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Conserved domains on  [gi|498531434|ref|WP_010830229|]
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MULTISPECIES: single-stranded DNA-binding protein [Bacilli]

Protein Classification

single-stranded DNA-binding protein( domain architecture ID 11427956)

single-stranded DNA (ssDNA)-binding protein plays a key role in DNA replication, recombination, and repair

CATH:  2.40.50.140
Gene Ontology:  GO:0003697|GO:0006260
PubMed:  12598368|8458342|27838363
SCOP:  4000346

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ssb COG0629
Single-stranded DNA-binding protein [Replication, recombination and repair];
1-106 1.58e-40

Single-stranded DNA-binding protein [Replication, recombination and repair];


:

Pssm-ID: 440394  Cd Length: 116  Bit Score: 131.11  E-value: 1.58e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498531434   1 MIKTSAVGRLTKSSELRVTSTGKAVANFALACKRERLDKDGNAQ--TTFIQCVIWGKPAEVLAKYTQKGSLIAVNGELQS 78
Cdd:COG0629    1 MNKVTLVGRLGKDPELRYTPSGTAVANFRLAVNRRYKDQDGEWKdeTDWHRVVAWGKLAENAAEYLKKGDKVYVEGRLRT 80

                         90       100
                 ....*....|....*....|....*...
gi 498531434  79 RSYDDQQGQTHYVTELVVAGFEFLESKE 106
Cdd:COG0629   81 RSWEDKDGQKRYTTEVVADEIQFLGSRP 108
 
Name Accession Description Interval E-value
Ssb COG0629
Single-stranded DNA-binding protein [Replication, recombination and repair];
1-106 1.58e-40

Single-stranded DNA-binding protein [Replication, recombination and repair];


Pssm-ID: 440394  Cd Length: 116  Bit Score: 131.11  E-value: 1.58e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498531434   1 MIKTSAVGRLTKSSELRVTSTGKAVANFALACKRERLDKDGNAQ--TTFIQCVIWGKPAEVLAKYTQKGSLIAVNGELQS 78
Cdd:COG0629    1 MNKVTLVGRLGKDPELRYTPSGTAVANFRLAVNRRYKDQDGEWKdeTDWHRVVAWGKLAENAAEYLKKGDKVYVEGRLRT 80

                         90       100
                 ....*....|....*....|....*...
gi 498531434  79 RSYDDQQGQTHYVTELVVAGFEFLESKE 106
Cdd:COG0629   81 RSWEDKDGQKRYTTEVVADEIQFLGSRP 108
SSB pfam00436
Single-strand binding protein family; This family includes single stranded binding proteins ...
 1-102 2.84e-35

Single-strand binding protein family; This family includes single stranded binding proteins and also the primosomal replication protein N (PriB). PriB forms a complex with PriA, PriC and ssDNA.


Pssm-ID: 425680  Cd Length: 103  Bit Score: 117.34  E-value: 2.84e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498531434    1 MIKTSAVGRLTKSSELRVTSTGKAVANFALACKRERLDK-DGNAQTTFIQCVIWGKPAEVLAKYTQKGSLIAVNGELQSR 79
Cdd:pfam00436   1 MNKVILVGRLTRDPELRYTPNGNAVANFTLATNRRFKDRgEGDEETDFHRVVVFGKLAEVAAQYLKKGSLVYVEGRLQTR 80

                          90       100
                  ....*....|....*....|...
gi 498531434   80 SYDDQQGQTHYVTELVVAGFEFL 102
Cdd:pfam00436  81 KYEDQEGQKRYVTEIVADEVQFL 103
SSB_OBF cd04496
SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs ...
 7-102 2.16e-34

SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart at forks that have stalled at sites of DNA damage. It also plays a role in the assembly of primosome during replication initiation at the bacteriophage phiX174 origin. PriB physically interacts with SSB and binds ssDNA with high affinity.


Pssm-ID: 239942  Cd Length: 100  Bit Score: 115.02  E-value: 2.16e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498531434   7 VGRLTKSSELRVTSTGKAVANFALACKRERLDKD-GNAQTTFIQCVIWGKPAEVLAKYTQKGSLIAVNGELQSRSYDDQQ 85
Cdd:cd04496    4 IGRLGKDPELRYTPSGTPVARFSLAVNRRRKDRDeEEEETDWIRVVAFGKLAENAAKYLKKGDLVYVEGRLRTRSWEDKD 83

                         90
                 ....*....|....*..
gi 498531434  86 GQTHYVTELVVAGFEFL 102
Cdd:cd04496   84 GQKRYGTEVVADRIEFL 100
PRK07275 PRK07275
single-stranded DNA-binding protein; Provisional
 7-107 2.34e-34

single-stranded DNA-binding protein; Provisional


Pssm-ID: 180915 [Multi-domain]  Cd Length: 162  Bit Score: 117.30  E-value: 2.34e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498531434   7 VGRLTKSSELRVTSTGKAVANFALACKRERLDKDGNAQTTFIQCVIWGKPAEVLAKYTQKGSLIAVNGELQSRSYDDQQG 86
Cdd:PRK07275   8 VGRMTRDAELRYTPSNVAVATFTLAVNRTFKSQNGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTRNYENQQG 87

                         90       100
                 ....*....|....*....|.
gi 498531434  87 QTHYVTELVVAGFEFLESKET 107
Cdd:PRK07275  88 QRVYVTEVVADNFQMLESRAT 108
ssb TIGR00621
single stranded DNA-binding protein (ssb); All proteins in this family for which functions are ...
 7-130 8.04e-32

single stranded DNA-binding protein (ssb); All proteins in this family for which functions are known are single-stranded DNA binding proteins that function in many processes including transcription, repair, replication and recombination. Members encoded between genes for ribosomal proteins S6 and S18 should be annotated as primosomal protein N (PriB). Forms in gamma-protoeobacteria are much shorter and poorly recognized by this model. Additional members of this family include phage proteins. Eukaryotic members are organellar proteins. [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273179 [Multi-domain]  Cd Length: 164  Bit Score: 110.59  E-value: 8.04e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498531434    7 VGRLTKSSELRVTSTGKAVANFALACKRERLDKDGNAQ--TTFIQCVIWGKPAEVLAKYTQKGSLIAVNGELQSRSYDDQ 84
Cdd:TIGR00621  10 VGRLTRDPELRYTPSGNAVANFTLATNRRWKDQDGEWKeeTEWHDIVIFGRLAEVAAQYLKKGSLVYVEGRLRTRKWEDQ 89

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 498531434   85 QGQTHYVTELVVAGFEFLESKETVQNREQKQQMPEIANAePFYGMD 130
Cdd:TIGR00621  90 NGQKRSKTEIIADNVQLLDLLGARAQGGEFSGGGGSGNR-PQGGQE 134
 
Name Accession Description Interval E-value
Ssb COG0629
Single-stranded DNA-binding protein [Replication, recombination and repair];
1-106 1.58e-40

Single-stranded DNA-binding protein [Replication, recombination and repair];


Pssm-ID: 440394  Cd Length: 116  Bit Score: 131.11  E-value: 1.58e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498531434   1 MIKTSAVGRLTKSSELRVTSTGKAVANFALACKRERLDKDGNAQ--TTFIQCVIWGKPAEVLAKYTQKGSLIAVNGELQS 78
Cdd:COG0629    1 MNKVTLVGRLGKDPELRYTPSGTAVANFRLAVNRRYKDQDGEWKdeTDWHRVVAWGKLAENAAEYLKKGDKVYVEGRLRT 80

                         90       100
                 ....*....|....*....|....*...
gi 498531434  79 RSYDDQQGQTHYVTELVVAGFEFLESKE 106
Cdd:COG0629   81 RSWEDKDGQKRYTTEVVADEIQFLGSRP 108
SSB pfam00436
Single-strand binding protein family; This family includes single stranded binding proteins ...
 1-102 2.84e-35

Single-strand binding protein family; This family includes single stranded binding proteins and also the primosomal replication protein N (PriB). PriB forms a complex with PriA, PriC and ssDNA.


Pssm-ID: 425680  Cd Length: 103  Bit Score: 117.34  E-value: 2.84e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498531434    1 MIKTSAVGRLTKSSELRVTSTGKAVANFALACKRERLDK-DGNAQTTFIQCVIWGKPAEVLAKYTQKGSLIAVNGELQSR 79
Cdd:pfam00436   1 MNKVILVGRLTRDPELRYTPNGNAVANFTLATNRRFKDRgEGDEETDFHRVVVFGKLAEVAAQYLKKGSLVYVEGRLQTR 80

                          90       100
                  ....*....|....*....|...
gi 498531434   80 SYDDQQGQTHYVTELVVAGFEFL 102
Cdd:pfam00436  81 KYEDQEGQKRYVTEIVADEVQFL 103
SSB_OBF cd04496
SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs ...
 7-102 2.16e-34

SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart at forks that have stalled at sites of DNA damage. It also plays a role in the assembly of primosome during replication initiation at the bacteriophage phiX174 origin. PriB physically interacts with SSB and binds ssDNA with high affinity.


Pssm-ID: 239942  Cd Length: 100  Bit Score: 115.02  E-value: 2.16e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498531434   7 VGRLTKSSELRVTSTGKAVANFALACKRERLDKD-GNAQTTFIQCVIWGKPAEVLAKYTQKGSLIAVNGELQSRSYDDQQ 85
Cdd:cd04496    4 IGRLGKDPELRYTPSGTPVARFSLAVNRRRKDRDeEEEETDWIRVVAFGKLAENAAKYLKKGDLVYVEGRLRTRSWEDKD 83

                         90
                 ....*....|....*..
gi 498531434  86 GQTHYVTELVVAGFEFL 102
Cdd:cd04496   84 GQKRYGTEVVADRIEFL 100
PRK07275 PRK07275
single-stranded DNA-binding protein; Provisional
 7-107 2.34e-34

single-stranded DNA-binding protein; Provisional


Pssm-ID: 180915 [Multi-domain]  Cd Length: 162  Bit Score: 117.30  E-value: 2.34e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498531434   7 VGRLTKSSELRVTSTGKAVANFALACKRERLDKDGNAQTTFIQCVIWGKPAEVLAKYTQKGSLIAVNGELQSRSYDDQQG 86
Cdd:PRK07275   8 VGRMTRDAELRYTPSNVAVATFTLAVNRTFKSQNGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTRNYENQQG 87

                         90       100
                 ....*....|....*....|.
gi 498531434  87 QTHYVTELVVAGFEFLESKET 107
Cdd:PRK07275  88 QRVYVTEVVADNFQMLESRAT 108
PRK07274 PRK07274
single-stranded DNA-binding protein; Provisional
 1-112 4.04e-32

single-stranded DNA-binding protein; Provisional


Pssm-ID: 180914  Cd Length: 131  Bit Score: 110.62  E-value: 4.04e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498531434   1 MIKTSAVGRLTKSSELRVTSTGKAVANFALACKRERLDKDGNAQTTFIQCVIWGKPAEVLAKYTQKGSLIAVNGELQSRS 80
Cdd:PRK07274   2 YNKVILIGRLTATPELVKTANDKSVARVTLAVNRRFKNQNGEREADFINVVLWGKLAETLASYASKGSLISIDGELRTRK 81

                         90       100       110
                 ....*....|....*....|....*....|..
gi 498531434  81 YdDQQGQTHYVTELVVAGFEFLESKETVQNRE 112
Cdd:PRK07274  82 Y-EKDGQTHYVTEVLCQSFQLLESRAQRAMRE 112
ssb TIGR00621
single stranded DNA-binding protein (ssb); All proteins in this family for which functions are ...
 7-130 8.04e-32

single stranded DNA-binding protein (ssb); All proteins in this family for which functions are known are single-stranded DNA binding proteins that function in many processes including transcription, repair, replication and recombination. Members encoded between genes for ribosomal proteins S6 and S18 should be annotated as primosomal protein N (PriB). Forms in gamma-protoeobacteria are much shorter and poorly recognized by this model. Additional members of this family include phage proteins. Eukaryotic members are organellar proteins. [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273179 [Multi-domain]  Cd Length: 164  Bit Score: 110.59  E-value: 8.04e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498531434    7 VGRLTKSSELRVTSTGKAVANFALACKRERLDKDGNAQ--TTFIQCVIWGKPAEVLAKYTQKGSLIAVNGELQSRSYDDQ 84
Cdd:TIGR00621  10 VGRLTRDPELRYTPSGNAVANFTLATNRRWKDQDGEWKeeTEWHDIVIFGRLAEVAAQYLKKGSLVYVEGRLRTRKWEDQ 89

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 498531434   85 QGQTHYVTELVVAGFEFLESKETVQNREQKQQMPEIANAePFYGMD 130
Cdd:TIGR00621  90 NGQKRSKTEIIADNVQLLDLLGARAQGGEFSGGGGSGNR-PQGGQE 134
PRK06751 PRK06751
single-stranded DNA-binding protein; Provisional
 1-105 8.12e-27

single-stranded DNA-binding protein; Provisional


Pssm-ID: 168659 [Multi-domain]  Cd Length: 173  Bit Score: 98.33  E-value: 8.12e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498531434   1 MIKTSAVGRLTKSSELRVTSTGKAVANFALACKRERLDKDGNAQTTFIQCVIWGKPAEVLAKYTQKGSLIAVNGELQSRS 80
Cdd:PRK06751   2 MNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTRN 81

                         90       100
                 ....*....|....*....|....*
gi 498531434  81 YDDQQGQTHYVTELVVAGFEFLESK 105
Cdd:PRK06751  82 YEGQDGKRVYVTEVLAESVQFLEPR 106
PRK06752 PRK06752
single-stranded DNA-binding protein; Validated
 1-110 2.53e-25

single-stranded DNA-binding protein; Validated


Pssm-ID: 168660  Cd Length: 112  Bit Score: 92.79  E-value: 2.53e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498531434   1 MIKTSAVGRLTKSSELRVTSTGKAVANFALACKRERLDKDGNAQTTFIQCVIWGKPAEVLAKYTQKGSLIAVNGELQSRS 80
Cdd:PRK06752   2 MNRVVLIGRLTKEPELYYTKQGVAYARVCVAVNRGFRNSLGEQQVDFINCVVWRKSAENVTEYCTKGSLVGITGRIHTRN 81

                         90       100       110
                 ....*....|....*....|....*....|
gi 498531434  81 YDDQQGQTHYVTELVVAGFEFLESKETVQN 110
Cdd:PRK06752  82 YEDDQGKRIYITEVVIESITFLERRREGAS 111
PRK07772 PRK07772
single-stranded DNA-binding protein; Provisional
 7-96 1.47e-17

single-stranded DNA-binding protein; Provisional


Pssm-ID: 236092 [Multi-domain]  Cd Length: 186  Bit Score: 74.69  E-value: 1.47e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498531434   7 VGRLTKSSELRVTSTGKAVANFALACKRERLD------KDGNAqtTFIQCVIWGKPAEVLAKYTQKGSLIAVNGELQSRS 80
Cdd:PRK07772  10 VGNLTADPELRFTPSGAAVANFTVASTPRTFDrqtnewKDGEA--LFLRCSIWRQAAENVAESLTKGMRVIVTGRLKQRS 87

                         90
                 ....*....|....*.
gi 498531434  81 YDDQQGQTHYVTELVV 96
Cdd:PRK07772  88 YETREGEKRTVVELEV 103
PRK13732 PRK13732
single-stranded DNA-binding protein; Provisional
 3-116 2.60e-16

single-stranded DNA-binding protein; Provisional


Pssm-ID: 184284 [Multi-domain]  Cd Length: 175  Bit Score: 71.30  E-value: 2.60e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498531434   3 KTSAVGRLTKSSELRVTSTGKAVANFALACKRERLDK---DGNAQTTFIQCVIWGKPAEVLAKYTQKGSLIAVNGELQSR 79
Cdd:PRK13732   8 KVILVGRLGKDPEVRYIPNGGAVANLQVATSESWRDKqtgEMREQTEWHRVVLFGKLAEVAGEYLRKGAQVYIEGQLRTR 87

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 498531434  80 SYDDqQGQTHYVTELVV---AGFEFLESKETVQNREQKQQ 116
Cdd:PRK13732  88 SWED-NGITRYVTEILVkttGTMQMLGRAPQQNAQPQPGP 126
PRK09010 PRK09010
single-stranded DNA-binding protein; Provisional
 3-96 1.35e-15

single-stranded DNA-binding protein; Provisional


Pssm-ID: 236362 [Multi-domain]  Cd Length: 177  Bit Score: 69.11  E-value: 1.35e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498531434   3 KTSAVGRLTKSSELRVTSTGKAVANFALACKRERLDK---DGNAQTTFIQCVIWGKPAEVLAKYTQKGSLIAVNGELQSR 79
Cdd:PRK09010   8 KVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKqtgEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYIEGQLRTR 87

                         90
                 ....*....|....*..
gi 498531434  80 SYDDQQGQTHYVTELVV 96
Cdd:PRK09010  88 KWTDQSGQDRYTTEVVV 104
PRK06642 PRK06642
single-stranded DNA-binding protein; Provisional
 3-125 4.24e-15

single-stranded DNA-binding protein; Provisional


Pssm-ID: 135984  Cd Length: 152  Bit Score: 67.44  E-value: 4.24e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498531434   3 KTSAVGRLTKSSELRVTSTGKAVANFALACK---RERLDKDGNAQTTFIQCVIWGKP-AEVLAKYTQKGSLIAVNGELQS 78
Cdd:PRK06642   7 KVILIGNVGRDPEIRTTGEGKKIINLSLATTetwKDRITSERKERTEWHRVVIFSEGlVSVVERYVTKGSKLYIEGSLQT 86

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 498531434  79 RSYDDQQGQTHYVTELVVAGFE----FLESKETvQNREQKQQMPEIANAEP 125
Cdd:PRK06642  87 RKWNDNSGQEKYTTEVVLQNFNsqliLLDSKNS-NNHNQDSGHSEYKHPET 136
PRK08486 PRK08486
single-stranded DNA-binding protein; Provisional
 7-129 5.45e-15

single-stranded DNA-binding protein; Provisional


Pssm-ID: 236275 [Multi-domain]  Cd Length: 182  Bit Score: 67.95  E-value: 5.45e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498531434   7 VGRLTKSSELRVTSTGKAVANFALACKRERLDKDGNA--QTTFIQCVIWGKPAEVLAKYTQKGSLIAVNGELQSRSYDDQ 84
Cdd:PRK08486   8 VGNLTRDVELRYLPSGSAIATIGLATSRRFKKQDGEKgeEVCFIDIRLFGRTAEIANQYLSKGSKVLIEGRLTFESWMDQ 87

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 498531434  85 QGQTHYVTELVVAGFEFLESKETVQNREQKQQMPEIANAEPFYGM 129
Cdd:PRK08486  88 NGQKRSKHTITAESMQMLDSKSDNPQANAMQDNSFHENFNNNYPG 132
PRK06863 PRK06863
single-stranded DNA-binding protein; Provisional
 3-94 7.13e-14

single-stranded DNA-binding protein; Provisional


Pssm-ID: 136097 [Multi-domain]  Cd Length: 168  Bit Score: 64.60  E-value: 7.13e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498531434   3 KTSAVGRLTKSSELRVTSTGKAVANFALACKRERLDKDGNAQ---TTFIQCVIWGKPAEVLAKYTQKGSLIAVNGELQSR 79
Cdd:PRK06863   6 KVIIVGHLGNDPEIRTMPNGEAVANISVATSESWTDKNTGERrevTEWHRIVFYRRQAEVAGEYLRKGSQVYVEGRLKTR 85

                         90
                 ....*....|....*
gi 498531434  80 SYDDQQGQTHYVTEL 94
Cdd:PRK06863  86 KWQDQNGQDRYTTEI 100
PRK08763 PRK08763
single-stranded DNA-binding protein; Provisional
 3-105 5.81e-13

single-stranded DNA-binding protein; Provisional


Pssm-ID: 181549 [Multi-domain]  Cd Length: 164  Bit Score: 62.26  E-value: 5.81e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498531434   3 KTSAVGRLTKSSELRVTSTGKAVANFALACKRERLDKDGNAQ--TTFIQCVIWGKPAEVLAKYTQKGSLIAVNGELQSRS 80
Cdd:PRK08763   7 KVILVGNLGNDPDIKYTQSGMTITRISLATTSVRKDREGNTQerTEWHRVKFFGKLGEIAGEYLRKGSQCYIEGSIRYDK 86

                         90       100
                 ....*....|....*....|....*
gi 498531434  81 YDDQQGQTHYVTELVVAGFEFLESK 105
Cdd:PRK08763  87 FTGQDGQERYVTEIVADEMQMLGGR 111
PRK07459 PRK07459
single-stranded DNA-binding protein; Provisional
 7-120 1.26e-12

single-stranded DNA-binding protein; Provisional


Pssm-ID: 180986  Cd Length: 121  Bit Score: 60.08  E-value: 1.26e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498531434   7 VGRLTKSSELRVTSTGKAVANFALACKRERLDKdgnaQTTFIQCVIWGKPAEVLAKYTQKGSLIAVNGELQSRSYDDQQG 86
Cdd:PRK07459   9 VGRAGRDPEVRYFESGSVVCNLTLAVNRRSRDD----EPDWFNLEIWGKTAQVAADYVKKGSLIGITGSLKFDRWTDRNT 84

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 498531434  87 QTHYVTELV-VAGFEFLESKETVQNREQKQQMPEI 120
Cdd:PRK07459  85 GEDRSKPVIrVDRLELLGSKRDSEGNANPSNSSEI 119
PRK06293 PRK06293
single-stranded DNA-binding protein; Provisional
 7-128 2.66e-12

single-stranded DNA-binding protein; Provisional


Pssm-ID: 180517 [Multi-domain]  Cd Length: 161  Bit Score: 60.30  E-value: 2.66e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498531434   7 VGRLTKSSELRVTSTGKAVANFALACKRERLDKDgnaQTTFIQCVIWGKPAEVLAKYTQKGSLIAVNGELQSRSYDDQQG 86
Cdd:PRK06293   7 VGRLGADPEERMTSKGKRVVVLRLGVKSRVGSKD---ETVWCRCNIWGNRYDKMLPYLKKGSGVIVAGEMSPESYVDKDG 83

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 498531434  87 QTHYVTELVVAGFEFL------ESKETVQNREQKQQMPEIANAEPFYG 128
Cdd:PRK06293  84 SPQSSLVVSVDTIKFSpfgrneGSRQPSAGEDEGQQRGYDNVSIGFEG 131
PRK06341 PRK06341
single-stranded DNA-binding protein; Provisional
 3-99 1.42e-11

single-stranded DNA-binding protein; Provisional


Pssm-ID: 235782 [Multi-domain]  Cd Length: 166  Bit Score: 58.66  E-value: 1.42e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498531434   3 KTSAVGRLTKSSELRVTSTGKAVANFALACK---RERLDKDGNAQTTFIQCVIWGKP-AEVLAKYTQKGSLIAVNGELQS 78
Cdd:PRK06341   7 KVILIGNLGADPEIRRTQDGRPIANLRIATSetwRDRNSGERKEKTEWHRVVIFNEGlCKVAEQYLKKGAKVYIEGQLQT 86

                         90       100
                 ....*....|....*....|.
gi 498531434  79 RSYDDQQGQTHYVTELVVAGF 99
Cdd:PRK06341  87 RKWTDQSGVERYSTEVVLQGF 107
PRK05733 PRK05733
single-stranded DNA-binding protein; Provisional
 3-96 1.40e-10

single-stranded DNA-binding protein; Provisional


Pssm-ID: 235585 [Multi-domain]  Cd Length: 172  Bit Score: 56.09  E-value: 1.40e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 498531434   3 KTSAVGRLTKSSELRVTSTGKAVANFALACKRERLDKDGNAQ---TTFIQCVIWGKPAEVLAKYTQKGSLIAVNGELQSR 79
Cdd:PRK05733   7 KVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKverTEWHRVSLFGKVAEIAGEYLRKGSQVYIEGKLQTR 86

                         90
                 ....*....|....*..
gi 498531434  80 SYdDQQGQTHYVTELVV 96
Cdd:PRK05733  87 EW-EKDGIKRYTTEIVV 102
tRNA_anti-codon pfam01336
OB-fold nucleic acid binding domain; This family contains OB-fold domains that bind to nucleic ...
 7-85 2.86e-03

OB-fold nucleic acid binding domain; This family contains OB-fold domains that bind to nucleic acids. The family includes the anti-codon binding domain of lysyl, aspartyl, and asparaginyl -tRNA synthetases (See pfam00152). Aminoacyl-tRNA synthetases catalyze the addition of an amino acid to the appropriate tRNA molecule EC:6.1.1.-. This family also includes part of RecG helicase involved in DNA repair. Replication factor A is a hetero-trimeric complex, that contains a subunit in this family. This domain is also found at the C-terminus of bacterial DNA polymerase III alpha chain.


Pssm-ID: 460164 [Multi-domain]  Cd Length: 75  Bit Score: 34.52  E-value: 2.86e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 498531434    7 VGRLTksselRVTSTGKAVANFALackrerldKDGNAQttfIQCVIWGKPAEVLAKYTQKGSLIAVNGELQSRSYDDQQ 85
Cdd:pfam01336   4 AGRVT-----SIRRSGGKLLFLTL--------RDGTGS---IQVVVFKEEAEKLAKKLKEGDVVRVTGKVKKRKGGELE 66
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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