol dehydrogenase is a key enzyme in the ... |
213-290 |
5.02e-03 |
|
Large subunit of methanol dehydrogenase (moxF); Methanol dehydrogenase is a key enzyme in the utilization of C1 compounds as a source of energy and carbon by bacteria. It catalyzes the oxidation of methanol to formaldehyde, transfering two electrons per methanol to cytochrome c(L) as the acceptor. Methanol dehydrogenase belongs to a family of dehydrogenases with pyrroloquinoline quinone (PQQ) as cofactor, which also includes dehydrogenases specific to other alcohols and membrane-bound glucose dehydrogenases. This alignment model for the large subunit contains an 8-bladed beta-propeller; the functional enzyme forms a heterotetramer composed of two large and two small subunits.
Pssm-ID: 199836 [Multi-domain] Cd Length: 553 Bit Score: 38.85 E-value: 5.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 213 VAYSSGKhyVIVVLPDGRVLCLDSYSGDKMWESELRRRSMGSigSIEITPVVAGSEVfVVDDSGA-------LSSIDLET 285
Cdd:cd10278 98 LAYADGK--IFFNQLDGHLVALDAKTGKEVWKVKNGDPKVGE--TLTMAPLVVKDKV-IVGISGGefgvrgyVTAYDLKT 172
|
....*
gi 499769786 286 GKITW 290
Cdd:cd10278 173 GKLVW 177
|
|
| PRK11138 |
PRK11138 |
outer membrane biogenesis protein BamB; Provisional |
260-329 |
5.30e-03 |
|
outer membrane biogenesis protein BamB; Provisional
Pssm-ID: 236857 [Multi-domain] Cd Length: 394 Bit Score: 38.76 E-value: 5.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499769786 260 ITPVVAGSEVFVVDDSGALSSIDLETGKITWSEDL----GVLSLSKE---------DEETLFVVTDTGELLAYDVDSKVR 326
Cdd:PRK11138 63 LHPAVAYNKVYAADRAGLVKALDADTGKEIWSVDLsekdGWFSKNKSallsggvtvAGGKVYIGSEKGQVYALNAEDGEV 142
|
...
gi 499769786 327 LWK 329
Cdd:PRK11138 143 AWQ 145
|
|
|