|
Name |
Accession |
Description |
Interval |
E-value |
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
3-239 |
8.28e-117 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 333.49 E-value: 8.28e-117
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 3 DVLLEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSADRKVARGL 82
Cdd:COG0410 1 MPMLEVENLHAGYGGIHVLHGVSLEVEEGEIVALLGRNGAGKTTLLKAISGLLPPRSGSIRFDGEDITGLPPHRIARLGI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 83 VMVPEGRLLFPDQTVEDNLVLGAYLQGGIKSPKSRssLEKVLALFPRLKERLHQQAGSMSGGEQQMLAIARGLMAEPELL 162
Cdd:COG0410 81 GYVPEGRRIFPSLTVEENLLLGAYARRDRAEVRAD--LERVYELFPRLKERRRQRAGTLSGGEQQMLAIGRALMSRPKLL 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 492878293 163 IIDELSLGLAPKIVDQLMGVLTMLNKEGLTILLVEQLASYALAIADYGFVVANGKIAREGPSTALSSDPEVMEAFLG 239
Cdd:COG0410 159 LLDEPSLGLAPLIVEEIFEIIRRLNREGVTILLVEQNARFALEIADRAYVLERGRIVLEGTAAELLADPEVREAYLG 235
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
6-230 |
8.42e-104 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 300.12 E-value: 8.42e-104
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 6 LEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSADRKVARGLVMV 85
Cdd:cd03224 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 86 PEGRLLFPDQTVEDNLVLGAYLQGGiksPKSRSSLEKVLALFPRLKERLHQQAGSMSGGEQQMLAIARGLMAEPELLIID 165
Cdd:cd03224 81 PEGRRIFPELTVEENLLLGAYARRR---AKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLD 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 492878293 166 ELSLGLAPKIVDQLMGVLTMLNKEGLTILLVEQLASYALAIADYGFVVANGKIAREGPSTALSSD 230
Cdd:cd03224 158 EPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLAD 222
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
1-239 |
3.13e-67 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 207.81 E-value: 3.13e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 1 MSDVLLEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSADRKVAR 80
Cdd:PRK11614 1 MEKVMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMRE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 81 GLVMVPEGRLLFPDQTVEDNLVLGAYLqggIKSPKSRSSLEKVLALFPRLKERLHQQAGSMSGGEQQMLAIARGLMAEPE 160
Cdd:PRK11614 81 AVAIVPEGRRVFSRMTVEENLAMGGFF---AERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPR 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 492878293 161 LLIIDELSLGLAPKIVDQLMGVLTMLNKEGLTILLVEQLASYALAIADYGFVVANGKIAREGPSTALSSDPEVMEAFLG 239
Cdd:PRK11614 158 LLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLANEAVRSAYLG 236
|
|
| urea_trans_UrtE |
TIGR03410 |
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC ... |
6-230 |
1.71e-66 |
|
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274567 [Multi-domain] Cd Length: 230 Bit Score: 205.84 E-value: 1.71e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 6 LEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSADRKVARGLVMV 85
Cdd:TIGR03410 1 LEVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 86 PEGRLLFPDQTVEDNLVLGAYLQGGikspKSRSSLEKVLALFPRLKERLHQQAGSMSGGEQQMLAIARGLMAEPELLIID 165
Cdd:TIGR03410 81 PQGREIFPRLTVEENLLTGLAALPR----RSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLD 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 492878293 166 ELSLGLAPKIVDQLMGVLTMLNKE-GLTILLVEQLASYALAIADYGFVVANGKIAREGPSTALSSD 230
Cdd:TIGR03410 157 EPTEGIQPSIIKDIGRVIRRLRAEgGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELDED 222
|
|
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
2-240 |
8.65e-59 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 186.78 E-value: 8.65e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 2 SDVLLEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSADRKVARG 81
Cdd:COG0411 1 SDPLLEVRGLTKRFGGLVAVDDVSLEVERGEIVGLIGPNGAGKTTLFNLITGFYRPTSGRILFDGRDITGLPPHRIARLG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 82 LVM---VPEgrlLFPDQTVEDNLVLGAYLQGG-------IKSPKSRSS----LEKVLAL--FPRLKERLHQQAGSMSGGE 145
Cdd:COG0411 81 IARtfqNPR---LFPELTVLENVLVAAHARLGrgllaalLRLPRARREereaRERAEELleRVGLADRADEPAGNLSYGQ 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 146 QQMLAIARGLMAEPELLIIDELSLGLAPKIVDQLMGVLTMLNKE-GLTILLVEQLASYALAIADYGFVVANGKIAREGPS 224
Cdd:COG0411 158 QRRLEIARALATEPKLLLLDEPAAGLNPEETEELAELIRRLRDErGITILLIEHDMDLVMGLADRIVVLDFGRVIAEGTP 237
|
250
....*....|....*.
gi 492878293 225 TALSSDPEVMEAFLGK 240
Cdd:COG0411 238 AEVRADPRVIEAYLGE 253
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
6-233 |
1.88e-55 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 177.63 E-value: 1.88e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 6 LEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSADRKVARGLVM- 84
Cdd:cd03219 1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRt 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 85 --VPEgrlLFPDQTVEDNLVLGAYLQGG-----IKSPKSRSSL-EKVLAL--FPRLKERLHQQAGSMSGGEQQMLAIARG 154
Cdd:cd03219 81 fqIPR---LFPELTVLENVMVAAQARTGsglllARARREEREArERAEELleRVGLADLADRPAGELSYGQQRRLEIARA 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 492878293 155 LMAEPELLIIDELSLGLAPKIVDQLMGVLTMLNKEGLTILLVEQLASYALAIADYGFVVANGKIAREGPSTALSSDPEV 233
Cdd:cd03219 158 LATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRNNPRV 236
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
6-227 |
1.93e-50 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 164.85 E-value: 1.93e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 6 LEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDttsLSADRKVARGLV-M 84
Cdd:COG1131 1 IEVRGLTKRYGDKTALDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLLRPTSGEVRVLGED---VARDPAEVRRRIgY 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 85 VPEGRLLFPDQTVEDNLVLGAYLQgGIKSPKSRSSLEKVLALFpRLKERLHQQAGSMSGGEQQMLAIARGLMAEPELLII 164
Cdd:COG1131 78 VPQEPALYPDLTVRENLRFFARLY-GLPRKEARERIDELLELF-GLTDAADRKVGTLSGGMKQRLGLALALLHDPELLIL 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 492878293 165 DELSLGLAPKIVDQLMGVLTMLNKEGLTILLVEQLASYALAIADYGFVVANGKIAREGPSTAL 227
Cdd:COG1131 156 DEPTSGLDPEARRELWELLRELAAEGKTVLLSTHYLEEAERLCDRVAIIDKGRIVADGTPDEL 218
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
6-236 |
6.46e-44 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 147.86 E-value: 6.46e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 6 LEIKNLELRY-GTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSAdRKVARGLVM 84
Cdd:COG1122 1 IELENLSFSYpGGTPALDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGLLKPTSGEVLVDGKDITKKNL-RELRRKVGL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 85 V---PEGRLLFPdqTVEDNLVLGAyLQGGIKSPKSRSSLEKVLALFpRLKERLHQQAGSMSGGEQQMLAIARGLMAEPEL 161
Cdd:COG1122 80 VfqnPDDQLFAP--TVEEDVAFGP-ENLGLPREEIRERVEEALELV-GLEHLADRPPHELSGGQKQRVAIAGVLAMEPEV 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 492878293 162 LIIDELSLGLAPKIVDQLMGVLTMLNKEGLTILLVEQLASYALAIADYGFVVANGKIAREGPSTALSSDPEVMEA 236
Cdd:COG1122 156 LVLDEPTAGLDPRGRRELLELLKRLNKEGKTVIIVTHDLDLVAELADRVIVLDDGRIVADGTPREVFSDYELLEE 230
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
6-239 |
1.39e-41 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 141.91 E-value: 1.39e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 6 LEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSADRKVARGLVMV 85
Cdd:cd03218 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 86 PEGRLLFPDQTVEDNLVlgAYLQGGIKSPKSRSS-LEKVLALFpRLKERLHQQAGSMSGGEQQMLAIARGLMAEPELLII 164
Cdd:cd03218 81 PQEASIFRKLTVEENIL--AVLEIRGLSKKEREEkLEELLEEF-HITHLRKSKASSLSGGERRRVEIARALATNPKFLLL 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 492878293 165 DELSLGLAPKIVDQLMGVLTMLNKEGLTILLVEQLASYALAIADYGFVVANGKIAREGPSTALSSDPEVMEAFLG 239
Cdd:cd03218 158 DEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAANELVRKVYLG 232
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
1-239 |
1.17e-40 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 140.13 E-value: 1.17e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 1 MSDVLLEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSaDRKVAR 80
Cdd:PRK11300 1 MSQPLLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLP-GHQIAR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 81 -GLVMVPEGRLLFPDQTVEDNLVLGAYLQ-------GGIKSPKSRSS----LEKVLALFPR--LKERLHQQAGSMSGGEQ 146
Cdd:PRK11300 80 mGVVRTFQHVRLFREMTVIENLLVAQHQQlktglfsGLLKTPAFRRAeseaLDRAATWLERvgLLEHANRQAGNLAYGQQ 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 147 QMLAIARGLMAEPELLIIDELSLGLAPKIVDQLMGVLTMLNKE-GLTILLVEQLASYALAIADYGFVVANGKIAREGPST 225
Cdd:PRK11300 160 RRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEhNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPE 239
|
250
....*....|....
gi 492878293 226 ALSSDPEVMEAFLG 239
Cdd:PRK11300 240 EIRNNPDVIKAYLG 253
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
6-222 |
2.06e-40 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 138.42 E-value: 2.06e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 6 LEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSADRkvaRGLVMV 85
Cdd:cd03259 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPER---RNIGMV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 86 PEGRLLFPDQTVEDNLVLGAYLQGgIKSPKSRSSLEKVLALFpRLKERLHQQAGSMSGGEQQMLAIARGLMAEPELLIID 165
Cdd:cd03259 78 FQDYALFPHLTVAENIAFGLKLRG-VPKAEIRARVRELLELV-GLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLD 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 492878293 166 E-LSlGLAPKIVDQLMG-VLTMLNKEGLTILLVEQLASYALAIADYGFVVANGKIAREG 222
Cdd:cd03259 156 EpLS-ALDAKLREELREeLKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
1-230 |
2.66e-40 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 139.07 E-value: 2.66e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 1 MSDVLLEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTslSADRKVAr 80
Cdd:COG1121 2 MMMPAIELENLTVSYGGRPVLEDVSLTIPPGEFVAIVGPNGAGKSTLLKAILGLLPPTSGTVRLFGKPPR--RARRRIG- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 81 glvMVPEgRLLFPDQ---TVEDNLVLGAYLQGGIKSPKSRSSLEKVLALFPR--LKERLHQQAGSMSGGEQQMLAIARGL 155
Cdd:COG1121 79 ---YVPQ-RAEVDWDfpiTVRDVVLMGRYGRRGLFRRPSRADREAVDEALERvgLEDLADRPIGELSGGQQQRVLLARAL 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 492878293 156 MAEPELLIIDELSLGLAPKIVDQLMGVLTMLNKEGLTILLV----EQLASYalaiADYGFVVANGKIAREGPSTALSSD 230
Cdd:COG1121 155 AQDPDLLLLDEPFAGVDAATEEALYELLRELRREGKTILVVthdlGAVREY----FDRVLLLNRGLVAHGPPEEVLTPE 229
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
6-230 |
7.30e-40 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 137.70 E-value: 7.30e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 6 LEIKNLELRYGTAV-AVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSL--SADRKVARGL 82
Cdd:cd03256 1 IEVENLSKTYPNGKkALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLkgKALRQLRRQI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 83 VMVPEGRLLFPDQTVEDNLVLGAY-----------LQGGIKSPKSRSSLEKVlalfpRLKERLHQQAGSMSGGEQQMLAI 151
Cdd:cd03256 81 GMIFQQFNLIERLSVLENVLSGRLgrrstwrslfgLFPKEEKQRALAALERV-----GLLDKAYQRADQLSGGQQQRVAI 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 152 ARGLMAEPELLIIDELSLGLAPKIVDQLMGVLTMLNKE-GLTILLVEQLASYALAIADYGFVVANGKIAREGPSTALSSD 230
Cdd:cd03256 156 ARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREeGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELTDE 235
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
6-203 |
1.96e-39 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 136.08 E-value: 1.96e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 6 LEIKNLELRYGTA----VAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSADRKVA-- 79
Cdd:cd03255 1 IELKNLSKTYGGGgekvQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAfr 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 80 -RGLVMVPEGRLLFPDQTVEDNLVLGAYLQGgiksPKSRSSLEKVLALFPR--LKERLHQQAGSMSGGEQQMLAIARGLM 156
Cdd:cd03255 81 rRHIGFVFQSFNLLPDLTALENVELPLLLAG----VPKKERRERAEELLERvgLGDRLNHYPSELSGGQQQRVAIARALA 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 492878293 157 AEPELLIIDELSLGLAPKIVDQLMGVLTMLNKE-GLTILLV---EQLASYA 203
Cdd:cd03255 157 NDPKIILADEPTGNLDSETGKEVMELLRELNKEaGTTIVVVthdPELAEYA 207
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
7-217 |
6.37e-39 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 134.52 E-value: 6.37e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 7 EIKNLELRYGTA--VAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSAdRKVARGLVM 84
Cdd:cd03225 1 ELKNLSFSYPDGarPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSL-KELRRKVGL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 85 V---PEGRLLFPdqTVEDNLVLGAyLQGGIKSPKSRSSLEKVLALFpRLKERLHQQAGSMSGGEQQMLAIARGLMAEPEL 161
Cdd:cd03225 80 VfqnPDDQFFGP--TVEEEVAFGL-ENLGLPEEEIEERVEEALELV-GLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDI 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 492878293 162 LIIDELSLGLAPKIVDQLMGVLTMLNKEGLTILLVEQLASYALAIADYGFVVANGK 217
Cdd:cd03225 156 LLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
7-196 |
5.00e-38 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 132.27 E-value: 5.00e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 7 EIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSadRKVArglvMVP 86
Cdd:cd03235 1 EVEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKER--KRIG----YVP 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 87 EGRLL---FPdQTVEDNLVLGAYLQGGIKSPKSRSSLEKVLALFPR--LKERLHQQAGSMSGGEQQMLAIARGLMAEPEL 161
Cdd:cd03235 75 QRRSIdrdFP-ISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERvgLSELADRQIGELSGGQQQRVLLARALVQDPDL 153
|
170 180 190
....*....|....*....|....*....|....*
gi 492878293 162 LIIDELSLGLAPKIVDQLMGVLTMLNKEGLTILLV 196
Cdd:cd03235 154 LLLDEPFAGVDPKTQEDIYELLRELRREGMTILVV 188
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
5-223 |
5.78e-38 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 133.25 E-value: 5.78e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 5 LLEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSAdRKVARGLVM 84
Cdd:COG1120 1 MLEAENLSVGYGGRPVLDDVSLSLPPGEVTALLGPNGSGKSTLLRALAGLLKPSSGEVLLDGRDLASLSR-RELARRIAY 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 85 VPEGRLLFPDQTVEDNLVLGAYLQGGIKSPKSRSSLEKV---LALFpRLKERLHQQAGSMSGGEQQMLAIARGLMAEPEL 161
Cdd:COG1120 80 VPQEPPAPFGLTVRELVALGRYPHLGLFGRPSAEDREAVeeaLERT-GLEHLADRPVDELSGGERQRVLIARALAQEPPL 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 492878293 162 LIIDEL--SLGLAPKIvdQLMGVLTMLNKE-GLTILLV----EQlasyALAIADYGFVVANGKIAREGP 223
Cdd:COG1120 159 LLLDEPtsHLDLAHQL--EVLELLRRLARErGRTVVMVlhdlNL----AARYADRLVLLKDGRIVAQGP 221
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
6-218 |
5.94e-38 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 130.60 E-value: 5.94e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 6 LEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTslSADRKVARGLVMV 85
Cdd:cd03230 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIK--KEPEEVKRRIGYL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 86 PEGRLLFPDQTVEDNLVLgaylqggikspksrsslekvlalfprlkerlhqqagsmSGGEQQMLAIARGLMAEPELLIID 165
Cdd:cd03230 79 PEEPSLYENLTVRENLKL--------------------------------------SGGMKQRLALAQALLHDPELLILD 120
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 492878293 166 ELSLGLAPKIVDQLMGVLTMLNKEGLTILLVEQLASYALAIADYGFVVANGKI 218
Cdd:cd03230 121 EPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
6-227 |
6.08e-38 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 132.11 E-value: 6.08e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 6 LEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSadRKVARGLVMV 85
Cdd:cd03265 1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREP--REVRRRIGIV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 86 PEGRLLFPDQTVEDNLVLGAYLQgGIKSPKSRSSLEKVLALFpRLKERLHQQAGSMSGGEQQMLAIARGLMAEPELLIID 165
Cdd:cd03265 79 FQDLSVDDELTGWENLYIHARLY-GVPGAERRERIDELLDFV-GLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLD 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 492878293 166 ELSLGLAPKIVDQLMGVLTMLNKE-GLTILLVEQLASYALAIADYGFVVANGKIAREGPSTAL 227
Cdd:cd03265 157 EPTIGLDPQTRAHVWEYIEKLKEEfGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
1-231 |
1.47e-37 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 137.73 E-value: 1.47e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 1 MSDVLLEIKNLELRY-----GTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSAD 75
Cdd:COG1123 256 AAEPLLEVRNLSKRYpvrgkGGVRAVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLLRPTSGSILFDGKDLTKLSRR 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 76 --RKVARGLVMV---PEGrLLFPDQTVEDNLVLGAYLQGGIKSPKSRSSLEKVLA---LFPRLKERL-HQqagsMSGGEQ 146
Cdd:COG1123 336 slRELRRRVQMVfqdPYS-SLNPRMTVGDIIAEPLRLHGLLSRAERRERVAELLErvgLPPDLADRYpHE----LSGGQR 410
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 147 QMLAIARGLMAEPELLIIDELSLGLAPKIVDQLMGVLTMLNKE-GLTILLVeqlaSYALA----IADYGFVVANGKIARE 221
Cdd:COG1123 411 QRVAIARALALEPKLLILDEPTSALDVSVQAQILNLLRDLQRElGLTYLFI----SHDLAvvryIADRVAVMYDGRIVED 486
|
250
....*....|
gi 492878293 222 GPSTALSSDP 231
Cdd:COG1123 487 GPTEEVFANP 496
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
5-238 |
2.80e-37 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 131.13 E-value: 2.80e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 5 LLEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLsaDRKVARGLVM 84
Cdd:COG4555 1 MIEVENLSKKYGKVPALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGLLKPDSGSILIDGEDVRKE--PREARRQIGV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 85 VPEGRLLFPDQTVEDNLVLGAYLQgGIKSPKSRSSLEKVLALFpRLKERLHQQAGSMSGGEQQMLAIARGLMAEPELLII 164
Cdd:COG4555 79 LPDERGLYDRLTVRENIRYFAELY-GLFDEELKKRIEELIELL-GLEEFLDRRVGELSTGMKKKVALARALVHDPKVLLL 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 492878293 165 DELSLGLAPKIVDQLMGVLTMLNKEGLTILLVEQLASYALAIADYGFVVANGKIAREGPSTALSS---DPEVMEAFL 238
Cdd:COG4555 157 DEPTNGLDVMARRLLREILRALKKEGKTVLFSSHIMQEVEALCDRVVILHKGKVVAQGSLDELREeigEENLEDAFV 233
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
3-203 |
1.73e-36 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 128.62 E-value: 1.73e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 3 DVLLEIKNLELRYGTA----VAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSaDRKV 78
Cdd:COG1136 2 SPLLELRNLTKSYGTGegevTALRGVSLSIEAGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVLIDGQDISSLS-EREL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 79 AR------GlvMVPEGRLLFPDQTVEDNLVLGAYLQGgIKSPKSRSSLEKVLALFpRLKERLHQQAGSMSGGEQQMLAIA 152
Cdd:COG1136 81 ARlrrrhiG--FVFQFFNLLPELTALENVALPLLLAG-VSRKERRERARELLERV-GLGDRLDHRPSQLSGGQQQRVAIA 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 492878293 153 RGLMAEPELLIIDELSLGLAPKIVDQLMGVLTMLNKE-GLTILLV---EQLASYA 203
Cdd:COG1136 157 RALVNRPKLILADEPTGNLDSKTGEEVLELLRELNRElGTTIVMVthdPELAARA 211
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
6-222 |
3.23e-36 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 127.33 E-value: 3.23e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 6 LEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSADRKVARGLVMV 85
Cdd:cd03268 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 86 PEgrlLFPDQTVEDNLVLGAYLQGgikspKSRSSLEKVLALFpRLKERLHQQAGSMSGGEQQMLAIARGLMAEPELLIID 165
Cdd:cd03268 81 PG---FYPNLTARENLRLLARLLG-----IRKKRIDEVLDVV-GLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILD 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 492878293 166 ELSLGLAPKIVDQLMGVLTMLNKEGLTILLVEQLASYALAIADYGFVVANGKIAREG 222
Cdd:cd03268 152 EPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
6-219 |
1.44e-35 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 128.30 E-value: 1.44e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 6 LEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDttslsADRKVARGLVMV 85
Cdd:COG4152 2 LELKGLTKRFGDKTAVDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILGILAPDSGEVLWDGEP-----LDPEDRRRIGYL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 86 PEGRLLFPDQTVEDNLVlgaYLqG---GIKSPKSRSSLEKVLALFpRLKERLHQQAGSMSGGEQQMLAIARGLMAEPELL 162
Cdd:COG4152 77 PEERGLYPKMKVGEQLV---YL-ArlkGLSKAEAKRRADEWLERL-GLGDRANKKVEELSKGNQQKVQLIAALLHDPELL 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 492878293 163 IIDELSLGLAPKIVDQLMGVLTMLNKEGLTIL-------LVEQLASYaLAIADYGFVVANGKIA 219
Cdd:COG4152 152 ILDEPFSGLDPVNVELLKDVIRELAAKGTTVIfsshqmeLVEELCDR-IVIINKGRKVLSGSVD 214
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
6-239 |
2.65e-35 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 125.91 E-value: 2.65e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 6 LEIKNLELRYGTAVaVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSADRkvaRGLVMV 85
Cdd:cd03299 1 LKVENLSKDWKEFK-LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEK---RDISYV 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 86 PEGRLLFPDQTVEDNLVLGAYLQGGIKSPKSRSSLEkvLALFPRLKERLHQQAGSMSGGEQQMLAIARGLMAEPELLIID 165
Cdd:cd03299 77 PQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLE--IAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLD 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 492878293 166 ELSLGLAPKIVDQLMGVLTMLNKE-GLTILLVEQLASYALAIADYGFVVANGKIAREG-PSTALSS-DPEVMEAFLG 239
Cdd:cd03299 155 EPFSALDVRTKEKLREELKKIRKEfGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGkPEEVFKKpKNEFVAEFLG 231
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
6-218 |
3.13e-35 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 124.95 E-value: 3.13e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 6 LEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSAD-RKVARGLVM 84
Cdd:cd03262 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNiNELRQKVGM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 85 VPEGRLLFPDQTVEDNLVLG-AYLQGGIKS---PKSRSSLEKVlalfpRLKERLHQQAGSMSGGEQQMLAIARGLMAEPE 160
Cdd:cd03262 81 VFQQFNLFPHLTVLENITLApIKVKGMSKAeaeERALELLEKV-----GLADKADAYPAQLSGGQQQRVAIARALAMNPK 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 492878293 161 LLIIDELSLGLAPKIVDQLMGVLTMLNKEGLTILLVEQLASYALAIADYGFVVANGKI 218
Cdd:cd03262 156 VMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
6-237 |
5.03e-35 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 124.92 E-value: 5.03e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 6 LEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLS--ADRKVARGLV 83
Cdd:cd03261 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSeaELYRLRRRMG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 84 MVPEGRLLFPDQTVEDNLVLGAYLQGGIKSPKSRSSLEKVLALFpRLKERLHQQAGSMSGGEQQMLAIARGLMAEPELLI 163
Cdd:cd03261 81 MLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAV-GLRGAEDLYPAELSGGMKKRVALARALALDPELLL 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 492878293 164 IDELSLGLAPKIVDQLMGVLTMLNKE-GLTILLVEQLASYALAIADYGFVVANGKIAREGPSTAL-SSDPEVMEAF 237
Cdd:cd03261 160 YDEPTAGLDPIASGVIDDLIRSLKKElGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELrASDDPLVRQF 235
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
6-227 |
8.55e-35 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 124.22 E-value: 8.55e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 6 LEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLV-----RPSSGKVFFRGEDTTSLSADR-KVA 79
Cdd:cd03260 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNdlipgAPDEGEVLLDGKDIYDLDVDVlELR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 80 RGLVMVPEGRLLFPdQTVEDNLVLGAYLQgGIKSPKSRS-----SLEKVlALFPRLKERLHqqAGSMSGGEQQMLAIARG 154
Cdd:cd03260 81 RRVGMVFQKPNPFP-GSIYDNVAYGLRLH-GIKLKEELDerveeALRKA-ALWDEVKDRLH--ALGLSGGQQQRLCLARA 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 492878293 155 LMAEPELLIIDELSLGLAP---KIVDQLMGVLtmlnKEGLTILLVEQLASYALAIADYGFVVANGKIAREGPSTAL 227
Cdd:cd03260 156 LANEPEVLLLDEPTSALDPistAKIEELIAEL----KKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
6-217 |
3.05e-34 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 121.14 E-value: 3.05e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 6 LEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSADRKVARGLV-M 84
Cdd:cd03229 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIgM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 85 VPEGRLLFPDQTVEDNLVLGaylqggikspksrsslekvlalfprlkerlhqqagsMSGGEQQMLAIARGLMAEPELLII 164
Cdd:cd03229 81 VFQDFALFPHLTVLENIALG------------------------------------LSGGQQQRVALARALAMDPDVLLL 124
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 492878293 165 DELSLGLAPKIVDQLMGVLTMLNKE-GLTILLVEQLASYALAIADYGFVVANGK 217
Cdd:cd03229 125 DEPTSALDPITRREVRALLKSLQAQlGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
1-231 |
3.50e-34 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 125.60 E-value: 3.50e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 1 MSDVLLEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSADRkvaR 80
Cdd:COG3842 1 MAMPALELENVSKRYGDVTALDDVSLSIEPGEFVALLGPSGCGKTTLLRMIAGFETPDSGRILLDGRDVTGLPPEK---R 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 81 GLVMVPEGRLLFPDQTVEDNLvlgAYlqgGIKS---PKS--RSSLEKVLALFpRLKERLHQQAGSMSGGEQQMLAIARGL 155
Cdd:COG3842 78 NVGMVFQDYALFPHLTVAENV---AF---GLRMrgvPKAeiRARVAELLELV-GLEGLADRYPHQLSGGQQQRVALARAL 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 156 MAEPELLIIDE-LSlGLAPKIVDQLMGVLTMLNKE-GLTILLV-----EqlasyALAIADYGFVVANGKIAREGPSTALS 228
Cdd:COG3842 151 APEPRVLLLDEpLS-ALDAKLREEMREELRRLQRElGITFIYVthdqeE-----ALALADRIAVMNDGRIEQVGTPEEIY 224
|
...
gi 492878293 229 SDP 231
Cdd:COG3842 225 ERP 227
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
6-223 |
8.10e-34 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 121.70 E-value: 8.10e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 6 LEIKNLELRYGTAV-AVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSaDRKVA---RG 81
Cdd:COG2884 2 IRFENVSKRYPGGReALSDVSLEIEKGEFVFLTGPSGAGKSTLLKLLYGEERPTSGQVLVNGQDLSRLK-RREIPylrRR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 82 LVMVP-EGRLLfPDQTVEDNLVLGAYLQGgiKSPKS-RSSLEKVLALFpRLKERLHQQAGSMSGGEQQMLAIARGLMAEP 159
Cdd:COG2884 81 IGVVFqDFRLL-PDRTVYENVALPLRVTG--KSRKEiRRRVREVLDLV-GLSDKAKALPHELSGGEQQRVAIARALVNRP 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 492878293 160 ELLIIDELSLGLAPKIVDQLMGVLTMLNKEGLTIL-------LVEQLASYALAIADygfvvanGKIAREGP 223
Cdd:COG2884 157 ELLLADEPTGNLDPETSWEIMELLEEINRRGTTVLiathdleLVDRMPKRVLELED-------GRLVRDEA 220
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
7-217 |
9.50e-34 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 119.27 E-value: 9.50e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 7 EIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSaDRKVARGLVMVP 86
Cdd:cd00267 1 EIENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLP-LEELRRRIGYVP 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 87 EgrllfpdqtvednlvlgaylqggikspksrsslekvlalfprlkerlhqqagsMSGGEQQMLAIARGLMAEPELLIIDE 166
Cdd:cd00267 80 Q-----------------------------------------------------LSGGQRQRVALARALLLNPDLLLLDE 106
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 492878293 167 LSLGLAPKIVDQLMGVLTMLNKEGLTILLVEQLASYALAIADYGFVVANGK 217
Cdd:cd00267 107 PTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
21-166 |
1.08e-33 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 118.90 E-value: 1.08e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 21 VRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSAdRKVARGLVMVPEGRLLFPDQTVEDN 100
Cdd:pfam00005 1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDER-KSLRKEIGYVFQDPQLFPRLTVREN 79
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 492878293 101 LVLGAYLQGgIKSPKSRSSLEKVLALFPR---LKERLHQQAGSMSGGEQQMLAIARGLMAEPELLIIDE 166
Cdd:pfam00005 80 LRLGLLLKG-LSKREKDARAEEALEKLGLgdlADRPVGERPGTLSGGQRQRVAIARALLTKPKLLLLDE 147
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
5-232 |
1.53e-33 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 121.45 E-value: 1.53e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 5 LLEIKNLELRYGTA----VAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSlsADRKVAR 80
Cdd:COG1124 1 MLEVRNLSVSYGQGgrrvPVLKDVSLEVAPGESFGLVGESGSGKSTLLRALAGLERPWSGEVTFDGRPVTR--RRRKAFR 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 81 GLV-MV---PEGRLlFPDQTVEDNLVLGAYLQGgikSPKSRSSLEKVLA---LFPRLKERL-HQqagsMSGGEQQMLAIA 152
Cdd:COG1124 79 RRVqMVfqdPYASL-HPRHTVDRILAEPLRIHG---LPDREERIAELLEqvgLPPSFLDRYpHQ----LSGGQRQRVAIA 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 153 RGLMAEPELLIIDELSLGLAPKIVDQLMGVLTMLNKE-GLTILLVEQLASYALAIADYGFVVANGKIAREGPSTALSSDP 231
Cdd:COG1124 151 RALILEPELLLLDEPTSALDVSVQAEILNLLKDLREErGLTYLFVSHDLAVVAHLCDRVAVMQNGRIVEELTVADLLAGP 230
|
.
gi 492878293 232 E 232
Cdd:COG1124 231 K 231
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
6-241 |
1.72e-33 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 121.29 E-value: 1.72e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 6 LEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSADRKVARGLVMV 85
Cdd:COG1137 4 LEAENLVKSYGKRTVVKDVSLEVNQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGRIFLDGEDITHLPMHKRARLGIGYL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 86 PEGRLLFPDQTVEDNLVlgAYLQGGIKSPKSRSS-LEKVLALFpRLKERLHQQAGSMSGGEQQMLAIARGLMAEPELLII 164
Cdd:COG1137 84 PQEASIFRKLTVEDNIL--AVLELRKLSKKEREErLEELLEEF-GITHLRKSKAYSLSGGERRRVEIARALATNPKFILL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 165 DELSLGLAPKIVDQLMGVLTMLNKEGLTILL----VEQlasyALAIADYGFVVANGKIAREGPSTALSSDPEVMEAFLGK 240
Cdd:COG1137 161 DEPFAGVDPIAVADIQKIIRHLKERGIGVLItdhnVRE----TLGICDRAYIISEGKVLAEGTPEEILNNPLVRKVYLGE 236
|
.
gi 492878293 241 K 241
Cdd:COG1137 237 D 237
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
5-222 |
2.49e-33 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 120.30 E-value: 2.49e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 5 LLEIKNLELRYGTA----VAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSADRKVAR 80
Cdd:cd03257 1 LLEVKNLSVSFPTGggsvKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 81 G--LVMVPE--GRLLFPDQTVEDNLVLGAYLQGGIKSPKSRS-SLEKVLALFPRLKERLHQQAGSMSGGEQQMLAIARGL 155
Cdd:cd03257 81 RkeIQMVFQdpMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKeAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARAL 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 492878293 156 MAEPELLIIDELSLGLAPKIVDQLMGVLTMLNKE-GLTILLVEQLASYALAIADYGFVVANGKIAREG 222
Cdd:cd03257 161 ALNPKLLIADEPTSALDVSVQAQILDLLKKLQEElGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
2-230 |
3.97e-33 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 125.13 E-value: 3.97e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 2 SDVLLEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSADRKVARG 81
Cdd:COG1129 1 AEPLLEMRGISKSFGGVKALDGVSLELRPGEVHALLGENGAGKSTLMKILSGVYQPDSGEILLDGEPVRFRSPRDAQAAG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 82 LVMVPEGRLLFPDQTVEDNLVLGAYLQ--GGIKSPKSRSSLEKVLALFpRLKERLHQQAGSMSGGEQQMLAIARGLMAEP 159
Cdd:COG1129 81 IAIIHQELNLVPNLSVAENIFLGREPRrgGLIDWRAMRRRARELLARL-GLDIDPDTPVGDLSVAQQQLVEIARALSRDA 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 492878293 160 ELLIIDELSLGLAPKIVDQLMGVLTMLNKEGLTILLV----EQLasyaLAIADYGFVVANGKIAREGPSTALSSD 230
Cdd:COG1129 160 RVLILDEPTASLTEREVERLFRIIRRLKAQGVAIIYIshrlDEV----FEIADRVTVLRDGRLVGTGPVAELTED 230
|
|
| GlnQ |
COG1126 |
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ... |
5-240 |
1.00e-32 |
|
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440743 [Multi-domain] Cd Length: 239 Bit Score: 118.94 E-value: 1.00e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 5 LLEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSADRKVARGLV- 83
Cdd:COG1126 1 MIEIENLHKSFGDLEVLKGISLDVEKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTITVDGEDLTDSKKDINKLRRKVg 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 84 MVPEGRLLFPDQTVEDNLVLG-AYLQGGIKS---PKSRSSLEKVlalfpRLKERLHQQAGSMSGGEQQMLAIARGLMAEP 159
Cdd:COG1126 81 MVFQQFNLFPHLTVLENVTLApIKVKKMSKAeaeERAMELLERV-----GLADKADAYPAQLSGGQQQRVAIARALAMEP 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 160 ELLIIDELSLGLAPKIVDQLMGVLTMLNKEGLTILLVEQLASYALAIADYGFVVANGKIAREGPSTALSSDP--EVMEAF 237
Cdd:COG1126 156 KVMLFDEPTSALDPELVGEVLDVMRDLAKEGMTMVVVTHEMGFAREVADRVVFMDGGRIVEEGPPEEFFENPqhERTRAF 235
|
...
gi 492878293 238 LGK 240
Cdd:COG1126 236 LSK 238
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
6-221 |
2.11e-32 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 115.99 E-value: 2.11e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 6 LEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSADRKVARGLVMV 85
Cdd:cd03216 1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 86 pegrllfpdqtvednlvlgaylqggikspksrsslekvlalfprlkerlHQqagsMSGGEQQMLAIARGLMAEPELLIID 165
Cdd:cd03216 81 -------------------------------------------------YQ----LSVGERQMVEIARALARNARLLILD 107
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 492878293 166 ELSLGLAPKIVDQLMGVLTMLNKEGLTILLVEQLASYALAIADYGFVVANGKIARE 221
Cdd:cd03216 108 EPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVGT 163
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
6-218 |
3.39e-32 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 117.22 E-value: 3.39e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 6 LEIKNLELRYGTA--VAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSlsaDRKVARGLV 83
Cdd:cd03263 1 LQIRNLTKTYKKGtkPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRT---DRKAARQSL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 84 -MVPEGRLLFPDQTVEDNLVLGAYLQGGIKSPKSRSSLEKVLALfpRLKERLHQQAGSMSGGEQQMLAIARGLMAEPELL 162
Cdd:cd03263 78 gYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVL--GLTDKANKRARTLSGGMKRKLSLAIALIGGPSVL 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 492878293 163 IIDELSLGLAPKIVDQLMGVLTMLnKEGLTILLVEQLASYALAIADYGFVVANGKI 218
Cdd:cd03263 156 LLDEPTSGLDPASRRAIWDLILEV-RKGRSIILTTHSMDEAEALCDRIAIMSDGKL 210
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
6-196 |
4.65e-32 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 116.61 E-value: 4.65e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 6 LEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSADRkvargLVMV 85
Cdd:cd03269 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNR-----IGYL 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 86 PEGRLLFPDQTVEDNLVLGAYLQGGIKS---PKSRSSLEKvLALFPRLKERLHQqagsMSGGEQQMLAIARGLMAEPELL 162
Cdd:cd03269 76 PEERGLYPKMKVIDQLVYLAQLKGLKKEearRRIDEWLER-LELSEYANKRVEE----LSKGNQQKVQFIAAVIHDPELL 150
|
170 180 190
....*....|....*....|....*....|....
gi 492878293 163 IIDELSLGLAPKIVDQLMGVLTMLNKEGLTILLV 196
Cdd:cd03269 151 ILDEPFSGLDPVNVELLKDVIRELARAGKTVILS 184
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
9-232 |
6.95e-32 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 116.91 E-value: 6.95e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 9 KNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSAD--RKVARGLVMVP 86
Cdd:cd03258 9 KVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKelRKARRRIGMIF 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 87 EGRLLFPDQTVEDNLVLGAYLQGgikSPKSRsSLEKVLAL--FPRLKERLHQQAGSMSGGEQQMLAIARGLMAEPELLII 164
Cdd:cd03258 89 QHFNLLSSRTVFENVALPLEIAG---VPKAE-IEERVLELleLVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLC 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 492878293 165 DELSLGLAPKIVDQLMGVLTMLNKE-GLTILLVEQLASYALAIADYGFVVANGKIAREGPSTALSSDPE 232
Cdd:cd03258 165 DEATSALDPETTQSILALLRDINRElGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFANPQ 233
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
1-238 |
6.98e-32 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 117.00 E-value: 6.98e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 1 MSDVLLEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSAD--RKV 78
Cdd:COG1127 1 MSEPMIEVRNLTKSFGDRVVLDGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLRPDSGEILVDGQDITGLSEKelYEL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 79 ARGLVMVPEGRLLFPDQTVEDNLVLGAYLQGGIKSPKSRSSLEKVLALFpRLKERLHQQAGSMSGGEQQMLAIARGLMAE 158
Cdd:COG1127 81 RRRIGMLFQGGALFDSLTVFENVAFPLREHTDLSEAEIRELVLEKLELV-GLPGAADKMPSELSGGMRKRVALARALALD 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 159 PELLIIDELSLGLAP---KIVDQLMgvLTMLNKEGLTILLV-EQLASyALAIADYGFVVANGKIAREG-PSTALSSDPEV 233
Cdd:COG1127 160 PEILLYDEPTAGLDPitsAVIDELI--RELRDELGLTSVVVtHDLDS-AFAIADRVAVLADGKIIAEGtPEELLASDDPW 236
|
....*
gi 492878293 234 MEAFL 238
Cdd:COG1127 237 VRQFL 241
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
5-236 |
3.08e-31 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 120.39 E-value: 3.08e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 5 LLEIKNLELRY--GTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPS---SGKVFFRGEDTTSLS-ADRKV 78
Cdd:COG1123 4 LLEVRDLSVRYpgGDVPAVDGVSLTIAPGETVALVGESGSGKSTLALALMGLLPHGgriSGEVLLDGRDLLELSeALRGR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 79 ARGLVMVPEGRLLFPdQTVEDNLVLGAYLQGGIKS---PKSRSSLEKVlalfpRLKERLHQQAGSMSGGEQQMLAIARGL 155
Cdd:COG1123 84 RIGMVFQDPMTQLNP-VTVGDQIAEALENLGLSRAearARVLELLEAV-----GLERRLDRYPHQLSGGQRQRVAIAMAL 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 156 MAEPELLIIDELSLGLAPKIVDQLMGVLTMLNKE-GLTILLVEQLASYALAIADYGFVVANGKIAREGPSTALSSDPEVM 234
Cdd:COG1123 158 ALDPDLLIADEPTTALDVTTQAEILDLLRELQRErGTTVLLITHDLGVVAEIADRVVVMDDGRIVEDGPPEEILAAPQAL 237
|
..
gi 492878293 235 EA 236
Cdd:COG1123 238 AA 239
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
5-195 |
8.75e-31 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 113.34 E-value: 8.75e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 5 LLEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSADrkVARGLVM 84
Cdd:COG4133 2 MLEAENLSCRRGERLLFSGLSFTLAAGEALALTGPNGSGKTTLLRILAGLLPPSAGEVLWNGEPIRDARED--YRRRLAY 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 85 VPEGRLLFPDQTVEDNLVLGAYLQGGiksPKSRSSLEKVLALFpRLKERLHQQAGSMSGGEQQMLAIARGLMAEPELLII 164
Cdd:COG4133 80 LGHADGLKPELTVRENLRFWAALYGL---RADREAIDEALEAV-GLAGLADLPVRQLSAGQKRRVALARLLLSPAPLWLL 155
|
170 180 190
....*....|....*....|....*....|.
gi 492878293 165 DELSLGLAPKIVDQLMGVLTMLNKEGLTILL 195
Cdd:COG4133 156 DEPFTALDAAGVALLAELIAAHLARGGAVLL 186
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
3-244 |
1.22e-30 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 118.58 E-value: 1.22e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 3 DVLLEIKNLELRYGtavaVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSADRKVARGL 82
Cdd:COG1129 254 EVVLEVEGLSVGGV----VRDVSFSVRAGEILGIAGLVGAGRTELARALFGADPADSGEIRLDGKPVRIRSPRDAIRAGI 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 83 VMVPEGRL---LFPDQTVEDNL---VLGAYLQGGIKSPKsrssleKVLALFPRLKERL-------HQQAGSMSGGEQQML 149
Cdd:COG1129 330 AYVPEDRKgegLVLDLSIRENItlaSLDRLSRGGLLDRR------RERALAEEYIKRLriktpspEQPVGNLSGGNQQKV 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 150 AIARGLMAEPELLIIDELSLGlapkiVD--------QLMGVLTmlnKEGLTILLV----EQLasyaLAIADYGFVVANGK 217
Cdd:COG1129 404 VLAKWLATDPKVLILDEPTRG-----IDvgakaeiyRLIRELA---AEGKAVIVIsselPEL----LGLSDRILVMREGR 471
|
250 260
....*....|....*....|....*..
gi 492878293 218 IAREGPSTALSSDpEVMEAFLGKKKST 244
Cdd:COG1129 472 IVGELDREEATEE-AIMAAATGGAAAA 497
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
6-239 |
2.26e-30 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 113.20 E-value: 2.26e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 6 LEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSA-DRKVarGLVM 84
Cdd:cd03296 3 IEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVqERNV--GFVF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 85 vpEGRLLFPDQTVEDNLVLGAYLQGGIKSPKSRSSLEKVLAL-----FPRLKERLHQQagsMSGGEQQMLAIARGLMAEP 159
Cdd:cd03296 81 --QHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELlklvqLDWLADRYPAQ---LSGGQRQRVALARALAVEP 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 160 ELLIIDELSLGLAPKIVDQLMGVLTMLNKE-GLTILLVEQLASYALAIADYGFVVANGKIAREGPSTALSSDPE---VME 235
Cdd:cd03296 156 KVLLLDEPFGALDAKVRKELRRWLRRLHDElHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDHPAspfVYS 235
|
....
gi 492878293 236 aFLG 239
Cdd:cd03296 236 -FLG 238
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
6-196 |
3.08e-30 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 112.18 E-value: 3.08e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 6 LEIKNLELRYGTA----VAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSADRkvarg 81
Cdd:cd03293 1 LEVRNVSKTYGGGggavTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDR----- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 82 lVMVPEGRLLFPDQTVEDNLVLGAYLQgGIKSPKSRSSLEKVLALFpRLKERLHQQAGSMSGGEQQMLAIARGLMAEPEL 161
Cdd:cd03293 76 -GYVFQQDALLPWLTVLDNVALGLELQ-GVPKAEARERAEELLELV-GLSGFENAYPHQLSGGMRQRVALARALAVDPDV 152
|
170 180 190
....*....|....*....|....*....|....*....
gi 492878293 162 LIIDE----LSLGLAPKIVDQLmgvLTMLNKEGLTILLV 196
Cdd:cd03293 153 LLLDEpfsaLDALTREQLQEEL---LDIWRETGKTVLLV 188
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
1-166 |
4.03e-30 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 112.88 E-value: 4.03e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 1 MSDVLLEIKNLELRYGTA----VAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSADR 76
Cdd:COG1116 3 AAAPALELRGVSKRFPTGgggvTALDDVSLTVAAGEFVALVGPSGCGKSTLLRLIAGLEKPTSGEVLVDGKPVTGPGPDR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 77 kvarglVMVPEGRLLFPDQTVEDNLVLGAYLQGgIKSPKSRSSLEKVLALFpRLKERLHQQAGSMSGGEQQMLAIARGLM 156
Cdd:COG1116 83 ------GVVFQEPALLPWLTVLDNVALGLELRG-VPKAERRERARELLELV-GLAGFEDAYPHQLSGGMRQRVAIARALA 154
|
170
....*....|
gi 492878293 157 AEPELLIIDE 166
Cdd:COG1116 155 NDPEVLLMDE 164
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
7-222 |
4.28e-30 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 110.60 E-value: 4.28e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 7 EIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSAdRKVARGLVMVP 86
Cdd:cd03214 1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSP-KELARKIAYVP 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 87 EgrllfpdqtvednlvlgaylqggikspksrsSLEKVlalfpRLKERLHQQAGSMSGGEQQMLAIARGLMAEPELLIIDE 166
Cdd:cd03214 80 Q-------------------------------ALELL-----GLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDE 123
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 492878293 167 LSLGLAPKIVDQLMGVLTMLNKE-GLTILLVEQLASYALAIADYGFVVANGKIAREG 222
Cdd:cd03214 124 PTSHLDIAHQIELLELLRRLARErGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
1-239 |
4.46e-29 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 112.12 E-value: 4.46e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 1 MSDVLLEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSADRkvaR 80
Cdd:PRK11432 2 TQKNFVVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQ---R 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 81 GLVMVPEGRLLFPDQTVEDNLVLGAYLQgGIKSPKSRSSLEKVLAL--FPRLKERLHQQagsMSGGEQQMLAIARGLMAE 158
Cdd:PRK11432 79 DICMVFQSYALFPHMSLGENVGYGLKML-GVPKEERKQRVKEALELvdLAGFEDRYVDQ---ISGGQQQRVALARALILK 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 159 PELLIIDE----LSLGLAPKIVDQLMGVLTMLNkegLTILLVEQLASYALAIADYGFVVANGKIAREGPSTALSSDP--E 232
Cdd:PRK11432 155 PKVLLFDEplsnLDANLRRSMREKIRELQQQFN---ITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPasR 231
|
....*..
gi 492878293 233 VMEAFLG 239
Cdd:PRK11432 232 FMASFMG 238
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
6-218 |
5.58e-29 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 109.25 E-value: 5.58e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 6 LEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSADRkvaRGLVMV 85
Cdd:cd03300 1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHK---RPVNTV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 86 PEGRLLFPDQTVEDNLVLGAYLQggiKSPKS--RSSLEKVLALFpRLKERLHQQAGSMSGGEQQMLAIARGLMAEPELLI 163
Cdd:cd03300 78 FQNYALFPHLTVFENIAFGLRLK---KLPKAeiKERVAEALDLV-QLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLL 153
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 492878293 164 IDELSLGLAPKIVDQLMGVLTMLNKE-GLTILLVEQLASYALAIADYGFVVANGKI 218
Cdd:cd03300 154 LDEPLGALDLKLRKDMQLELKRLQKElGITFVFVTHDQEEALTMSDRIAVMNKGKI 209
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
1-196 |
5.88e-29 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 113.97 E-value: 5.88e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 1 MSDVLLEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSADRKVAR 80
Cdd:COG3845 1 MMPPALELRGITKRFGGVVANDDVSLTVRPGEIHALLGENGAGKSTLMKILYGLYQPDSGEILIDGKPVRIRSPRDAIAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 81 GLVMVPEGRLLFPDQTVEDNLVLGA-YLQGGIKSPKS-RSSLEKVLALFPrLKERLHQQAGSMSGGEQQMLAIARGLMAE 158
Cdd:COG3845 81 GIGMVHQHFMLVPNLTVAENIVLGLePTKGGRLDRKAaRARIRELSERYG-LDVDPDAKVEDLSVGEQQRVEILKALYRG 159
|
170 180 190
....*....|....*....|....*....|....*...
gi 492878293 159 PELLIIDELSLGLAPKIVDQLMGVLTMLNKEGLTILLV 196
Cdd:COG3845 160 ARILILDEPTAVLTPQEADELFEILRRLAAEGKSIIFI 197
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
5-235 |
5.88e-29 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 110.17 E-value: 5.88e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 5 LLEIKNLELRY--GTaVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGE----DTTSLSADRKV 78
Cdd:PRK13639 1 ILETRDLKYSYpdGT-EALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEpikyDKKSLLEVRKT 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 79 ArGLVMV-PEGRLLFPdqTVEDNLVLGAyLQGGIK----SPKSRSSLEKVLALFPRLKERLHqqagsMSGGEQQMLAIAR 153
Cdd:PRK13639 80 V-GIVFQnPDDQLFAP--TVEEDVAFGP-LNLGLSkeevEKRVKEALKAVGMEGFENKPPHH-----LSGGQKKRVAIAG 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 154 GLMAEPELLIIDELSLGLAPKIVDQLMGVLTMLNKEGLTILLVEQLASYALAIADYGFVVANGKIAREGPSTALSSDPEV 233
Cdd:PRK13639 151 ILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSDIET 230
|
..
gi 492878293 234 ME 235
Cdd:PRK13639 231 IR 232
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
2-209 |
6.95e-29 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 109.74 E-value: 6.95e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 2 SDVLLEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVR----------GATglvrpSSGKVFFRGEDTTS 71
Cdd:COG1117 8 LEPKIEVRNLNVYYGDKQALKDINLDIPENKVTALIGPSGCGKSTLLRclnrmndlipGAR-----VEGEILLDGEDIYD 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 72 LSAD-----RKVArglvMV-----PegrllFPdQTVEDNLVLGAYLQGgIKSPKS-----RSSLEKVlALFPRLKERLHQ 136
Cdd:COG1117 83 PDVDvvelrRRVG----MVfqkpnP-----FP-KSIYDNVAYGLRLHG-IKSKSEldeivEESLRKA-ALWDEVKDRLKK 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 137 QAGSMSGGEQQMLAIARGLMAEPELLIIDELSLGLAP---KIVDQLMGVLtmlnKEGLTILLV----EQlasyALAIADY 209
Cdd:COG1117 151 SALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPistAKIEELILEL----KKDYTIVIVthnmQQ----AARVSDY 222
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
5-236 |
7.07e-29 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 113.61 E-value: 7.07e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 5 LLEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSADRKVARGLVM 84
Cdd:PRK15439 11 LLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 85 VPEGRLLFPDQTVEDNLVLGAylqggiksPKSRSSLEKVLALFPRLKERL--HQQAGSMSGGEQQMLAIARGLMAEPELL 162
Cdd:PRK15439 91 VPQEPLLFPNLSVKENILFGL--------PKRQASMQKMKQLLAALGCQLdlDSSAGSLEVADRQIVEILRGLMRDSRIL 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 492878293 163 IIDELSLGLAPKIVDQLMGVLTMLNKEGLTILLVEQLASYALAIADYGFVVANGKIAREGPsTALSSDPEVMEA 236
Cdd:PRK15439 163 ILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGK-TADLSTDDIIQA 235
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
5-222 |
8.88e-29 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 108.22 E-value: 8.88e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 5 LLEIKNLELRY----GTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTtsLSADRKVAR 80
Cdd:cd03266 1 MITADALTKRFrdvkKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDV--VKEPAEARR 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 81 GLVMVPEGRLLFPDQTVEDNLVLGAYLQgGIKSPKSRSSLEKVLALFpRLKERLHQQAGSMSGGEQQMLAIARGLMAEPE 160
Cdd:cd03266 79 RLGFVSDSTGLYDRLTARENLEYFAGLY-GLKGDELTARLEELADRL-GMEELLDRRVGGFSTGMRQKVAIARALVHDPP 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 492878293 161 LLIIDELSLGLAPKIVDQLMGVLTMLNKEGLTILLVEQLASYALAIADYGFVVANGKIAREG 222
Cdd:cd03266 157 VLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
1-230 |
1.15e-28 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 110.28 E-value: 1.15e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 1 MSDVLLEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSadrKVAR 80
Cdd:PRK13537 3 MSVAPIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA---RHAR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 81 GLV-MVPEGRLLFPDQTVEDNL-VLGAYLqgGIKSPKSRSSLEKVLAlFPRLKERLHQQAGSMSGGEQQMLAIARGLMAE 158
Cdd:PRK13537 80 QRVgVVPQFDNLDPDFTVRENLlVFGRYF--GLSAAAARALVPPLLE-FAKLENKADAKVGELSGGMKRRLTLARALVND 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 492878293 159 PELLIIDELSLGLAPKIVDQLMGVLTMLNKEGLTILLVEQLASYALAIADYGFVVANG-KIAREGPSTALSSD 230
Cdd:PRK13537 157 PDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGrKIAEGAPHALIESE 229
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
6-243 |
1.36e-28 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 108.54 E-value: 1.36e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 6 LEIKNLELRY-GTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSA---DRKVarG 81
Cdd:cd03295 1 IEFENVTKRYgGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPvelRRKI--G 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 82 LVMVPEGrlLFPDQTVEDNLVLGAYLQgGIKSPKSRSSLEKVLALF----PRLKERLHQQagsMSGGEQQMLAIARGLMA 157
Cdd:cd03295 79 YVIQQIG--LFPHMTVEENIALVPKLL-KWPKEKIRERADELLALVgldpAEFADRYPHE---LSGGQQQRVGVARALAA 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 158 EPELLIIDELSLGLAPKIVDQLMGVLTMLNKE-GLTILLVEQLASYALAIADYGFVVANGKIAREG-PSTALSSD-PEVM 234
Cdd:cd03295 153 DPPLLLMDEPFGALDPITRDQLQEEFKRLQQElGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGtPDEILRSPaNDFV 232
|
....*....
gi 492878293 235 EAFLGKKKS 243
Cdd:cd03295 233 AEFVGADRL 241
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
5-231 |
3.60e-28 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 107.49 E-value: 3.60e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 5 LLEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSAD-RKVARGLV 83
Cdd:PRK09493 1 MIEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDeRLIRQEAG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 84 MVPEGRLLFPDQTVEDNLVLGAYLQGGIKSPKSRSSLEKVLALFPrLKERLHQQAGSMSGGEQQMLAIARGLMAEPELLI 163
Cdd:PRK09493 81 MVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVG-LAERAHHYPSELSGGQQQRVAIARALAVKPKLML 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 492878293 164 IDELSLGLAPKIVDQLMGVLTMLNKEGLTILLVEQLASYALAIADYGFVVANGKIAREGPSTALSSDP 231
Cdd:PRK09493 160 FDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNP 227
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
6-222 |
6.23e-28 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 105.80 E-value: 6.23e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 6 LEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSA-DRKVArglvM 84
Cdd:cd03301 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPkDRDIA----M 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 85 VPEGRLLFPDQTVEDNLVLGAYLQggiKSPKsRSSLEKVL--ALFPRLKERLHQQAGSMSGGEQQMLAIARGLMAEPELL 162
Cdd:cd03301 77 VFQNYALYPHMTVYDNIAFGLKLR---KVPK-DEIDERVRevAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVF 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 492878293 163 IIDE-LSlGLAPKIVDQLMGVLTMLNKE-GLTILLVEQLASYALAIADYGFVVANGKIAREG 222
Cdd:cd03301 153 LMDEpLS-NLDAKLRVQMRAELKRLQQRlGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
6-222 |
7.74e-28 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 105.74 E-value: 7.74e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 6 LEIKNLELRYGTAVAVRNISISVKRGqLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTslsADRKVARGLV-M 84
Cdd:cd03264 1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVL---KQPQKLRRRIgY 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 85 VPEGRLLFPDQTVEDNLVLGAYLQgGIKSPKSRSSLEKVLALFpRLKERLHQQAGSMSGGEQQMLAIARGLMAEPELLII 164
Cdd:cd03264 77 LPQEFGVYPNFTVREFLDYIAWLK-GIPSKEVKARVDEVLELV-NLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIV 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 492878293 165 DELSLGLAPKIVDQLMGVLTMLNKEGLTIL---LVEQLASYALAIAdygfVVANGKIAREG 222
Cdd:cd03264 155 DEPTAGLDPEERIRFRNLLSELGEDRIVILsthIVEDVESLCNQVA----VLNKGKLVFEG 211
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
3-218 |
8.17e-28 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 104.82 E-value: 8.17e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 3 DVLLEIKNLelryGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSADRKVARGL 82
Cdd:cd03215 2 EPVLEVRGL----SVKGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGI 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 83 VMVPEGRL---LFPDQTVEDNLVLGAYLqggikspksrsslekvlalfprlkerlhqqagsmSGGEQQMLAIARGLMAEP 159
Cdd:cd03215 78 AYVPEDRKregLVLDLSVAENIALSSLL----------------------------------SGGNQQKVVLARWLARDP 123
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 160 ELLIIDELSLGLAPKIVDQLMGVLTMLNKEGLTILLV-EQLASyALAIADYGFVVANGKI 218
Cdd:cd03215 124 RVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLIsSELDE-LLGLCDRILVMYEGRI 182
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
6-239 |
2.30e-27 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 107.47 E-value: 2.30e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 6 LEIKNLELRYGTA----VAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSAD--RKVA 79
Cdd:COG1135 2 IELENLSKTFPTKggpvTALDDVSLTIEKGEIFGIIGYSGAGKSTLIRCINLLERPTSGSVLVDGVDLTALSERelRAAR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 80 RGLVMVPEGRLLFPDQTVEDNLVLGAYLQGgiKSPKSRssLEKVLALFPR--LKERLHQQAGSMSGGEQQMLAIARGLMA 157
Cdd:COG1135 82 RKIGMIFQHFNLLSSRTVAENVALPLEIAG--VPKAEI--RKRVAELLELvgLSDKADAYPSQLSGGQKQRVGIARALAN 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 158 EPELLIIDELSLGLAPKIVDQLMGVLTMLNKE-GLTILLVEQLASYALAIADYGFVVANGKIAREGPSTALSSDP--EVM 234
Cdd:COG1135 158 NPKVLLCDEATSALDPETTRSILDLLKDINRElGLTIVLITHEMDVVRRICDRVAVLENGRIVEQGPVLDVFANPqsELT 237
|
....*
gi 492878293 235 EAFLG 239
Cdd:COG1135 238 RRFLP 242
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
7-218 |
3.44e-27 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 103.88 E-value: 3.44e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 7 EIKNLELRYGTAV-AVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTslSADRKVARGLVMV 85
Cdd:cd03226 1 RIENISFSYKKGTeILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIK--AKERRKSIGYVMQ 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 86 PEGRLLFPDqTVEDNLVLGAYLqggikSPKSRSSLEKVLALFP--RLKERlHQQagSMSGGEQQMLAIARGLMAEPELLI 163
Cdd:cd03226 79 DVDYQLFTD-SVREELLLGLKE-----LDAGNEQAETVLKDLDlyALKER-HPL--SLSGGQKQRLAIAAALLSGKDLLI 149
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 492878293 164 IDELSLGLAPKIVDQLMGVLTMLNKEGLTILLVEQLASYALAIADYGFVVANGKI 218
Cdd:cd03226 150 FDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAI 204
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
6-241 |
5.61e-27 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 104.61 E-value: 5.61e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 6 LEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVR--PS---SGKVFFRGEDT--TSLSADRKV 78
Cdd:PRK14247 4 IEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIElyPEarvSGEVYLDGQDIfkMDVIELRRR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 79 ARGLVMVPEGrllFPDQTVEDNLVLGAYLQGGIKSPKS-----RSSLEKVlALFPRLKERLHQQAGSMSGGEQQMLAIAR 153
Cdd:PRK14247 84 VQMVFQIPNP---IPNLSIFENVALGLKLNRLVKSKKElqervRWALEKA-QLWDEVKDRLDAPAGKLSGGQQQRLCIAR 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 154 GLMAEPELLIIDELSLGLAPKIVDQLMGVLTMLNKEgLTILLVEQLASYALAIADYGFVVANGKIAREGPSTALSSDP-- 231
Cdd:PRK14247 160 ALAFQPEVLLADEPTANLDPENTAKIESLFLELKKD-MTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFTNPrh 238
|
250
....*....|
gi 492878293 232 EVMEAFLGKK 241
Cdd:PRK14247 239 ELTEKYVTGR 248
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
6-239 |
1.23e-26 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 102.91 E-value: 1.23e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 6 LEIKNLELRYGTAVAvrNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLS-ADRKVArglvM 84
Cdd:COG3840 2 LRLDDLTYRYGDFPL--RFDLTIAAGERVAILGPSGAGKSTLLNLIAGFLPPDSGRILWNGQDLTALPpAERPVS----M 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 85 VPEGRLLFPDQTVEDNLVLGayLQGGIK-SPKSRSSLEKVLAlfpR-----LKERLHQQagsMSGGEQQMLAIARGLMAE 158
Cdd:COG3840 76 LFQENNLFPHLTVAQNIGLG--LRPGLKlTAEQRAQVEQALE---RvglagLLDRLPGQ---LSGGQRQRVALARCLVRK 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 159 PELLIIDELSLGLAPKIVDQLMGVLTMLNKE-GLTILLVEQLASYALAIADYGFVVANGKIAREGPSTALSS--DPEVME 235
Cdd:COG3840 148 RPILLLDEPFSALDPALRQEMLDLVDELCRErGLTVLMVTHDPEDAARIADRVLLVADGRIAADGPTAALLDgePPPALA 227
|
....
gi 492878293 236 AFLG 239
Cdd:COG3840 228 AYLG 231
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
1-218 |
5.18e-26 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 104.00 E-value: 5.18e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 1 MSDVllEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLS-ADRKVA 79
Cdd:COG3839 1 MASL--ELENVSKSYGGVEALKDIDLDIEDGEFLVLLGPSGCGKSTLLRMIAGLEDPTSGEILIGGRDVTDLPpKDRNIA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 80 rglvMVPEGRLLFPDQTVEDNLVLGAYLQggiKSPKS--RSSLEKVLALFpRLKERLHQQAGSMSGGEQQMLAIARGLMA 157
Cdd:COG3839 79 ----MVFQSYALYPHMTVYENIAFPLKLR---KVPKAeiDRRVREAAELL-GLEDLLDRKPKQLSGGQRQRVALGRALVR 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 492878293 158 EPELLIIDE-LSlGLAPKIVDQLMGVLTMLNKE-GLTILLV-----EqlasyALAIADYGFVVANGKI 218
Cdd:COG3839 151 EPKVFLLDEpLS-NLDAKLRVEMRAEIKRLHRRlGTTTIYVthdqvE-----AMTLADRIAVMNDGRI 212
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
7-223 |
7.10e-26 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 103.34 E-value: 7.10e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 7 EIKNLELRYGTA----VAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSAD--RKVAR 80
Cdd:PRK11153 3 ELKNISKVFPQGgrtiHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKelRKARR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 81 GLVMVPEGRLLFPDQTVEDNLVLGAYLQGgikspKSRSSLEK-VLALFPR--LKERLHQQAGSMSGGEQQMLAIARGLMA 157
Cdd:PRK11153 83 QIGMIFQHFNLLSSRTVFDNVALPLELAG-----TPKAEIKArVTELLELvgLSDKADRYPAQLSGGQKQRVAIARALAS 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 492878293 158 EPELLIIDELSLGLAPKIVDQLMGVLTMLNKE-GLTILLVEQLASYALAIADYGFVVANGKIAREGP 223
Cdd:PRK11153 158 NPKVLLCDEATSALDPATTRSILELLKDINRElGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGT 224
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
1-228 |
4.51e-25 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 99.32 E-value: 4.51e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 1 MSdvlLEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKV-----FFRGEDTTSLSAD 75
Cdd:PRK11124 1 MS---IQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLniagnHFDFSKTPSDKAI 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 76 RKVARGLVMVPEGRLLFPDQTVEDNLVLGAYLQGGIKSPKSRSSLEKVLAlfpRLkeRLHQQAGS----MSGGEQQMLAI 151
Cdd:PRK11124 78 RELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLE---RL--RLKPYADRfplhLSGGQQQRVAI 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 492878293 152 ARGLMAEPELLIIDELSLGLAPKIVDQLMGVLTMLNKEGLTILLVEQLASYALAIADYGFVVANGKIAREGPSTALS 228
Cdd:PRK11124 153 ARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFT 229
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
6-195 |
4.65e-25 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 98.63 E-value: 4.65e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 6 LEIKNLELRY-GTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSaDRKVA---RG 81
Cdd:cd03292 1 IEFINVTKTYpNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLR-GRAIPylrRK 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 82 LVMVPEGRLLFPDQTVEDNLVLGAYLQGgiKSPksRSSLEKVLALFPR--LKERLHQQAGSMSGGEQQMLAIARGLMAEP 159
Cdd:cd03292 80 IGVVFQDFRLLPDRNVYENVAFALEVTG--VPP--REIRKRVPAALELvgLSHKHRALPAELSGGEQQRVAIARAIVNSP 155
|
170 180 190
....*....|....*....|....*....|....*.
gi 492878293 160 ELLIIDELSLGLAPKIVDQLMGVLTMLNKEGLTILL 195
Cdd:cd03292 156 TILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVV 191
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
5-231 |
5.22e-25 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 100.51 E-value: 5.22e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 5 LLEIKNLELRY----GTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRP---SSGKVFFRGEDTTSLSAD-- 75
Cdd:COG0444 1 LLEVRNLKVYFptrrGVVKAVDGVSFDVRRGETLGLVGESGSGKSTLARAILGLLPPpgiTSGEILFDGEDLLKLSEKel 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 76 RKV-ARGLVMVPEGRL--LFPDQTVEDNLVLGAYLQGGIKSPKSRsslEKVLALF-----PRLKERL----HQqagsMSG 143
Cdd:COG0444 81 RKIrGREIQMIFQDPMtsLNPVMTVGDQIAEPLRIHGGLSKAEAR---ERAIELLervglPDPERRLdrypHE----LSG 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 144 GEQQMLAIARGLMAEPELLIIDELSLGLAPKIVDQLMGVLTMLNKE-GLTILL-------VEQLAS-----YAlaiadyg 210
Cdd:COG0444 154 GMRQRVMIARALALEPKLLIADEPTTALDVTIQAQILNLLKDLQRElGLAILFithdlgvVAEIADrvavmYA------- 226
|
250 260
....*....|....*....|.
gi 492878293 211 fvvanGKIAREGPSTALSSDP 231
Cdd:COG0444 227 -----GRIVEEGPVEELFENP 242
|
|
| PhnK |
COG1101 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
6-196 |
7.61e-25 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 99.00 E-value: 7.61e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 6 LEIKNLELRY--GTA---VAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSADRK--- 77
Cdd:COG1101 2 LELKNLSKTFnpGTVnekRALDGLNLTIEEGDFVTVIGSNGAGKSTLLNAIAGSLPPDSGSILIDGKDVTKLPEYKRaky 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 78 VARglvmvpegrlLF--------PDQTVEDNLVLgAYLQG---GIK---SPKSRSSLEKVLALFPR-LKERLHQQAGSMS 142
Cdd:COG1101 82 IGR----------VFqdpmmgtaPSMTIEENLAL-AYRRGkrrGLRrglTKKRRELFRELLATLGLgLENRLDTKVGLLS 150
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 492878293 143 GGEQQMLAIargLMA---EPELLIIDELSLGLAPKIVDQLMGvLT--MLNKEGLTILLV 196
Cdd:COG1101 151 GGQRQALSL---LMAtltKPKLLLLDEHTAALDPKTAALVLE-LTekIVEENNLTTLMV 205
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
5-233 |
8.05e-25 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 99.29 E-value: 8.05e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 5 LLEIKNLELRY--GTAvAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDT---TSLSADRKVA 79
Cdd:PRK13644 1 MIRLENVSYSYpdGTP-ALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTgdfSKLQGIRKLV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 80 RGLVMVPEGRllFPDQTVEDNLVLGAYlQGGIKSPKSRSSLEKVLALFPRLKERlHQQAGSMSGGEQQMLAIARGLMAEP 159
Cdd:PRK13644 80 GIVFQNPETQ--FVGRTVEEDLAFGPE-NLCLPPIEIRKRVDRALAEIGLEKYR-HRSPKTLSGGQGQCVALAGILTMEP 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 492878293 160 ELLIIDELSLGLAPKIVDQLMGVLTMLNKEGLTILLVEQLASyALAIADYGFVVANGKIAREGPSTALSSDPEV 233
Cdd:PRK13644 156 ECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLE-ELHDADRIIVMDRGKIVLEGEPENVLSDVSL 228
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
6-222 |
1.18e-24 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 97.18 E-value: 1.18e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 6 LEIKNLELRYGTAVAvrNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGED-TTSLSADRKVArglvM 84
Cdd:cd03298 1 VRLDKIRFSYGEQPM--HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDvTAAPPADRPVS----M 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 85 VPEGRLLFPDQTVEDNLVLGayLQGGIK-SPKSRSSLEKVLALFPrLKERLHQQAGSMSGGEQQMLAIARGLMAEPELLI 163
Cdd:cd03298 75 LFQENNLFAHLTVEQNVGLG--LSPGLKlTAEDRQAIEVALARVG-LAGLEKRLPGELSGGERQRVALARVLVRDKPVLL 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 164 IDELSLGLAPKIVDQLMG-VLTMLNKEGLTILLVEQLASYALAIADYGFVVANGKIAREG 222
Cdd:cd03298 152 LDEPFAALDPALRAEMLDlVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
5-233 |
1.19e-24 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 98.68 E-value: 1.19e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 5 LLEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSADR--KVARGL 82
Cdd:PRK11831 7 LVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRlyTVRKRM 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 83 VMVPEGRLLFPDQTVEDNLVLGAYLQGGIKSPKSRSS----LEKVlalfpRLKERLHQQAGSMSGGEQQMLAIARGLMAE 158
Cdd:PRK11831 87 SMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTvmmkLEAV-----GLRGAAKLMPSELSGGMARRAALARAIALE 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 159 PELLIIDELSLGLAPKIvdqlMGVLTMLNKE-----GLTILLVEQLASYALAIADYGFVVANGKIAREGPSTAL--SSDP 231
Cdd:PRK11831 162 PDLIMFDEPFVGQDPIT----MGVLVKLISElnsalGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALqaNPDP 237
|
..
gi 492878293 232 EV 233
Cdd:PRK11831 238 RV 239
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
5-234 |
1.31e-24 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 98.72 E-value: 1.31e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 5 LLEIKNLELRYGTAV-AVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSAdRKVAR--G 81
Cdd:PRK13652 3 LIETRDLCYSYSGSKeALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENI-REVRKfvG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 82 LVMV-PEGRLLFPdqTVEDNLVLGAyLQGGIKSPKSRSSLEKVLALFPrLKERLHQQAGSMSGGEQQMLAIARGLMAEPE 160
Cdd:PRK13652 82 LVFQnPDDQIFSP--TVEQDIAFGP-INLGLDEETVAHRVSSALHMLG-LEELRDRVPHHLSGGEKKRVAIAGVIAMEPQ 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 492878293 161 LLIIDELSLGLAPKIVDQLMGVLTMLNKE-GLTILLVEQLASYALAIADYGFVVANGKIAREGPSTALSSDPEVM 234
Cdd:PRK13652 158 VLVLDEPTAGLDPQGVKELIDFLNDLPETyGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQPDLL 232
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
5-240 |
1.33e-24 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 98.04 E-value: 1.33e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 5 LLEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSADRKVARGLVM 84
Cdd:PRK10895 3 TLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGY 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 85 VPEGRLLFPDQTVEDNLVLGAYLQGGIKSPKSRSSLEKVLALF--PRLKERLHQqagSMSGGEQQMLAIARGLMAEPELL 162
Cdd:PRK10895 83 LPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFhiEHLRDSMGQ---SLSGGERRRVEIARALAANPKFI 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 492878293 163 IIDELSLGLAPKIVDQLMGVLTMLNKEGLTILLVEQLASYALAIADYGFVVANGKIAREGPSTALSSDPEVMEAFLGK 240
Cdd:PRK10895 160 LLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQDEHVKRVYLGE 237
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
1-232 |
1.34e-24 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 98.50 E-value: 1.34e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 1 MSDVLLEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLS------- 73
Cdd:PRK10619 1 MSENKLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRdkdgqlk 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 74 -ADRKVAR----GLVMVPEGRLLFPDQTVEDNLVLGAYLQGGIKSPKSRSSLEKVLALFPrLKERLHQQAGS-MSGGEQQ 147
Cdd:PRK10619 81 vADKNQLRllrtRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVG-IDERAQGKYPVhLSGGQQQ 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 148 MLAIARGLMAEPELLIIDELSLGLAPKIVDQLMGVLTMLNKEGLTILLVEQLASYALAIADYGFVVANGKIAREGPSTAL 227
Cdd:PRK10619 160 RVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQL 239
|
....*
gi 492878293 228 SSDPE 232
Cdd:PRK10619 240 FGNPQ 244
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
6-237 |
1.56e-24 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 98.94 E-value: 1.56e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 6 LEIKNLELRY--GTAVAVR---NISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFrGEDTTSLSADRKVAR 80
Cdd:PRK13634 3 ITFQKVEHRYqyKTPFERRalyDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTI-GERVITAGKKNKKLK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 81 ------GLVM-VPEGRLLfpDQTVEDNLVLGAyLQGGIKSPKSRSSLEKVLALFPRLKERLHQQAGSMSGGEQQMLAIAR 153
Cdd:PRK13634 82 plrkkvGIVFqFPEHQLF--EETVEKDICFGP-MNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAG 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 154 GLMAEPELLIIDELSLGLAPKIVDQLMGVLTMLNKE-GLTILLVEQLASYALAIADYGFVVANGKIAREGPSTALSSDPE 232
Cdd:PRK13634 159 VLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEkGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFADPD 238
|
....*
gi 492878293 233 VMEAF 237
Cdd:PRK13634 239 ELEAI 243
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
1-201 |
2.75e-24 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 96.73 E-value: 2.75e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 1 MSDVLLEIKNLELRYGTA----VAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSAD- 75
Cdd:COG4181 4 SSAPIIELRGLTKTVGTGagelTILKGISLEVEAGESVAIVGASGSGKSTLLGLLAGLDRPTSGTVRLAGQDLFALDEDa 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 76 RKVARGlvmvpeGRL--------LFPDQTVEDNLVLGAYLQGGiKSPKSRSS--LEKVlalfpRLKERLHQQAGSMSGGE 145
Cdd:COG4181 84 RARLRA------RHVgfvfqsfqLLPTLTALENVMLPLELAGR-RDARARARalLERV-----GLGHRLDHYPAQLSGGE 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 492878293 146 QQMLAIARGLMAEPELLIIDELSLGL----APKIVDQLMGvltmLNKE-GLTILLV---EQLAS 201
Cdd:COG4181 152 QQRVALARAFATEPAILFADEPTGNLdaatGEQIIDLLFE----LNRErGTTLVLVthdPALAA 211
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
6-218 |
5.37e-24 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 96.67 E-value: 5.37e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 6 LEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFfrgEDTTSLSADRKVARglVMV 85
Cdd:PRK11247 13 LLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELL---AGTAPLAEAREDTR--LMF 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 86 PEGRLLfPDQTVEDNLVLGayLQGGIKsPKSRSSLEKVlalfpRLKERLHQQAGSMSGGEQQMLAIARGLMAEPELLIID 165
Cdd:PRK11247 88 QDARLL-PWKKVIDNVGLG--LKGQWR-DAALQALAAV-----GLADRANEWPAALSGGQKQRVALARALIHRPGLLLLD 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 492878293 166 ElSLGLAPKIVDQLMGVL--TMLNKEGLTILLVEQLASYALAIADYGFVVANGKI 218
Cdd:PRK11247 159 E-PLGALDALTRIEMQDLieSLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKI 212
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
2-229 |
5.72e-24 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 100.22 E-value: 5.72e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 2 SDVLLEIKNLELRY-GTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSADRkVAR 80
Cdd:COG4988 333 GPPSIELEDVSFSYpGGRPALDGLSLTIPPGERVALVGPSGAGKSTLLNLLLGFLPPYSGSILINGVDLSDLDPAS-WRR 411
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 81 GLVMVPEGRLLFPDqTVEDNLVLG------AYLQGGIKspksRSSLEKVLALFPR-LKERLHQQAGSMSGGEQQMLAIAR 153
Cdd:COG4988 412 QIAWVPQNPYLFAG-TIRENLRLGrpdasdEELEAALE----AAGLDEFVAALPDgLDTPLGEGGRGLSGGQAQRLALAR 486
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 492878293 154 GLMAEPELLIIDELSLGLAPKIVDQLMGVLTMLNKEGLTILLVEQLAsyALAIADYGFVVANGKIAREGPSTALSS 229
Cdd:COG4988 487 ALLRDAPLLLLDEPTAHLDAETEAEILQALRRLAKGRTVILITHRLA--LLAQADRILVLDDGRIVEQGTHEELLA 560
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
1-239 |
6.84e-24 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 98.23 E-value: 6.84e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 1 MSdvlLEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSA-DRKVa 79
Cdd:PRK10851 1 MS---IEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHArDRKV- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 80 rGLVMvpEGRLLFPDQTVEDNLVLGAYLQGGIKSPKSRSSLEKVLAL-----FPRLKERLHQQagsMSGGEQQMLAIARG 154
Cdd:PRK10851 77 -GFVF--QHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLlemvqLAHLADRYPAQ---LSGGQKQRVALARA 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 155 LMAEPELLIIDELSLGLAPKIVDQLMGVLTMLNKE-GLTILLVEQLASYALAIADYGFVVANGKIAREGPSTALSSDPE- 232
Cdd:PRK10851 151 LAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEElKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREPAt 230
|
....*....
gi 492878293 233 --VMEaFLG 239
Cdd:PRK10851 231 rfVLE-FMG 238
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
6-232 |
1.04e-23 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 95.68 E-value: 1.04e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 6 LEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPS-----SGKVFFRGEDTTSLSADR-KVA 79
Cdd:PRK14267 5 IETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNeearvEGEVRLFGRNIYSPDVDPiEVR 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 80 RGLVMVPEGRLLFPDQTVEDNLVLGAYLQGGIKSPKS-----RSSLEKVlALFPRLKERLHQQAGSMSGGEQQMLAIARG 154
Cdd:PRK14267 85 REVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKEldervEWALKKA-ALWDEVKDRLNDYPSNLSGGQRQRLVIARA 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 492878293 155 LMAEPELLIIDELSLGLAPKIVDQLMGVLTMLNKEgLTILLVEQLASYALAIADYGFVVANGKIAREGPSTALSSDPE 232
Cdd:PRK14267 164 LAMKPKILLMDEPTANIDPVGTAKIEELLFELKKE-YTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVFENPE 240
|
|
| ArtP |
COG4161 |
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]; |
6-229 |
1.06e-23 |
|
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 95.46 E-value: 1.06e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 6 LEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKV-----FFRGEDTTSLSADRKVAR 80
Cdd:COG4161 3 IQLKNINCFYGSHQALFDINLECPSGETLVLLGPSGAGKSSLLRVLNLLETPDSGQLniaghQFDFSQKPSEKAIRLLRQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 81 GLVMVPEGRLLFPDQTVEDNLVLGAYLQGGIKSPKSRSSLEKVLALFpRLKERLHQQAGSMSGGEQQMLAIARGLMAEPE 160
Cdd:COG4161 83 KVGMVFQQYNLWPHLTVMENLIEAPCKVLGLSKEQAREKAMKLLARL-RLTDKADRFPLHLSGGQQQRVAIARALMMEPQ 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 492878293 161 LLIIDELSLGLAPKIVDQLMGVLTMLNKEGLTILLVEQLASYALAIADYGFVVANGKIAREGPSTALSS 229
Cdd:COG4161 162 VLLFDEPTAALDPEITAQVVEIIRELSQTGITQVIVTHEVEFARKVASQVVYMEKGRIIEQGDASHFTQ 230
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
2-209 |
2.15e-23 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 95.23 E-value: 2.15e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 2 SDVLLEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGL--VRPS---SGKVFFRGEDTTSLSADR 76
Cdd:PRK14243 7 TETVLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLndLIPGfrvEGKVTFHGKNLYAPDVDP 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 77 -KVARGLVMVPEGRLLFPdQTVEDNLVLGAYLQG--GIKSPKSRSSLEKVlALFPRLKERLHQQAGSMSGGEQQMLAIAR 153
Cdd:PRK14243 87 vEVRRRIGMVFQKPNPFP-KSIYDNIAYGARINGykGDMDELVERSLRQA-ALWDEVKDKLKQSGLSLSGGQQQRLCIAR 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 492878293 154 GLMAEPELLIIDELSLGLAP---KIVDQLMGVLtmlnKEGLTILLVEQLASYALAIADY 209
Cdd:PRK14243 165 AIAVQPEVILMDEPCSALDPistLRIEELMHEL----KEQYTIIIVTHNMQQAARVSDM 219
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
1-223 |
4.15e-23 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 96.05 E-value: 4.15e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 1 MSDVLLEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSadRKVAR 80
Cdd:PRK13536 37 MSTVAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA--RLARA 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 81 GLVMVPEGRLLFPDQTVEDNL-VLGAYLqgGIKSPKSRSSLEKVLAlFPRLKERLHQQAGSMSGGEQQMLAIARGLMAEP 159
Cdd:PRK13536 115 RIGVVPQFDNLDLEFTVRENLlVFGRYF--GMSTREIEAVIPSLLE-FARLESKADARVSDLSGGMKRRLTLARALINDP 191
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 492878293 160 ELLIIDELSLGLAPKIVDQLMGVLTMLNKEGLTILLVEQLASYALAIADYGFVVANG-KIAREGP 223
Cdd:PRK13536 192 QLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGrKIAEGRP 256
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
6-240 |
7.07e-23 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 93.66 E-value: 7.07e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 6 LEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFrGE---DTT-SLSADRKVARG 81
Cdd:PRK11264 4 IEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRV-GDitiDTArSLSQQKGLIRQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 82 LV----MVPEGRLLFPDQTVEDNLVLGAYLQGGIK----SPKSRSSLEKV-LA----LFPRlkeRLhqqagsmSGGEQQM 148
Cdd:PRK11264 83 LRqhvgFVFQNFNLFPHRTVLENIIEGPVIVKGEPkeeaTARARELLAKVgLAgketSYPR---RL-------SGGQQQR 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 149 LAIARGLMAEPELLIIDELSLGLAPKIVDQLMGVLTMLNKEGLTILLVEQLASYALAIADYGFVVANGKIAREGPSTALS 228
Cdd:PRK11264 153 VAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALF 232
|
250
....*....|....
gi 492878293 229 SDP--EVMEAFLGK 240
Cdd:PRK11264 233 ADPqqPRTRQFLEK 246
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
6-217 |
7.19e-23 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 91.29 E-value: 7.19e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 6 LEIKNLELRYGT--AVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLsaDRKVARGLV 83
Cdd:cd03228 1 IEFKNVSFSYPGrpKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDL--DLESLRKNI 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 84 -MVPEGRLLFPDqTVEDNLvlgaylqggikspksrsslekvlalfprlkerlhqqagsMSGGEQQMLAIARGLMAEPELL 162
Cdd:cd03228 79 aYVPQDPFLFSG-TIRENI---------------------------------------LSGGQRQRIAIARALLRDPPIL 118
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 492878293 163 IIDELSLGLAPKIVDQLMGVLTMLNKEGLTILLVEQLASyaLAIADYGFVVANGK 217
Cdd:cd03228 119 ILDEATSALDPETEALILEALRALAKGKTVIVIAHRLST--IRDADRIIVLDDGR 171
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
6-227 |
7.91e-23 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 96.83 E-value: 7.91e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 6 LEIKNLELRYG--TAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSADRkVARGLV 83
Cdd:COG2274 474 IELENVSFRYPgdSPPVLDNISLTIKPGERVAIVGRSGSGKSTLLKLLLGLYEPTSGRILIDGIDLRQIDPAS-LRRQIG 552
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 84 MVPEGRLLFPDqTVEDNLVLGAylqggikspkSRSSLEKVLA---------LFPRLKERLHQQAGSM----SGGEQQMLA 150
Cdd:COG2274 553 VVLQDVFLFSG-TIRENITLGD----------PDATDEEIIEaarlaglhdFIEALPMGYDTVVGEGgsnlSGGQRQRLA 621
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 492878293 151 IARGLMAEPELLIIDELSLGLAPKIVDQLMGVLTMLNKeGLTILLVEQLASyALAIADYGFVVANGKIAREGPSTAL 227
Cdd:COG2274 622 IARALLRNPRILILDEATSALDAETEAIILENLRRLLK-GRTVIIIAHRLS-TIRLADRIIVLDKGRIVEDGTHEEL 696
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
5-230 |
8.28e-23 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 95.67 E-value: 8.28e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 5 LLEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDttsLSADRKVARGLVM 84
Cdd:PRK11607 19 LLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVD---LSHVPPYQRPINM 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 85 VPEGRLLFPDQTVEDNLVLGAYlQGGIKSPKSRSSLEKVLALFpRLKERLHQQAGSMSGGEQQMLAIARGLMAEPELLII 164
Cdd:PRK11607 96 MFQSYALFPHMTVEQNIAFGLK-QDKLPKAEIASRVNEMLGLV-HMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLL 173
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 492878293 165 DELSLGLAPKIVDQL-MGVLTMLNKEGLTILLVEQLASYALAIADYGFVVANGKIAR--------EGPSTALSSD 230
Cdd:PRK11607 174 DEPMGALDKKLRDRMqLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQigepeeiyEHPTTRYSAE 248
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
3-163 |
8.95e-23 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 96.25 E-value: 8.95e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 3 DVLLEIKNLELR-YGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSADRKVARG 81
Cdd:COG3845 255 EVVLEVENLSVRdDRGVPALKDVSLEVRAGEILGIAGVAGNGQSELAEALAGLRPPASGSIRLDGEDITGLSPRERRRLG 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 82 LVMVPEGRL---LFPDQTVEDNLVLGAYLQ------GGIKSPKSRSSLEKVLALFPRLKERLHQQAGSMSGGEQQMLAIA 152
Cdd:COG3845 335 VAYIPEDRLgrgLVPDMSVAENLILGRYRRppfsrgGFLDRKAIRAFAEELIEEFDVRTPGPDTPARSLSGGNQQKVILA 414
|
170
....*....|.
gi 492878293 153 RGLMAEPELLI 163
Cdd:COG3845 415 RELSRDPKLLI 425
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
3-219 |
8.99e-23 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 93.23 E-value: 8.99e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 3 DVLLEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSG---KVF---FRGEDTTSLsadR 76
Cdd:COG1119 1 DPLLELRNVTVRRGGKTILDDISWTVKPGEHWAILGPNGAGKSTLLSLITGDLPPTYGndvRLFgerRGGEDVWEL---R 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 77 KvaR-GLVMvPEGRLLFP-DQTVEDNLVLGAYlqGGIK-----SPKSRSSLEKVLALFpRLKERLHQQAGSMSGGEQQML 149
Cdd:COG1119 78 K--RiGLVS-PALQLRFPrDETVLDVVLSGFF--DSIGlyrepTDEQRERARELLELL-GLAHLADRPFGTLSQGEQRRV 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 492878293 150 AIARGLMAEPELLIIDELSLGLAPKIVDQLMGVLTMLNKEG-LTILLV-----EQLASY--ALAIADyGFVVANGKIA 219
Cdd:COG1119 152 LIARALVKDPELLILDEPTAGLDLGARELLLALLDKLAAEGaPTLVLVthhveEIPPGIthVLLLKD-GRVVAAGPKE 228
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
6-235 |
1.21e-22 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 93.57 E-value: 1.21e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 6 LEIKNLELRY--GT---AVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSADRKVAR 80
Cdd:PRK13637 3 IKIENLTHIYmeGTpfeKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 81 ---GLVM-VPEGRLLfpDQTVEDNLVLGAY---LQGGIKSPKSRSSLEKVLALFPRLKERlhqQAGSMSGGEQQMLAIAR 153
Cdd:PRK13637 83 kkvGLVFqYPEYQLF--EETIEKDIAFGPInlgLSEEEIENRVKRAMNIVGLDYEDYKDK---SPFELSGGQKRRVAIAG 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 154 GLMAEPELLIIDELSLGLAPKIVDQLMGVLTMLNKE-GLTILLVEQLASYALAIADYGFVVANGKIAREGPSTALSSDPE 232
Cdd:PRK13637 158 VVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEyNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFKEVE 237
|
...
gi 492878293 233 VME 235
Cdd:PRK13637 238 TLE 240
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
1-234 |
1.39e-22 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 93.37 E-value: 1.39e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 1 MSDVLLEIKNLELRY--GTAvAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGE----DTTSLSA 74
Cdd:PRK13636 1 MEDYILKVEELNYNYsdGTH-ALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKpidySRKGLMK 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 75 DRKvARGLVMVPEGRLLFPDQTVEDnLVLGAyLQGGIKSPKSRSSLEKVLAL--FPRLKerlHQQAGSMSGGEQQMLAIA 152
Cdd:PRK13636 80 LRE-SVGMVFQDPDNQLFSASVYQD-VSFGA-VNLKLPEDEVRKRVDNALKRtgIEHLK---DKPTHCLSFGQKKRVAIA 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 153 RGLMAEPELLIIDELSLGLAPKIVDQLMGVLTMLNKE-GLTILLVEQLASYALAIADYGFVVANGKIAREGPSTALSSDP 231
Cdd:PRK13636 154 GVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKElGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEK 233
|
...
gi 492878293 232 EVM 234
Cdd:PRK13636 234 EML 236
|
|
| AppF |
COG4608 |
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]; ... |
1-166 |
1.73e-22 |
|
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443658 [Multi-domain] Cd Length: 329 Bit Score: 94.03 E-value: 1.73e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 1 MSDVLLEIKNLELRY-----------GTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDT 69
Cdd:COG4608 3 MAEPLLEVRDLKKHFpvrgglfgrtvGVVKAVDGVSFDIRRGETLGLVGESGCGKSTLGRLLLRLEEPTSGEILFDGQDI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 70 TSLSAD--RKVARGLVMV---PEGRLlFPDQTVEDnlVLGAYLQ-GGIKSPKSRssLEKVLALF------PRLKERL-HQ 136
Cdd:COG4608 83 TGLSGRelRPLRRRMQMVfqdPYASL-NPRMTVGD--IIAEPLRiHGLASKAER--RERVAELLelvglrPEHADRYpHE 157
|
170 180 190
....*....|....*....|....*....|
gi 492878293 137 qagsMSGGEQQMLAIARGLMAEPELLIIDE 166
Cdd:COG4608 158 ----FSGGQRQRIGIARALALNPKLIVCDE 183
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
1-223 |
6.77e-22 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 91.62 E-value: 6.77e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 1 MSDVLLEIKNLELRY--GTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRG---EDTTSLSAD 75
Cdd:PRK13635 1 MKEEIIRVEHISFRYpdAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGmvlSEETVWDVR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 76 RKVArglvMV---PEGRllFPDQTVEDNLVLGAYLQGGIKS---PKSRSSLEKVlalfpRLKERLHQQAGSMSGGEQQML 149
Cdd:PRK13635 81 RQVG----MVfqnPDNQ--FVGATVQDDVAFGLENIGVPREemvERVDQALRQV-----GMEDFLNREPHRLSGGQKQRV 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 492878293 150 AIARGLMAEPELLIIDELSLGLAPKIVDQLMGVLTMLNKE-GLTILLV----EQLASyalaiADYGFVVANGKIAREGP 223
Cdd:PRK13635 150 AIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQkGITVLSIthdlDEAAQ-----ADRVIVMNKGEILEEGT 223
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
4-236 |
7.69e-22 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 90.99 E-value: 7.69e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 4 VLLEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSAdRKVARGLV 83
Cdd:PRK13548 1 AMLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSP-AELARRRA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 84 MVPE-GRLLFPdQTVEDNLVLGAYlQGGIKSPKSRSSLEKVLAL--FPRLKERLHQQagsMSGGEQQMLAIARGLM---- 156
Cdd:PRK13548 80 VLPQhSSLSFP-FTVEEVVAMGRA-PHGLSRAEDDALVAAALAQvdLAHLAGRDYPQ---LSGGEQQRVQLARVLAqlwe 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 157 --AEPELLIIDE--LSLGLAPKIvdQLMGVLTML-NKEGLTILLVeqLASYALAI--ADYGFVVANGKIAREG-PSTALS 228
Cdd:PRK13548 155 pdGPPRWLLLDEptSALDLAHQH--HVLRLARQLaHERGLAVIVV--LHDLNLAAryADRIVLLHQGRLVADGtPAEVLT 230
|
....*...
gi 492878293 229 sdPEVMEA 236
Cdd:PRK13548 231 --PETLRR 236
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
20-244 |
1.29e-21 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 90.96 E-value: 1.29e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 20 AVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSADRKVAR-----GLVM-VPEGRLLfp 93
Cdd:PRK13649 22 ALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQirkkvGLVFqFPESQLF-- 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 94 DQTVEDNLVLGAYLQGGIKSPKSRSSLEKvLALFPRLKERLHQQAGSMSGGEQQMLAIARGLMAEPELLIIDELSLGLAP 173
Cdd:PRK13649 100 EETVLKDVAFGPQNFGVSQEEAEALAREK-LALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDP 178
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 492878293 174 KIVDQLMGVLTMLNKEGLTILLVEQLASYALAIADYGFVVANGKIAREGPSTALSSDPEVMEAF-LGKKKST 244
Cdd:PRK13649 179 KGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQDVDFLEEKqLGVPKIT 250
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
20-244 |
1.86e-21 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 90.56 E-value: 1.86e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 20 AVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSADRKVAR-----GLVM-VPEGRLLfp 93
Cdd:PRK13643 21 ALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPvrkkvGVVFqFPESQLF-- 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 94 DQTVEDNLVLGAYLQGGIKSPKSRSSLEKvLALFPRLKERLHQQAGSMSGGEQQMLAIARGLMAEPELLIIDELSLGLAP 173
Cdd:PRK13643 99 EETVLKDVAFGPQNFGIPKEKAEKIAAEK-LEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDP 177
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 492878293 174 KIVDQLMGVLTMLNKEGLTILLVEQLASYALAIADYGFVVANGKIAREGPSTALSSDPEVMEAF-LGKKKST 244
Cdd:PRK13643 178 KARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQEVDFLKAHeLGVPKAT 249
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
14-216 |
1.88e-21 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 89.31 E-value: 1.88e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 14 RYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSaDRKVAR-GLVMVPEGRLLF 92
Cdd:cd03267 30 KYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRR-KKFLRRiGVVFGQKTQLWW 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 93 pDQTVEDNLVLGAYLQgGIKSPKSRSSLEKVLALFpRLKERLHQQAGSMSGGEQQMLAIARGLMAEPELLIIDELSLGLa 172
Cdd:cd03267 109 -DLPVIDSFYLLAAIY-DLPPARFKKRLDELSELL-DLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGL- 184
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 492878293 173 pKIVDQ--LMGVLTMLNKE-GLTILL-------VEQLASYALAIaDYGFVVANG 216
Cdd:cd03267 185 -DVVAQenIRNFLKEYNRErGTTVLLtshymkdIEALARRVLVI-DKGRLLYDG 236
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
1-196 |
2.14e-21 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 89.10 E-value: 2.14e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 1 MSDVLLEIKNLELRY-----GTAVaVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSAD 75
Cdd:PRK11629 1 MNKILLQCDNLCKRYqegsvQTDV-LHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 76 RKVA---RGLVMVPEGRLLFPDQTVEDNLVLgAYLQGGIKSPKSRSSLEKVLALFPrLKERLHQQAGSMSGGEQQMLAIA 152
Cdd:PRK11629 80 AKAElrnQKLGFIYQFHHLLPDFTALENVAM-PLLIGKKKPAEINSRALEMLAAVG-LEHRANHRPSELSGGERQRVAIA 157
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 492878293 153 RGLMAEPELLIIDELSLGLAPKIVDQLMGVLTMLNKEGLTILLV 196
Cdd:PRK11629 158 RALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLV 201
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
1-235 |
4.41e-21 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 88.68 E-value: 4.41e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 1 MSDVLLEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGAT--GLVRPS---SGKVFFRGEDTTSLSAD 75
Cdd:PRK14239 1 MTEPILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINrmNDLNPEvtiTGSIVYNGHNIYSPRTD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 76 RKVARGLV-MVPEGRLLFPdQTVEDNLVLGAYLQGGIKSPKSRSSLEKVL---ALFPRLKERLHQQAGSMSGGEQQMLAI 151
Cdd:PRK14239 81 TVDLRKEIgMVFQQPNPFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLkgaSIWDEVKDRLHDSALGLSGGQQQRVCI 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 152 ARGLMAEPELLIIDELSLGLAP----KIVDQLMGVltmlnKEGLTILLVEQLASYALAIADYGFVVANGKIAREGPSTAL 227
Cdd:PRK14239 160 ARVLATSPKIILLDEPTSALDPisagKIEETLLGL-----KDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQM 234
|
....*...
gi 492878293 228 SSDPEVME 235
Cdd:PRK14239 235 FMNPKHKE 242
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
3-235 |
5.42e-21 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 89.91 E-value: 5.42e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 3 DVLLEIKNLELRYGTA-----VAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVF---------FRGED 68
Cdd:PRK13631 19 DIILRVKNLYCVFDEKqenelVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQvgdiyigdkKNNHE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 69 TTSLSADRKVA------RGLVMV---PEGRLlFPDqTVEDNLVLGAyLQGGIKSPKSRSSLEKVLALFPRLKERLHQQAG 139
Cdd:PRK13631 99 LITNPYSKKIKnfkelrRRVSMVfqfPEYQL-FKD-TIEKDIMFGP-VALGVKKSEAKKLAKFYLNKMGLDDSYLERSPF 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 140 SMSGGEQQMLAIARGLMAEPELLIIDELSLGLAPKIVDQLMGVLTMLNKEGLTILLVEQLASYALAIADYGFVVANGKIA 219
Cdd:PRK13631 176 GLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKIL 255
|
250
....*....|....*.
gi 492878293 220 REGPSTALSSDPEVME 235
Cdd:PRK13631 256 KTGTPYEIFTDQHIIN 271
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
21-222 |
8.68e-21 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 87.52 E-value: 8.68e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 21 VRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSADRKVarglvmVPEGRLLFPDQTVEDN 100
Cdd:TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMV------VFQNYSLLPWLTVREN 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 101 LVLGA-YLQGGIKSPKSRSSLEKVLALFpRLKERLHQQAGSMSGGEQQMLAIARGLMAEPELLIIDE----LSLGLAPKI 175
Cdd:TIGR01184 75 IALAVdRVLPDLSKSERRAIVEEHIALV-GLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEpfgaLDALTRGNL 153
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 492878293 176 VDQLMGVltmLNKEGLTILLVEQLASYALAIADYGFVVANGKIAREG 222
Cdd:TIGR01184 154 QEELMQI---WEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIG 197
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
1-223 |
9.18e-21 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 89.62 E-value: 9.18e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 1 MSDVLLEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSADRkvaR 80
Cdd:PRK09452 10 SLSPLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAEN---R 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 81 GLVMVPEGRLLFPDQTVEDNLVLGAYLQggiKSPKS--RSSLEKVLALFpRLKERLHQQAGSMSGGEQQMLAIARGLMAE 158
Cdd:PRK09452 87 HVNTVFQSYALFPHMTVFENVAFGLRMQ---KTPAAeiTPRVMEALRMV-QLEEFAQRKPHQLSGGQQQRVAIARAVVNK 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 492878293 159 PELLIIDE-LSlGLAPKIVDQLMGVLTMLNKE-GLTILLVEQLASYALAIADYGFVVANGKIAREGP 223
Cdd:PRK09452 163 PKVLLLDEsLS-ALDYKLRKQMQNELKALQRKlGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGT 228
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
25-239 |
1.23e-20 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 86.94 E-value: 1.23e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 25 SISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSADRkvaRGLVMVPEGRLLFPDQTVEDNLVLG 104
Cdd:PRK10771 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSR---RPVSMLFQENNLFSHLTVAQNIGLG 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 105 ayLQGGIK-SPKSRSSLEKVL------ALFPRLkerlhqqAGSMSGGEQQMLAIARGLMAEPELLIIDELSLGLAPKIVD 177
Cdd:PRK10771 96 --LNPGLKlNAAQREKLHAIArqmgieDLLARL-------PGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQ 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 492878293 178 QLMGVL-TMLNKEGLTILLVEQLASYALAIADYGFVVANGKIAREGPSTALSSDPEVMEAFLG 239
Cdd:PRK10771 167 EMLTLVsQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSGKASASALLG 229
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
2-227 |
2.24e-20 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 89.83 E-value: 2.24e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 2 SDVLLEIKNLELRY--GTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSADRkVA 79
Cdd:COG4987 330 GGPSLELEDVSFRYpgAGRPVLDGLSLTLPPGERVAIVGPSGSGKSTLLALLLRFLDPQSGSITLGGVDLRDLDEDD-LR 408
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 80 RGLVMVPEGRLLFpDQTVEDNLVLGAylqggiksPKS-----RSSLEKV--LALFPRLKERLHQQAGS----MSGGEQQM 148
Cdd:COG4987 409 RRIAVVPQRPHLF-DTTLRENLRLAR--------PDAtdeelWAALERVglGDWLAALPDGLDTWLGEggrrLSGGERRR 479
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 492878293 149 LAIARGLMAEPELLIIDELSLGLAPKIVDQLMGVLTMLNKEGLTILLVEQLAsyALAIADYGFVVANGKIAREGPSTAL 227
Cdd:COG4987 480 LALARALLRDAPILLLDEPTEGLDAATEQALLADLLEALAGRTVLLITHRLA--GLERMDRILVLEDGRIVEQGTHEEL 556
|
|
| nickel_nikE |
TIGR02769 |
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a ... |
5-229 |
2.39e-20 |
|
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131816 [Multi-domain] Cd Length: 265 Bit Score: 87.17 E-value: 2.39e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 5 LLEIKNLELRYGTAVAVR---------NISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSL--S 73
Cdd:TIGR02769 2 LLEVRDVTHTYRTGGLFGakqrapvltNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLdrK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 74 ADRKVARGLVMVPEGRL--LFPDQTVEDnlVLGAYLQGGIKSPKSR-----SSLEKVLALFPRLKERLHQQagsMSGGEQ 146
Cdd:TIGR02769 82 QRRAFRRDVQLVFQDSPsaVNPRMTVRQ--IIGEPLRHLTSLDESEqkariAELLDMVGLRSEDADKLPRQ---LSGGQL 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 147 QMLAIARGLMAEPELLIIDELSLGLAPKIVDQLMGVLTMLNKE-GLTILLVEQLASYALAIADYGFVVANGKIAREGPST 225
Cdd:TIGR02769 157 QRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAfGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVA 236
|
....
gi 492878293 226 ALSS 229
Cdd:TIGR02769 237 QLLS 240
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
2-222 |
3.22e-20 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 86.97 E-value: 3.22e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 2 SDVLLEIKNLELRYGTAV--AVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSAdrKVA 79
Cdd:PRK13632 4 KSVMIKVENVSFSYPNSEnnALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENL--KEI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 80 RGLVMVpegrlLF--PDQ-----TVEDNLVLGayLQGGIKSPKSRSSLEKVLALFPRLKERLHQQAGSMSGGEQQMLAIA 152
Cdd:PRK13632 82 RKKIGI-----IFqnPDNqfigaTVEDDIAFG--LENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIA 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 492878293 153 RGLMAEPELLIIDELSLGLAPKIVDQLMGVLTMLNKEGL-TILLVEQLASYALaIADYGFVVANGKIAREG 222
Cdd:PRK13632 155 SVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKkTLISITHDMDEAI-LADKVIVFSEGKLIAQG 224
|
|
| TauB |
COG4525 |
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]; |
6-166 |
3.26e-20 |
|
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 86.45 E-value: 3.26e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 6 LEIKNLELRYG----TAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSADRKVarg 81
Cdd:COG4525 4 LTVRHVSVRYPgggqPQPALQDVSLTIESGEFVVALGASGCGKTTLLNLIAGFLAPSSGEITLDGVPVTGPGADRGV--- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 82 lvmVPEGRLLFPDQTVEDNLVLGAYLQGgIKSPKSRSSLEKVLALFpRLKERLHQQAGSMSGGEQQMLAIARGLMAEPEL 161
Cdd:COG4525 81 ---VFQKDALLPWLNVLDNVAFGLRLRG-VPKAERRARAEELLALV-GLADFARRRIWQLSGGMRQRVGIARALAADPRF 155
|
....*
gi 492878293 162 LIIDE 166
Cdd:COG4525 156 LLMDE 160
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
2-236 |
3.42e-20 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 87.07 E-value: 3.42e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 2 SDVLLEIKNLELRYGTA------VAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSAD 75
Cdd:PRK13633 1 MNEMIKCKNVSYKYESNeestekLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 76 RKVARGLVMV---PEGRLLfpDQTVEDNLVLGAYlQGGIKSPKSRSSLEKVLALFPRLKERLHqQAGSMSGGEQQMLAIA 152
Cdd:PRK13633 81 WDIRNKAGMVfqnPDNQIV--ATIVEEDVAFGPE-NLGIPPEEIRERVDESLKKVGMYEYRRH-APHLLSGGQKQRVAIA 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 153 RGLMAEPELLIIDELSLGLAPKIVDQLMGVLTMLNKE-GLTILLVEQLASYAlAIADYGFVVANGKIAREGPSTALSSDP 231
Cdd:PRK13633 157 GILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKyGITIILITHYMEEA-VEADRIIVMDSGKVVMEGTPKEIFKEV 235
|
....*
gi 492878293 232 EVMEA 236
Cdd:PRK13633 236 EMMKK 240
|
|
| COG4559 |
COG4559 |
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]; |
5-230 |
6.92e-20 |
|
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443620 [Multi-domain] Cd Length: 258 Bit Score: 85.55 E-value: 6.92e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 5 LLEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSADRKVARGLVM 84
Cdd:COG4559 1 MLEAENLSVRLGGRTLLDDVSLTLRPGELTAIIGPNGAGKSTLLKLLTGELTPSSGEVRLNGRPLAAWSPWELARRRAVL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 85 VPEGRLLFPdQTVEDNLVLGAYlQGGIKSPKSRSSLEKVLALF--PRLKERLHQQagsMSGGEQQMLAIARGL------- 155
Cdd:COG4559 81 PQHSSLAFP-FTVEEVVALGRA-PHGSSAAQDRQIVREALALVglAHLAGRSYQT---LSGGEQQRVQLARVLaqlwepv 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 156 MAEPELLIIDE--LSLGLAPKIvdQLMGVLTMLNKEGLTILLVE---QLASyalAIADYGFVVANGKIAREG-PSTALSS 229
Cdd:COG4559 156 DGGPRWLFLDEptSALDLAHQH--AVLRLARQLARRGGGVVAVLhdlNLAA---QYADRILLLHQGRLVAQGtPEEVLTD 230
|
.
gi 492878293 230 D 230
Cdd:COG4559 231 E 231
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
7-222 |
8.89e-20 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 84.58 E-value: 8.89e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 7 EIKNLELRY-GTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSadRKVARGLV-M 84
Cdd:cd03254 4 EFENVNFSYdEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDIS--RKSLRSMIgV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 85 VPEGRLLFPDqTVEDNLVLGaylqggikSPKSRSSLEKVLA-------LFPRLKERLHQQAG----SMSGGEQQMLAIAR 153
Cdd:cd03254 82 VLQDTFLFSG-TIMENIRLG--------RPNATDEEVIEAAkeagahdFIMKLPNGYDTVLGenggNLSQGERQLLAIAR 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 492878293 154 GLMAEPELLIIDELSLGLAP---KIVDQLMGVLtmlnKEGLTILLVeqlaSYALAI---ADYGFVVANGKIAREG 222
Cdd:cd03254 153 AMLRDPKILILDEATSNIDTeteKLIQEALEKL----MKGRTSIII----AHRLSTiknADKILVLDDGKIIEEG 219
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
3-241 |
1.08e-19 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 87.37 E-value: 1.08e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 3 DVLLEIKNLelrygTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSADRKVARGL 82
Cdd:PRK10762 255 EVRLKVDNL-----SGPGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGI 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 83 VMVPEGRL---LFPDQTVEDNLVLGA-----YLQGGIKSPKSRSSLEKVLALFPRLKERLHQQAGSMSGGEQQMLAIARG 154
Cdd:PRK10762 330 VYISEDRKrdgLVLGMSVKENMSLTAlryfsRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARG 409
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 155 LMAEPELLIIDELSLGL---APKIVDQLmgvLTMLNKEGLTILLVEQLASYALAIADYGFVVANGKIAREGPstALSSDP 231
Cdd:PRK10762 410 LMTRPKVLILDEPTRGVdvgAKKEIYQL---INQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFT--REQATQ 484
|
250
....*....|.
gi 492878293 232 EV-MEAFLGKK 241
Cdd:PRK10762 485 EKlMAAAVGKL 495
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
3-238 |
1.32e-19 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 85.17 E-value: 1.32e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 3 DVLLEIKNLELRY--GTAvAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSlsADRKVAR 80
Cdd:PRK13647 2 DNIIEVEDLHFRYkdGTK-ALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNA--ENEKWVR 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 81 GLVmvpegRLLFPD-------QTVEDNLVLGAYLQGGIKSPKSRSSLEKVLALfpRLKERLHQQAGSMSGGEQQMLAIAR 153
Cdd:PRK13647 79 SKV-----GLVFQDpddqvfsSTVWDDVAFGPVNMGLDKDEVERRVEEALKAV--RMWDFRDKPPYHLSYGQKKRVAIAG 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 154 GLMAEPELLIIDELSLGLAPKIVDQLMGVLTMLNKEGLTILLVEQLASYALAIADYGFVVANGKIAREGPSTALSSDPEV 233
Cdd:PRK13647 152 VLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLTDEDIV 231
|
....*
gi 492878293 234 MEAFL 238
Cdd:PRK13647 232 EQAGL 236
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
6-209 |
3.88e-19 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 83.93 E-value: 3.88e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 6 LEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSS-----GKVFFRGEDTTSLSAD-RKVA 79
Cdd:PRK14258 8 IKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESevrveGRVEFFNQNIYERRVNlNRLR 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 80 RGLVMVPEGRLLFPdQTVEDNLVLGAYLQGGikSPKSR-----SSLEKVLALFPRLKERLHQQAGSMSGGEQQMLAIARG 154
Cdd:PRK14258 88 RQVSMVHPKPNLFP-MSVYDNVAYGVKIVGW--RPKLEiddivESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARA 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 492878293 155 LMAEPELLIIDELSLGLAPKI---VDQLMGVLTMlnKEGLTILLVEQLASYALAIADY 209
Cdd:PRK14258 165 LAVKPKVLLMDEPCFGLDPIAsmkVESLIQSLRL--RSELTMVIVSHNLHQVSRLSDF 220
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
35-239 |
6.15e-19 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 84.38 E-value: 6.15e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 35 AVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEdtTSLSADRKV-----ARGLVMVP-EGRLlFPDQTVEDNLvlgAYLQ 108
Cdd:COG4148 29 ALFGPSGSGKTTLLRAIAGLERPDSGRIRLGGE--VLQDSARGIflpphRRRIGYVFqEARL-FPHLSVRGNL---LYGR 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 109 GGIKSPKSRSSLEKVLALFpRLKERLHQQAGSMSGGEQQMLAIARGLMAEPELLIIDE-LS-LGLAPKivDQLMGVLTML 186
Cdd:COG4148 103 KRAPRAERRISFDEVVELL-GIGHLLDRRPATLSGGERQRVAIGRALLSSPRLLLMDEpLAaLDLARK--AEILPYLERL 179
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 492878293 187 NKE-GLTILLVeqlaSYALA----IADYGFVVANGKIAREGPSTALSSDPEVMEAFLG 239
Cdd:COG4148 180 RDElDIPILYV----SHSLDevarLADHVVLLEQGRVVASGPLAEVLSRPDLLPLAGG 233
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
31-222 |
9.18e-19 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 81.57 E-value: 9.18e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 31 GQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFrgEDTTSLSADRKV-----ARGLVMVPEGRLLFPDQTVEDNLVLGA 105
Cdd:cd03297 23 EEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVL--NGTVLFDSRKKInlppqQRKIGLVFQQYALFPHLNVRENLAFGL 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 106 ylqGGIKSPKSRSSLEKVLALFpRLKERLHQQAGSMSGGEQQMLAIARGLMAEPELLIIDELSLGLAPKIVDQLMGVLTM 185
Cdd:cd03297 101 ---KRKRNREDRISVDELLDLL-GLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQ 176
|
170 180 190
....*....|....*....|....*....|....*...
gi 492878293 186 LNKE-GLTILLVEQLASYALAIADYGFVVANGKIAREG 222
Cdd:cd03297 177 IKKNlNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
|
| MsbA_lipidA |
TIGR02203 |
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide ... |
5-227 |
1.32e-18 |
|
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 131258 [Multi-domain] Cd Length: 571 Bit Score: 84.38 E-value: 1.32e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 5 LLEIKNLELRYG--TAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSAdRKVARGL 82
Cdd:TIGR02203 330 DVEFRNVTFRYPgrDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTL-ASLRRQV 408
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 83 VMVPEGRLLFpDQTVEDNLVLGAylQGGIKSPKSRSSLEKVLA--LFPRLKERLHQQAGS----MSGGEQQMLAIARGLM 156
Cdd:TIGR02203 409 ALVSQDVVLF-NDTIANNIAYGR--TEQADRAEIERALAAAYAqdFVDKLPLGLDTPIGEngvlLSGGQRQRLAIARALL 485
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 492878293 157 AEPELLIIDELSLGLAPKIVDQLMGVLTMLNKEGLTILLVEQLASyaLAIADYGFVVANGKIAREGPSTAL 227
Cdd:TIGR02203 486 KDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLST--IEKADRIVVMDDGRIVERGTHNEL 554
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
14-231 |
2.38e-18 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 83.16 E-value: 2.38e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 14 RYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSAD--RKVAR-GLVMVPEGRL 90
Cdd:PRK10070 37 KTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAelREVRRkKIAMVFQSFA 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 91 LFPDQTVEDNLVLGAYLQGGIKSPKSRSSLEKVLALfpRLKERLHQQAGSMSGGEQQMLAIARGLMAEPELLIIDELSLG 170
Cdd:PRK10070 117 LMPHMTVLDNTAFGMELAGINAEERREKALDALRQV--GLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSA 194
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 492878293 171 LAPKIVDQLMGVLTMLN-KEGLTILLVEQLASYALAIADYGFVVANGKIAREGPSTALSSDP 231
Cdd:PRK10070 195 LDPLIRTEMQDELVKLQaKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNP 256
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
2-171 |
2.98e-18 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 80.53 E-value: 2.98e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 2 SDVLLEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSAD--RKVA 79
Cdd:PRK10247 4 NSPLLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEiyRQQV 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 80 RGLVMVPegrLLFPDqTVEDNLVLGAYLQGGIKSPKsrsSLEKVLALFPRLKERLHQQAGSMSGGEQQMLAIARGLMAEP 159
Cdd:PRK10247 84 SYCAQTP---TLFGD-TVYDNLIFPWQIRNQQPDPA---IFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMP 156
|
170
....*....|..
gi 492878293 160 ELLIIDELSLGL 171
Cdd:PRK10247 157 KVLLLDEITSAL 168
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
6-222 |
3.33e-18 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 80.33 E-value: 3.33e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 6 LEIKNLELRYGTA--VAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLS-ADRKVARGL 82
Cdd:cd03245 3 IEFRNVSFSYPNQeiPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDpADLRRNIGY 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 83 VMvPEGRLLFpdQTVEDNLVLGAYL--QGGIKSPKSRSSLEKVLALFPRLKERLHQQAG-SMSGGEQQMLAIARGLMAEP 159
Cdd:cd03245 83 VP-QDVTLFY--GTLRDNITLGAPLadDERILRAAELAGVTDFVNKHPNGLDLQIGERGrGLSGGQRQAVALARALLNDP 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 492878293 160 ELLIIDE----LSLGLAPKIVDQLMGVLtmlnkEGLTILLVEQLASyALAIADYGFVVANGKIAREG 222
Cdd:cd03245 160 PILLLDEptsaMDMNSEERLKERLRQLL-----GDKTLIIITHRPS-LLDLVDRIIVMDSGRIVADG 220
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
6-238 |
4.14e-18 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 80.83 E-value: 4.14e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 6 LEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSaDRKVARGLVMV 85
Cdd:PRK11231 3 LRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLS-SRQLARRLALL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 86 PEGRLLFPDQTVEDnlvLGAYlqGgiKSPKsrsslekvLALFPRLKERLHQ---QA--------------GSMSGGEQQM 148
Cdd:PRK11231 82 PQHHLTPEGITVRE---LVAY--G--RSPW--------LSLWGRLSAEDNArvnQAmeqtrinhladrrlTDLSGGQRQR 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 149 LAIARGLMAEPELLIIDELS--LGLAPKIvdQLMGVLTMLNKEGLTILLVEQLASYALAIADYGFVVANGKIAREGpsta 226
Cdd:PRK11231 147 AFLAMVLAQDTPVVLLDEPTtyLDINHQV--ELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQG---- 220
|
250
....*....|..
gi 492878293 227 lsSDPEVMEAFL 238
Cdd:PRK11231 221 --TPEEVMTPGL 230
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
5-166 |
5.85e-18 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 80.51 E-value: 5.85e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 5 LLEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSADrkvaRGLVM 84
Cdd:PRK11248 1 MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAE----RGVVF 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 85 VPEGrlLFPDQTVEDNLVLGAYLQgGIKSPKSRSSLEKVLALFPrLKERLHQQAGSMSGGEQQMLAIARGLMAEPELLII 164
Cdd:PRK11248 77 QNEG--LLPWRNVQDNVAFGLQLA-GVEKMQRLEIAHQMLKKVG-LEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLL 152
|
..
gi 492878293 165 DE 166
Cdd:PRK11248 153 DE 154
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
23-235 |
6.33e-18 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 80.64 E-value: 6.33e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 23 NISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSADRKVAR-----GLVM-VPEGRLLfpDQT 96
Cdd:PRK13641 25 NISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKlrkkvSLVFqFPEAQLF--ENT 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 97 VEDNLVLGAyLQGGIKSPKSRSSLEKVLALFPRLKERLHQQAGSMSGGEQQMLAIArGLMA-EPELLIIDELSLGLAPKI 175
Cdd:PRK13641 103 VLKDVEFGP-KNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIA-GVMAyEPEILCLDEPAAGLDPEG 180
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 492878293 176 VDQLMGVLTMLNKEGLTILLV----EQLASYalaiADYGFVVANGKIAREGPSTALSSDPEVME 235
Cdd:PRK13641 181 RKEMMQLFKDYQKAGHTVILVthnmDDVAEY----ADDVLVLEHGKLIKHASPKEIFSDKEWLK 240
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
28-201 |
6.61e-18 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 79.82 E-value: 6.61e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 28 VKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSADRKV---ARGLVMVPEGRLLFPDQTVEDNLVLG 104
Cdd:PRK10584 33 VKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAklrAKHVGFVFQSFMLIPTLNALENVELP 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 105 AYLQGgiksPKSRSSLEKVLALFPR--LKERLHQQAGSMSGGEQQMLAIARGLMAEPELLIIDELSLGLAPKIVDQLMGV 182
Cdd:PRK10584 113 ALLRG----ESSRQSRNGAKALLEQlgLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADL 188
|
170 180
....*....|....*....|...
gi 492878293 183 LTMLNKE-GLTILLV---EQLAS 201
Cdd:PRK10584 189 LFSLNREhGTTLILVthdLQLAA 211
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
19-230 |
7.37e-18 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 80.59 E-value: 7.37e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 19 VAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSAD---RKVARGLVMV---PEGRlLF 92
Cdd:PRK13646 21 QAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDkyiRPVRKRIGMVfqfPESQ-LF 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 93 PDqTVEDNLVLGAY-LQGGIKSPKSRsSLEKVLAL-FPRlkERLHQQAGSMSGGEQQMLAIARGLMAEPELLIIDELSLG 170
Cdd:PRK13646 100 ED-TVEREIIFGPKnFKMNLDEVKNY-AHRLLMDLgFSR--DVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAG 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 492878293 171 LAPKIVDQLMGVLTMLN-KEGLTILLV----EQLASYalaiADYGFVVANGKIAREGPSTALSSD 230
Cdd:PRK13646 176 LDPQSKRQVMRLLKSLQtDENKTIILVshdmNEVARY----ADEVIVMKEGSIVSQTSPKELFKD 236
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
6-166 |
7.68e-18 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 82.13 E-value: 7.68e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 6 LEIKNLELRYGTAVAV-RNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSAD---RKVArg 81
Cdd:COG1132 340 IEFENVSFSYPGDRPVlKDISLTIPPGETVALVGPSGSGKSTLVNLLLRFYDPTSGRILIDGVDIRDLTLEslrRQIG-- 417
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 82 lvMVPEGRLLFPDqTVEDNLVLGaylqggiKSPKSRSSLEKVLAL-----F-PRLKERLHQQAG----SMSGGEQQMLAI 151
Cdd:COG1132 418 --VVPQDTFLFSG-TIRENIRYG-------RPDATDEEVEEAAKAaqaheFiEALPDGYDTVVGergvNLSGGQRQRIAI 487
|
170
....*....|....*
gi 492878293 152 ARGLMAEPELLIIDE 166
Cdd:COG1132 488 ARALLKDPPILILDE 502
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
6-237 |
8.53e-18 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 81.81 E-value: 8.53e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 6 LEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSAdRKVARGLVMV 85
Cdd:PRK09536 4 IDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSA-RAASRRVASV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 86 PEGRLLFPDQTVEDNLVLGaylqggiKSPKsRSSLEKVLALFPRLKERLHQQAG----------SMSGGEQQMLAIARGL 155
Cdd:PRK09536 83 PQDTSLSFEFDVRQVVEMG-------RTPH-RSRFDTWTETDRAAVERAMERTGvaqfadrpvtSLSGGERQRVLLARAL 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 156 MAEPELLIIDELSLGLAPKIVDQLMGVLTMLNKEGLTILLVEQLASYALAIADYGFVVANGKIAREGPSTALSSDPEVME 235
Cdd:PRK09536 155 AQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTADTLRA 234
|
..
gi 492878293 236 AF 237
Cdd:PRK09536 235 AF 236
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
1-230 |
8.55e-18 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 81.90 E-value: 8.55e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 1 MSDVLLEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGlVRPS---SGKVFFRGEDTTSLSADRK 77
Cdd:PRK13549 1 MMEYLLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSG-VYPHgtyEGEIIFEGEELQASNIRDT 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 78 VARGLVMVPEGRLLFPDQTVEDNLVLGAYLqggikSPKSRSSLEKVLALFPRLKERL------HQQAGSMSGGEQQMLAI 151
Cdd:PRK13549 80 ERAGIAIIHQELALVKELSVLENIFLGNEI-----TPGGIMDYDAMYLRAQKLLAQLkldinpATPVGNLGLGQQQLVEI 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 492878293 152 ARGLMAEPELLIIDELSLGLAPKIVDQLMGVLTMLNKEGLTILLVEQLASYALAIADYGFVVANGKIAREGPSTALSSD 230
Cdd:PRK13549 155 AKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMTED 233
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
20-245 |
1.01e-17 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 80.52 E-value: 1.01e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 20 AVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGED-------------TTSLSADRKVARGLVMVP 86
Cdd:PRK13651 22 ALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDeknkkktkekekvLEKLVIQKTRFKKIKKIK 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 87 EGR------------LLFpDQTVEDNLVLGAyLQGGIKSPKSRSSLEKVLALFPRLKERLHQQAGSMSGGEQQMLAIARG 154
Cdd:PRK13651 102 EIRrrvgvvfqfaeyQLF-EQTIEKDIIFGP-VSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGI 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 155 LMAEPELLIIDELSLGLAPKIVDQLMGVLTMLNKEGLTILLVEQLASYALAIADYGFVVANGKIAREGPSTALSSDpevm 234
Cdd:PRK13651 180 LAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDGKIIKDGDTYDILSD---- 255
|
250
....*....|.
gi 492878293 235 EAFLGKKKSTP 245
Cdd:PRK13651 256 NKFLIENNMEP 266
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
1-216 |
1.13e-17 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 81.75 E-value: 1.13e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 1 MSDVLLEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSADRKVAR 80
Cdd:PRK09700 1 MATPYISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 81 GLVMVPEGRLLFPDQTVEDNLVLGAYLQGGI--------KSPKSRSSlekVLALFPRLKERLHQQAGSMSGGEQQMLAIA 152
Cdd:PRK09700 81 GIGIIYQELSVIDELTVLENLYIGRHLTKKVcgvniidwREMRVRAA---MMLLRVGLKVDLDEKVANLSISHKQMLEIA 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 492878293 153 RGLMAEPELLIIDELSLGLAPKIVDQLMGVLTMLNKEGLTILLVEQLASYALAIADYGFVVANG 216
Cdd:PRK09700 158 KTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDG 221
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
1-232 |
1.16e-17 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 81.65 E-value: 1.16e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 1 MSDVLLEIKNLELRYGTA----VAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPS----SGKVFFRGEDTTSL 72
Cdd:COG4172 2 MSMPLLSVEDLSVAFGQGggtvEAVKGVSFDIAAGETLALVGESGSGKSVTALSILRLLPDPaahpSGSILFDGQDLLGL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 73 SAD--RKVaRG--LVMVpegrllF--------PDQTVEDNLVLGAYLQGGIKSPKSRsslEKVLALF-----PRLKERL- 134
Cdd:COG4172 82 SERelRRI-RGnrIAMI------FqepmtslnPLHTIGKQIAEVLRLHRGLSGAAAR---ARALELLervgiPDPERRLd 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 135 ---HQqagsMSGGEQQ--MLAIArgLMAEPELLIIDE----LSLGLAPKIVDqLMGVLTmlNKEGLTILLVeqlaSYALA 205
Cdd:COG4172 152 aypHQ----LSGGQRQrvMIAMA--LANEPDLLIADEpttaLDVTVQAQILD-LLKDLQ--RELGMALLLI----THDLG 218
|
250 260 270
....*....|....*....|....*....|.
gi 492878293 206 I----ADYGFVVANGKIAREGPSTALSSDPE 232
Cdd:COG4172 219 VvrrfADRVAVMRQGEIVEQGPTAELFAAPQ 249
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
5-179 |
1.29e-17 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 79.73 E-value: 1.29e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 5 LLEIKNLELRYGTA---------VAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLS-A 74
Cdd:PRK10419 3 LLNVSGLSHHYAHGglsgkhqhqTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNrA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 75 DRKVARGLVmvpegRLLF--------PDQTVEDnlVLGA---YLQGGIKSPKSRSSLEKVLA--LFPRLKERLHQQagsM 141
Cdd:PRK10419 83 QRKAFRRDI-----QMVFqdsisavnPRKTVRE--IIREplrHLLSLDKAERLARASEMLRAvdLDDSVLDKRPPQ---L 152
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 492878293 142 SGGEQQMLAIARGLMAEPELLIIDE----LSLGLAPKIVDQL 179
Cdd:PRK10419 153 SGGQLQRVCLARALAVEPKLLILDEavsnLDLVLQAGVIRLL 194
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
6-166 |
1.59e-17 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 81.18 E-value: 1.59e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 6 LEIKNLELRY-GTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSADrKVARGLVM 84
Cdd:TIGR02857 322 LEFSGVSVAYpGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADAD-SWRDQIAW 400
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 85 VPEGRLLFPDqTVEDNLVLGaylQGGIKSPKSRSSLEKVLA--LFPRLKERLHQQAGS----MSGGEQQMLAIARGLMAE 158
Cdd:TIGR02857 401 VPQHPFLFAG-TIAENIRLA---RPDASDAEIREALERAGLdeFVAALPQGLDTPIGEggagLSGGQAQRLALARAFLRD 476
|
....*...
gi 492878293 159 PELLIIDE 166
Cdd:TIGR02857 477 APLLLLDE 484
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
5-223 |
3.11e-17 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 80.62 E-value: 3.11e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 5 LLEIKNLELRY-----GTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFR-GEDTTSLSADRKV 78
Cdd:TIGR03269 279 IIKVRNVSKRYisvdrGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRvGDEWVDMTKPGPD 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 79 ARGLVMVPEGRL-----LFPDQTVEDNLVLGAylqgGIKSPKSRSSLEKVLAL----FPRLKER--LHQQAGSMSGGEQQ 147
Cdd:TIGR03269 359 GRGRAKRYIGILhqeydLYPHRTVLDNLTEAI----GLELPDELARMKAVITLkmvgFDEEKAEeiLDKYPDELSEGERH 434
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 148 MLAIARGLMAEPELLIIDELSLGLAP----KIVDQLMGVLTMLNKeglTILLVEQLASYALAIADYGFVVANGKIAREGP 223
Cdd:TIGR03269 435 RVALAQVLIKEPRIVILDEPTGTMDPitkvDVTHSILKAREEMEQ---TFIIVSHDMDFVLDVCDRAALMRDGKIVKIGD 511
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
1-166 |
3.66e-17 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 80.11 E-value: 3.66e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 1 MSDVLLEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVfFRGEDTT--SLSADRKV 78
Cdd:COG0488 311 LGKKVLELEGLSKSYGDKTLLDDLSLRIDRGDRIGLIGPNGAGKSTLLKLLAGELEPDSGTV-KLGETVKigYFDQHQEE 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 79 arglvmvpegrlLFPDQTVEDNLVLGAylqGGIKSPKSRSSLEKVlaLFPRlkERLHQQAGSMSGGEQQMLAIARGLMAE 158
Cdd:COG0488 390 ------------LDPDKTVLDELRDGA---PGGTEQEVRGYLGRF--LFSG--DDAFKPVGVLSGGEKARLALAKLLLSP 450
|
....*...
gi 492878293 159 PELLIIDE 166
Cdd:COG0488 451 PNVLLLDE 458
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
3-238 |
3.84e-17 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 80.25 E-value: 3.84e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 3 DVLLEIKNLELRYGTAVA---VRNISISVKRGQLVAVIGNNGAGKSSMVRGATGlVRPS--SGKVFFRGEDTTSLSADRK 77
Cdd:TIGR02633 255 DVILEARNLTCWDVINPHrkrVDDVSFSLRRGEILGVAGLVGAGRTELVQALFG-AYPGkfEGNVFINGKPVDIRNPAQA 333
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 78 VARGLVMVPEGRL---LFPDQTVEDNLVLgAYLQGgiKSPKSRSSLEKVLALFPRLKERLHQQA-------GSMSGGEQQ 147
Cdd:TIGR02633 334 IRAGIAMVPEDRKrhgIVPILGVGKNITL-SVLKS--FCFKMRIDAAAELQIIGSAIQRLKVKTaspflpiGRLSGGNQQ 410
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 148 MLAIARGLMAEPELLIIDELSLGLAPKIVDQLMGVLTMLNKEGLTILLVEQLASYALAIADYGFVVANGKIAREGPSTAL 227
Cdd:TIGR02633 411 KAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNHAL 490
|
250
....*....|.
gi 492878293 228 SSDpEVMEAFL 238
Cdd:TIGR02633 491 TQE-QVLAAAL 500
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
6-166 |
4.12e-17 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 77.66 E-value: 4.12e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 6 LEIKNLELRYGTAV--AVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSAD---RKVAr 80
Cdd:cd03251 1 VEFKNVTFRYPGDGppVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLAslrRQIG- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 81 glvMVPEGRLLFPDqTVEDNLvlgAYLQGGIKSPKSRSSLEKVLA--LFPRLKERLHQQAGS----MSGGEQQMLAIARG 154
Cdd:cd03251 80 ---LVSQDVFLFND-TVAENI---AYGRPGATREEVEEAARAANAheFIMELPEGYDTVIGErgvkLSGGQRQRIAIARA 152
|
170
....*....|..
gi 492878293 155 LMAEPELLIIDE 166
Cdd:cd03251 153 LLKDPPILILDE 164
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
6-223 |
4.57e-17 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 76.80 E-value: 4.57e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 6 LEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGL--VRPSSGKVFFRGEDTTSLSADRKVARGLV 83
Cdd:cd03217 1 LEIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHpkYEVTEGEILFKGEDITDLPPEERARLGIF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 84 MVPEGRLLFPDQTVEDNLvlgaylqggikspksRSSLEkvlalfprlkerlhqqagSMSGGEQQMLAIARGLMAEPELLI 163
Cdd:cd03217 81 LAFQYPPEIPGVKNADFL---------------RYVNE------------------GFSGGEKKRNEILQLLLLEPDLAI 127
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 492878293 164 IDELSLGLAPKIVDQLMGVLTMLNKEGLTILLV---EQLASYalAIADYGFVVANGKIAREGP 223
Cdd:cd03217 128 LDEPDSGLDIDALRLVAEVINKLREEGKSVLIIthyQRLLDY--IKPDRVHVLYDGRIVKSGD 188
|
|
| dppF |
PRK11308 |
dipeptide transporter ATP-binding subunit; Provisional |
1-231 |
4.98e-17 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 78.85 E-value: 4.98e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 1 MSDVLLEIKNLELRY----------GTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTT 70
Cdd:PRK11308 1 SQQPLLQAIDLKKHYpvkrglfkpeRLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 71 SLS-ADRKVARGLV-MV---PEGRlLFPDQTVEDnlVLGAYLQggIKSPKSRSS-LEKVLALFPR--LKERLHQQAGSM- 141
Cdd:PRK11308 81 KADpEAQKLLRQKIqIVfqnPYGS-LNPRKKVGQ--ILEEPLL--INTSLSAAErREKALAMMAKvgLRPEHYDRYPHMf 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 142 SGGEQQMLAIARGLMAEPELLIIDELSLGLAPKIVDQLMGVLTMLNKE-GLTILLVEQLASYALAIADYGFVVANGKIAR 220
Cdd:PRK11308 156 SGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQElGLSYVFISHDLSVVEHIADEVMVMYLGRCVE 235
|
250
....*....|.
gi 492878293 221 EGPSTALSSDP 231
Cdd:PRK11308 236 KGTKEQIFNNP 246
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
6-218 |
7.07e-17 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 75.72 E-value: 7.07e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 6 LEIKNLELRYG--TAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLsaDRKVARGLV 83
Cdd:cd03246 1 LEVENVSFRYPgaEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQW--DPNELGDHV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 84 -MVPEGRLLFPDqTVEDNLvlgaylqggikspksrsslekvlalfprlkerlhqqagsMSGGEQQMLAIARGLMAEPELL 162
Cdd:cd03246 79 gYLPQDDELFSG-SIAENI---------------------------------------LSGGQRQRLGLARALYGNPRIL 118
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 492878293 163 IIDELSLGLAPKIVDQLMGVLTMLNKEGLTILLVEQLASyALAIADYGFVVANGKI 218
Cdd:cd03246 119 VLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPE-TLASADRILVLEDGRV 173
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
9-239 |
7.52e-17 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 77.72 E-value: 7.52e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 9 KNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLsADRKVARGLVMVPEG 88
Cdd:PRK10253 11 EQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHY-ASKEVARRIGLLAQN 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 89 RLLFPDQTVEDNLVLGAYLQGGIKSpKSRSSLEKVLALFPR---LKERLHQQAGSMSGGEQQMLAIARGLMAEPELLIID 165
Cdd:PRK10253 90 ATTPGDITVQELVARGRYPHQPLFT-RWRKEDEEAVTKAMQatgITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLD 168
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 492878293 166 ELSLGLAPKIVDQLMGVLTMLNKE-GLTILLVEQLASYALAIADYGFVVANGKIAREGPSTALSSdPEVMEAFLG 239
Cdd:PRK10253 169 EPTTWLDISHQIDLLELLSELNREkGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVT-AELIERIYG 242
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
5-232 |
1.00e-16 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 77.01 E-value: 1.00e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 5 LLEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVR------PSSGKVFFRGEDTTSLSAdRKV 78
Cdd:PRK14246 10 VFNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEiydskiKVDGKVLYFGKDIFQIDA-IKL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 79 ARGLVMVPEGRLLFPDQTVEDNLVLgAYLQGGIKSPKS-----RSSLEKVlALFPRLKERLHQQAGSMSGGEQQMLAIAR 153
Cdd:PRK14246 89 RKEVGMVFQQPNPFPHLSIYDNIAY-PLKSHGIKEKREikkivEECLRKV-GLWKEVYDRLNSPASQLSGGQQQRLTIAR 166
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 492878293 154 GLMAEPELLIIDELSLGLAPKIVDQLMGVLTMLNKEgLTILLVEQLASYALAIADYGFVVANGKIAREGPSTALSSDPE 232
Cdd:PRK14246 167 ALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNE-IAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTSPK 244
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
20-222 |
1.35e-16 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 78.90 E-value: 1.35e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 20 AVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDT-TSLSADRKvarGLVMVPEGRLLFPDQTVE 98
Cdd:TIGR01257 945 AVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIeTNLDAVRQ---SLGMCPQHNILFHHLTVA 1021
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 99 DNLVLGAYLQGgikspksRSSLEKVLALFPRLKER-LH----QQAGSMSGGEQQMLAIARGLMAEPELLIIDELSLGLAP 173
Cdd:TIGR01257 1022 EHILFYAQLKG-------RSWEEAQLEMEAMLEDTgLHhkrnEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDP 1094
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 492878293 174 KIVDQLMGVLtMLNKEGLTILLVEQLASYALAIADYGFVVANGKIAREG 222
Cdd:TIGR01257 1095 YSRRSIWDLL-LKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSG 1142
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
22-247 |
1.59e-16 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 78.17 E-value: 1.59e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 22 RNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSADRKVARGLVMVPEGRL---LFPDQTVE 98
Cdd:PRK15439 280 RNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQssgLYLDAPLA 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 99 DNLVLGAYLQGG--IKSPKSRSSLEKVLALFPRLKERLHQQAGSMSGGEQQMLAIARGLMAEPELLIIDELSLGLAPKIV 176
Cdd:PRK15439 360 WNVCALTHNRRGfwIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSAR 439
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 492878293 177 DQLMGVLTMLNKEGLTILL-------VEQLASYALaiadygfVVANGKIAREGPSTALSSDpEVMEAFLGKKKSTPNH 247
Cdd:PRK15439 440 NDIYQLIRSIAAQNVAVLFissdleeIEQMADRVL-------VMHQGEISGALTGAAINVD-TIMRLAFGEHQAQEAS 509
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
6-222 |
1.59e-16 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 74.66 E-value: 1.59e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 6 LEIKNLELRYG--TAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSADRkvaRGLV 83
Cdd:cd03247 1 LSINNVSFSYPeqEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKAL---SSLI 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 84 MVPEGRLLFPDQTVEDNLvlgaylqgGIKspksrsslekvlalfprlkerlhqqagsMSGGEQQMLAIARGLMAEPELLI 163
Cdd:cd03247 78 SVLNQRPYLFDTTLRNNL--------GRR----------------------------FSGGERQRLALARILLQDAPIVL 121
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 492878293 164 IDELSLGLAPKIVDQLMGVLTMLNKEGLTILLVEQLAsyALAIADYGFVVANGKIAREG 222
Cdd:cd03247 122 LDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLT--GIEHMDKILFLENGKIIMQG 178
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
20-195 |
1.77e-16 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 75.68 E-value: 1.77e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 20 AVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSaDRKVA---RGLVMVPEGRLLFPDQT 96
Cdd:PRK10908 17 ALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLK-NREVPflrRQIGMIFQDHHLLMDRT 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 97 VEDNLVLGAYLQGGIKSPKSR---SSLEKVlALFPRLKERLHQqagsMSGGEQQMLAIARGLMAEPELLIIDELSLGLAP 173
Cdd:PRK10908 96 VYDNVAIPLIIAGASGDDIRRrvsAALDKV-GLLDKAKNFPIQ----LSGGEQQRVGIARAVVNKPAVLLADEPTGNLDD 170
|
170 180
....*....|....*....|..
gi 492878293 174 KIVDQLMGVLTMLNKEGLTILL 195
Cdd:PRK10908 171 ALSEGILRLFEEFNRVGVTVLM 192
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
5-224 |
1.83e-16 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 78.23 E-value: 1.83e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 5 LLEIKNLELRY----GTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSAD----- 75
Cdd:PRK10535 4 LLELKDIRRSYpsgeEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADalaql 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 76 RKVARGLVMvpEGRLLFPDQTVEDNLVLGAYLQGgiKSPKSRssLEKVLALFPR--LKERLHQQAGSMSGGEQQMLAIAR 153
Cdd:PRK10535 84 RREHFGFIF--QRYHLLSHLTAAQNVEVPAVYAG--LERKQR--LLRAQELLQRlgLEDRVEYQPSQLSGGQQQRVSIAR 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 492878293 154 GLMAEPELLIIDELSLGLAPKIVDQLMGVLTMLNKEGLTILLVEQLASYAlAIADYGFVVANGKIAREGPS 224
Cdd:PRK10535 158 ALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVA-AQAERVIEIRDGEIVRNPPA 227
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
3-238 |
1.91e-16 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 78.29 E-value: 1.91e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 3 DVLLEIKNLELRygTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSADRKVARGL 82
Cdd:PRK09700 263 ETVFEVRNVTSR--DRKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGM 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 83 VMVPEGRL---LFPDQTVEDNLVLGAYLQGG--------IKSPKSRSSLEKVLALFPRLKERLHQQAGSMSGGEQQMLAI 151
Cdd:PRK09700 341 AYITESRRdngFFPNFSIAQNMAISRSLKDGgykgamglFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLI 420
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 152 ARGLMAEPELLIIDELSLGLAPKIVDQLMGVLTMLNKEGLTILLVEQLASYALAIADYGFVVANGKIAREGPSTALSSDP 231
Cdd:PRK09700 421 SKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILTNRDDMSEE 500
|
....*..
gi 492878293 232 EVMEAFL 238
Cdd:PRK09700 501 EIMAWAL 507
|
|
| CeuD |
COG4604 |
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ... |
7-223 |
3.09e-16 |
|
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443654 [Multi-domain] Cd Length: 252 Bit Score: 75.50 E-value: 3.09e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 7 EIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSAD---RKVA---- 79
Cdd:COG4604 3 EIKNVSKRYGGKVVLDDVSLTIPKGGITALIGPNGAGKSTLLSMISRLLPPDSGEVLVDGLDVATTPSRelaKRLAilrq 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 80 -RGLVMvpegRLlfpdqTVEDnLV-LGAYlqggiksPKSRSSL-----EKV------LALFPrLKER-LHQqagsMSGGE 145
Cdd:COG4604 83 eNHINS----RL-----TVRE-LVaFGRF-------PYSKGRLtaedrEIIdeaiayLDLED-LADRyLDE----LSGGQ 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 146 QQMLAIARGLMAEPELLIIDE-LSlGLAPKIVDQLMGVLTMLNKE-GLTILLVEQLASYALAIADYgfVVA--NGKIARE 221
Cdd:COG4604 141 RQRAFIAMVLAQDTDYVLLDEpLN-NLDMKHSVQMMKLLRRLADElGKTVVIVLHDINFASCYADH--IVAmkDGRVVAQ 217
|
..
gi 492878293 222 GP 223
Cdd:COG4604 218 GT 219
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
6-238 |
3.84e-16 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 77.15 E-value: 3.84e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 6 LEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKS---SMVRGATGLvRPSSGKVFFR----------------- 65
Cdd:TIGR03269 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSvlmHVLRGMDQY-EPTSGRIIYHvalcekcgyverpskvg 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 66 ------GEDTTSLSAD----------RKVARGLVMVPEGRLLFPDQTVEDNlVLGAYLQGGIKSPKSrssLEKVLALFP- 128
Cdd:TIGR03269 80 epcpvcGGTLEPEEVDfwnlsdklrrRIRKRIAIMLQRTFALYGDDTVLDN-VLEALEEIGYEGKEA---VGRAVDLIEm 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 129 -RLKERLHQQAGSMSGGEQQMLAIARGLMAEPELLIIDELSLGLAPKIVDQLMGVLTMLNKE-GLTILLVEQLASYALAI 206
Cdd:TIGR03269 156 vQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKAsGISMVLTSHWPEVIEDL 235
|
250 260 270
....*....|....*....|....*....|..
gi 492878293 207 ADYGFVVANGKIAREGPSTalssdpEVMEAFL 238
Cdd:TIGR03269 236 SDKAIWLENGEIKEEGTPD------EVVAVFM 261
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
21-241 |
3.89e-16 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 77.28 E-value: 3.89e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 21 VRNISISVKRGQLVAVIGNNGAGKSSMVRGATGlVRP--SSGKVFFRGEDTTSLSADRKVARGLVMVPEGRL---LFPDQ 95
Cdd:PRK13549 278 VDDVSFSLRRGEILGIAGLVGAGRTELVQCLFG-AYPgrWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKrdgIVPVM 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 96 TVEDNLVLGAYLQ----GGIKSPKSRSSLEKVLAlfpRLKER---LHQQAGSMSGGEQQMLAIARGLMAEPELLIIDELS 168
Cdd:PRK13549 357 GVGKNITLAALDRftggSRIDDAAELKTILESIQ---RLKVKtasPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPT 433
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 492878293 169 LGL---APKIVDQLMGvltMLNKEGLTILLVEQLASYALAIADYGFVVANGKIAREGPSTALSSDpEVMEAFLGKK 241
Cdd:PRK13549 434 RGIdvgAKYEIYKLIN---QLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHNLTQE-QVMEAALRSE 505
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
3-232 |
4.44e-16 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 77.03 E-value: 4.44e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 3 DVLLEIKNLELRY-----------GTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVrPSSGKVFFRGEDTTS 71
Cdd:COG4172 273 PPLLEARDLKVWFpikrglfrrtvGHVKAVDGVSLTLRRGETLGLVGESGSGKSTLGLALLRLI-PSEGEIRFDGQDLDG 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 72 LS--ADRKVARGLVMV---PEGRLlFPDQTVEDNLVLGAYLQGGIKSPKSR-----SSLEKVlALFPRLKERL-HQqags 140
Cdd:COG4172 352 LSrrALRPLRRRMQVVfqdPFGSL-SPRMTVGQIIAEGLRVHGPGLSAAERrarvaEALEEV-GLDPAARHRYpHE---- 425
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 141 MSGGEQQMLAIARGLMAEPELLIIDE----LSLGLAPKIVDQLMGvltmLNKE-GLTILLVeqlaSYAL----AIADYGF 211
Cdd:COG4172 426 FSGGQRQRIAIARALILEPKLLVLDEptsaLDVSVQAQILDLLRD----LQREhGLAYLFI----SHDLavvrALAHRVM 497
|
250 260
....*....|....*....|.
gi 492878293 212 VVANGKIAREGPSTALSSDPE 232
Cdd:COG4172 498 VMKDGKVVEQGPTEQVFDAPQ 518
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
20-239 |
4.67e-16 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 75.30 E-value: 4.67e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 20 AVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSADRKVArglvMVPEGRLL---FPdQT 96
Cdd:PRK15056 22 ALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVA----YVPQSEEVdwsFP-VL 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 97 VEDNLVLGAYLQGG---IKSPKSRSSLEKVLALFPRLKERlHQQAGSMSGGEQQMLAIARGLMAEPELLIIDELSLGLAP 173
Cdd:PRK15056 97 VEDVVMMGRYGHMGwlrRAKKRDRQIVTAALARVDMVEFR-HRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDV 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 492878293 174 KIVDQLMGVLTMLNKEGLTILLVEQLASYALAIADYGfVVANGKIAREGPSTALSSDPEVMEAFLG 239
Cdd:PRK15056 176 KTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYT-VMVKGTVLASGPTETTFTAENLELAFSG 240
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
6-166 |
5.26e-16 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 74.83 E-value: 5.26e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 6 LEIKNLELRYG--TAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDtTSLSADRKVARGLV 83
Cdd:cd03252 1 ITFEHVRFRYKpdGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHD-LALADPAWLRRQVG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 84 MVPEGRLLFpDQTVEDNLVL---GAYLQGGIKSPKSRSSLEKVLALFPRLKERLHQQAGSMSGGEQQMLAIARGLMAEPE 160
Cdd:cd03252 80 VVLQENVLF-NRSIRDNIALadpGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPR 158
|
....*.
gi 492878293 161 LLIIDE 166
Cdd:cd03252 159 ILIFDE 164
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
5-166 |
5.45e-16 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 74.39 E-value: 5.45e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 5 LLEIKNLE------LRYGTA-VAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFR--GEDTTSLSAD 75
Cdd:COG4778 4 LLEVENLSktftlhLQGGKRlPVLDGVSFSVAAGECVALTGPSGAGKSTLLKCIYGNYLPDSGSILVRhdGGWVDLAQAS 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 76 rkvARGLVMVPEGRLLF--------PDQTVEDnLVLGAYLQGGIKSPKSRSSLEKVLALFpRLKERLHQQA-GSMSGGEQ 146
Cdd:COG4778 84 ---PREILALRRRTIGYvsqflrviPRVSALD-VVAEPLLERGVDREEARARARELLARL-NLPERLWDLPpATFSGGEQ 158
|
170 180
....*....|....*....|
gi 492878293 147 QMLAIARGLMAEPELLIIDE 166
Cdd:COG4778 159 QRVNIARGFIADPPLLLLDE 178
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
5-230 |
6.09e-16 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 76.79 E-value: 6.09e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 5 LLEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGlVRPS---SGKVFFRGEDTTSLSADRKVARG 81
Cdd:TIGR02633 1 LLEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSG-VYPHgtwDGEIYWSGSPLKASNIRDTERAG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 82 LVMVPEGRLLFPDQTVEDNLVLGaylqGGIKSPKSRSSLEkvlALFPRLKERLHQ----------QAGSMSGGEQQMLAI 151
Cdd:TIGR02633 80 IVIIHQELTLVPELSVAENIFLG----NEITLPGGRMAYN---AMYLRAKNLLRElqldadnvtrPVGDYGGGQQQLVEI 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 492878293 152 ARGLMAEPELLIIDELSLGLAPKIVDQLMGVLTMLNKEGLTILLVEQLASYALAIADYGFVVANGKIAREGPSTALSSD 230
Cdd:TIGR02633 153 AKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTMSED 231
|
|
| ABCC_SUR1_N |
cd03290 |
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The ... |
23-216 |
6.91e-16 |
|
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213257 [Multi-domain] Cd Length: 218 Bit Score: 73.90 E-value: 6.91e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 23 NISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFF--RGEDTTSLSADRKVARGLVMVPEGRLLFPDQTVEDN 100
Cdd:cd03290 19 NINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWsnKNESEPSFEATRSRNRYSVAYAAQKPWLLNATVEEN 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 101 LVLGA-YLQGGIKSPKSRSSLEKVLALFPRLKE-RLHQQAGSMSGGEQQMLAIARGLMAEPELLIIDELSLGLAPKIVDQ 178
Cdd:cd03290 99 ITFGSpFNKQRYKAVTDACSLQPDIDLLPFGDQtEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDH 178
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 492878293 179 LM--GVLTMLNKEGLTILLVEQLASYaLAIADYGFVVANG 216
Cdd:cd03290 179 LMqeGILKFLQDDKRTLVLVTHKLQY-LPHADWIIAMKDG 217
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
5-226 |
7.24e-16 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 75.15 E-value: 7.24e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 5 LLEIKNLELRYG---TAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEdttSLSADR--KVA 79
Cdd:PRK13650 4 IIEVKNLTFKYKedqEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGD---LLTEENvwDIR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 80 RGLVMV---PEGRllFPDQTVEDNLVLGAYLQgGIKSPKSRSSLEKVLAL--FPRLKERlhqQAGSMSGGEQQMLAIARG 154
Cdd:PRK13650 81 HKIGMVfqnPDNQ--FVGATVEDDVAFGLENK-GIPHEEMKERVNEALELvgMQDFKER---EPARLSGGQKQRVAIAGA 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 492878293 155 LMAEPELLIIDELSLGLAPKIVDQLMGVLTMLNKE-GLTIL-LVEQLASYALaiADYGFVVANGKIarEGPSTA 226
Cdd:PRK13650 155 VAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDyQMTVIsITHDLDEVAL--SDRVLVMKNGQV--ESTSTP 224
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
14-223 |
7.96e-16 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 74.35 E-value: 7.96e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 14 RYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEdTTSLsadrkVARGLVMVPEgrllfp 93
Cdd:COG1134 35 RREEFWALKDVSFEVERGESVGIIGRNGAGKSTLLKLIAGILEPTSGRVEVNGR-VSAL-----LELGAGFHPE------ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 94 dQTVEDNLVLGAYLQGgikspKSRSSLEKVL---ALFPRLKERLHQQAGSMSGGEQQMLAIARGLMAEPELLIIDE-LSL 169
Cdd:COG1134 103 -LTGRENIYLNGRLLG-----LSRKEIDEKFdeiVEFAELGDFIDQPVKTYSSGMRARLAFAVATAVDPDILLVDEvLAV 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 492878293 170 GlapkivDQ-----LMGVLTMLNKEGLTILLV----EQLASYalaiADYGFVVANGKIAREGP 223
Cdd:COG1134 177 G------DAafqkkCLARIRELRESGRTVIFVshsmGAVRRL----CDRAIWLEKGRLVMDGD 229
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
6-166 |
9.37e-16 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 73.60 E-value: 9.37e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 6 LEIKNLELRYGTAV--AVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSAdRKVARGLV 83
Cdd:cd03369 7 IEVENLSVRYAPDLppVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPL-EDLRSSLT 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 84 MVPEGRLLFpDQTVEDNLvlgaylqggikSPKSRSSLEKVLALFpRLKErlhqqAGS-MSGGEQQMLAIARGLMAEPELL 162
Cdd:cd03369 86 IIPQDPTLF-SGTIRSNL-----------DPFDEYSDEEIYGAL-RVSE-----GGLnLSQGQRQLLCLARALLKRPRVL 147
|
....
gi 492878293 163 IIDE 166
Cdd:cd03369 148 VLDE 151
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
6-223 |
1.63e-15 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 73.42 E-value: 1.63e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 6 LEIKNLELRYGTAVAV-RNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSADrKVARGLVM 84
Cdd:cd03253 1 IEFENVTFAYDPGRPVlKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLD-SLRRAIGV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 85 VPEGRLLFPDqTVEDNLVLG---AYLQGGIKSPKSRSSLEKVLAlFP-----RLKERlhqqaGSM-SGGEQQMLAIARGL 155
Cdd:cd03253 80 VPQDTVLFND-TIGYNIRYGrpdATDEEVIEAAKAAQIHDKIMR-FPdgydtIVGER-----GLKlSGGEKQRVAIARAI 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 492878293 156 MAEPELLIIDELSLGLAPKIVDQLMGVLTMLNKEGLTILLVEQLASyaLAIADYGFVVANGKIAREGP 223
Cdd:cd03253 153 LKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLST--IVNADKIIVLKDGRIVERGT 218
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
4-231 |
1.71e-15 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 74.36 E-value: 1.71e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 4 VLLEIKNLELRYG-------------TAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTT 70
Cdd:PRK15079 7 VLLEVADLKVHFDikdgkqwfwqppkTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 71 SLSAD--RKVARGLVMVPEGRL--LFPDQTVEDnlVLGAYLQggIKSPK-SRSSL-EKVLA------LFPRLKERL-HQq 137
Cdd:PRK15079 87 GMKDDewRAVRSDIQMIFQDPLasLNPRMTIGE--IIAEPLR--TYHPKlSRQEVkDRVKAmmlkvgLLPNLINRYpHE- 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 138 agsMSGGEQQMLAIARGLMAEPELLIIDELSLGLAPKIVDQLMGVLTMLNKE-GLTILLVEQLASYALAIADYGFVVANG 216
Cdd:PRK15079 162 ---FSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREmGLSLIFIAHDLAVVKHISDRVLVMYLG 238
|
250
....*....|....*
gi 492878293 217 KIAREGPSTALSSDP 231
Cdd:PRK15079 239 HAVELGTYDEVYHNP 253
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
20-234 |
1.87e-15 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 73.89 E-value: 1.87e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 20 AVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKvffrgedttSLSADRKVARGLVMVPEGRLL-------- 91
Cdd:PRK13645 26 ALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQ---------TIVGDYAIPANLKKIKEVKRLrkeiglvf 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 92 -FPD-----QTVEDNLVLGAYLQGGIKSpKSRSSLEKVLALFPRLKERLHQQAGSMSGGEQQMLAIARGLMAEPELLIID 165
Cdd:PRK13645 97 qFPEyqlfqETIEKDIAFGPVNLGENKQ-EAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLD 175
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 166 ELSLGLAPKIVDQLMGVLTMLNKE-GLTILLVEQLASYALAIADYGFVVANGKIAREGPSTALSSDPEVM 234
Cdd:PRK13645 176 EPTGGLDPKGEEDFINLFERLNKEyKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFSNQELL 245
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
5-234 |
2.13e-15 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 73.59 E-value: 2.13e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 5 LLEIKNLELRYGTAVAVRN---ISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSAdRKVARG 81
Cdd:PRK13642 4 ILEVENLVFKYEKESDVNQlngVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENV-WNLRRK 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 82 LVMV---PEGRllFPDQTVEDNLVLGAYLQGGIKSPKSRSSLEKVLALfpRLKERLHQQAGSMSGGEQQMLAIARGLMAE 158
Cdd:PRK13642 83 IGMVfqnPDNQ--FVGATVEDDVAFGMENQGIPREEMIKRVDEALLAV--NMLDFKTREPARLSGGQKQRVAVAGIIALR 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 492878293 159 PELLIIDELSLGLAPKIVDQLMGVLTML-NKEGLTILLVEQLASYAlAIADYGFVVANGKIAREGPSTALSSDPEVM 234
Cdd:PRK13642 159 PEIIILDESTSMLDPTGRQEIMRVIHEIkEKYQLTVLSITHDLDEA-ASSDRILVMKAGEIIKEAAPSELFATSEDM 234
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
1-235 |
2.26e-15 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 73.68 E-value: 2.26e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 1 MSDVLLEIKNLELRYGTA--VAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSAD--- 75
Cdd:PRK13640 1 MKDNIVEFKHVSFTYPDSkkPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKtvw 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 76 ---RKVarGLVMV-PEGRllFPDQTVEDNLVLGayLQG-GIKSPKSRSSLEKVLALFPRLkERLHQQAGSMSGGEQQMLA 150
Cdd:PRK13640 81 dirEKV--GIVFQnPDNQ--FVGATVGDDVAFG--LENrAVPRPEMIKIVRDVLADVGML-DYIDSEPANLSGGQKQRVA 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 151 IARGLMAEPELLIIDELSLGLAPKIVDQLMGVLTMLNKE-GLTILLVEQLASYAlAIADYGFVVANGKIAREGPSTALSS 229
Cdd:PRK13640 154 IAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKnNLTVISITHDIDEA-NMADQVLVLDDGKLLAQGSPVEIFS 232
|
....*.
gi 492878293 230 DPEVME 235
Cdd:PRK13640 233 KVEMLK 238
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
8-166 |
3.21e-15 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 74.33 E-value: 3.21e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 8 IKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFfrgedttslsadrkVARGLVMvpe 87
Cdd:COG0488 1 LENLSKSFGGRPLLDDVSLSINPGDRIGLVGRNGAGKSTLLKILAGELEPDSGEVS--------------IPKGLRI--- 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 88 GRL-----LFPDQTVEDNLVLG---------AYLQGGIKSPKSRSSLEKVLALFPRLKER-------------------- 133
Cdd:COG0488 64 GYLpqeppLDDDLTVLDTVLDGdaelraleaELEELEAKLAEPDEDLERLAELQEEFEALggweaearaeeilsglgfpe 143
|
170 180 190
....*....|....*....|....*....|....*
gi 492878293 134 --LHQQAGSMSGGEQQMLAIARGLMAEPELLIIDE 166
Cdd:COG0488 144 edLDRPVSELSGGWRRRVALARALLSEPDLLLLDE 178
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
1-222 |
4.35e-15 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 73.53 E-value: 4.35e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 1 MSDVLLeiKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSADRkvaR 80
Cdd:PRK11000 1 MASVTL--RNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAE---R 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 81 GLVMVPEGRLLFPDQTVEDNLVLGAYLqGGIKSPKSRSSLEKVLALFpRLKERLHQQAGSMSGGEQQMLAIARGLMAEPE 160
Cdd:PRK11000 76 GVGMVFQSYALYPHLSVAENMSFGLKL-AGAKKEEINQRVNQVAEVL-QLAHLLDRKPKALSGGQRQRVAIGRTLVAEPS 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 492878293 161 LLIIDE-LS-LGLAPKIvdQLMGVLTMLNKE-GLTILLVEQLASYALAIADYGFVVANGKIAREG 222
Cdd:PRK11000 154 VFLLDEpLSnLDAALRV--QMRIEISRLHKRlGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
6-166 |
4.48e-15 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 71.76 E-value: 4.48e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 6 LEIKNLELRY--GTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSAdRKVARGLV 83
Cdd:cd03244 3 IEFKNVSLRYrpNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGL-HDLRSRIS 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 84 MVPEGRLLFPDqTVEDNL-VLGAYLQGGIKSPKSRSSL-EKVLALFPRLKERLHQQAGSMSGGEQQMLAIARGLMAEPEL 161
Cdd:cd03244 82 IIPQDPVLFSG-TIRSNLdPFGEYSDEELWQALERVGLkEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKI 160
|
....*
gi 492878293 162 LIIDE 166
Cdd:cd03244 161 LVLDE 165
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
6-196 |
7.99e-15 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 73.41 E-value: 7.99e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 6 LEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSADRKVARGLVMV 85
Cdd:PRK11288 5 LSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAII 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 86 PEGRLLFPDQTVEDNLVLGAYLQ-GGIKspKSRSSLEKVLALFPRLKERL--HQQAGSMSGGEQQMLAIARGLMAEPELL 162
Cdd:PRK11288 85 YQELHLVPEMTVAENLYLGQLPHkGGIV--NRRLLNYEAREQLEHLGVDIdpDTPLKYLSIGQRQMVEIAKALARNARVI 162
|
170 180 190
....*....|....*....|....*....|....
gi 492878293 163 IIDELSLGLAPKIVDQLMGVLTMLNKEGLTILLV 196
Cdd:PRK11288 163 AFDEPTSSLSAREIEQLFRVIRELRAEGRVILYV 196
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
10-235 |
8.57e-15 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 72.05 E-value: 8.57e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 10 NLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSG-----KVFFRGEDTTSLSADRKVARGLVM 84
Cdd:PRK14271 26 NLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGyrysgDVLLGGRSIFNYRDVLEFRRRVGM 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 85 VPEGRLLFPdQTVEDNLVLGAYLQGGIKSPKSRSSLEKVL---ALFPRLKERLHQQAGSMSGGEQQMLAIARGLMAEPEL 161
Cdd:PRK14271 106 LFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLtevGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEV 184
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 492878293 162 LIIDELSLGLAPKIVDQLMGVLTMLnKEGLTILLVEQLASYALAIADYGFVVANGKIAREGPSTALSSDPEVME 235
Cdd:PRK14271 185 LLLDEPTSALDPTTTEKIEEFIRSL-ADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSSPKHAE 257
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
3-221 |
9.92e-15 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 73.02 E-value: 9.92e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 3 DVLLEIKNLElrygtAVAVRN-ISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSADRKVARG 81
Cdd:PRK11288 255 EVRLRLDGLK-----GPGLREpISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAG 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 82 LVMVPEGRL---LFPDQTVEDNLVLGA---YLQGG--IKSPKSRSSLEKVLALFpRLKERLHQQA-GSMSGGEQQMLAIA 152
Cdd:PRK11288 330 IMLCPEDRKaegIIPVHSVADNINISArrhHLRAGclINNRWEAENADRFIRSL-NIKTPSREQLiMNLSGGNQQKAILG 408
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 492878293 153 RGLMAEPELLIIDELSLGLAPKIVDQLMGVLTMLNKEGLTILLVEQLASYALAIADYGFVVANGKIARE 221
Cdd:PRK11288 409 RWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGE 477
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
8-222 |
1.09e-14 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 70.64 E-value: 1.09e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 8 IKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSadrkVARGLVmvpe 87
Cdd:cd03220 25 ILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLG----LGGGFN---- 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 88 grllfPDQTVEDNLVLGAYLQGgiKSPKSRSSLEKVLALFPRLKERLHQQAGSMSGGEQQMLAIARGLMAEPELLIIDE- 166
Cdd:cd03220 97 -----PELTGRENIYLNGRLLG--LSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEv 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 492878293 167 LSLGLApKIVDQLMGVLTMLNKEGLTILLVEQLASYALAIADYGFVVANGKIAREG 222
Cdd:cd03220 170 LAVGDA-AFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
5-241 |
1.17e-14 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 72.73 E-value: 1.17e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 5 LLEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSADRKVARGLVM 84
Cdd:PRK10762 4 LLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGI 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 85 VPEGRLLFPDQTVEDNLVLGAYLQ---GGIKSPKSRSSLEKVLAlfpRL--KERLHQQAGSMSGGEQQMLAIARGLMAEP 159
Cdd:PRK10762 84 IHQELNLIPQLTIAENIFLGREFVnrfGRIDWKKMYAEADKLLA---RLnlRFSSDKLVGELSIGEQQMVEIAKVLSFES 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 160 ELLIIDELSLGLAPKIVDQLMGVLTMLNKEGLTILLVEQLASYALAIADYGFVVANGKIAREGPSTALSSDpEVMEAFLG 239
Cdd:PRK10762 161 KVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLTED-SLIEMMVG 239
|
..
gi 492878293 240 KK 241
Cdd:PRK10762 240 RK 241
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
7-166 |
1.56e-14 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 70.65 E-value: 1.56e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 7 EIKNLELRYGT---AVAVRNISISVKRGQLVAVIGNNGAGKSSMVrgatGLVR----PSSGKVFFRGEDTTSLSAdRKVA 79
Cdd:cd03249 2 EFKNVSFRYPSrpdVPILKGLSLTIPPGKTVALVGSSGCGKSTVV----SLLErfydPTSGEILLDGVDIRDLNL-RWLR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 80 RGLVMVPEGRLLFpDQTVEDNLVLGAY--LQGGIKSPKSRSSLEKVLALFP-RLKERLHQQAGSMSGGEQQMLAIARGLM 156
Cdd:cd03249 77 SQIGLVSQEPVLF-DGTIAENIRYGKPdaTDEEVEEAAKKANIHDFIMSLPdGYDTLVGERGSQLSGGQKQRIAIARALL 155
|
170
....*....|
gi 492878293 157 AEPELLIIDE 166
Cdd:cd03249 156 RNPKILLLDE 165
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
21-222 |
2.79e-14 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 69.12 E-value: 2.79e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 21 VRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPS--SGKVFFRGEDTTSLSADRKVArglvMVPEGRLLFPDQTVE 98
Cdd:cd03213 25 LKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLgvSGEVLINGRPLDKRSFRKIIG----YVPQDDILHPTLTVR 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 99 DNLVLGAYLQGgikspksrsslekvlalfprlkerlhqqagsMSGGEQQMLAIARGLMAEPELLIIDELSLGLAPKIVDQ 178
Cdd:cd03213 101 ETLMFAAKLRG-------------------------------LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQ 149
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 492878293 179 LMGVLTMLNKEGLTILL-VEQLASYALAIADYGFVVANGKIAREG 222
Cdd:cd03213 150 VMSLLRRLADTGRTIICsIHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
1-235 |
3.90e-14 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 70.17 E-value: 3.90e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 1 MSDVLLEIKNLELRY--GTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTS--LSADR 76
Cdd:PRK13648 3 DKNSIIVFKNVSFQYqsDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDdnFEKLR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 77 KVARGLVMVPEGRllFPDQTVEDNLVLGAYLQgGIKSPKSRSSLEKVLALFPRLkERLHQQAGSMSGGEQQMLAIARGLM 156
Cdd:PRK13648 83 KHIGIVFQNPDNQ--FVGSIVKYDVAFGLENH-AVPYDEMHRRVSEALKQVDML-ERADYEPNALSGGQKQRVAIAGVLA 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 157 AEPELLIIDELSLGLAPKIVDQLMGVLTMLNKE-GLTILLVEQLASYALAiADYGFVVANGKIAREG-PSTALSSDPEVM 234
Cdd:PRK13648 159 LNPSVIILDEATSMLDPDARQNLLDLVRKVKSEhNITIISITHDLSEAME-ADHVIVMNKGTVYKEGtPTEIFDHAEELT 237
|
.
gi 492878293 235 E 235
Cdd:PRK13648 238 R 238
|
|
| ycf16 |
CHL00131 |
sulfate ABC transporter protein; Validated |
1-225 |
3.92e-14 |
|
sulfate ABC transporter protein; Validated
Pssm-ID: 214372 [Multi-domain] Cd Length: 252 Bit Score: 69.67 E-value: 3.92e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 1 MSDVLLEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGlvRPS----SGKVFFRGEDTTSLSADR 76
Cdd:CHL00131 3 KNKPILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAG--HPAykilEGDILFKGESILDLEPEE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 77 KVARGLVMVPEGRLLFPDQTVEDNLVLgAYlqggiKSPKSRSSLEKV--LALFPRLKERLhqQAGSM------------- 141
Cdd:CHL00131 81 RAHLGIFLAFQYPIEIPGVSNADFLRL-AY-----NSKRKFQGLPELdpLEFLEIINEKL--KLVGMdpsflsrnvnegf 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 142 SGGEQQMLAIARGLMAEPELLIIDELSLGL---APKIVDQlmGVLTMLNKEGLTILLV--EQLASYalAIADYGFVVANG 216
Cdd:CHL00131 153 SGGEKKRNEILQMALLDSELAILDETDSGLdidALKIIAE--GINKLMTSENSIILIThyQRLLDY--IKPDYVHVMQNG 228
|
....*....
gi 492878293 217 KIAREGPST 225
Cdd:CHL00131 229 KIIKTGDAE 237
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
1-171 |
4.40e-14 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 69.76 E-value: 4.40e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 1 MSDvLLEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVffrgedttslsaDRKVAR 80
Cdd:PRK09544 1 MTS-LVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI------------KRNGKL 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 81 GLVMVPEGrlLFPDQTVEDNLVLGAYLQGGIKSPKSRSSLEKVLAlfprlkERLHQQA-GSMSGGEQQMLAIARGLMAEP 159
Cdd:PRK09544 68 RIGYVPQK--LYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQA------GHLIDAPmQKLSGGETQRVLLARALLNRP 139
|
170
....*....|..
gi 492878293 160 ELLIIDELSLGL 171
Cdd:PRK09544 140 QLLVLDEPTQGV 151
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
5-235 |
6.09e-14 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 69.65 E-value: 6.09e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 5 LLEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGE----DTTSLSADRKVAR 80
Cdd:PRK13638 1 MLATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKpldySKRGLLALRQQVA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 81 GLVMVPEGRLLFPDQtveDNLVLGAYLQGGIKSPKSRSSLEKVLALFPRLKERlHQQAGSMSGGEQQMLAIARGLMAEPE 160
Cdd:PRK13638 81 TVFQDPEQQIFYTDI---DSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFR-HQPIQCLSHGQKKRVAIAGALVLQAR 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 492878293 161 LLIIDELSLGLAPKIVDQLMGVLTMLNKEGLTILLVEQLASYALAIADYGFVVANGKIAREGPSTALSSDPEVME 235
Cdd:PRK13638 157 YLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFACTEAME 231
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
17-198 |
6.14e-14 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 68.84 E-value: 6.14e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 17 TAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPS---SGKVFFRGEDttsLSADrKVARGLVMVPEGRLLFP 93
Cdd:cd03234 19 YARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGgttSGQILFNGQP---RKPD-QFQKCVAYVRQDDILLP 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 94 DQTVEDNLVLGAYLQGGIKSPKSRSsleKVLALFPRLKERLHQQAGSM-----SGGEQQMLAIARGLMAEPELLIIDELS 168
Cdd:cd03234 95 GLTVRETLTYTAILRLPRKSSDAIR---KKRVEDVLLRDLALTRIGGNlvkgiSGGERRRVSIAVQLLWDPKVLILDEPT 171
|
170 180 190
....*....|....*....|....*....|.
gi 492878293 169 LGLAPKIVDQLMGVLTMLNKEGLTILL-VEQ 198
Cdd:cd03234 172 SGLDSFTALNLVSTLSQLARRNRIVILtIHQ 202
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
6-166 |
6.78e-14 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 68.36 E-value: 6.78e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 6 LEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTslsaDRKVARGLVMV 85
Cdd:PRK13539 3 LEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDID----DPDVAEACHYL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 86 PEGRLLFPDQTVEDNLVLGAYLQGGikspkSRSSLEKVLALFpRLKERLHQQAGSMSGGEQQMLAIARGLMAEPELLIID 165
Cdd:PRK13539 79 GHRNAMKPALTVAENLEFWAAFLGG-----EELDIAAALEAV-GLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILD 152
|
.
gi 492878293 166 E 166
Cdd:PRK13539 153 E 153
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
6-196 |
9.93e-14 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 70.22 E-value: 9.93e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 6 LEIKNLELR--YGTAVaVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGL--------VRPSSGKVFF--------RGe 67
Cdd:COG4178 363 LALEDLTLRtpDGRPL-LEDLSLSLKPGERLLITGPSGSGKSTLLRAIAGLwpygsgriARPAGARVLFlpqrpylpLG- 440
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 68 dttSLsadrkvaRGLVMVPEGRLLFPDQTVednlvlgaylqggikspksRSSLEKV-LalfPRLKERLHQQAG---SMSG 143
Cdd:COG4178 441 ---TL-------REALLYPATAEAFSDAEL-------------------REALEAVgL---GHLAERLDEEADwdqVLSL 488
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 492878293 144 GEQQMLAIARGLMAEPELLIIDELSLGLAPKIVDQLMgvlTMLNKE--GLTILLV 196
Cdd:COG4178 489 GEQQRLAFARLLLHKPDWLFLDEATSALDEENEAALY---QLLREElpGTTVISV 540
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
35-223 |
1.15e-13 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 69.52 E-value: 1.15e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 35 AVIGNNGAGKSSMVRGATGLVRPSSGK------VFFRGEDTTSLSAD-RKVarGLVMvPEGRLlFPDQTVEDNLVLGAyl 107
Cdd:PRK11144 28 AIFGRSGAGKTSLINAISGLTRPQKGRivlngrVLFDAEKGICLPPEkRRI--GYVF-QDARL-FPHYKVRGNLRYGM-- 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 108 qggikSPKSRSSLEKVLALF---PRLKeRLhqqAGSMSGGEQQMLAIARGLMAEPELLIIDE--LSLGLAPKivDQLMGV 182
Cdd:PRK11144 102 -----AKSMVAQFDKIVALLgiePLLD-RY---PGSLSGGEKQRVAIGRALLTAPELLLMDEplASLDLPRK--RELLPY 170
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 492878293 183 LTMLNKE-GLTILLVEQLASYALAIADYGFVVANGKIAREGP 223
Cdd:PRK11144 171 LERLAREiNIPILYVSHSLDEILRLADRVVVLEQGKVKAFGP 212
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
6-166 |
1.52e-13 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 69.75 E-value: 1.52e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 6 LEIKNLELRYGTAVAV-RNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSaDRKVARGLVM 84
Cdd:PRK10790 341 IDIDNVSFAYRDDNLVlQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLS-HSVLRQGVAM 419
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 85 VPEGRLLFPDqTVEDNLVLGAylqgGIKSPKSRSSLEKV-LALFPR-----LKERLHQQAGSMSGGEQQMLAIARGLMAE 158
Cdd:PRK10790 420 VQQDPVVLAD-TFLANVTLGR----DISEEQVWQALETVqLAELARslpdgLYTPLGEQGNNLSVGQKQLLALARVLVQT 494
|
....*...
gi 492878293 159 PELLIIDE 166
Cdd:PRK10790 495 PQILILDE 502
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
1-232 |
1.83e-13 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 69.35 E-value: 1.83e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 1 MSDVLLEIKNLEL--RYGTAV--AVRNISISVKRGQLVAVIGNNGAGKS----SMVR--GATGLVRPSsGKVFFRGEDTt 70
Cdd:PRK15134 1 MTQPLLAIENLSVafRQQQTVrtVVNDVSLQIEAGETLALVGESGSGKSvtalSILRllPSPPVVYPS-GDIRFHGESL- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 71 sLSADRKVARGL-----------VMVPegrlLFPDQTVEDNLVLGAYLQGGIKSPKSR----SSLEKVLALFP--RLKER 133
Cdd:PRK15134 79 -LHASEQTLRGVrgnkiamifqePMVS----LNPLHTLEKQLYEVLSLHRGMRREAARgeilNCLDRVGIRQAakRLTDY 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 134 LHQqagsMSGGEQQMLAIARGLMAEPELLIIDELSLGLAPKIVDQLMGVLTMLNKE-GLTILLVEQLASYALAIADYGFV 212
Cdd:PRK15134 154 PHQ----LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQElNMGLLFITHNLSIVRKLADRVAV 229
|
250 260
....*....|....*....|
gi 492878293 213 VANGKIAREGPSTALSSDPE 232
Cdd:PRK15134 230 MQNGRCVEQNRAATLFSAPT 249
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
5-166 |
2.36e-13 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 66.75 E-value: 2.36e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 5 LLEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDttsLSADRKVARglvm 84
Cdd:PRK13538 1 MLEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEP---IRRQRDEYH---- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 85 vpeGRLLF--------PDQTVEDNLVLGAYLQGGIKSPKSRSSLEKVlalfpRLKERLHQQAGSMSGGEQQMLAIARGLM 156
Cdd:PRK13538 74 ---QDLLYlghqpgikTELTALENLRFYQRLHGPGDDEALWEALAQV-----GLAGFEDVPVRQLSAGQQRRVALARLWL 145
|
170
....*....|
gi 492878293 157 AEPELLIIDE 166
Cdd:PRK13538 146 TRAPLWILDE 155
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
3-226 |
2.72e-13 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 67.51 E-value: 2.72e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 3 DVLLEIKNLE--LRYGTAV-------AVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTT--S 71
Cdd:PRK15112 2 ETLLEVRNLSktFRYRTGWfrrqtveAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHfgD 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 72 LSADRKVARGLVMVPEGRlLFPDQTVEDNLVLGAYLQGGIKSPKSRSSLEKVLALFPRLKERLHQQAGSMSGGEQQMLAI 151
Cdd:PRK15112 82 YSYRSQRIRMIFQDPSTS-LNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGL 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 492878293 152 ARGLMAEPELLIIDELSLGLAPKIVDQLMGVLTMLN-KEGLTILLVEQLASYALAIADYGFVVANGKIAREGpSTA 226
Cdd:PRK15112 161 ARALILRPKVIIADEALASLDMSMRSQLINLMLELQeKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERG-STA 235
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
5-166 |
3.48e-13 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 68.45 E-value: 3.48e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 5 LLEIKNLELRY-GTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSAdRKVARGLV 83
Cdd:PRK13657 334 AVEFDDVSFSYdNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTR-ASLRRNIA 412
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 84 MVPEGRLLFpDQTVEDNLVLG---AYLQGGIKSPKSRSSLEKVLALFPRLKERLHQQAGSMSGGEQQMLAIARGLMAEPE 160
Cdd:PRK13657 413 VVFQDAGLF-NRSIEDNIRVGrpdATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPP 491
|
....*.
gi 492878293 161 LLIIDE 166
Cdd:PRK13657 492 ILILDE 497
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
6-217 |
4.22e-13 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 65.95 E-value: 4.22e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 6 LEIKNLELRYG-----TAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGedttslsadrKVAr 80
Cdd:cd03250 1 ISVEDASFTWDsgeqeTSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG----------SIA- 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 81 glvMVPEGRLLFPDqTVEDNLVLGA------YLQgGIKSpksrSSLEKVLALFP-----RLKERlhqqaG-SMSGGEQQM 148
Cdd:cd03250 70 ---YVSQEPWIQNG-TIRENILFGKpfdeerYEK-VIKA----CALEPDLEILPdgdltEIGEK-----GiNLSGGQKQR 135
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 492878293 149 LAIARGLMAEPELLIIDE-LSlGL----APKIVDQLMGVLTMLNKeglTILLVEQLASYaLAIADYGFVVANGK 217
Cdd:cd03250 136 ISLARAVYSDADIYLLDDpLS-AVdahvGRHIFENCILGLLLNNK---TRILVTHQLQL-LPHADQIVVLDNGR 204
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
5-209 |
4.35e-13 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 66.13 E-value: 4.35e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 5 LLEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEdttSLSADRKV-ARGLV 83
Cdd:PRK13540 1 MLDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQ---SIKKDLCTyQKQLC 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 84 MVPEGRLLFPDQTVEDNLVLGAYLQGGikspksRSSLEKVLALFpRLKERLHQQAGSMSGGEQQMLAIARGLMAEPELLI 163
Cdd:PRK13540 78 FVGHRSGINPYLTLRENCLYDIHFSPG------AVGITELCRLF-SLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWL 150
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 492878293 164 IDELSLGLAPKIVDQLMGVLTMLNKEGLTILLVEQlASYALAIADY 209
Cdd:PRK13540 151 LDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSH-QDLPLNKADY 195
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
5-230 |
8.22e-13 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 66.19 E-value: 8.22e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 5 LLEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLV---RPSSGKVFFRGEDTT---SLSADRKV 78
Cdd:PRK09984 4 IIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLItgdKSAGSHIELLGRTVQregRLARDIRK 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 79 ARGLV-MVPEGRLLFPDQTVEDNLVLGAYLQggikSPKSRSSL--------EKVLALFPR--LKERLHQQAGSMSGGEQQ 147
Cdd:PRK09984 84 SRANTgYIFQQFNLVNRLSVLENVLIGALGS----TPFWRTCFswftreqkQRALQALTRvgMVHFAHQRVSTLSGGQQQ 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 148 MLAIARGLMAEPELLIIDELSLGLAPKIVDQLMGVLTMLNK-EGLTILLVEQLASYALAIADYGFVVANGKIAREGPSTA 226
Cdd:PRK09984 160 RVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQnDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQ 239
|
....
gi 492878293 227 LSSD 230
Cdd:PRK09984 240 FDNE 243
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
14-220 |
2.03e-12 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 65.49 E-value: 2.03e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 14 RYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTtslSADRK-VAR--GLVMvpeGR- 89
Cdd:COG4586 31 EYREVEAVDDISFTIEPGEIVGFIGPNGAGKSTTIKMLTGILVPTSGEVRVLGYVP---FKRRKeFARriGVVF---GQr 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 90 -LLFPDQTVEDNL-VLGA-YlqgGIKSPKSRSSLEKVLALFpRLKERLHQQAGSMSGGeQQMLA-IARGLMAEPELLIID 165
Cdd:COG4586 105 sQLWWDLPAIDSFrLLKAiY---RIPDAEYKKRLDELVELL-DLGELLDTPVRQLSLG-QRMRCeLAAALLHRPKILFLD 179
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 492878293 166 ELSLGLAPKIVDQLMGVLTMLNKE-GLTILL-------VEQLASYALAIaDYGFVVANGKIAR 220
Cdd:COG4586 180 EPTIGLDVVSKEAIREFLKEYNRErGTTILLtshdmddIEALCDRVIVI-DHGRIIYDGSLEE 241
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
6-210 |
2.98e-12 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 62.94 E-value: 2.98e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 6 LEIKNLELRYGTA-VAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVffrgedttslsaDRKVARGLVM 84
Cdd:cd03223 1 IELENLSLATPDGrVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRI------------GMPEGEDLLF 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 85 VPEgRLLFPDQTVEDNLVLgaylqggiksPksrssLEKVLalfprlkerlhqqagsmSGGEQQMLAIARGLMAEPELLII 164
Cdd:cd03223 69 LPQ-RPYLPLGTLREQLIY----------P-----WDDVL-----------------SGGEQQRLAFARLLLHKPKFVFL 115
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 492878293 165 DELSLGLAPKIVDQLMgvlTMLNKEGLTILLV------EQLASYALAIADYG 210
Cdd:cd03223 116 DEATSALDEESEDRLY---QLLKELGITVISVghrpslWKFHDRVLDLDGEG 164
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
1-171 |
3.21e-12 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 64.56 E-value: 3.21e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 1 MSDVLLEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTT-------SLS 73
Cdd:PRK11701 2 MDQPLLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQlrdlyalSEA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 74 ADRKVAR------------GLVM-VPEG-----RLlfpdqtvednLVLGAYLQGGIKSpKSRSSLEKV-LALfprlkERL 134
Cdd:PRK11701 82 ERRRLLRtewgfvhqhprdGLRMqVSAGgnigeRL----------MAVGARHYGDIRA-TAGDWLERVeIDA-----ARI 145
|
170 180 190
....*....|....*....|....*....|....*..
gi 492878293 135 HQQAGSMSGGEQQMLAIARGLMAEPELLIIDELSLGL 171
Cdd:PRK11701 146 DDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGL 182
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
24-227 |
3.28e-12 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 66.12 E-value: 3.28e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 24 ISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEdttslsadrkvargLVMVPEgRLLFPDQTVEDNLVL 103
Cdd:TIGR00957 657 ITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGS--------------VAYVPQ-QAWIQNDSLRENILF 721
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 104 GAYLQggikSPKSRSSLEkVLALFPRL-------KERLHQQAGSMSGGEQQMLAIARGLMAEPELLIIDE----LSLGLA 172
Cdd:TIGR00957 722 GKALN----EKYYQQVLE-ACALLPDLeilpsgdRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDplsaVDAHVG 796
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 492878293 173 PKIVDQLMGVLTMLnkEGLTILLVEQLASYaLAIADYGFVVANGKIAREGPSTAL 227
Cdd:TIGR00957 797 KHIFEHVIGPEGVL--KNKTRILVTHGISY-LPQVDVIIVMSGGKISEMGSYQEL 848
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
3-219 |
9.84e-12 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 63.98 E-value: 9.84e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 3 DVLLEIKNLelrygTAV---AVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSADRKVA 79
Cdd:PRK10982 248 EVILEVRNL-----TSLrqpSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAIN 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 80 RGLVMVPEGRL---LFPDQTVEDNLVLG---AYLQ--GGIKSPKSRSSLEKVLALFpRLKERLHQ-QAGSMSGGEQQMLA 150
Cdd:PRK10982 323 HGFALVTEERRstgIYAYLDIGFNSLISnirNYKNkvGLLDNSRMKSDTQWVIDSM-RVKTPGHRtQIGSLSGGNQQKVI 401
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 492878293 151 IARGLMAEPELLIIDELSLGL---APKIVDQLMgvlTMLNKEGLTILLVEQLASYALAIADYGFVVANGKIA 219
Cdd:PRK10982 402 IGRWLLTQPEILMLDEPTRGIdvgAKFEIYQLI---AELAKKDKGIIIISSEMPELLGITDRILVMSNGLVA 470
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
3-165 |
1.28e-11 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 64.16 E-value: 1.28e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 3 DVLLEIKNLELrYGTAVaVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSlsadrkvargl 82
Cdd:TIGR01271 426 DDGLFFSNFSL-YVTPV-LKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFS----------- 492
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 83 vmvPEGRLLFPDqTVEDNLVLG-AYLQGGIKSPKSRSSLEKVLALFPRLKERLHQQAG-SMSGGEQQMLAIARGLMAEPE 160
Cdd:TIGR01271 493 ---PQTSWIMPG-TIKDNIIFGlSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGiTLSGGQRARISLARAVYKDAD 568
|
....*
gi 492878293 161 LLIID 165
Cdd:TIGR01271 569 LYLLD 573
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
20-230 |
1.72e-11 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 63.60 E-value: 1.72e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 20 AVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSADRKVARGLVMVPEGRLLFPDQTVED 99
Cdd:PRK10982 13 ALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVMD 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 100 NLVLGAYLQGGIKSPKSRsSLEKVLALFPRLKERL--HQQAGSMSGGEQQMLAIARGLMAEPELLIIDELSLGLAPKIVD 177
Cdd:PRK10982 93 NMWLGRYPTKGMFVDQDK-MYRDTKAIFDELDIDIdpRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVN 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 492878293 178 QLMGVLTMLNKEGLTILLVEQLASYALAIADYGFVVANGKIAREGPSTALSSD 230
Cdd:PRK10982 172 HLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLTMD 224
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
6-218 |
3.34e-11 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 62.45 E-value: 3.34e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 6 LEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAgksSMVRGA--TGLVRPSSGKVFFRgedTTSLSADRKVARGLV 83
Cdd:NF000106 14 VEVRGLVKHFGEVKAVDGVDLDVREGTVLGVLGP*GA---A**RGAlpAHV*GPDAGRRPWR---F*TWCANRRALRRTI 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 84 ----MVPEGRLlfPDQTVEDNL-VLGAYLQGGIKSPKSRSslEKVLALFpRLKERLHQQAGSMSGGEQQMLAIARGLMAE 158
Cdd:NF000106 88 g*hrPVR*GRR--ESFSGRENLyMIGR*LDLSRKDARARA--DELLERF-SLTEAAGRAAAKYSGGMRRRLDLAASMIGR 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 492878293 159 PELLIIDELSLGLAPKIVDQLMGVLTMLNKEGLTILLV-------EQLAsYALAIADYGFVVANGKI 218
Cdd:NF000106 163 PAVLYLDEPTTGLDPRTRNEVWDEVRSMVRDGATVLLTtqymeeaEQLA-HELTVIDRGRVIADGKV 228
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
20-232 |
3.98e-11 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 62.57 E-value: 3.98e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 20 AVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGE--DTTSLSADRKVARGLVMVPEGRL--LFPDQ 95
Cdd:PRK10261 339 AVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQriDTLSPGKLQALRRDIQFIFQDPYasLDPRQ 418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 96 TVEDNLVLGAYLQGGIKSPKSRSSLEKVLALFPRLKERLHQQAGSMSGGEQQMLAIARGLMAEPELLIIDELSLGLAPKI 175
Cdd:PRK10261 419 TVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSI 498
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 492878293 176 VDQLMGVLTMLNKE-GLTILLVEQLASYALAIADYGFVVANGKIAREGPSTALSSDPE 232
Cdd:PRK10261 499 RGQIINLLLDLQRDfGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFENPQ 556
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
6-166 |
8.42e-11 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 58.23 E-value: 8.42e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 6 LEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVffrgedttslsadrkvarglvmv 85
Cdd:cd03221 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV----------------------- 57
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 86 pegrllfpdqTVEDNLVLGAYLQggikspksrsslekvlalfprlkerlhqqagsMSGGEQQMLAIARGLMAEPELLIID 165
Cdd:cd03221 58 ----------TWGSTVKIGYFEQ--------------------------------LSGGEKMRLALAKLLLENPNLLLLD 95
|
.
gi 492878293 166 E 166
Cdd:cd03221 96 E 96
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
7-166 |
1.26e-10 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 61.12 E-value: 1.26e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 7 EIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVfFRGedtTSLSA---DRKVArglv 83
Cdd:PRK11147 321 EMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRI-HCG---TKLEVayfDQHRA---- 392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 84 mvpegrLLFPDQTVEDNL---------------VLGaYLQGGIKSPKsrSSLEKVLALfprlkerlhqqagsmSGGEQQM 148
Cdd:PRK11147 393 ------ELDPEKTVMDNLaegkqevmvngrprhVLG-YLQDFLFHPK--RAMTPVKAL---------------SGGERNR 448
|
170
....*....|....*...
gi 492878293 149 LAIARGLMAEPELLIIDE 166
Cdd:PRK11147 449 LLLARLFLKPSNLLILDE 466
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
31-222 |
1.62e-10 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 60.66 E-value: 1.62e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 31 GQLVAVIGNNGAGKSSMVRGATGLVRPSSgkvfFRGedtTSLSADRKVARGLV----MVPEGRLLFPDQTVEDNLVLGAY 106
Cdd:PLN03211 94 GEILAVLGPSGSGKSTLLNALAGRIQGNN----FTG---TILANNRKPTKQILkrtgFVTQDDILYPHLTVRETLVFCSL 166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 107 LqggiKSPKSRSSLEKVLALFPRLKERLHQQAGS----------MSGGEQQMLAIARGLMAEPELLIIDELSLGLAPKIV 176
Cdd:PLN03211 167 L----RLPKSLTKQEKILVAESVISELGLTKCENtiignsfirgISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAA 242
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 492878293 177 DQLMGVLTMLNKEGLTILL-VEQLASYALAIADYGFVVANGKIAREG 222
Cdd:PLN03211 243 YRLVLTLGSLAQKGKTIVTsMHQPSSRVYQMFDSVLVLSEGRCLFFG 289
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
6-183 |
2.16e-10 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 58.66 E-value: 2.16e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 6 LEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGedtTSLSADR-KVARGLVM 84
Cdd:cd03231 1 LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNG---GPLDFQRdSIARGLLY 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 85 VPEGRLLFPDQTVEDNLVLGAYLQggikspkSRSSLEKVLALFpRLKERLHQQAGSMSGGEQQMLAIARGLMAEPELLII 164
Cdd:cd03231 78 LGHAPGIKTTLSVLENLRFWHADH-------SDEQVEEALARV-GLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWIL 149
|
170
....*....|....*....
gi 492878293 165 DELSLGLAPKIVDQLMGVL 183
Cdd:cd03231 150 DEPTTALDKAGVARFAEAM 168
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
21-166 |
2.75e-10 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 58.64 E-value: 2.75e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 21 VRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEdTTSLSADRKVARGLVMVPEGRLLFPdQTVEDN 100
Cdd:cd03248 30 LQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGK-PISQYEHKYLHSKVSLVGQEPVLFA-RSLQDN 107
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 492878293 101 LVLGayLQG----GIKSPKSRSSLEKVLALFPR-LKERLHQQAGSMSGGEQQMLAIARGLMAEPELLIIDE 166
Cdd:cd03248 108 IAYG--LQScsfeCVKEAAQKAHAHSFISELASgYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDE 176
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
2-238 |
3.02e-10 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 59.86 E-value: 3.02e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 2 SDVLLEIKNLE-LRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVrPSSGKVFFRGEDTTSLSAD--RKv 78
Cdd:PRK11174 346 DPVTIEAEDLEiLSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPEswRK- 423
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 79 arGLVMVPEGRLLFPdQTVEDNLVLGaylqggiKSPKSRSSLEKVLAL------FPRLKERLH----QQAGSMSGGEQQM 148
Cdd:PRK11174 424 --HLSWVGQNPQLPH-GTLRDNVLLG-------NPDASDEQLQQALENawvsefLPLLPQGLDtpigDQAAGLSVGQAQR 493
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 149 LAIARGLMAEPELLIIDELSLGLaPKIVDQLmgVLTMLNK--EGLTILLV----EQLASYalaiaDYGFVVANGKIAREG 222
Cdd:PRK11174 494 LALARALLQPCQLLLLDEPTASL-DAHSEQL--VMQALNAasRRQTTLMVthqlEDLAQW-----DQIWVMQDGQIVQQG 565
|
250
....*....|....*.
gi 492878293 223 PSTALSSDPEVMEAFL 238
Cdd:PRK11174 566 DYAELSQAGGLFATLL 581
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
7-166 |
3.19e-10 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 59.75 E-value: 3.19e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 7 EIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSADRKVAR------ 80
Cdd:NF033858 3 RLEGVSHRYGKTVALDDVSLDIPAGCMVGLIGPDGVGKSSLLSLIAGARKIQQGRVEVLGGDMADARHRRAVCPriaymp 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 81 -GLvmvpeGRLLFPDQTVEDNLVLGAYLQGgiKSPKSR----SSLEKVLALFPRLkERlhqQAGSMSGGEQQMLAIARGL 155
Cdd:NF033858 83 qGL-----GKNLYPTLSVFENLDFFGRLFG--QDAAERrrriDELLRATGLAPFA-DR---PAGKLSGGMKQKLGLCCAL 151
|
170
....*....|.
gi 492878293 156 MAEPELLIIDE 166
Cdd:NF033858 152 IHDPDLLILDE 162
|
|
| BtuD |
COG4138 |
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism]; ... |
18-166 |
3.50e-10 |
|
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism];
Pssm-ID: 443313 [Multi-domain] Cd Length: 248 Bit Score: 58.31 E-value: 3.50e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 18 AVAVR--NISISVKRGQLVAVIGNNGAGKSSMVRGATGLVrPSSGKVFFRGEDTTSLSAdRKVARGLVMVPEGRLLFPDQ 95
Cdd:COG4138 7 AVAGRlgPISAQVNAGELIHLIGPNGAGKSTLLARMAGLL-PGQGEILLNGRPLSDWSA-AELARHRAYLSQQQSPPFAM 84
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 492878293 96 TVEDNLVLgaYLQGGIKSPKSRSSLEKVLALFpRLKERLHQQAGSMSGGEQQMLAIARGLM-------AEPELLIIDE 166
Cdd:COG4138 85 PVFQYLAL--HQPAGASSEAVEQLLAQLAEAL-GLEDKLSRPLTQLSGGEWQRVRLAAVLLqvwptinPEGQLLLLDE 159
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
5-231 |
3.61e-10 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 58.98 E-value: 3.61e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 5 LLEIKNLELRYGTAV----AVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLV----RPSSGKVFFRGEDTTSLSADR 76
Cdd:PRK11022 3 LLNVDKLSVHFGDESapfrAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIdypgRVMAEKLEFNGQDLQRISEKE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 77 KvaRGLVMVpEGRLLFPDQTVEDN--LVLGAYL-------QGGIKSPKSRSSLEKV-LALFPRLKERLHQQAGSMSGGEQ 146
Cdd:PRK11022 83 R--RNLVGA-EVAMIFQDPMTSLNpcYTVGFQImeaikvhQGGNKKTRRQRAIDLLnQVGIPDPASRLDVYPHQLSGGMS 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 147 QMLAIARGLMAEPELLIIDELSLGLAPKIVDQLMGVLTMLN-KEGLT-ILLVEQLASYALAiADYGFVVANGKIAREGPS 224
Cdd:PRK11022 160 QRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQqKENMAlVLITHDLALVAEA-AHKIIVMYAGQVVETGKA 238
|
....*..
gi 492878293 225 TALSSDP 231
Cdd:PRK11022 239 HDIFRAP 245
|
|
| ABC_UvrA |
cd03238 |
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in ... |
20-197 |
4.74e-10 |
|
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213205 [Multi-domain] Cd Length: 176 Bit Score: 56.95 E-value: 4.74e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 20 AVRNISISVKRGQLVAVIGNNGAGKSSMVRgatglvrpssgkvffrgeDTTSLSADRKVARGLVMVPEGRLLFPDQ--TV 97
Cdd:cd03238 10 NLQNLDVSIPLNVLVVVTGVSGSGKSTLVN------------------EGLYASGKARLISFLPKFSRNKLIFIDQlqFL 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 98 EDnLVLGaYLqggikspksrsslekvlalfprlkeRLHQQAGSMSGGEQQMLAIARGLMAEPE--LLIIDELSLGLAPKI 175
Cdd:cd03238 72 ID-VGLG-YL-------------------------TLGQKLSTLSGGELQRVKLASELFSEPPgtLFILDEPSTGLHQQD 124
|
170 180
....*....|....*....|..
gi 492878293 176 VDQLMGVLTMLNKEGLTILLVE 197
Cdd:cd03238 125 INQLLEVIKGLIDLGNTVILIE 146
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
23-251 |
5.07e-10 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 59.60 E-value: 5.07e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 23 NISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSsgkvffrgeDTTSLsadrkVARGLVM-VPEGRLLFpDQTVEDNL 101
Cdd:PLN03232 635 DINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHA---------ETSSV-----VIRGSVAyVPQVSWIF-NATVRENI 699
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 102 VLGAylqggiKSPKSR-------SSLEKVLALFP-RLKERLHQQAGSMSGGEQQMLAIARGLMAEPELLIIDELSLGLAP 173
Cdd:PLN03232 700 LFGS------DFESERywraidvTALQHDLDLLPgRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDA 773
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 174 KIVDQlmgVLTMLNKEGLT----ILLVEQLasYALAIADYGFVVANGKIAREGPSTALSSDPEVMEAFL---GKKKSTPN 246
Cdd:PLN03232 774 HVAHQ---VFDSCMKDELKgktrVLVTNQL--HFLPLMDRIILVSEGMIKEEGTFAELSKSGSLFKKLMenaGKMDATQE 848
|
....*
gi 492878293 247 HKPKE 251
Cdd:PLN03232 849 VNTND 853
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
6-166 |
6.49e-10 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 58.88 E-value: 6.49e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 6 LEIKNLELRYGTA--VAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTT--SLSADRK-VAr 80
Cdd:PRK11176 342 IEFRNVTFTYPGKevPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRdyTLASLRNqVA- 420
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 81 glvMVPEGRLLFPDqTVEDNLvlgAYLQGGIKSpksRSSLEK------VLALFPRLKERLHQQAG----SMSGGEQQMLA 150
Cdd:PRK11176 421 ---LVSQNVHLFND-TIANNI---AYARTEQYS---REQIEEaarmayAMDFINKMDNGLDTVIGengvLLSGGQRQRIA 490
|
170
....*....|....*.
gi 492878293 151 IARGLMAEPELLIIDE 166
Cdd:PRK11176 491 IARALLRDSPILILDE 506
|
|
| oppD |
PRK09473 |
oligopeptide transporter ATP-binding component; Provisional |
1-189 |
6.95e-10 |
|
oligopeptide transporter ATP-binding component; Provisional
Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 58.20 E-value: 6.95e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 1 MSDVLLEIKNLELRYGT----AVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPS---SGKVFFRGEDTTSLS 73
Cdd:PRK09473 8 QADALLDVKDLRVTFSTpdgdVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANgriGGSATFNGREILNLP 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 74 A---DRKVARGLVMVPEGRL--LFPDQTVEDNLVLGAYLQGGIKspKSRSSLEKVLAL----FPRLKERLHQQAGSMSGG 144
Cdd:PRK09473 88 EkelNKLRAEQISMIFQDPMtsLNPYMRVGEQLMEVLMLHKGMS--KAEAFEESVRMLdavkMPEARKRMKMYPHEFSGG 165
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 492878293 145 EQQMLAIARGLMAEPELLIIDELSLGLAPKIVDQLMGVLTMLNKE 189
Cdd:PRK09473 166 MRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKRE 210
|
|
| PRK10522 |
PRK10522 |
multidrug transporter membrane component/ATP-binding component; Provisional |
6-71 |
8.89e-10 |
|
multidrug transporter membrane component/ATP-binding component; Provisional
Pssm-ID: 236707 [Multi-domain] Cd Length: 547 Bit Score: 58.44 E-value: 8.89e-10
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 492878293 6 LEIKNLELRYGT-AVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTS 71
Cdd:PRK10522 323 LELRNVTFAYQDnGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTA 389
|
|
| ABCC_CFTR1 |
cd03291 |
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The ... |
10-165 |
1.16e-09 |
|
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213258 [Multi-domain] Cd Length: 282 Bit Score: 57.17 E-value: 1.16e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 10 NLELrYGTAVaVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSlsadrkvarglvmvPEGR 89
Cdd:cd03291 44 NLCL-VGAPV-LKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFS--------------SQFS 107
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 492878293 90 LLFPDqTVEDNLVLG-AYLQGGIKSPKSRSSLEKVLALFPRLKERLHQQAG-SMSGGEQQMLAIARGLMAEPELLIID 165
Cdd:cd03291 108 WIMPG-TIKENIIFGvSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGiTLSGGQRARISLARAVYKDADLYLLD 184
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
6-231 |
1.22e-09 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 57.02 E-value: 1.22e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 6 LEIKNLELrYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGL----VRPSSGKVFFRGEDTTSLSA-DRKVAr 80
Cdd:PRK10418 5 IELRNIAL-QAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGIlpagVRQTAGRVLLDGKPVAPCALrGRKIA- 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 81 gLVMVPEGRLLFPDQTVEDNlVLGAYLQGGIKSPKSR--SSLEKV-LALFPRLkerLHQQAGSMSGGEQQMLAIARGLMA 157
Cdd:PRK10418 83 -TIMQNPRSAFNPLHTMHTH-ARETCLALGKPADDATltAALEAVgLENAARV---LKLYPFEMSGGMLQRMMIALALLC 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 492878293 158 EPELLIIDE----LSLGLAPKIVDQLMGVltmLNKEGLTILLVEQLASYALAIADYGFVVANGKIAREGPSTALSSDP 231
Cdd:PRK10418 158 EAPFIIADEpttdLDVVAQARILDLLESI---VQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNAP 232
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
140-210 |
1.24e-09 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 58.30 E-value: 1.24e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 492878293 140 SMSGGEQQMLAIARGLMAEPE--LLIIDELSLGLAPKIVDQLMGVLTMLNKEGLTILLVE---QLASYALAIADYG 210
Cdd:PRK00635 476 TLSGGEQERTALAKHLGAELIgiTYILDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLVEhdeQMISLADRIIDIG 551
|
|
| PRK10789 |
PRK10789 |
SmdA family multidrug ABC transporter permease/ATP-binding protein; |
20-231 |
1.51e-09 |
|
SmdA family multidrug ABC transporter permease/ATP-binding protein;
Pssm-ID: 182732 [Multi-domain] Cd Length: 569 Bit Score: 57.80 E-value: 1.51e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 20 AVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSADRKVARgLVMVPEGRLLFPDqTVED 99
Cdd:PRK10789 330 ALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSR-LAVVSQTPFLFSD-TVAN 407
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 100 NLVLGaylqggiKSPKSRSSLEKVLAL------FPRLKERLHQQAGS----MSGGEQQMLAIARGLMAEPELLIIDElsl 169
Cdd:PRK10789 408 NIALG-------RPDATQQEIEHVARLasvhddILRLPQGYDTEVGErgvmLSGGQKQRISIARALLLNAEILILDD--- 477
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 492878293 170 glAPKIVD-----QLMGVLTMLNKEGLTILLVEQLAsyALAIADYGFVVANGKIAREGPSTALSSDP 231
Cdd:PRK10789 478 --ALSAVDgrtehQILHNLRQWGEGRTVIISAHRLS--ALTEASEILVMQHGHIAQRGNHDQLAQQS 540
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
7-166 |
1.64e-09 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 57.83 E-value: 1.64e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 7 EIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGE--DTTSLSADRKVarglvm 84
Cdd:NF033858 268 EARGLTMRFGDFTAVDHVSFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGEAWLFGQpvDAGDIATRRRV------ 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 85 vpeGRL-----LFPDQTVEDNLVLGAYLQgGIKSPKSRSSLEKVLALFpRLKERLHQQAGSMSGGEQQMLAIARGLMAEP 159
Cdd:NF033858 342 ---GYMsqafsLYGELTVRQNLELHARLF-HLPAAEIAARVAEMLERF-DLADVADALPDSLPLGIRQRLSLAVAVIHKP 416
|
....*..
gi 492878293 160 ELLIIDE 166
Cdd:NF033858 417 ELLILDE 423
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
22-233 |
2.48e-09 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 57.04 E-value: 2.48e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 22 RNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSL---SADRKVArglvMVPEGRLLFpDQTVE 98
Cdd:TIGR00958 498 KGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYdhhYLHRQVA----LVGQEPVLF-SGSVR 572
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 99 DNLVLG--AYLQGGIKSPKSRSSLEKVLALFPRLKERLHQQAGS-MSGGEQQMLAIARGLMAEPELLIIDELSLGLAPKi 175
Cdd:TIGR00958 573 ENIAYGltDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSqLSGGQKQRIAIARALVRKPRVLILDEATSALDAE- 651
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 492878293 176 VDQLMGVLTmlNKEGLTILLVEQLASYALAiADYGFVVANGKIAREGPSTALSSDPEV 233
Cdd:TIGR00958 652 CEQLLQESR--SRASRTVLLIAHRLSTVER-ADQILVLKKGSVVEMGTHKQLMEDQGC 706
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
4-227 |
2.62e-09 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 57.14 E-value: 2.62e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 4 VLLEIKNLELRY--GTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVrgaTGLVR---PSSGKVFFRGEDTTSLSaDRKV 78
Cdd:PRK11160 337 VSLTLNNVSFTYpdQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLL---QLLTRawdPQQGEILLNGQPIADYS-EAAL 412
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 79 ARGLVMVPEGRLLFPDqTVEDNLVLGAylqggiksPKS----------RSSLEKVLALFPRLKERLHQQAGSMSGGEQQM 148
Cdd:PRK11160 413 RQAISVVSQRVHLFSA-TLRDNLLLAA--------PNAsdealievlqQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRR 483
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 149 LAIARGLMAEPELLIIDELSLGLAPKIVDQLMGVL--TMLNKeglTILLVEQLAsYALAIADYGFVVANGKIAREGPSTA 226
Cdd:PRK11160 484 LGIARALLHDAPLLLLDEPTEGLDAETERQILELLaeHAQNK---TVLMITHRL-TGLEQFDRICVMDNGQIIEQGTHQE 559
|
.
gi 492878293 227 L 227
Cdd:PRK11160 560 L 560
|
|
| PRK13541 |
PRK13541 |
cytochrome c biogenesis protein CcmA; Provisional |
23-201 |
3.17e-09 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184128 [Multi-domain] Cd Length: 195 Bit Score: 55.26 E-value: 3.17e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 23 NISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSadrKVARGLVMVPEGRLLfpDQTVEDNLV 102
Cdd:PRK13541 18 DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA---KPYCTYIGHNLGLKL--EMTVFENLK 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 103 LGAylqggiKSPKSRSSLEKVLALFpRLKERLHQQAGSMSGGEQQMLAIARGLMAEPELLIIDELSLGLAPKIVDQLMGV 182
Cdd:PRK13541 93 FWS------EIYNSAETLYAAIHYF-KLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNL 165
|
170
....*....|....*....
gi 492878293 183 LTMLNKEGLTILLVEQLAS 201
Cdd:PRK13541 166 IVMKANSGGIVLLSSHLES 184
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
25-230 |
3.48e-09 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 56.56 E-value: 3.48e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 25 SISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSADRKvaRGLVMVPEGR----LLFPDqtvEDN 100
Cdd:PRK10938 23 SLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQL--QKLVSDEWQRnntdMLSPG---EDD 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 101 LVLGA--YLQGGIKSPKSRSSLEKVLALFPRLKERLHQqagsMSGGEQQMLAIARGLMAEPELLIIDELSLGLAPKIVDQ 178
Cdd:PRK10938 98 TGRTTaeIIQDEVKDPARCEQLAQQFGITALLDRRFKY----LSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQ 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 492878293 179 LMGVLTMLNKEGLTILLVEQLASYALAIADYGFVVANGKIAREGPSTALSSD 230
Cdd:PRK10938 174 LAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQ 225
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
5-166 |
7.00e-09 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 56.14 E-value: 7.00e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 5 LLEIKNLELRY--GTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSADrKVARGL 82
Cdd:PLN03232 1234 SIKFEDVHLRYrpGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLT-DLRRVL 1312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 83 VMVPEGRLLFpDQTVEDNL-VLGAYLQGGIKSPKSRSSLEKVLALFP-RLKERLHQQAGSMSGGEQQMLAIARGLMAEPE 160
Cdd:PLN03232 1313 SIIPQSPVLF-SGTVRFNIdPFSEHNDADLWEALERAHIKDVIDRNPfGLDAEVSEGGENFSVGQRQLLSLARALLRRSK 1391
|
....*.
gi 492878293 161 LLIIDE 166
Cdd:PLN03232 1392 ILVLDE 1397
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
3-166 |
9.51e-09 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 55.18 E-value: 9.51e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 3 DVLLEIKNLELR---YGTAVAVRNISISVKRGQLVAVIGNNGAGKS----SMVRGATGlvRPSSGKVFFRGEDTTSLSAD 75
Cdd:NF040905 255 EVVFEVKNWTVYhplHPERKVVDDVSLNVRRGEIVGIAGLMGAGRTelamSVFGRSYG--RNISGTVFKDGKEVDVSTVS 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 76 RKVARGLVMVpegrllfpdqtVEDNLVLGAYLQGGIKSPKSRSSLEKV-----------LALFPRLKERLH-------QQ 137
Cdd:NF040905 333 DAIDAGLAYV-----------TEDRKGYGLNLIDDIKRNITLANLGKVsrrgvideneeIKVAEEYRKKMNiktpsvfQK 401
|
170 180
....*....|....*....|....*....
gi 492878293 138 AGSMSGGEQQMLAIARGLMAEPELLIIDE 166
Cdd:NF040905 402 VGNLSGGNQQKVVLSKWLFTDPDVLILDE 430
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
23-223 |
1.15e-08 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 55.05 E-value: 1.15e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 23 NISISVKRGQLVAVIGNNGAGKSSMV-----RGATGLVRpsSGKVFFRGEDTTSlsadRKVARGLVMVPEGRLLFPDQTV 97
Cdd:TIGR00955 43 NVSGVAKPGELLAVMGSSGAGKTTLMnalafRSPKGVKG--SGSVLLNGMPIDA----KEMRAISAYVQQDDLFIPTLTV 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 98 EDNLVLGAYLqggiKSPKSRSSLEKVLalfpRLKERLHQ---------------QAGSMSGGEQQMLAIARGLMAEPELL 162
Cdd:TIGR00955 117 REHLMFQAHL----RMPRRVTKKEKRE----RVDEVLQAlglrkcantrigvpgRVKGLSGGERKRLAFASELLTDPPLL 188
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 492878293 163 IIDELSLGLAPKIVDQLMGVLTMLNKEGLT-ILLVEQLASYALAIADYGFVVANGKIAREGP 223
Cdd:TIGR00955 189 FCDEPTSGLDSFMAYSVVQVLKGLAQKGKTiICTIHQPSSELFELFDKIILMAEGRVAYLGS 250
|
|
| ATM1 |
COG5265 |
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components ... |
22-166 |
1.25e-08 |
|
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444078 [Multi-domain] Cd Length: 605 Bit Score: 54.83 E-value: 1.25e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 22 RNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSAD--RKvARGlvMVPEGRLLFPDqTVED 99
Cdd:COG5265 375 KGVSFEVPAGKTVAIVGPSGAGKSTLARLLFRFYDVTSGRILIDGQDIRDVTQAslRA-AIG--IVPQDTVLFND-TIAY 450
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 492878293 100 NLvlgAYLQGGIkspkSRSSLEKV--LALFPRLKERLHQQAGSM--------SGGEQQMLAIARGLMAEPELLIIDE 166
Cdd:COG5265 451 NI---AYGRPDA----SEEEVEAAarAAQIHDFIESLPDGYDTRvgerglklSGGEKQRVAIARTLLKNPPILIFDE 520
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
3-166 |
1.37e-08 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 54.94 E-value: 1.37e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 3 DVLLEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFrGEdTTSLSadrkvargl 82
Cdd:TIGR03719 320 DKVIEAENLTKAFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIEI-GE-TVKLA--------- 388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 83 vMVPEGR-LLFPDQTVEDNLVLGA-YLQGGIKSPKSRSslekVLALFpRLKERLHQQ-AGSMSGGEQQMLAIARGLMAEP 159
Cdd:TIGR03719 389 -YVDQSRdALDPNKTVWEEISGGLdIIKLGKREIPSRA----YVGRF-NFKGSDQQKkVGQLSGGERNRVHLAKTLKSGG 462
|
....*..
gi 492878293 160 ELLIIDE 166
Cdd:TIGR03719 463 NVLLLDE 469
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
2-239 |
1.40e-08 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 54.02 E-value: 1.40e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 2 SDVLLEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSAdRKVARG 81
Cdd:PRK10575 8 SDTTFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSS-KAFARK 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 82 LVMVPEGRLLFPDQTVEDNLVLGAYLQGGIK---SPKSRSSLEKVLALFPrLKERLHQQAGSMSGGEQQMLAIARGLMAE 158
Cdd:PRK10575 87 VAYLPQQLPAAEGMTVRELVAIGRYPWHGALgrfGAADREKVEEAISLVG-LKPLAHRLVDSLSGGERQRAWIAMLVAQD 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 159 PELLIIDE--LSLGLAPKiVDQLMGVLTMLNKEGLTILLVEQLASYALAIADYGFVVANGKIAREGPSTALSSdPEVMEA 236
Cdd:PRK10575 166 SRCLLLDEptSALDIAHQ-VDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMR-GETLEQ 243
|
...
gi 492878293 237 FLG 239
Cdd:PRK10575 244 IYG 246
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
5-186 |
1.61e-08 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 54.71 E-value: 1.61e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 5 LLEIKNLELRY-----------GTAVAVRNISISVKRGQLVAVIGNNGAGKSSMvrgATGLVR--PSSGKVFFRGEDTTS 71
Cdd:PRK15134 275 LLDVEQLQVAFpirkgilkrtvDHNVVVKNISFTLRPGETLGLVGESGSGKSTT---GLALLRliNSQGEIWFDGQPLHN 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 72 LSadRKVarglvMVPEGR---LLFPD------------QTVEDNL-VLGAYLQGGIKSPKSRSSLEKVlALFPrlkERLH 135
Cdd:PRK15134 352 LN--RRQ-----LLPVRHriqVVFQDpnsslnprlnvlQIIEEGLrVHQPTLSAAQREQQVIAVMEEV-GLDP---ETRH 420
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 492878293 136 QQAGSMSGGEQQMLAIARGLMAEPELLIIDELSLGLAPKIVDQLMGVLTML 186
Cdd:PRK15134 421 RYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSL 471
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
6-166 |
2.34e-08 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 54.57 E-value: 2.34e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 6 LEIKNLELRY--GTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSAdRKVARGLV 83
Cdd:TIGR00957 1285 VEFRNYCLRYreDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGL-HDLRFKIT 1363
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 84 MVPEGRLLFpDQTVEDNL-VLGAYLQGGIKSPKSRSSLEKVLALFP-RLKERLHQQAGSMSGGEQQMLAIARGLMAEPEL 161
Cdd:TIGR00957 1364 IIPQDPVLF-SGSLRMNLdPFSQYSDEEVWWALELAHLKTFVSALPdKLDHECAEGGENLSVGQRQLVCLARALLRKTKI 1442
|
....*
gi 492878293 162 LIIDE 166
Cdd:TIGR00957 1443 LVLDE 1447
|
|
| SapD |
COG4170 |
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms]; |
5-196 |
2.70e-08 |
|
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms];
Pssm-ID: 443330 [Multi-domain] Cd Length: 331 Bit Score: 53.37 E-value: 2.70e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 5 LLEIKNLELRYGTA----VAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPS----SGKVFFRGEDTTSLSAD- 75
Cdd:COG4170 3 LLDIRNLTIEIDTPqgrvKAVDRVSLTLNEGEIRGLVGESGSGKSLIAKAICGITKDNwhvtADRFRWNGIDLLKLSPRe 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 76 -RK-VARGLVMV---PEgRLLFPDQTVEDNLV---LGAYLQG--------------------GIKSPKsrssleKVLALF 127
Cdd:COG4170 83 rRKiIGREIAMIfqePS-SCLDPSAKIGDQLIeaiPSWTFKGkwwqrfkwrkkraiellhrvGIKDHK------DIMNSY 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 492878293 128 PrlkerlHQqagsMSGGEQQ--MLAIArgLMAEPELLIIDELSLGLAPKIVDQLMGVLTMLNK-EGLTILLV 196
Cdd:COG4170 156 P------HE----LTEGECQkvMIAMA--IANQPRLLIADEPTNAMESTTQAQIFRLLARLNQlQGTSILLI 215
|
|
| tagH |
PRK13545 |
teichoic acids export protein ATP-binding subunit; Provisional |
1-170 |
4.20e-08 |
|
teichoic acids export protein ATP-binding subunit; Provisional
Pssm-ID: 184130 [Multi-domain] Cd Length: 549 Bit Score: 53.36 E-value: 4.20e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 1 MSDVLLEIKNLELRYgtavAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGedTTSLSAdrkVAR 80
Cdd:PRK13545 24 LKDLFFRSKDGEYHY----ALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKG--SAALIA---ISS 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 81 GLvmvpEGRLlfpdqTVEDNLVLGAyLQGGIKSPKSRSSLEKVLAlFPRLKERLHQQAGSMSGGEQQMLAIARGLMAEPE 160
Cdd:PRK13545 95 GL----NGQL-----TGIENIELKG-LMMGLTKEKIKEIIPEIIE-FADIGKFIYQPVKTYSSGMKSRLGFAISVHINPD 163
|
170
....*....|.
gi 492878293 161 LLIIDE-LSLG 170
Cdd:PRK13545 164 ILVIDEaLSVG 174
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
20-195 |
6.39e-08 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 53.09 E-value: 6.39e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 20 AVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDT-TSLSadrKVARGLVMVPEGRLLFPDQTVE 98
Cdd:TIGR01257 1954 AVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSIlTNIS---DVHQNMGYCPQFDAIDDLLTGR 2030
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 99 DNLVLGAYLQGgikspKSRSSLEKV---------LALFprlKERLhqqAGSMSGGEQQMLAIARGLMAEPELLIIDELSL 169
Cdd:TIGR01257 2031 EHLYLYARLRG-----VPAEEIEKVanwsiqslgLSLY---ADRL---AGTYSGGNKRKLSTAIALIGCPPLVLLDEPTT 2099
|
170 180
....*....|....*....|....*.
gi 492878293 170 GLAPKIVDQLMGVLTMLNKEGLTILL 195
Cdd:TIGR01257 2100 GMDPQARRMLWNTIVSIIREGRAVVL 2125
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
1-168 |
7.03e-08 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 52.86 E-value: 7.03e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 1 MSDVLLEIKNLELRYGtavavrNISISVKRGQL-----VAVIGNNGAGKSSMVRGATGLVRPSSGKVFfrGEDTTS---- 71
Cdd:COG1245 337 EEETLVEYPDLTKSYG------GFSLEVEGGEIregevLGIVGPNGIGKTTFAKILAGVLKPDEGEVD--EDLKISykpq 408
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 72 -LSADRkvarglvmvpegrllfpDQTVEDNLvlgaylqGGIKSPKSRSSLEKVLALFP-RLKERLHQQAGSMSGGEQQML 149
Cdd:COG1245 409 yISPDY-----------------DGTVEEFL-------RSANTDDFGSSYYKTEIIKPlGLEKLLDKNVKDLSGGELQRV 464
|
170
....*....|....*....
gi 492878293 150 AIARGLMAEPELLIIDELS 168
Cdd:COG1245 465 AIAACLSRDADLYLLDEPS 483
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
2-168 |
9.78e-08 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 52.12 E-value: 9.78e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 2 SDVLLEIKNLELRYGtavavrNISISVKRGQL-----VAVIGNNGAGKSSMVRGATGLVRPSSGKVFFrgEDTTS----- 71
Cdd:PRK13409 337 RETLVEYPDLTKKLG------DFSLEVEGGEIyegevIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDP--ELKISykpqy 408
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 72 LSADrkvarglvmvpegrllfPDQTVEDNLvlgaylqGGIKsPKSRSSLEKVLALFP-RLKERLHQQAGSMSGGEQQMLA 150
Cdd:PRK13409 409 IKPD-----------------YDGTVEDLL-------RSIT-DDLGSSYYKSEIIKPlQLERLLDKNVKDLSGGELQRVA 463
|
170
....*....|....*...
gi 492878293 151 IARGLMAEPELLIIDELS 168
Cdd:PRK13409 464 IAACLSRDADLYLLDEPS 481
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
5-192 |
1.00e-07 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 52.10 E-value: 1.00e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 5 LLEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGlVRPS---SGKVFFRGEDTTSLSADRKVARG 81
Cdd:NF040905 1 ILEMRGITKTFPGVKALDDVNLSVREGEIHALCGENGAGKSTLMKVLSG-VYPHgsyEGEILFDGEVCRFKDIRDSEALG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 82 LVMVPEGRLLFPDQTVEDNLVLG-AYLQGGI-----KSPKSRSSLEKVlalfpRLKERLHQQAGSMSGGEQQMLAIARGL 155
Cdd:NF040905 80 IVIIHQELALIPYLSIAENIFLGnERAKRGVidwneTNRRARELLAKV-----GLDESPDTLVTDIGVGKQQLVEIAKAL 154
|
170 180 190
....*....|....*....|....*....|....*..
gi 492878293 156 MAEPELLIIDELSLGLAPKIVDQLMGVLTMLNKEGLT 192
Cdd:NF040905 155 SKDVKLLILDEPTAALNEEDSAALLDLLLELKAQGIT 191
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
5-189 |
1.36e-07 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 51.78 E-value: 1.36e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 5 LLEIKNLELRY----GTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFF-------RGEDTTSLS 73
Cdd:PRK10261 12 VLAVENLNIAFmqeqQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCdkmllrrRSRQVIELS 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 74 ----ADRKVARG--LVMVPEGRL--LFPDQTVEDNLVLGAYLQGGIKSPKSRSSLEKVLAL--FPRLKERLHQQAGSMSG 143
Cdd:PRK10261 92 eqsaAQMRHVRGadMAMIFQEPMtsLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQvrIPEAQTILSRYPHQLSG 171
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 492878293 144 GEQQMLAIARGLMAEPELLIIDELSLGLAPKIVDQLMGVLTMLNKE 189
Cdd:PRK10261 172 GMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKE 217
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
6-168 |
2.60e-07 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 50.61 E-value: 2.60e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 6 LEIKNLELRYGTAV-AVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLS-ADRKVArglv 83
Cdd:PRK11650 4 LKLQAVRKSYDGKTqVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEpADRDIA---- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 84 MVPEGRLLFPDQTVEDNLVLGAYLQGGIKSPKSRSSLE--KVLALFPRLKERLHQqagsMSGGEQQMLAIARGLMAEPEL 161
Cdd:PRK11650 80 MVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEaaRILELEPLLDRKPRE----LSGGQRQRVAMGRAIVREPAV 155
|
....*...
gi 492878293 162 LIIDE-LS 168
Cdd:PRK11650 156 FLFDEpLS 163
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
3-62 |
4.22e-07 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 50.12 E-value: 4.22e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 3 DVLLEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKV 62
Cdd:PRK11819 322 DKVIEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTI 381
|
|
| PRK15093 |
PRK15093 |
peptide ABC transporter ATP-binding protein SapD; |
5-196 |
4.39e-07 |
|
peptide ABC transporter ATP-binding protein SapD;
Pssm-ID: 185049 [Multi-domain] Cd Length: 330 Bit Score: 49.80 E-value: 4.39e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 5 LLEIKNLELRYGTA----VAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLV----RPSSGKVFFRGEDTTSLSADR 76
Cdd:PRK15093 3 LLDIRNLTIEFKTSdgwvKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTkdnwRVTADRMRFDDIDLLRLSPRE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 77 K---VARGLVMV---PEGrLLFPDQTVEDNLV--LGAYLQGGIKSPKSRSSLEKVLALFPRL-----KERLHQQAGSMSG 143
Cdd:PRK15093 83 RrklVGHNVSMIfqePQS-CLDPSERVGRQLMqnIPGWTYKGRWWQRFGWRKRRAIELLHRVgikdhKDAMRSFPYELTE 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 492878293 144 GEQQMLAIARGLMAEPELLIIDELSLGLAPKIVDQLMGVLTMLNK-EGLTILLV 196
Cdd:PRK15093 162 GECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQnNNTTILLI 215
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
5-223 |
4.90e-07 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 49.44 E-value: 4.90e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 5 LLEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRG----ATGLVRPS----SGKVFFRGEDTTSLSADR 76
Cdd:PRK13547 1 MLTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKAlagdLTGGGAPRgarvTGDVTLNGEPLAAIDAPR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 77 KVARGLVMVPEGRLLFPdQTVEDNLVLGAY---LQGGIKSPKSRSSLEKVLALfPRLKERLHQQAGSMSGGEQQMLAIAR 153
Cdd:PRK13547 81 LARLRAVLPQAAQPAFA-FSAREIVLLGRYphaRRAGALTHRDGEIAWQALAL-AGATALVGRDVTTLSGGELARVQFAR 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 154 GL---------MAEPELLIIDE----LSLGLAPKIVDQL--------MGVLTMLNKEGLTillveqlASYALAIAdygfV 212
Cdd:PRK13547 159 VLaqlwpphdaAQPPRYLLLDEptaaLDLAHQHRLLDTVrrlardwnLGVLAIVHDPNLA-------ARHADRIA----M 227
|
250
....*....|.
gi 492878293 213 VANGKIAREGP 223
Cdd:PRK13547 228 LADGAIVAHGA 238
|
|
| sufC |
PRK09580 |
cysteine desulfurase ATPase component; Reviewed |
5-222 |
5.28e-07 |
|
cysteine desulfurase ATPase component; Reviewed
Pssm-ID: 181965 [Multi-domain] Cd Length: 248 Bit Score: 49.40 E-value: 5.28e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 5 LLEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGL--VRPSSGKVFFRGEDTTSLSADRKVARGL 82
Cdd:PRK09580 1 MLSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGRedYEVTGGTVEFKGKDLLELSPEDRAGEGI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 83 VMVPEGRLLFPDqtVEDNLVLGAYLQgGIKSPKSRSSLEKV-LALFPRLKERLHQQAGSM---------SGGEQQMLAIA 152
Cdd:PRK09580 81 FMAFQYPVEIPG--VSNQFFLQTALN-AVRSYRGQEPLDRFdFQDLMEEKIALLKMPEDLltrsvnvgfSGGEKKRNDIL 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 492878293 153 RGLMAEPELLIIDELSLGL---APKIVDQlmGVLTMLNKEGLTILLVEQLASYALAIADYGFVVANGKIAREG 222
Cdd:PRK09580 158 QMAVLEPELCILDESDSGLdidALKIVAD--GVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSG 228
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
23-230 |
5.55e-07 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 50.12 E-value: 5.55e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 23 NISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRP-SSGKVFFRGedttslsadrKVArglvMVPEGRLLFpDQTVEDNL 101
Cdd:PLN03130 635 NINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPrSDASVVIRG----------TVA----YVPQVSWIF-NATVRDNI 699
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 102 VLGA-YLQGGIKSPKSRSSLEKVLALFP--RLKErLHQQAGSMSGGEQQMLAIARGLMAEPELLIIDELSLGLAPKIVDQ 178
Cdd:PLN03130 700 LFGSpFDPERYERAIDVTALQHDLDLLPggDLTE-IGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQ 778
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 492878293 179 lmgVLTMLNKEGLT----ILLVEQLasYALAIADYGFVVANGKIAREGPSTALSSD 230
Cdd:PLN03130 779 ---VFDKCIKDELRgktrVLVTNQL--HFLSQVDRIILVHEGMIKEEGTYEELSNN 829
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
19-166 |
1.10e-06 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 48.39 E-value: 1.10e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 19 VAVRN----ISISVKRGQLVAVIGNNGAGKSSMVRGATGLVrPSSGKVFFRGEDTTSLSAdRKVARglvmvpeGRLLFPD 94
Cdd:PRK03695 6 VAVSTrlgpLSAEVRAGEILHLVGPNGAGKSTLLARMAGLL-PGSGSIQFAGQPLEAWSA-AELAR-------HRAYLSQ 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 95 QTVEDNLV-----LGAYLQGGIKSPKSRSSLEKVLALFpRLKERLHQQAGSMSGGEQQ-------MLAIARGLMAEPELL 162
Cdd:PRK03695 77 QQTPPFAMpvfqyLTLHQPDKTRTEAVASALNEVAEAL-GLDDKLGRSVNQLSGGEWQrvrlaavVLQVWPDINPAGQLL 155
|
....
gi 492878293 163 IIDE 166
Cdd:PRK03695 156 LLDE 159
|
|
| ABCC_CFTR2 |
cd03289 |
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator ... |
6-173 |
1.30e-06 |
|
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213256 [Multi-domain] Cd Length: 275 Bit Score: 48.31 E-value: 1.30e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 6 LEIKNLELRY---GTAVaVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRpSSGKVFFRGE--DTTSLSADRKvAR 80
Cdd:cd03289 3 MTVKDLTAKYtegGNAV-LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVswNSVPLQKWRK-AF 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 81 GLvmVPEGRLLFPDqTVEDNL-VLGAYLQGGIKSPKSRSSLEKVLALFP-RLKERLHQQAGSMSGGEQQMLAIARGLMAE 158
Cdd:cd03289 80 GV--IPQKVFIFSG-TFRKNLdPYGKWSDEEIWKVAEEVGLKSVIEQFPgQLDFVLVDGGCVLSHGHKQLMCLARSVLSK 156
|
170
....*....|....*
gi 492878293 159 PELLIIDELSLGLAP 173
Cdd:cd03289 157 AKILLLDEPSAHLDP 171
|
|
| PvdE |
COG4615 |
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion ... |
6-67 |
2.23e-06 |
|
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion transport and metabolism];
Pssm-ID: 443659 [Multi-domain] Cd Length: 547 Bit Score: 48.26 E-value: 2.23e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 492878293 6 LEIKNLELRY-----GTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGE 67
Cdd:COG4615 328 LELRGVTYRYpgedgDEGFTLGPIDLTIRRGELVFIVGGNGSGKSTLAKLLTGLYRPESGEILLDGQ 394
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
6-173 |
2.31e-06 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 48.37 E-value: 2.31e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 6 LEIKNLELRY---GTAVaVRNISISVKRGQLVAVIGNNGAGKSSMVrgaTGLVRPSS--GKVFFRGE--DTTSLSADRKv 78
Cdd:TIGR01271 1218 MDVQGLTAKYteaGRAV-LQDLSFSVEGGQRVGLLGRTGSGKSTLL---SALLRLLSteGEIQIDGVswNSVTLQTWRK- 1292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 79 ARGLvmVPEGRLLFPDqTVEDNL-VLGAYLQGGIKSPKSRSSLEKVLALFP-RLKERLHQQAGSMSGGEQQMLAIARGLM 156
Cdd:TIGR01271 1293 AFGV--IPQKVFIFSG-TFRKNLdPYEQWSDEEIWKVAEEVGLKSVIEQFPdKLDFVLVDGGYVLSNGHKQLMCLARSIL 1369
|
170
....*....|....*..
gi 492878293 157 AEPELLIIDELSLGLAP 173
Cdd:TIGR01271 1370 SKAKILLLDEPSAHLDP 1386
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
19-231 |
2.64e-06 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 48.24 E-value: 2.64e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 19 VAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFfrgedttslsADRKVArglvMVPEGRLLFpDQTVE 98
Cdd:PTZ00243 674 VLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVW----------AERSIA----YVPQQAWIM-NATVR 738
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 99 DNLVL-----GAYLQGGIKSpksrSSLEKVLALFPR-LKERLHQQAGSMSGGEQQMLAIARGLMAEPELLIIDE----LS 168
Cdd:PTZ00243 739 GNILFfdeedAARLADAVRV----SQLEADLAQLGGgLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDplsaLD 814
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 492878293 169 LGLAPKIV-DQLMGVLTmlnkeGLT-ILLVEQLasYALAIADYGFVVANGKIAREGPSTALSSDP 231
Cdd:PTZ00243 815 AHVGERVVeECFLGALA-----GKTrVLATHQV--HVVPRADYVVALGDGRVEFSGSSADFMRTS 872
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
6-166 |
2.70e-06 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 48.20 E-value: 2.70e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 6 LEIKNLELRYGTAV--AVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLS-AD-RKVarg 81
Cdd:PLN03130 1238 IKFEDVVLRYRPELppVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGlMDlRKV--- 1314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 82 LVMVPEGRLLFpDQTVEDNL-VLGAYLQGGIKSPKSRSSLEKVLALFPR-LKERLHQQAGSMSGGEQQMLAIARGLMAEP 159
Cdd:PLN03130 1315 LGIIPQAPVLF-SGTVRFNLdPFNEHNDADLWESLERAHLKDVIRRNSLgLDAEVSEAGENFSVGQRQLLSLARALLRRS 1393
|
....*..
gi 492878293 160 ELLIIDE 166
Cdd:PLN03130 1394 KILVLDE 1400
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
134-216 |
2.80e-06 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 48.09 E-value: 2.80e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 134 LHQQAGSMSGGEQQMLAIARGLMAEPE--LLIIDELSLGLAPKIVDQLMGVLTMLNKEGLTILLVEQlASYALAIADY-- 209
Cdd:TIGR00630 482 LSRAAGTLSGGEAQRIRLATQIGSGLTgvLYVLDEPSIGLHQRDNRRLINTLKRLRDLGNTLIVVEH-DEDTIRAADYvi 560
|
90
....*....|....*..
gi 492878293 210 ----------GFVVANG 216
Cdd:TIGR00630 561 digpgagehgGEVVASG 577
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
6-231 |
4.46e-06 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 47.33 E-value: 4.46e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 6 LEIKNLELRYGTAVAV---RNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFrgEDTTSLS-ADRKVARG 81
Cdd:PTZ00265 383 IQFKNVRFHYDTRKDVeiyKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIII--NDSHNLKdINLKWWRS 460
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 82 LV-MVPEGRLLFPDqTVEDNLVLGAY------------------------------------LQGGIKSPKSRSSLE--- 121
Cdd:PTZ00265 461 KIgVVSQDPLLFSN-SIKNNIKYSLYslkdlealsnyynedgndsqenknkrnscrakcagdLNDMSNTTDSNELIEmrk 539
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 122 ---------------KVL------ALFPRLKERLHQQAGSMSGGEQQMLAIARGLMAEPELLIIDELSLG-------LAP 173
Cdd:PTZ00265 540 nyqtikdsevvdvskKVLihdfvsALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSldnkseyLVQ 619
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 174 KIVDQLMGvltmlNKEGLTILLVEQLAS--YALAIadygFVVANGKIAREGPSTALSSDP 231
Cdd:PTZ00265 620 KTINNLKG-----NENRITIIIAHRLSTirYANTI----FVLSNRERGSTVDVDIIGEDP 670
|
|
| ABC_UvrA_I |
cd03270 |
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair ... |
133-216 |
9.78e-06 |
|
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213237 [Multi-domain] Cd Length: 226 Bit Score: 45.33 E-value: 9.78e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 133 RLHQQAGSMSGGEQQMLAIARGLMAEPE--LLIIDELSLGLAPKIVDQLMGVLTMLNKEGLTILLVEQlASYALAIADY- 209
Cdd:cd03270 130 TLSRSAPTLSGGEAQRIRLATQIGSGLTgvLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEH-DEDTIRAADHv 208
|
90
....*....|....*...
gi 492878293 210 -----------GFVVANG 216
Cdd:cd03270 209 idigpgagvhgGEIVAQG 226
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
6-62 |
1.33e-05 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 45.65 E-value: 1.33e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 492878293 6 LEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKV 62
Cdd:PRK15064 320 LEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTV 376
|
|
| ABC_RNaseL_inhibitor_domain1 |
cd03236 |
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
27-209 |
1.48e-05 |
|
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213203 [Multi-domain] Cd Length: 255 Bit Score: 45.05 E-value: 1.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 27 SVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKV-----------FFRGED-----TTSLSADRKVarglVMVPEGRL 90
Cdd:cd03236 22 VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFddppdwdeildEFRGSElqnyfTKLLEGDVKV----IVKPQYVD 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 91 LFPDQ---TVEDNLvlgaylqggiKSPKSRSSLEKVLALFpRLKERLHQQAGSMSGGEQQMLAIARGLMAEPELLIIDEL 167
Cdd:cd03236 98 LIPKAvkgKVGELL----------KKKDERGKLDELVDQL-ELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEP 166
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 492878293 168 SLGLAPKIVDQLMGVLTMLNKEGLTILLVEqlasYALAIADY 209
Cdd:cd03236 167 SSYLDIKQRLNAARLIRELAEDDNYVLVVE----HDLAVLDY 204
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
5-171 |
1.84e-05 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 44.56 E-value: 1.84e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 5 LLEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTsLSADRKVARGLvm 84
Cdd:COG2401 30 VLEAFGVELRVVERYVLRDLNLEIEPGEIVLIVGASGSGKSTLLRLLAGALKGTPVAGCVDVPDNQ-FGREASLIDAI-- 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 85 vpeGRLLFPDQTVEdnlVLgaylqggikspkSRSSLEKVLALFPRLKErlhqqagsMSGGEQQMLAIARGLMAEPELLII 164
Cdd:COG2401 107 ---GRKGDFKDAVE---LL------------NAVGLSDAVLWLRRFKE--------LSTGQKFRFRLALLLAERPKLLVI 160
|
....*..
gi 492878293 165 DELSLGL 171
Cdd:COG2401 161 DEFCSHL 167
|
|
| PRK13546 |
PRK13546 |
teichoic acids export ABC transporter ATP-binding subunit TagH; |
17-170 |
4.06e-05 |
|
teichoic acids export ABC transporter ATP-binding subunit TagH;
Pssm-ID: 184131 [Multi-domain] Cd Length: 264 Bit Score: 43.65 E-value: 4.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 17 TAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEdtTSLSAdrkVARGLvmvpEGRLlfpdqT 96
Cdd:PRK13546 36 TFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGE--VSVIA---ISAGL----SGQL-----T 101
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 492878293 97 VEDNLVLGAYLQGgiKSPKSRSSLEKVLALFPRLKERLHQQAGSMSGGEQQMLAIARGLMAEPELLIIDE-LSLG 170
Cdd:PRK13546 102 GIENIEFKMLCMG--FKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEaLSVG 174
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
140-209 |
6.42e-05 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 44.05 E-value: 6.42e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 492878293 140 SMSGGEQQMLAIARGLMA---EPELLIIDELSLGLAPKIVDQLMGVLTMLNKEGLTILLVEQlASYALAIADY 209
Cdd:PRK00635 809 SLSGGEIQRLKLAYELLApskKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEH-NMHVVKVADY 880
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
23-194 |
8.33e-05 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 42.23 E-value: 8.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 23 NISISVKRGQLVAVIGNNGAGKSSMV-----RGATGLVrpsSGKVFFRGedttsLSADRKVARGLVMVPEGRLLFPDQTV 97
Cdd:cd03232 25 NISGYVKPGTLTALMGESGAGKTTLLdvlagRKTAGVI---TGEILING-----RPLDKNFQRSTGYVEQQDVHSPNLTV 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 98 EDNLVLGAYLQGgikspksrsslekvlalfprlkerlhqqagsMSGGEQQMLAIARGLMAEPELLIIDELSLGLAPKIVD 177
Cdd:cd03232 97 REALRFSALLRG-------------------------------LSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAY 145
|
170
....*....|....*..
gi 492878293 178 QLMGVLTMLNKEGLTIL 194
Cdd:cd03232 146 NIVRFLKKLADSGQAIL 162
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
23-194 |
1.19e-04 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 43.17 E-value: 1.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 23 NISISVKRGQLVAVIGNNGAGKSSMV-----RGATGLVRPSSGKVFFRGEDTTslsadrkVARGLVMVPEGRLLFPDQTV 97
Cdd:TIGR00956 781 NVDGWVKPGTLTALMGASGAGKTTLLnvlaeRVTTGVITGGDRLVNGRPLDSS-------FQRSIGYVQQQDLHLPTSTV 853
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 98 EDNLVLGAYLqggiKSPKSRSSLEK------VLALF--PRLKERLHQQAGSMSGGEQ-QMLAIARGLMAEPELLI-IDEL 167
Cdd:TIGR00956 854 RESLRFSAYL----RQPKSVSKSEKmeyveeVIKLLemESYADAVVGVPGEGLNVEQrKRLTIGVELVAKPKLLLfLDEP 929
|
170 180
....*....|....*....|....*..
gi 492878293 168 SLGLAPKIVDQLMGVLTMLNKEGLTIL 194
Cdd:TIGR00956 930 TSGLDSQTAWSICKLMRKLADHGQAIL 956
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
133-197 |
1.64e-04 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 42.69 E-value: 1.64e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 492878293 133 RLHQQAGSMSGGEQQMLAIARGLMAE---PELLIIDELSLGLAPKIVDQLMGVLTMLNKEGLTILLVE 197
Cdd:TIGR00630 822 RLGQPATTLSGGEAQRIKLAKELSKRstgRTLYILDEPTTGLHFDDIKKLLEVLQRLVDKGNTVVVIE 889
|
|
| AAA_21 |
pfam13304 |
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being ... |
54-195 |
1.74e-04 |
|
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system.
Pssm-ID: 433102 [Multi-domain] Cd Length: 303 Bit Score: 41.99 E-value: 1.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 54 LVRPSSGKVFFRGEDTTSLSADRKVARG---LVMVPEGRLLFPDQTVEDNLVLGAYLQGGIKSPKSRSSLEKVLALFPRL 130
Cdd:pfam13304 144 LLSIISPLSFLLLLDEGLLLEDWAVLDLaadLALFPDLKELLQRLVRGLKLADLNLSDLGEGIEKSLLVDDRLRERGLIL 223
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 492878293 131 KERLHQQ---AGSMSGGEQQMLAIA---RGLMAEPELLIIDELSLGLAPKIVDQLMGVLTMLNKEGLTILL 195
Cdd:pfam13304 224 LENGGGGelpAFELSDGTKRLLALLaalLSALPKGGLLLIDEPESGLHPKLLRRLLELLKELSRNGAQLIL 294
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
5-195 |
2.10e-04 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 41.92 E-value: 2.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 5 LLEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATG---------LV----RPSSGKVFFR-----G 66
Cdd:PRK10938 260 RIVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGdhpqgysndLTlfgrRRGSGETIWDikkhiG 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 67 EDTTSLSADRKVARGLVMVpegrLL--FPD-----QTVEDNLVLGA--YLqggikspkSRSSLEKVLALFPrlkerLHqq 137
Cdd:PRK10938 340 YVSSSLHLDYRVSTSVRNV----ILsgFFDsigiyQAVSDRQQKLAqqWL--------DILGIDKRTADAP-----FH-- 400
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 492878293 138 agSMSGGEQQMLAIARGLMAEPELLIIDELSLGLAP-------KIVDQLMGvltmlnkEGLTILL 195
Cdd:PRK10938 401 --SLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPlnrqlvrRFVDVLIS-------EGETQLL 456
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
140-171 |
3.71e-04 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 41.55 E-value: 3.71e-04
10 20 30
....*....|....*....|....*....|..
gi 492878293 140 SMSGGEQQMLAIARGLMAEPELLIIDELSLGL 171
Cdd:PTZ00265 1358 SLSGGQKQRIAIARALLREPKILLLDEATSSL 1389
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
11-166 |
5.95e-04 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 40.92 E-value: 5.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 11 LELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRG--------EDTTSLS--------- 73
Cdd:PRK10636 7 LQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGnwqlawvnQETPALPqpaleyvid 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 74 ADRKVaRGLvmvpEGRLLFPDQTVEDNLVlgAYLQG---GIKSPKSRSSLEKVLALFPRLKERLHQQAGSMSGGEQQMLA 150
Cdd:PRK10636 87 GDREY-RQL----EAQLHDANERNDGHAI--ATIHGkldAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLN 159
|
170
....*....|....*.
gi 492878293 151 IARGLMAEPELLIIDE 166
Cdd:PRK10636 160 LAQALICRSDLLLLDE 175
|
|
| PRK13543 |
PRK13543 |
heme ABC exporter ATP-binding protein CcmA; |
28-166 |
1.02e-03 |
|
heme ABC exporter ATP-binding protein CcmA;
Pssm-ID: 184129 [Multi-domain] Cd Length: 214 Bit Score: 39.06 E-value: 1.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 28 VKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSADRKVARgLVMVPEgrlLFPDQTVEDNLVLGAYL 107
Cdd:PRK13543 34 VDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAY-LGHLPG---LKADLSTLENLHFLCGL 109
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 492878293 108 QGgiKSPKSRSSLEKVLALFPRLKERLHQQagsMSGGEQQMLAIARGLMAEPELLIIDE 166
Cdd:PRK13543 110 HG--RRAKQMPGSALAIVGLAGYEDTLVRQ---LSAGQKKRLALARLWLSPAPLWLLDE 163
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
6-156 |
1.20e-03 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 40.15 E-value: 1.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 6 LEIKNLELRY--GTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFFRGEDTTSLSAdRKVARGLV 83
Cdd:PTZ00243 1309 LVFEGVQMRYreGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGL-RELRRQFS 1387
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 84 MVPEGRLLFpDQTVEDNLvlgaylqggikSPKSRSSLEKVLALFPR--LKERLH----------QQAGS-MSGGEQQMLA 150
Cdd:PTZ00243 1388 MIPQDPVLF-DGTVRQNV-----------DPFLEASSAEVWAALELvgLRERVAsesegidsrvLEGGSnYSVGQRQLMC 1455
|
....*.
gi 492878293 151 IARGLM 156
Cdd:PTZ00243 1456 MARALL 1461
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
6-166 |
1.73e-03 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 39.46 E-value: 1.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 6 LEIKNLELRYGTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVR-----GATGLvrPSSGKVF-----FRGEDTTSLSA- 74
Cdd:PLN03073 178 IHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRymamhAIDGI--PKNCQILhveqeVVGDDTTALQCv 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 75 -DRKVARGLVMVPEGRLLFPDQTVEDNLVLGAYlQGGIKSPKSRSSLEKVLA-LFPRLK--------------------- 131
Cdd:PLN03073 256 lNTDIERTQLLEEEAQLVAQQRELEFETETGKG-KGANKDGVDKDAVSQRLEeIYKRLElidaytaearaasilaglsft 334
|
170 180 190
....*....|....*....|....*....|....*.
gi 492878293 132 -ERLHQQAGSMSGGEQQMLAIARGLMAEPELLIIDE 166
Cdd:PLN03073 335 pEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDE 370
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
16-219 |
2.93e-03 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 38.69 E-value: 2.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 16 GTAVAVRNISISVKRGQLVAVIGNNGAGKSSMVRGATGLVRPSSGKVFfrgedttsLSADRKVArglvmvpegrlLFPDQ 95
Cdd:PLN03073 520 GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVF--------RSAKVRMA-----------VFSQH 580
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492878293 96 TVeDNLVLGA----YLQ---GGIKSPKSRSSLEKV-----LALfprlkerlhQQAGSMSGGEQQMLAIARGLMAEPELLI 163
Cdd:PLN03073 581 HV-DGLDLSSnpllYMMrcfPGVPEQKLRAHLGSFgvtgnLAL---------QPMYTLSGGQKSRVAFAKITFKKPHILL 650
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 492878293 164 IDELSLGLAPKIVDQLMGVLTMLNKEGLTILLVEQLASYALaiaDYGFVVANGKIA 219
Cdd:PLN03073 651 LDEPSNHLDLDAVEALIQGLVLFQGGVLMVSHDEHLISGSV---DELWVVSEGKVT 703
|
|
| |
