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Conserved domains on  [gi|499386996|ref|WP_011074463|]
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NadS family protein [Shewanella oneidensis]

Protein Classification

helix-turn-helix domain-containing protein( domain architecture ID 709729)

helix-turn-helix (HTH) domain-containing protein with an XRE (Xenobiotic Response Element) family HTH domain, binds DNA and may function as a transcriptional regulator

CATH:  1.10.10.10
Gene Ontology:  GO:0003677
PubMed:  15808743|2644244|8831795
SCOP:  4000362

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NadS super family cl49308
NadS family protein;
1-84 5.48e-35

NadS family protein;


The actual alignment was detected with superfamily member NF041265:

Pssm-ID: 469165  Cd Length: 94  Bit Score: 114.12  E-value: 5.48e-35
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499386996  1 MSIFNELQASLEEAVEIHHGLKKPARVTRYEVADVKSIREDlLKVTQAEFAATMGVSVDTIrgstpeppkfPSWGCKRK- 79
Cdd:NF041265  1 MSFFDELKASLEEAVEIKNGVKAPARVTRYEVADVKAIRAQ-LNVSQAEMAKALGTSVDTI----------KSWESKRRn 69


                ....*....
gi 499386996 80 ----TAKIL 84
Cdd:NF041265 70 ptglAAKVL 78
 
Name Accession Description Interval E-value
NadS NF041265
NadS family protein;
1-84 5.48e-35

NadS family protein;


Pssm-ID: 469165  Cd Length: 94  Bit Score: 114.12  E-value: 5.48e-35
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499386996  1 MSIFNELQASLEEAVEIHHGLKKPARVTRYEVADVKSIREDlLKVTQAEFAATMGVSVDTIrgstpeppkfPSWGCKRK- 79
Cdd:NF041265  1 MSFFDELKASLEEAVEIKNGVKAPARVTRYEVADVKAIRAQ-LNVSQAEMAKALGTSVDTI----------KSWESKRRn 69


                ....*....
gi 499386996 80 ----TAKIL 84
Cdd:NF041265 70 ptglAAKVL 78
YiaG COG2944
DNA-binding transcriptional regulator YiaG, XRE-type HTH domain [Transcription];
28-62 6.65e-06

DNA-binding transcriptional regulator YiaG, XRE-type HTH domain [Transcription];


Pssm-ID: 442187 [Multi-domain]  Cd Length: 64  Bit Score: 39.53  E-value: 6.65e-06
                        10        20        30
                ....*....|....*....|....*....|....*
gi 499386996 28 TRYEVADVKSIREDLlKVTQAEFAATMGVSVDTIR 62
Cdd:COG2944   4 KPLTPEEIRALRERL-GLSQAEFAALLGVSVSTVR 37
 
Name Accession Description Interval E-value
NadS NF041265
NadS family protein;
1-84 5.48e-35

NadS family protein;


Pssm-ID: 469165  Cd Length: 94  Bit Score: 114.12  E-value: 5.48e-35
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 499386996  1 MSIFNELQASLEEAVEIHHGLKKPARVTRYEVADVKSIREDlLKVTQAEFAATMGVSVDTIrgstpeppkfPSWGCKRK- 79
Cdd:NF041265  1 MSFFDELKASLEEAVEIKNGVKAPARVTRYEVADVKAIRAQ-LNVSQAEMAKALGTSVDTI----------KSWESKRRn 69


                ....*....
gi 499386996 80 ----TAKIL 84
Cdd:NF041265 70 ptglAAKVL 78
YiaG COG2944
DNA-binding transcriptional regulator YiaG, XRE-type HTH domain [Transcription];
28-62 6.65e-06

DNA-binding transcriptional regulator YiaG, XRE-type HTH domain [Transcription];


Pssm-ID: 442187 [Multi-domain]  Cd Length: 64  Bit Score: 39.53  E-value: 6.65e-06
                        10        20        30
                ....*....|....*....|....*....|....*
gi 499386996 28 TRYEVADVKSIREDLlKVTQAEFAATMGVSVDTIR 62
Cdd:COG2944   4 KPLTPEEIRALRERL-GLSQAEFAALLGVSVSTVR 37
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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