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Conserved domains on  [gi|492953345|ref|WP_006061430|]
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DUF485 domain-containing protein [Corynebacterium durum]

Protein Classification

DUF485 domain-containing protein( domain architecture ID 10006997)

DUF485 domain-containing protein similar to Escherichia coli inner membrane protein YjcH

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YjcH COG3162
Uncharacterized membrane protein, DUF485 family [Function unknown];
10-110 4.56e-37

Uncharacterized membrane protein, DUF485 family [Function unknown];


:

Pssm-ID: 442396  Cd Length: 104  Bit Score: 121.06  E-value: 4.56e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492953345  10 TPTPKEFLEVSTSPEFASLKTTFRSFAFPMTIAFLAWYLGYIVTATYATSFVQRPVFGVITVGMVLGLAQFVTAGLITWA 89
Cdd:COG3162    2 STPEEDYERIQASPEFQELVRRRRRFAFPLTAIFLVWYFGFILLIAFAPGFLATPVGGVITVGIPLGLGQFVSTFVLTGI 81

                         90       100
                 ....*....|....*....|.
gi 492953345  90 YVRFADNKLDPAAEAIRTMME 110
Cdd:COG3162   82 YVRRANREFDPLAEEIREEVE 102
 
Name Accession Description Interval E-value
YjcH COG3162
Uncharacterized membrane protein, DUF485 family [Function unknown];
10-110 4.56e-37

Uncharacterized membrane protein, DUF485 family [Function unknown];


Pssm-ID: 442396  Cd Length: 104  Bit Score: 121.06  E-value: 4.56e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492953345  10 TPTPKEFLEVSTSPEFASLKTTFRSFAFPMTIAFLAWYLGYIVTATYATSFVQRPVFGVITVGMVLGLAQFVTAGLITWA 89
Cdd:COG3162    2 STPEEDYERIQASPEFQELVRRRRRFAFPLTAIFLVWYFGFILLIAFAPGFLATPVGGVITVGIPLGLGQFVSTFVLTGI 81

                         90       100
                 ....*....|....*....|.
gi 492953345  90 YVRFADNKLDPAAEAIRTMME 110
Cdd:COG3162   82 YVRRANREFDPLAEEIREEVE 102
DUF485 pfam04341
Protein of unknown function, DUF485; This family represents a putative component of ActP-like ...
 22-106 1.80e-32

Protein of unknown function, DUF485; This family represents a putative component of ActP-like carboxylate transporters. Several members are cofit with adjacent ActP-like permeases, and the family appears to represent a membrane protein. It has been suggested to be involved in pyruvate utilization.


Pssm-ID: 461268  Cd Length: 89  Bit Score: 109.10  E-value: 1.80e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492953345   22 SPEFASLKTTFRSFAFPMTIAFLAWYLGYIVTATYATSFVQRPVF-GVITVGMVLGLAQFVTAGLITWAYVRFADNKLDP 100
Cdd:pfam04341   3 SPKFQELVRRRRRFAWPLTAIFLVWYFGFVLLAAFAPDFLATPVGeGVITVGIPLGLGQFVLTFLLTGIYVRRANREFDP 82


                  ....*.
gi 492953345  101 AAEAIR 106
Cdd:pfam04341  83 LAEEIR 88
 
Name Accession Description Interval E-value
YjcH COG3162
Uncharacterized membrane protein, DUF485 family [Function unknown];
10-110 4.56e-37

Uncharacterized membrane protein, DUF485 family [Function unknown];


Pssm-ID: 442396  Cd Length: 104  Bit Score: 121.06  E-value: 4.56e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492953345  10 TPTPKEFLEVSTSPEFASLKTTFRSFAFPMTIAFLAWYLGYIVTATYATSFVQRPVFGVITVGMVLGLAQFVTAGLITWA 89
Cdd:COG3162    2 STPEEDYERIQASPEFQELVRRRRRFAFPLTAIFLVWYFGFILLIAFAPGFLATPVGGVITVGIPLGLGQFVSTFVLTGI 81

                         90       100
                 ....*....|....*....|.
gi 492953345  90 YVRFADNKLDPAAEAIRTMME 110
Cdd:COG3162   82 YVRRANREFDPLAEEIREEVE 102
DUF485 pfam04341
Protein of unknown function, DUF485; This family represents a putative component of ActP-like ...
 22-106 1.80e-32

Protein of unknown function, DUF485; This family represents a putative component of ActP-like carboxylate transporters. Several members are cofit with adjacent ActP-like permeases, and the family appears to represent a membrane protein. It has been suggested to be involved in pyruvate utilization.


Pssm-ID: 461268  Cd Length: 89  Bit Score: 109.10  E-value: 1.80e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492953345   22 SPEFASLKTTFRSFAFPMTIAFLAWYLGYIVTATYATSFVQRPVF-GVITVGMVLGLAQFVTAGLITWAYVRFADNKLDP 100
Cdd:pfam04341   3 SPKFQELVRRRRRFAWPLTAIFLVWYFGFVLLAAFAPDFLATPVGeGVITVGIPLGLGQFVLTFLLTGIYVRRANREFDP 82


                  ....*.
gi 492953345  101 AAEAIR 106
Cdd:pfam04341  83 LAEEIR 88
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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