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Conserved domains on  [gi|498098481|ref|WP_010412637|]
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MULTISPECIES: AlpA family transcriptional regulator [Sphingomonadales]

Protein Classification

AlpA family transcriptional regulator( domain architecture ID 10531836)

AlpA family transcriptional regulator similar to Escherichia coli prophage regulatory protein AlpA, a positive regulator of the expression of the slpA gene

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Phage_AlpA pfam05930
Prophage CP4-57 regulatory protein (AlpA); This family consists of several short bacterial and ...
 19-69 7.55e-19

Prophage CP4-57 regulatory protein (AlpA); This family consists of several short bacterial and phage proteins which are related to the E. coli protein AlpA. AlpA suppress two phenotypes of a delta lon protease mutant, overproduction of capsular polysaccharide and sensitivity to UV light. Several of the sequences in this family are thought to be DNA-binding proteins.


:

Pssm-ID: 399137  Cd Length: 51  Bit Score: 72.37  E-value: 7.55e-19
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 498098481  19 DRLIRLPEVMARVGLRRTAIYQRMREGRFPKSRSLGPRCTVWVEAEIDDWI 69
Cdd:pfam05930  1 MRILRLREVEQKTGLSRSSIYRLMKEGEFPKPVRLGVRAVAWVESEIDQWI 51
 
Name Accession Description Interval E-value
Phage_AlpA pfam05930
Prophage CP4-57 regulatory protein (AlpA); This family consists of several short bacterial and ...
 19-69 7.55e-19

Prophage CP4-57 regulatory protein (AlpA); This family consists of several short bacterial and phage proteins which are related to the E. coli protein AlpA. AlpA suppress two phenotypes of a delta lon protease mutant, overproduction of capsular polysaccharide and sensitivity to UV light. Several of the sequences in this family are thought to be DNA-binding proteins.


Pssm-ID: 399137  Cd Length: 51  Bit Score: 72.37  E-value: 7.55e-19
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 498098481  19 DRLIRLPEVMARVGLRRTAIYQRMREGRFPKSRSLGPRCTVWVEAEIDDWI 69
Cdd:pfam05930  1 MRILRLREVEQKTGLSRSSIYRLMKEGEFPKPVRLGVRAVAWVESEIDQWI 51
AlpA COG3311
DNA-binding transcriptional regulator AlpA [Transcription, Mobilome: prophages, transposons];
15-69 2.06e-18

DNA-binding transcriptional regulator AlpA [Transcription, Mobilome: prophages, transposons];


Pssm-ID: 442540 [Multi-domain]  Cd Length: 64  Bit Score: 71.50  E-value: 2.06e-18
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*
gi 498098481 15 EPTPDRLIRLPEVMARVGLRRTAIYQRMREGRFPKSRSLGPRCTVWVEAEIDDWI 69
Cdd:COG3311   2 SLPPDRLLRLKEVAELLGVSRSTIYRLIKKGEFPKPVKLGGRSVRWRESEVEAWL 56
 
Name Accession Description Interval E-value
Phage_AlpA pfam05930
Prophage CP4-57 regulatory protein (AlpA); This family consists of several short bacterial and ...
 19-69 7.55e-19

Prophage CP4-57 regulatory protein (AlpA); This family consists of several short bacterial and phage proteins which are related to the E. coli protein AlpA. AlpA suppress two phenotypes of a delta lon protease mutant, overproduction of capsular polysaccharide and sensitivity to UV light. Several of the sequences in this family are thought to be DNA-binding proteins.


Pssm-ID: 399137  Cd Length: 51  Bit Score: 72.37  E-value: 7.55e-19
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 498098481  19 DRLIRLPEVMARVGLRRTAIYQRMREGRFPKSRSLGPRCTVWVEAEIDDWI 69
Cdd:pfam05930  1 MRILRLREVEQKTGLSRSSIYRLMKEGEFPKPVRLGVRAVAWVESEIDQWI 51
AlpA COG3311
DNA-binding transcriptional regulator AlpA [Transcription, Mobilome: prophages, transposons];
15-69 2.06e-18

DNA-binding transcriptional regulator AlpA [Transcription, Mobilome: prophages, transposons];


Pssm-ID: 442540 [Multi-domain]  Cd Length: 64  Bit Score: 71.50  E-value: 2.06e-18
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*
gi 498098481 15 EPTPDRLIRLPEVMARVGLRRTAIYQRMREGRFPKSRSLGPRCTVWVEAEIDDWI 69
Cdd:COG3311   2 SLPPDRLLRLKEVAELLGVSRSTIYRLIKKGEFPKPVKLGGRSVRWRESEVEAWL 56
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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