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Conserved domains on  [gi|493531333|ref|WP_006485333|]
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MULTISPECIES: cytochrome bc complex cytochrome b subunit [Burkholderia]

Protein Classification

cytochrome bc complex cytochrome b subunit( domain architecture ID 11441733)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
9-452 2.34e-180

Cytochrome b subunit of the bc complex [Energy production and conversion];


:

Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 509.33  E-value: 2.34e-180
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333   9 STTGFTGWIDQRFPLTSTWKKHVsEYYAPKNFNFWYFFGSLALLVLVNQIVTGIFLTMNYKPDSMLAFASVEYIMREVPW 88
Cdd:COG1290    6 KASGLADWLDERLPLASLVREHL-EYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPG 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333  89 GWLIRYMHSTGASMFFVVVYLHMFRGLLYGSYRKPRELVWIFGCAIFLCLMAEAFFGYLLPWGQMSFWGAQVIVNLFSAI 168
Cdd:COG1290   85 GWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYKKPRELNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAI 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333 169 PFVGPDLSLWIRGDYVVSDVTLNRFFAFHVIAIPLVLVGLVVAHLVALHEVGSNNPDGIEIKAKKDEngiplDGIPFHPY 248
Cdd:COG1290  165 PVIGTWLVTWLFGGEFPGDATLNRFFALHVLLLPALLLALVVLHLWLLHRHGHNNPPGPERKKTEKV-----DGVPFHPY 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333 249 YSVHDFLGVCVFLMVFALIVFFSPemggyFLEANNFVPANPLQTPPEIAPVWYFTAFYAMLRATTDPfkivlmiviallg 328
Cdd:COG1290  240 YTVKDGFGFFVFLGVFALLAFFFP-----INPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPGS------------- 301

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333 329 vlalirargkwkvglpvlaaaivvfmylteSKFWGVVVMGSAVISLFFLPWLDRSPVKSIRYRPLFhKVFLGIFVAAFLT 408
Cdd:COG1290  302 ------------------------------AKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVR-TALGVAFIVFFIV 350

                        410       420       430       440
                 ....*....|....*....|....*....|....*....|....*
gi 493531333 409 LAFLGTRPpsPAATLIAQFCALIYFAFFL-GMPVWTPLGTFKQPP 452
Cdd:COG1290  351 LTILGANP--PIATLLGSINTVTYFAFFLiVLPILAFIEKTKPLP 393
 
Name Accession Description Interval E-value
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
9-452 2.34e-180

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 509.33  E-value: 2.34e-180
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333   9 STTGFTGWIDQRFPLTSTWKKHVsEYYAPKNFNFWYFFGSLALLVLVNQIVTGIFLTMNYKPDSMLAFASVEYIMREVPW 88
Cdd:COG1290    6 KASGLADWLDERLPLASLVREHL-EYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPG 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333  89 GWLIRYMHSTGASMFFVVVYLHMFRGLLYGSYRKPRELVWIFGCAIFLCLMAEAFFGYLLPWGQMSFWGAQVIVNLFSAI 168
Cdd:COG1290   85 GWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYKKPRELNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAI 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333 169 PFVGPDLSLWIRGDYVVSDVTLNRFFAFHVIAIPLVLVGLVVAHLVALHEVGSNNPDGIEIKAKKDEngiplDGIPFHPY 248
Cdd:COG1290  165 PVIGTWLVTWLFGGEFPGDATLNRFFALHVLLLPALLLALVVLHLWLLHRHGHNNPPGPERKKTEKV-----DGVPFHPY 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333 249 YSVHDFLGVCVFLMVFALIVFFSPemggyFLEANNFVPANPLQTPPEIAPVWYFTAFYAMLRATTDPfkivlmiviallg 328
Cdd:COG1290  240 YTVKDGFGFFVFLGVFALLAFFFP-----INPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPGS------------- 301

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333 329 vlalirargkwkvglpvlaaaivvfmylteSKFWGVVVMGSAVISLFFLPWLDRSPVKSIRYRPLFhKVFLGIFVAAFLT 408
Cdd:COG1290  302 ------------------------------AKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVR-TALGVAFIVFFIV 350

                        410       420       430       440
                 ....*....|....*....|....*....|....*....|....*
gi 493531333 409 LAFLGTRPpsPAATLIAQFCALIYFAFFL-GMPVWTPLGTFKQPP 452
Cdd:COG1290  351 LTILGANP--PIATLLGSINTVTYFAFFLiVLPILAFIEKTKPLP 393
CYTB MTH00145
cytochrome b; Provisional
 36-441 4.65e-115

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 342.66  E-value: 4.65e-115
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333  36 APKNFNFWYFFGSLALLVLVNQIVTGIFLTMNYKPDSMLAFASVEYIMREVPWGWLIRYMHSTGASMFFVVVYLHMFRGL 115
Cdd:MTH00145  24 APVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGL 103

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333 116 LYGSYRKPRelVWIFGCAIFLCLMAEAFFGYLLPWGQMSFWGAQVIVNLFSAIPFVGPDLSLWIRGDYVVSDVTLNRFFA 195
Cdd:MTH00145 104 YYGSYLMQH--TWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFS 181

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333 196 FHVIaIPLVLVGLVVAHLVALHEVGSNNPDGIeikakkDENGiplDGIPFHPYYSVHDFLGVCVFLMVFALIVFFSPEMg 275
Cdd:MTH00145 182 LHFL-LPFVILGLSVLHLLFLHETGSNNPLGL------DSDG---DKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNL- 250

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333 276 gyFLEANNFVPANPLQTPPEIAPVWYFTAFYAMLRAttdpfkivlmiviallgvlalirargkwkvgLPvlaaaivvfmy 355
Cdd:MTH00145 251 --LGDPENFIPANPMVTPVHIQPEWYFLFAYAILRS-------------------------------IP----------- 286

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333 356 lteSKFWGVVVMGSAVISLFFLPWLDRSPVKSIRYRPLFHKVFLgIFVAAFLTLAFLGTRPPSPAATLIAQFCALIYFAF 435
Cdd:MTH00145 287 ---NKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVLFW-IFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLF 362


                 ....*.
gi 493531333 436 FLGMPV 441
Cdd:MTH00145 363 FLILPL 368
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 22-222 2.07e-71

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 224.55  E-value: 2.07e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333  22 PLTSTWKKHVSEYYAPKNFNFWYFFGSLALLVLVNQIVTGIFLTMNYKPDSMLAFASVEYIMREVPWGWLIRYMHSTGAS 101
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333 102 MFFVVVYLHMFRGLLYGSYRKPRELVWIFGCAIFLCLMAEAFFGYLLPWGQMSFWGAQVIVNLFSAIPFVGPDLSLWIRG 181
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYKKPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 493531333 182 DYVVSDVTLNRFFAFHVIaIPLVLVGLVVAHLVALHEVGSN 222
Cdd:cd00284  161 GFSVDNATLTRFFALHFL-LPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
31-220 1.32e-61

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 198.76  E-value: 1.32e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333   31 VSEYYAPKNFNFWYFFGSLALLVLVNQIVTGIFLTMNYKPDSMLAFASVEYIMREVPWGWLIRYMHSTGASMFFVVVYLH 110
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333  111 MFRGLLYGSYRKPRELVWIFGCAIFLCLMAEAFFGYLLPWGQMSFWGAQVIVNLFSAIPFVGPDLSLWIRGDYVVSDVTL 190
Cdd:pfam00033  81 IFRGLYYGGFSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180       190
                  ....*....|....*....|....*....|
gi 493531333  191 NRFFAFHVIaIPLVLVGLVVAHLVALHEVG 220
Cdd:pfam00033 161 TRFFSLHFL-LPFILAILMLLHLLFLHETG 189
cytb_ExtP NF040969
selenite/tellurite reduction operon b-type cytochrome ExtP;
40-212 3.04e-45

selenite/tellurite reduction operon b-type cytochrome ExtP;


Pssm-ID: 468899  Cd Length: 205  Bit Score: 156.68  E-value: 3.04e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333  40 FNFWYFFGSLALLVLVNQIVTGIFLTMNYKPDSMLAFASVEYIMREVPWGWLIRYMHSTGASMFFVVVYLHMFRGLLYGS 119
Cdd:NF040969  21 FSYTWCLGGLTFLLFVILTVTGIFLMFYYVPTPEAAYESVQYLQNEVAFGQLVRNMHHWAANLMVVMVFLHMLRVFYTGS 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333 120 YRKPRELVWIFGCAIFLCLMAEAFFGYLLPWGQMSFWGAQVIVNLFSAIPFVGPDLSLWIRGDYVVSDVTLNRFFAFHVI 199
Cdd:NF040969 101 YKPPREFNWVVGVGLLVLTLGLSFTGYLLPWDQLAYWAVTVGTNIAGSIPVVGTLLQLLQLGGSEVGAATLTRFYALHVF 180

                        170
                 ....*....|...
gi 493531333 200 AIPLVLVGLVVAH 212
Cdd:NF040969 181 VLPAALIILMAAH 193
 
Name Accession Description Interval E-value
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
9-452 2.34e-180

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 509.33  E-value: 2.34e-180
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333   9 STTGFTGWIDQRFPLTSTWKKHVsEYYAPKNFNFWYFFGSLALLVLVNQIVTGIFLTMNYKPDSMLAFASVEYIMREVPW 88
Cdd:COG1290    6 KASGLADWLDERLPLASLVREHL-EYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPG 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333  89 GWLIRYMHSTGASMFFVVVYLHMFRGLLYGSYRKPRELVWIFGCAIFLCLMAEAFFGYLLPWGQMSFWGAQVIVNLFSAI 168
Cdd:COG1290   85 GWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYKKPRELNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAI 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333 169 PFVGPDLSLWIRGDYVVSDVTLNRFFAFHVIAIPLVLVGLVVAHLVALHEVGSNNPDGIEIKAKKDEngiplDGIPFHPY 248
Cdd:COG1290  165 PVIGTWLVTWLFGGEFPGDATLNRFFALHVLLLPALLLALVVLHLWLLHRHGHNNPPGPERKKTEKV-----DGVPFHPY 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333 249 YSVHDFLGVCVFLMVFALIVFFSPemggyFLEANNFVPANPLQTPPEIAPVWYFTAFYAMLRATTDPfkivlmiviallg 328
Cdd:COG1290  240 YTVKDGFGFFVFLGVFALLAFFFP-----INPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPGS------------- 301

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333 329 vlalirargkwkvglpvlaaaivvfmylteSKFWGVVVMGSAVISLFFLPWLDRSPVKSIRYRPLFhKVFLGIFVAAFLT 408
Cdd:COG1290  302 ------------------------------AKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVR-TALGVAFIVFFIV 350

                        410       420       430       440
                 ....*....|....*....|....*....|....*....|....*
gi 493531333 409 LAFLGTRPpsPAATLIAQFCALIYFAFFL-GMPVWTPLGTFKQPP 452
Cdd:COG1290  351 LTILGANP--PIATLLGSINTVTYFAFFLiVLPILAFIEKTKPLP 393
CYTB MTH00145
cytochrome b; Provisional
 36-441 4.65e-115

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 342.66  E-value: 4.65e-115
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333  36 APKNFNFWYFFGSLALLVLVNQIVTGIFLTMNYKPDSMLAFASVEYIMREVPWGWLIRYMHSTGASMFFVVVYLHMFRGL 115
Cdd:MTH00145  24 APVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGL 103

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333 116 LYGSYRKPRelVWIFGCAIFLCLMAEAFFGYLLPWGQMSFWGAQVIVNLFSAIPFVGPDLSLWIRGDYVVSDVTLNRFFA 195
Cdd:MTH00145 104 YYGSYLMQH--TWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFS 181

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333 196 FHVIaIPLVLVGLVVAHLVALHEVGSNNPDGIeikakkDENGiplDGIPFHPYYSVHDFLGVCVFLMVFALIVFFSPEMg 275
Cdd:MTH00145 182 LHFL-LPFVILGLSVLHLLFLHETGSNNPLGL------DSDG---DKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNL- 250

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333 276 gyFLEANNFVPANPLQTPPEIAPVWYFTAFYAMLRAttdpfkivlmiviallgvlalirargkwkvgLPvlaaaivvfmy 355
Cdd:MTH00145 251 --LGDPENFIPANPMVTPVHIQPEWYFLFAYAILRS-------------------------------IP----------- 286

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333 356 lteSKFWGVVVMGSAVISLFFLPWLDRSPVKSIRYRPLFHKVFLgIFVAAFLTLAFLGTRPPSPAATLIAQFCALIYFAF 435
Cdd:MTH00145 287 ---NKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVLFW-IFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLF 362


                 ....*.
gi 493531333 436 FLGMPV 441
Cdd:MTH00145 363 FLILPL 368
CYTB MTH00191
cytochrome b; Provisional
 36-439 4.92e-112

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 334.58  E-value: 4.92e-112
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333  36 APKNFNFWYFFGSLALLVLVNQIVTGIFLTMNYKPDSMLAFASVEYIMREVPWGWLIRYMHSTGASMFFVVVYLHMFRGL 115
Cdd:MTH00191  20 SPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGL 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333 116 LYGSYRkpRELVWIFGCAIFLCLMAEAFFGYLLPWGQMSFWGAQVIVNLFSAIPFVGPDLSLWIRGDYVVSDVTLNRFFA 195
Cdd:MTH00191 100 YYGSYL--NKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFT 177

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333 196 FHVIaIPLVLVGLVVAHLVALHEVGSNNPDGIEIKAKKdengipldgIPFHPYYSVHDFLGVCVFLMVFALIVFFSPEMg 275
Cdd:MTH00191 178 FHFL-LPFLIAALSLIHLLFLHETGSNNPLGLNSDSDK---------IPFHPYFSYKDILGFFILLFLLLFLVLFSPNL- 246

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333 276 gyFLEANNFVPANPLQTPPEIAPVWYFTAFYAMLRAttdpfkivlmIVIALLGVLAlirargkwkvglpvLAAAIVVfmy 355
Cdd:MTH00191 247 --LGDPENFIPANPLVTPVHIKPEWYFLFAYAILRS----------IPNKLGGVLA--------------LVMSILV--- 297

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333 356 lteskfwgvvvmgsavisLFFLPWLDRSPVKSIRYRPLFHKVFLgIFVAAFLTLAFLGTRPPSPAATLIAQFCALIYFAF 435
Cdd:MTH00191 298 ------------------LFLLPLLHTSKQRSNTFRPLTQVVFW-LWVANFILLTWLGGQPVEDPFILLGQISSFLYFFL 358


                 ....
gi 493531333 436 FLGM 439
Cdd:MTH00191 359 FLLL 362
CYTB MTH00156
cytochrome b; Provisional
 36-440 2.14e-111

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 332.52  E-value: 2.14e-111
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333  36 APKNFNFWYFFGSLALLVLVNQIVTGIFLTMNYKPDSMLAFASVEYIMREVPWGWLIRYMHSTGASMFFVVVYLHMFRGL 115
Cdd:MTH00156  13 TPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGI 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333 116 LYGSYRKPreLVWIFGCAIFLCLMAEAFFGYLLPWGQMSFWGAQVIVNLFSAIPFVGPDLSLWIRGDYVVSDVTLNRFFA 195
Cdd:MTH00156  93 YYGSYKLK--HTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFT 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333 196 FHVIaIPLVLVGLVVAHLVALHEVGSNNPDGIeikakkDENgipLDGIPFHPYYSVHDFLGVCVFLMVFALIVFFSPEMg 275
Cdd:MTH00156 171 FHFL-LPFIILAMVMIHLLFLHQTGSNNPLGL------NSN---IDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYL- 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333 276 gyFLEANNFVPANPLQTPPEIAPVWYFTAFYAMLRAttdpfkivlmiviallgvlalirargkwkvgLPvlaaaivvfmy 355
Cdd:MTH00156 240 --LGDPENFIPANPLVTPVHIQPEWYFLFAYAILRS-------------------------------IP----------- 275

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333 356 lteSKFWGVVVMGSAVISLFFLPWLDRSPVKSIRYRPLFhKVFLGIFVAAFLTLAFLGTRPPSPAATLIAQFCALIYFAF 435
Cdd:MTH00156 276 ---NKLGGVIALVMSILILMILPFTNKSKFRGNQFYPIN-KILFWIFVNIVILLTWIGARPVEEPYILTGQILTILYFLY 351


                 ....*
gi 493531333 436 FLGMP 440
Cdd:MTH00156 352 FIINP 356
CYTB MTH00119
cytochrome b; Provisional
 36-441 1.24e-109

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 328.78  E-value: 1.24e-109
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333  36 APKNFNFWYFFGSLALLVLVNQIVTGIFLTMNYKPDSMLAFASVEYIMREVPWGWLIRYMHSTGASMFFVVVYLHMFRGL 115
Cdd:MTH00119  24 TPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGL 103

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333 116 LYGSYRkpRELVWIFGCAIFLCLMAEAFFGYLLPWGQMSFWGAQVIVNLFSAIPFVGPDLSLWIRGDYVVSDVTLNRFFA 195
Cdd:MTH00119 104 YYGSYL--YKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFA 181

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333 196 FHVIaIPLVLVGLVVAHLVALHEVGSNNPDGIEIKAKKdengipldgIPFHPYYSVHDFLGVCVFLMVFALIVFFSPEMg 275
Cdd:MTH00119 182 LHFL-LPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDK---------IPFHPYFSYKDLLGLTLMLTLLLTLALFSPNL- 250

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333 276 gyFLEANNFVPANPLQTPPEIAPVWYFTAFYAMLRATtdPFKivlmiviaLLGVLAlirargkwkvglpvLAAAIVVfmy 355
Cdd:MTH00119 251 --LGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSI--PNK--------LGGVLA--------------LAASILI--- 301

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333 356 lteskfwgvvvmgsavisLFFLPWLDRSPVKSIRYRPLFHKVFLgIFVAAFLTLAFLGTRPPSPAATLIAQFCALIYFA- 434
Cdd:MTH00119 302 ------------------LFLMPFLHTSKQRSMTFRPLSQLLFW-TLVANLLILTWIGSQPVEHPFIIIGQLASILYFTi 362


                 ....*..
gi 493531333 435 FFLGMPV 441
Cdd:MTH00119 363 LLILFPL 369
CYTB MTH00100
cytochrome b; Provisional
 36-441 2.54e-107

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 323.13  E-value: 2.54e-107
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333  36 APKNFNFWYFFGSLALLVLVNQIVTGIFLTMNYKPDSMLAFASVEYIMREVPWGWLIRYMHSTGASMFFVVVYLHMFRGL 115
Cdd:MTH00100  23 APSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGL 102

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333 116 LYGSYRKPRelVWIFGCAIFLCLMAEAFFGYLLPWGQMSFWGAQVIVNLFSAIPFVGPDLSLWIRGDYVVSDVTLNRFFA 195
Cdd:MTH00100 103 YYGSYLFLE--TWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFA 180

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333 196 FHVIaIPLVLVGLVVAHLVALHEVGSNNPDGIEIKAKKdengipldgIPFHPYYSVHDFLGVCVFLMVFALIVFFSPEMG 275
Cdd:MTH00100 181 FHFI-LPFIITALAMVHLLFLHETGSNNPSGIPSDSDK---------IPFHPYYTIKDILGLLLLILTLMLLVLFSPDLL 250

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333 276 GyflEANNFVPANPLQTPPEIAPVWYFTAFYAMLRATtdPFKivlmiviaLLGVLALIrargkwkvglpvlaAAIVVfmy 355
Cdd:MTH00100 251 G---DPDNYTPANPLNTPPHIKPEWYFLFAYAILRSI--PNK--------LGGVLALL--------------LSILI--- 300

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333 356 lteskfwgvvvmgsavisLFFLPWLDRSPVKSIRYRPLFHKVFLgIFVAAFLTLAFLGTRPPSPAATLIAQFCALIYFAF 435
Cdd:MTH00100 301 ------------------LAIIPLLHTSKQRSMMFRPLSQCLFW-LLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLI 361


                 ....*..
gi 493531333 436 FLG-MPV 441
Cdd:MTH00100 362 ILIlMPI 368
CYTB MTH00016
cytochrome b; Validated
 36-440 2.33e-102

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 310.46  E-value: 2.33e-102
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333  36 APKNFNFWYFFGSLALLVLVNQIVTGIFLTMNYKPDSMLAFASVEYIMREVPWGWLIRYMHSTGASMFFVVVYLHMFRGL 115
Cdd:MTH00016  24 APSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGI 103

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333 116 LYGSYRKPRelVWIFGCAIFLCLMAEAFFGYLLPWGQMSFWGAQVIVNLFSAIPFVGPDLSLWIRGDYVVSDVTLNRFFA 195
Cdd:MTH00016 104 YYGSYFLME--TWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFA 181

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333 196 FHVIaIPLVLVGLVVAHLVALHEVGSNNPDGIEIKAKKdengipldgIPFHPYYSVHDFLGVCVFLMVFALIVFFSPEMg 275
Cdd:MTH00016 182 LHFL-LPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDK---------VPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNI- 250

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333 276 gyFLEANNFVPANPLQTPPEIAPVWYFTAFYAMLRATTDpfkivlmiviallgvlalirargkwkvglpvlaaaivvfmy 355
Cdd:MTH00016 251 --LGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPN----------------------------------------- 287

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333 356 ltesKFWGVVVMGSAVISLFFLPWLDRSPVKSIRYRPLfHKVFLGIFVAAFLTLAFLGTRPPSPAATLIAQFCALIYFAF 435
Cdd:MTH00016 288 ----KLGGVVAMFASILILFFLPFIFKQKFRGLSFYPL-NQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFFY 362


                 ....*
gi 493531333 436 FLGMP 440
Cdd:MTH00016 363 FMINP 367
CYTB MTH00131
cytochrome b; Provisional
 36-445 8.03e-99

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 301.19  E-value: 8.03e-99
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333  36 APKNFNFWYFFGSLALLVLVNQIVTGIFLTMNYKPDSMLAFASVEYIMREVPWGWLIRYMHSTGASMFFVVVYLHMFRGL 115
Cdd:MTH00131  23 APSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGL 102

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333 116 LYGSYRKPRelVWIFGCAIFLCLMAEAFFGYLLPWGQMSFWGAQVIVNLFSAIPFVGPDLSLWIRGDYVVSDVTLNRFFA 195
Cdd:MTH00131 103 YYGSYLYKE--TWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFA 180

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333 196 FHVIaIPLVLVGLVVAHLVALHEVGSNNPDGIEIKAKKdengipldgIPFHPYYSVHDFLGVCVFLMVFALIVFFSPEMG 275
Cdd:MTH00131 181 FHFL-FPFVIAAATILHLLFLHETGSNNPLGLNSDADK---------ISFHPYFSYKDLLGFAILLLALTSLALFSPNLL 250

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333 276 GyflEANNFVPANPLQTPPEIAPVWYFTAFYAMLRAttdpfkivlmIVIALLGVLALIrargkwkvglpvlaAAIVVFMy 355
Cdd:MTH00131 251 G---DPDNFTPANPLVTPPHIKPEWYFLFAYAILRS----------IPNKLGGVLALL--------------FSILVLM- 302

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333 356 lteskfwgvvvmgsavislfFLPWLDRSPVKSIRYRPLFHKVFLgIFVAAFLTLAFLGTRPPSPAATLIAQFCALIYFAF 435
Cdd:MTH00131 303 --------------------VVPILHTSKQRGLTFRPLTQFLFW-TLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSL 361

                        410
                 ....*....|
gi 493531333 436 FLgmpVWTPL 445
Cdd:MTH00131 362 FL---VLMPL 368
CYTB MTH00022
cytochrome b; Validated
 36-445 1.65e-97

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 297.77  E-value: 1.65e-97
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333  36 APKNFNFWYFFGSLALLVLVNQIVTGIFLTMNYKPDSMLAFASVEYIMREVPWGWLIRYMHSTGASMFFVVVYLHMFRGL 115
Cdd:MTH00022  22 SPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGL 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333 116 LYGSYRKPRelVWIFGCAIFLCLMAEAFFGYLLPWGQMSFWGAQVIVNLFSAIPFVGPDLSLWIRGDYVVSDVTLNRFFA 195
Cdd:MTH00022 102 YYGGYLKFH--VWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFS 179

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333 196 FHVIaIPLVLVGLVVAHLVALHEVGSNNPDGIEikakkdengIPLDGIPFHPYYSVHDFLGVCVFLMVFALIVFFSPEMG 275
Cdd:MTH00022 180 LHFL-FPFILAFLVIVHLIYLHVDGSNNPIGLN---------SSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLL 249

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333 276 GyflEANNFVPANPLQTPPEIAPVWYFTAFYAMLRATTDpfkivlmiviallgvlalirargkwkvglpvlaaaivvfmy 355
Cdd:MTH00022 250 G---DPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPN----------------------------------------- 285

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333 356 ltesKFWGVVVMGSAVISLFFLPWLDRSPVKSIRYRPLfHKVFLGIFVAAFLTLAFLGTRPPSPAATLIAQFCALIYFAF 435
Cdd:MTH00022 286 ----KLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPL-GRMAFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFY 360

                        410
                 ....*....|
gi 493531333 436 FLgmpVWTPL 445
Cdd:MTH00022 361 FL---VLIPL 367
CYTB MTH00074
cytochrome b; Provisional
 36-437 1.11e-96

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 295.82  E-value: 1.11e-96
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333  36 APKNFNFWYFFGSLALLVLVNQIVTGIFLTMNYKPDSMLAFASVEYIMREVPWGWLIRYMHSTGASMFFVVVYLHMFRGL 115
Cdd:MTH00074  24 TPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGL 103

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333 116 LYGSYRKPRelVWIFGCAIFLCLMAEAFFGYLLPWGQMSFWGAQVIVNLFSAIPFVGPDLSLWIRGDYVVSDVTLNRFFA 195
Cdd:MTH00074 104 YYGSYMYKE--TWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFA 181

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333 196 FHVIaIPLVLVGLVVAHLVALHEVGSNNPDGIEIKakkdengipLDGIPFHPYYSVHDFLGVCVFLMVFALIVFFSPEMG 275
Cdd:MTH00074 182 FHFL-LPFLIAGASIIHLLFLHETGSNNPTGLNSN---------PDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLL 251

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333 276 GyflEANNFVPANPLQTPPEIAPVWYFTAFYAMLRAttdpfkivlmIVIALLGVLALIrargkwkvglpvlaAAIVVfmy 355
Cdd:MTH00074 252 G---DPDNFTPANPLVTPPHIQPEWYFLFAYAILRS----------IPNKLGGVLALL--------------ASILI--- 301

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333 356 lteskfwgvvvmgsavisLFFLPWLDRSPVKSIRYRPLfHKVFLGIFVAAFLTLAFLGTRPPSPAATLIAQFCALIYFAF 435
Cdd:MTH00074 302 ------------------LMLIPMLHTSKQRSLMFRPL-TQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLL 362


                 ..
gi 493531333 436 FL 437
Cdd:MTH00074 363 FI 364
CYTB MTH00053
cytochrome b; Provisional
 36-437 1.44e-96

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 295.46  E-value: 1.44e-96
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333  36 APKNFNFWYFFGSLALLVLVNQIVTGIFLTMNYKPDSMLAFASVEYIMREVPWGWLIRYMHSTGASMFFVVVYLHMFRGL 115
Cdd:MTH00053  24 SPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGI 103

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333 116 LYGSYRKprELVWIFGCAIFLCLMAEAFFGYLLPWGQMSFWGAQVIVNLFSAIPFVGPDLSLWIRGDYVVSDVTLNRFFA 195
Cdd:MTH00053 104 YYGSYTK--IIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYS 181

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333 196 FHVIaIPLVLVGLVVAHLVALHEVGSNNPDGIEIKAkkdengiplDGIPFHPYYSVHDFLGVCVFLMVFALIVFFSPEMG 275
Cdd:MTH00053 182 LHYL-LPFILAGLALVHLIALHEDGSNNPIGVRSDI---------DKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSL 251

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333 276 GyflEANNFVPANPLQTPPEIAPVWYFTAFYAMLRATTdpfkivlmiviallgvlalirargkwkvglpvlaaaivvfmy 355
Cdd:MTH00053 252 G---DAENFKQANPLVTPVHIKPEWYFLFAYAILRSIP------------------------------------------ 286

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333 356 lteSKFWGVVVMGSAVISLFFLPWLDRSPVKSIRYRPLfHKVFLGIFVAAFLTLAFLGTRPPSPAATLIAQFCALIYFAF 435
Cdd:MTH00053 287 ---NKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPL-SKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAY 362


                 ..
gi 493531333 436 FL 437
Cdd:MTH00053 363 FL 364
CYTB MTH00034
cytochrome b; Validated
 36-445 8.15e-94

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 288.53  E-value: 8.15e-94
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333  36 APKNFNFWYFFGSLALLVLVNQIVTGIFLTMNYKPDSMLAFASVEYIMREVPWGWLIRYMHSTGASMFFVVVYLHMFRGL 115
Cdd:MTH00034  23 SPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGL 102

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333 116 LYGSYRKprELVWIFGCAIFLCLMAEAFFGYLLPWGQMSFWGAQVIVNLFSAIPFVGPDLSLWIRGDYVVSDVTLNRFFA 195
Cdd:MTH00034 103 YYGSYVN--IETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFA 180

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333 196 FHVIaIPLVLVGLVVAHLVALHEVGSNNPDGIEIKakkdengipLDGIPFHPYYSVHDFLGVCVFLMVFALIVFFSPemg 275
Cdd:MTH00034 181 FHFL-FPFIIAALSIIHLLFLHQTGSNNPTGLNSN---------YDKVPFHTYFTTKDLVGFLILFAALSSLALLFP--- 247

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333 276 GYFLEANNFVPANPLQTPPEIAPVWYFTAFYAMLRATTDpfkivlmiviallgvlalirargkwkvglpvlaaaivvfmy 355
Cdd:MTH00034 248 TALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPN----------------------------------------- 286

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333 356 ltesKFWGVVVMGSAVISLFFLPWLDRSPVKSIRYRPLFHKVFLgIFVAAFLTLAFLGTRPPSPAATLIAQFCALIYFAF 435
Cdd:MTH00034 287 ----KLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAFW-LLIATFFILTWIGSQPVEYPFILLGQVASVLYFSL 361

                        410
                 ....*....|
gi 493531333 436 FLgmpVWTPL 445
Cdd:MTH00034 362 FL---FFFPL 368
CYTB MTH00224
cytochrome b; Provisional
 36-443 1.48e-90

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 280.27  E-value: 1.48e-90
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333  36 APKNFNFWYFFGSLALLVLVNQIVTGIFLTMNYKPDSMLAFASVEYIMREVPWGWLIRYMHSTGASMFFVVVYLHMFRGL 115
Cdd:MTH00224  24 APNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGL 103

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333 116 LYGSYRKPRelVWIFGCAIFLCLMAEAFFGYLLPWGQMSFWGAQVIVNLFSAIPFVGPDLSLWIRGDYVVSDVTLNRFFA 195
Cdd:MTH00224 104 YYGSFNLSE--TWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFS 181

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333 196 FHVIaIPLVLVGLVVAHLVALHEVGSNNPDGIEIKAKKdengipldgIPFHPYYSVHDFLGVCVFLMVFALIVFFSPEMg 275
Cdd:MTH00224 182 FHFL-LPFAIMGATILHIMFLHQTGSNNPIGINADSAR---------IPFHPYYSIKDALGYLIAILLLSLMVLFEPNL- 250

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333 276 gyFLEANNFVPANPLQTPPEIAPVWYFTAFYAMLRATTDpfkivlmiviallgvlalirargkwkvglpvlaaaivvfmy 355
Cdd:MTH00224 251 --FTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPN----------------------------------------- 287

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333 356 ltesKFWGVVVMGSAVISLFFLPWLDRSPVKSIRYRPLfHKVFLGIFVAAFLTLAFLGTRPPSPAATLIAQFCALIYFAF 435
Cdd:MTH00224 288 ----KLGGVVALFAAILILFILPLTSVMNKRSLPFYPL-NQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFSY 362


                 ....*...
gi 493531333 436 FLGMPVWT 443
Cdd:MTH00224 363 FIISPAIS 370
CYTB MTH00033
cytochrome b; Provisional
 37-437 6.88e-76

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 242.54  E-value: 6.88e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333  37 PKNFNFWYFFGSLALLVLVNQIVTGIFLTMNYKPDSMLAFASVEYIMREVPWGWLIRYMHSTGASMFFVVVYLHMFRGLL 116
Cdd:MTH00033  21 PSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLY 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333 117 YGSYRkpRELVWIFGCAIFLCLMAEAFFGYLLPWGQMSFWGAQVIVNLFSAIPFVGPDLSLWIRGDYVVSDVTLNRFFAF 196
Cdd:MTH00033 101 YGGYS--RVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSL 178

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333 197 HVIaIPLVLVGLVVAHLVALHEVGSNNPDGIEIKAkkdengiplDGIPFHPYYSVHDFLGVCVFLMVFaLIVFFSPEMGG 276
Cdd:MTH00033 179 HYL-LPFVLVGLVLAHLLTLHEKGSNEPLGLVGLS---------DRTAFHVYFTIKDILGFLILFGVF-VIIGIEPRIET 247

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333 277 YFLEANNFVPANPLQTPPEIAPVWYFTAFYAMLRATTDpfkivlmiviallgvlalirargkwkvglpvlaaaivvfmyl 356
Cdd:MTH00033 248 LLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPN------------------------------------------ 285

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333 357 tesKFWGVVVMGSAVISLFFLPWLDRSPVKSIRYRPLfHKVFLGIFVAAFLTLAFLGTRPP-SPAATLIAQFCALIYFAF 435
Cdd:MTH00033 286 ---KLGGVLALFASILVLLLMPILDRSKIRSLTFNPT-GKFFFWFIVGDFIILTWIGSAPAgADPYVLIGRIATIFYFGY 361


                 ..
gi 493531333 436 FL 437
Cdd:MTH00033 362 FL 363
CYTB MTH00086
cytochrome b; Provisional
 36-439 8.30e-73

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 233.29  E-value: 8.30e-73
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333  36 APKNFNFWYFFGSLALLVLVNQIVTGIFLTMNYKPDSMLAFASVEYIMREVPWGWLIRYMHSTGASMFFVVVYLHMFRGL 115
Cdd:MTH00086  12 SSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGL 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333 116 LYGSYRkpRELVWIFGCAIFLCLMAEAFFGYLLPWGQMSFWGAQVIVNLFSAIPFVGPDLSLWIRGDYVVSDVTLNRFFA 195
Cdd:MTH00086  92 FMMSYR--LKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFV 169

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333 196 FHVIaIPLVLVGLVVAHLVALHEVGSNNPDGieikakkdeNGIPLDGIPFHPYYSVHDFLGVcVFLMVFALIVFFSPEmg 275
Cdd:MTH00086 170 LHFL-LPWGLLVLVLFHLIFLHSTGSTSSLY---------CHGDYDKICFGPEYWNKDAYNI-IFWLVFIIFSLFYPF-- 236

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333 276 gYFLEANNFVPANPLQTPPEIAPVWYFTAFYAMLRAttdpfkivlmIVIALLGVLALIrargkwkvglpvlaaaivvfmy 355
Cdd:MTH00086 237 -NLGDPEMFIEADPMMSPVHIVPEWYFLFAYAILRA----------IPNKVLGVIALL---------------------- 283

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333 356 lteskfwgvvvmgSAVISLFFLPWLDrspvksiRYRPLFHKV---FLGIFVAAFLTLAFLGTRPPSPAATLIAQFCALIY 432
Cdd:MTH00086 284 -------------MSIVVFYFFIFVN-------NYTSCLNKLnkfLVFSFIVVNVILSWLGQCLVEYPFLFLSQIFSFIY 343


                 ....*..
gi 493531333 433 FAFFLGM 439
Cdd:MTH00086 344 FFLILLM 350
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 22-222 2.07e-71

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 224.55  E-value: 2.07e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333  22 PLTSTWKKHVSEYYAPKNFNFWYFFGSLALLVLVNQIVTGIFLTMNYKPDSMLAFASVEYIMREVPWGWLIRYMHSTGAS 101
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333 102 MFFVVVYLHMFRGLLYGSYRKPRELVWIFGCAIFLCLMAEAFFGYLLPWGQMSFWGAQVIVNLFSAIPFVGPDLSLWIRG 181
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYKKPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 493531333 182 DYVVSDVTLNRFFAFHVIaIPLVLVGLVVAHLVALHEVGSN 222
Cdd:cd00284  161 GFSVDNATLTRFFALHFL-LPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
31-220 1.32e-61

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 198.76  E-value: 1.32e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333   31 VSEYYAPKNFNFWYFFGSLALLVLVNQIVTGIFLTMNYKPDSMLAFASVEYIMREVPWGWLIRYMHSTGASMFFVVVYLH 110
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333  111 MFRGLLYGSYRKPRELVWIFGCAIFLCLMAEAFFGYLLPWGQMSFWGAQVIVNLFSAIPFVGPDLSLWIRGDYVVSDVTL 190
Cdd:pfam00033  81 IFRGLYYGGFSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180       190
                  ....*....|....*....|....*....|
gi 493531333  191 NRFFAFHVIaIPLVLVGLVVAHLVALHEVG 220
Cdd:pfam00033 161 TRFFSLHFL-LPFILAILMLLHLLFLHETG 189
CYTB MTH00046
cytochrome b; Validated
 37-330 3.13e-56

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 190.19  E-value: 3.13e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333  37 PKNFNFWYFFGSLALL--VLVNQIVTGIFLTMNYKPDSMLAFASVEYIMREVPWGWLIRYMHSTGASMFFVVVYLHMFRG 114
Cdd:MTH00046  13 PTNYSLNYYWCSGFVLsvFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRA 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333 115 LLYGSYRKprELVWIFGCAIFLCLMAEAFFGYLLPWGQMSFWGAQVIVNLFSAIPFVGPDLSLWIRGDYVVSDVTLNRFF 194
Cdd:MTH00046  93 LYYSSYSK--KGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVF 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333 195 AFHVIaIPLVLVGLVVAHLVALHEVGSNNPDGIeikakkdeNGIPLDGIPFHPYYSVHDFLGVCVFLMVFALIVFFSPEM 274
Cdd:MTH00046 171 SVHIC-LGFVILGLMVVHLFYLHKSGSSNPLFS--------SNGYSDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDL 241

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 493531333 275 ggyFLEANNFVPANPLQTPPEIAPVWYFTAFYAMLRATTDpfKI-VLMIVIALLGVL 330
Cdd:MTH00046 242 ---VLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINS--KIgGLVLVLSFLFFL 293
PRK03735 PRK03735
cytochrome b6; Provisional
 16-224 6.32e-53

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 177.21  E-value: 6.32e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333  16 WIDQRFPLTSTWKKhVSEYYAPKNFN-------FWYFFGSLALLVLVNQIVTGIFLTMNYKPDSMLAFASVEYIMREVPW 88
Cdd:PRK03735   8 WFDERLDITPIWRD-IADHEVPEHVNpahhfsaFVYCFGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAF 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333  89 GWLIRYMHSTGASMFFVVVYLHMFRGLLYGSYRKPRELVWIFGCAIFLCLMAEAFFGYLLPWGQMSFWGAQVIVNLFSAI 168
Cdd:PRK03735  87 GWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRELNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAI 166

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 493531333 169 PFVGPDLSLWIRGDYVVSDVTLNRFFAFHVIAIPLVLVGLVVAHLVALHEVGSNNP 224
Cdd:PRK03735 167 PVIGDFIKTLLRGGEIVGAQTLTRFFAIHVFFLPWALAVLMLAHFLMIRKQGISGP 222
cytb_ExtP NF040969
selenite/tellurite reduction operon b-type cytochrome ExtP;
40-212 3.04e-45

selenite/tellurite reduction operon b-type cytochrome ExtP;


Pssm-ID: 468899  Cd Length: 205  Bit Score: 156.68  E-value: 3.04e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333  40 FNFWYFFGSLALLVLVNQIVTGIFLTMNYKPDSMLAFASVEYIMREVPWGWLIRYMHSTGASMFFVVVYLHMFRGLLYGS 119
Cdd:NF040969  21 FSYTWCLGGLTFLLFVILTVTGIFLMFYYVPTPEAAYESVQYLQNEVAFGQLVRNMHHWAANLMVVMVFLHMLRVFYTGS 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333 120 YRKPRELVWIFGCAIFLCLMAEAFFGYLLPWGQMSFWGAQVIVNLFSAIPFVGPDLSLWIRGDYVVSDVTLNRFFAFHVI 199
Cdd:NF040969 101 YKPPREFNWVVGVGLLVLTLGLSFTGYLLPWDQLAYWAVTVGTNIAGSIPVVGTLLQLLQLGGSEVGAATLTRFYALHVF 180

                        170
                 ....*....|...
gi 493531333 200 AIPLVLVGLVVAH 212
Cdd:NF040969 181 VLPAALIILMAAH 193
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
101-272 1.11e-42

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 148.54  E-value: 1.11e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333  101 SMFFVVVYLHMFRGLLYGSYRKPRELVWIFGCAIFLCLMAEAFFGYLLPWGQMSFWGAQVIVNLFSAIPFVGPDLSLWIR 180
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRELNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333  181 GDYVVSDVTLNRFFAFHVIAIPLVLVGLVVAHLVALHEVGSNNPDGIEikakkdengIPLDGIPFHPYYSVHDFLGVCVF 260
Cdd:pfam13631  81 GGPFPGTATIPRFYALHILLLPGLILALIVAHLLLVEKHGQFPPPGTE---------KNVVGVPFWPVFAVKMLLFFLIT 151

                         170
                  ....*....|..
gi 493531333  261 LMVFALIVFFSP 272
Cdd:pfam13631 152 VALLIGLAQINP 163
petB CHL00070
cytochrome b6
 16-224 5.19e-40

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 142.94  E-value: 5.19e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333  16 WIDQRFPLTSTwKKHVSEYYAPKNFNFWYFFGSLALLVLVNQIVTGIFLTMNYKPDSMLAFASVEYIMREVPWGWLIRYM 95
Cdd:CHL00070   7 WFEERLEIQAI-ADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSV 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333  96 HSTGASMFFVVVYLHMFRGLLYGSYRKPRELVWIFGCAIFLCLMAEAFFGYLLPWGQMSFWGAQVIVNLFSAIPFVGPDL 175
Cdd:CHL00070  86 HRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPL 165

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 493531333 176 SLWIRGDYVVSDVTLNRFFAFHVIAIPLVLVGLVVAHLVALHEVGSNNP 224
Cdd:CHL00070 166 VELLRGSVSVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGP 214
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
286-432 7.73e-36

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 127.98  E-value: 7.73e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333  286 PANPLQTPPEIAPVWYFTAFYAMLRATTdpfkivlmiviallgvlalirargkwkvglpvlaaaivvfmylteSKFWGVV 365
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIP---------------------------------------------SKLGGVI 35

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 493531333  366 VMGSAVISLFFLPWLDRSPVKSIRYRPLFhKVFLGIFVAAFLTLAFLGTRPPSPAATLIAQFCALIY 432
Cdd:pfam00032  36 AMGAAILILFLLPWLDRSPVRSIRYRPLF-KIFFWLFVVDFVVLGWLGKQPPTGPYTLLGQIATVYY 101
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 240-428 2.85e-17

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 78.46  E-value: 2.85e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333 240 LDGIPFHPYYSVHDFLGVCVFLMVFALIVFFSPemggYFLE-ANNFVPANPLQTPPEIAPVWYFTAFYAMLRATTDpfki 318
Cdd:cd00290    9 MDKISFHPYFWPKDLLGAFPILIIFMILVFYAP----NLLGhPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN---- 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493531333 319 vlmiviallgvlalirargkwkvglpvlaaaivvfmyltesKFWGVVVMGSAVISLFFLPWLDRSPVKSiRYRPLfHKVF 398
Cdd:cd00290   81 -----------------------------------------KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPL-RPTA 117

                        170       180       190
                 ....*....|....*....|....*....|
gi 493531333 399 LGIFVAAFLTLAFLGTRPPSPAATLIAQFC 428
Cdd:cd00290  118 FWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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