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Conserved domains on  [gi|492798955|ref|WP_005967523|]
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MULTISPECIES: hypothetical protein [Fusobacterium]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF1043 super family cl11473
Protein of unknown function (DUF1043); This family consists of several hypothetical bacterial ...
 22-91 4.36e-07

Protein of unknown function (DUF1043); This family consists of several hypothetical bacterial proteins of unknown function.


The actual alignment was detected with superfamily member pfam06295:

Pssm-ID: 472195  Cd Length: 119  Bit Score: 44.60  E-value: 4.36e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 492798955   22 GVILGYhnYLMRQINKRLKKetyyidQEKLDKQLEEIKNSSEKQKDEIK---AMIAKLGDKMESDYQKIYDHL 91
Cdd:pfam06295   4 GLIIGA--LIMRLGNSNLKK------QKKLEKELEKAKAELEQYRQELEdhfARSAELLENLANDYQKLYQHL 68
 
Name Accession Description Interval E-value
DUF1043 pfam06295
Protein of unknown function (DUF1043); This family consists of several hypothetical bacterial ...
 22-91 4.36e-07

Protein of unknown function (DUF1043); This family consists of several hypothetical bacterial proteins of unknown function.


Pssm-ID: 428874  Cd Length: 119  Bit Score: 44.60  E-value: 4.36e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 492798955   22 GVILGYhnYLMRQINKRLKKetyyidQEKLDKQLEEIKNSSEKQKDEIK---AMIAKLGDKMESDYQKIYDHL 91
Cdd:pfam06295   4 GLIIGA--LIMRLGNSNLKK------QKKLEKELEKAKAELEQYRQELEdhfARSAELLENLANDYQKLYQHL 68
YhcB COG3105
Uncharacterized membrane-anchored protein YhcB, DUF1043 family [Function unknown];
20-91 5.15e-05

Uncharacterized membrane-anchored protein YhcB, DUF1043 family [Function unknown];


Pssm-ID: 442339  Cd Length: 139  Bit Score: 39.14  E-value: 5.15e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 492798955  20 VGGVILGYhnYLMRQINKRLKKetyyidQEKLDKQLEEIKNSSEKQKDEIK---AMIAKLGDKMESDYQKIYDHL 91
Cdd:COG3105   14 VVGIIIGF--LLMRLLNRKVRQ------QQKLEQELDEAKAELEQYRQEVNehfARTAELLDNLAQDYRKLYQHL 80
PRK11677 PRK11677
DUF1043 family protein;
18-91 9.99e-05

DUF1043 family protein;


Pssm-ID: 236953  Cd Length: 134  Bit Score: 38.50  E-value: 9.99e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 492798955  18 ITVGGVIlgyhnylMRQINKRLKKetyyidQEKLDKQLEEIKNSSEKQKDEIK---AMIAKLGDKMESDYQKIYDHL 91
Cdd:PRK11677  14 IIIGAVA-------MRFGNRKLRQ------QQALQYELEKNKAELEEYRQELVshfARSAELLDTMAKDYRQLYQHM 77
 
Name Accession Description Interval E-value
DUF1043 pfam06295
Protein of unknown function (DUF1043); This family consists of several hypothetical bacterial ...
 22-91 4.36e-07

Protein of unknown function (DUF1043); This family consists of several hypothetical bacterial proteins of unknown function.


Pssm-ID: 428874  Cd Length: 119  Bit Score: 44.60  E-value: 4.36e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 492798955   22 GVILGYhnYLMRQINKRLKKetyyidQEKLDKQLEEIKNSSEKQKDEIK---AMIAKLGDKMESDYQKIYDHL 91
Cdd:pfam06295   4 GLIIGA--LIMRLGNSNLKK------QKKLEKELEKAKAELEQYRQELEdhfARSAELLENLANDYQKLYQHL 68
YhcB COG3105
Uncharacterized membrane-anchored protein YhcB, DUF1043 family [Function unknown];
20-91 5.15e-05

Uncharacterized membrane-anchored protein YhcB, DUF1043 family [Function unknown];


Pssm-ID: 442339  Cd Length: 139  Bit Score: 39.14  E-value: 5.15e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 492798955  20 VGGVILGYhnYLMRQINKRLKKetyyidQEKLDKQLEEIKNSSEKQKDEIK---AMIAKLGDKMESDYQKIYDHL 91
Cdd:COG3105   14 VVGIIIGF--LLMRLLNRKVRQ------QQKLEQELDEAKAELEQYRQEVNehfARTAELLDNLAQDYRKLYQHL 80
PRK11677 PRK11677
DUF1043 family protein;
18-91 9.99e-05

DUF1043 family protein;


Pssm-ID: 236953  Cd Length: 134  Bit Score: 38.50  E-value: 9.99e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 492798955  18 ITVGGVIlgyhnylMRQINKRLKKetyyidQEKLDKQLEEIKNSSEKQKDEIK---AMIAKLGDKMESDYQKIYDHL 91
Cdd:PRK11677  14 IIIGAVA-------MRFGNRKLRQ------QQALQYELEKNKAELEEYRQELVshfARSAELLDTMAKDYRQLYQHM 77
PilN COG3166
Type IV pilus assembly protein PilN [Cell motility, Extracellular structures];
9-76 1.16e-04

Type IV pilus assembly protein PilN [Cell motility, Extracellular structures];


Pssm-ID: 442399 [Multi-domain]  Cd Length: 185  Bit Score: 38.79  E-value: 1.16e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492798955   9 LLGMLGTSLITVGGVILGYHNYLMRQINkRLKKETYYIDQE--KLDKQLEEIKNsSEKQKDEIKAMIAKL 76
Cdd:COG3166   21 FLALLVLALLLALAVLFLVYLYLQGQIA-QQQARNAALQQEiaKLDKQIAEIKE-LKKQKAELLARLQVI 88
PRK00409 PRK00409
recombination and DNA strand exchange inhibitor protein; Reviewed
 35-87 8.77e-03

recombination and DNA strand exchange inhibitor protein; Reviewed


Pssm-ID: 234750 [Multi-domain]  Cd Length: 782  Bit Score: 34.03  E-value: 8.77e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 492798955  35 INKRLKKETYYIDQEKLDKQLEEIKNSSEKQKDEIKAMIAKLGDKMESDYQKI 87
Cdd:PRK00409 526 EELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQA 578
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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