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Conserved domains on  [gi|495808560|ref|WP_008533139|]
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MULTISPECIES: YdcH family protein [Rhizobium]

Protein Classification

YdcH family protein( domain architecture ID 10009445)

YdcH family protein similar to Escherichia coli uncharacterized protein YdcH

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COG5570 COG5570
Uncharacterized conserved protein, DUF465 domain [Function unknown];
1-57 6.03e-17

Uncharacterized conserved protein, DUF465 domain [Function unknown];


:

Pssm-ID: 444312  Cd Length: 57  Bit Score: 66.35  E-value: 6.03e-17
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 495808560  1 MTVEAHLESLQKKHVALEEELHALRTAPSISDTEIAECKRRKLRIKDEIQRLKSSVH 57
Cdd:COG5570   1 MSLQSHLEELRRKHAALEREIEDEQRRPSPDDLEIAELKRRKLRLKDEIERLRAAAT 57
 
Name Accession Description Interval E-value
COG5570 COG5570
Uncharacterized conserved protein, DUF465 domain [Function unknown];
1-57 6.03e-17

Uncharacterized conserved protein, DUF465 domain [Function unknown];


Pssm-ID: 444312  Cd Length: 57  Bit Score: 66.35  E-value: 6.03e-17
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 495808560  1 MTVEAHLESLQKKHVALEEELHALRTAPSISDTEIAECKRRKLRIKDEIQRLKSSVH 57
Cdd:COG5570   1 MSLQSHLEELRRKHAALEREIEDEQRRPSPDDLEIAELKRRKLRLKDEIERLRAAAT 57
DUF465 pfam04325
Protein of unknown function (DUF465); Family members are found in small bacterial proteins, ...
 7-53 3.57e-06

Protein of unknown function (DUF465); Family members are found in small bacterial proteins, and also in the heavy chains of eukaryotic myosin and kinesin, C terminal of the motor domain (Myosin pfam00063, Kinesin pfam00225). Members of this family may form coiled coil structures.


Pssm-ID: 461262  Cd Length: 48  Bit Score: 38.90  E-value: 3.57e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 495808560   7 LESLQKKHVALEEELHALRTAPS-ISDTEIAECKRRKLRIKDEIQRLK 53
Cdd:pfam04325  1 FAKLFEEHRELDKEIRRLEARPEpTDDLELERLKKEKLRLKDEIYRLL 48
 
Name Accession Description Interval E-value
COG5570 COG5570
Uncharacterized conserved protein, DUF465 domain [Function unknown];
1-57 6.03e-17

Uncharacterized conserved protein, DUF465 domain [Function unknown];


Pssm-ID: 444312  Cd Length: 57  Bit Score: 66.35  E-value: 6.03e-17
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 495808560  1 MTVEAHLESLQKKHVALEEELHALRTAPSISDTEIAECKRRKLRIKDEIQRLKSSVH 57
Cdd:COG5570   1 MSLQSHLEELRRKHAALEREIEDEQRRPSPDDLEIAELKRRKLRLKDEIERLRAAAT 57
DUF465 pfam04325
Protein of unknown function (DUF465); Family members are found in small bacterial proteins, ...
 7-53 3.57e-06

Protein of unknown function (DUF465); Family members are found in small bacterial proteins, and also in the heavy chains of eukaryotic myosin and kinesin, C terminal of the motor domain (Myosin pfam00063, Kinesin pfam00225). Members of this family may form coiled coil structures.


Pssm-ID: 461262  Cd Length: 48  Bit Score: 38.90  E-value: 3.57e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 495808560   7 LESLQKKHVALEEELHALRTAPS-ISDTEIAECKRRKLRIKDEIQRLK 53
Cdd:pfam04325  1 FAKLFEEHRELDKEIRRLEARPEpTDDLELERLKKEKLRLKDEIYRLL 48
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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