MULTISPECIES: ParB/RepB/Spo0J family partition protein [Bacteroidales]
IbrB-like domain-containing protein( domain architecture ID 11611634)
IbrB-like domain-containing protein, a member of the ParB/Srx superfamily; similar to Escherichia coli IbrB which along with IbrA activates immunoglobulin-binding eib genes
List of domain hits
Name | Accession | Description | Interval | E-value | |||
IbrB_like | cd16397 | immunoglobulin-binding regulator IbrB activates eib genes; IbrB (along with IbrA) activates ... |
8-108 | 2.26e-56 | |||
immunoglobulin-binding regulator IbrB activates eib genes; IbrB (along with IbrA) activates immunoglobulin-binding eib genes in Escherichia coli. IbrB is related to the ParB N-terminal domain family, which includes DNA-binding proteins involved in chromosomal/plasmid segregation and transcriptional regulation, consistent with a possible mechanism for IbrB in DNA binding-related regulation of eib expression. The ParB like family is a diverse domain superfamily with structural and sequence similarity to ParB of bacterial chromosomes/plasmid parABS partitioning system and Sulfiredoxin (Srx), which is a reactivator of oxidatively inactivated 2-cys peroxiredoxins. Other families includes proteins related to StrR, a putative regulator in the biosynthetic gene cluster and a family containing a Pyrococcus furiosus nuclease and putative transcriptional regulators SbnI (Staphylococcus aureus siderophore biosynthetic gene cluster ) and EdeB (Brevibacillus brevis antimicrobial peptide edeine biosynthetic cluster). Nuclease activity has also been reported in arabidopsis Srx. : Pssm-ID: 319255 [Multi-domain] Cd Length: 100 Bit Score: 171.99 E-value: 2.26e-56
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Name | Accession | Description | Interval | E-value | ||||
IbrB_like | cd16397 | immunoglobulin-binding regulator IbrB activates eib genes; IbrB (along with IbrA) activates ... |
8-108 | 2.26e-56 | ||||
immunoglobulin-binding regulator IbrB activates eib genes; IbrB (along with IbrA) activates immunoglobulin-binding eib genes in Escherichia coli. IbrB is related to the ParB N-terminal domain family, which includes DNA-binding proteins involved in chromosomal/plasmid segregation and transcriptional regulation, consistent with a possible mechanism for IbrB in DNA binding-related regulation of eib expression. The ParB like family is a diverse domain superfamily with structural and sequence similarity to ParB of bacterial chromosomes/plasmid parABS partitioning system and Sulfiredoxin (Srx), which is a reactivator of oxidatively inactivated 2-cys peroxiredoxins. Other families includes proteins related to StrR, a putative regulator in the biosynthetic gene cluster and a family containing a Pyrococcus furiosus nuclease and putative transcriptional regulators SbnI (Staphylococcus aureus siderophore biosynthetic gene cluster ) and EdeB (Brevibacillus brevis antimicrobial peptide edeine biosynthetic cluster). Nuclease activity has also been reported in arabidopsis Srx. Pssm-ID: 319255 [Multi-domain] Cd Length: 100 Bit Score: 171.99 E-value: 2.26e-56
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Spo0J | COG1475 | Chromosome segregation protein Spo0J, contains ParB-like nuclease domain [Cell cycle control, ... |
12-165 | 1.52e-07 | ||||
Chromosome segregation protein Spo0J, contains ParB-like nuclease domain [Cell cycle control, cell division, chromosome partitioning]; Pssm-ID: 441084 [Multi-domain] Cd Length: 241 Bit Score: 49.22 E-value: 1.52e-07
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ParB | smart00470 | ParB-like nuclease domain; Plasmid RK2 ParB preferentially cleaves single-stranded DNA. ParB ... |
15-109 | 3.94e-07 | ||||
ParB-like nuclease domain; Plasmid RK2 ParB preferentially cleaves single-stranded DNA. ParB also nicks supercoiled plasmid DNA preferably at sites with potential single-stranded character, like AT-rich regions and sequences that can form cruciform structures. ParB also exhibits 5-->3 exonuclease activity. Pssm-ID: 214678 [Multi-domain] Cd Length: 89 Bit Score: 45.76 E-value: 3.94e-07
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ParBc | pfam02195 | ParB/Sulfiredoxin domain; Proteins containing this domain include Escherichia coli plasmid ... |
15-109 | 5.20e-07 | ||||
ParB/Sulfiredoxin domain; Proteins containing this domain include Escherichia coli plasmid protein ParB and mammalian Sulfiredoxin-1. ParB is involved in chromosome partition. It localizes to both poles of the predivisional cell following completion of DNA replication. Sulfiredoxin-1 contributes to oxidative stress resistance by reducing cysteine-sulfinic acid formed under exposure to oxidants in the peroxiredoxins PRDX1, PRDX2, PRDX3 and PRDX4. Pssm-ID: 426651 [Multi-domain] Cd Length: 90 Bit Score: 45.35 E-value: 5.20e-07
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Name | Accession | Description | Interval | E-value | ||||
IbrB_like | cd16397 | immunoglobulin-binding regulator IbrB activates eib genes; IbrB (along with IbrA) activates ... |
8-108 | 2.26e-56 | ||||
immunoglobulin-binding regulator IbrB activates eib genes; IbrB (along with IbrA) activates immunoglobulin-binding eib genes in Escherichia coli. IbrB is related to the ParB N-terminal domain family, which includes DNA-binding proteins involved in chromosomal/plasmid segregation and transcriptional regulation, consistent with a possible mechanism for IbrB in DNA binding-related regulation of eib expression. The ParB like family is a diverse domain superfamily with structural and sequence similarity to ParB of bacterial chromosomes/plasmid parABS partitioning system and Sulfiredoxin (Srx), which is a reactivator of oxidatively inactivated 2-cys peroxiredoxins. Other families includes proteins related to StrR, a putative regulator in the biosynthetic gene cluster and a family containing a Pyrococcus furiosus nuclease and putative transcriptional regulators SbnI (Staphylococcus aureus siderophore biosynthetic gene cluster ) and EdeB (Brevibacillus brevis antimicrobial peptide edeine biosynthetic cluster). Nuclease activity has also been reported in arabidopsis Srx. Pssm-ID: 319255 [Multi-domain] Cd Length: 100 Bit Score: 171.99 E-value: 2.26e-56
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Spo0J | COG1475 | Chromosome segregation protein Spo0J, contains ParB-like nuclease domain [Cell cycle control, ... |
12-165 | 1.52e-07 | ||||
Chromosome segregation protein Spo0J, contains ParB-like nuclease domain [Cell cycle control, cell division, chromosome partitioning]; Pssm-ID: 441084 [Multi-domain] Cd Length: 241 Bit Score: 49.22 E-value: 1.52e-07
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ParB | smart00470 | ParB-like nuclease domain; Plasmid RK2 ParB preferentially cleaves single-stranded DNA. ParB ... |
15-109 | 3.94e-07 | ||||
ParB-like nuclease domain; Plasmid RK2 ParB preferentially cleaves single-stranded DNA. ParB also nicks supercoiled plasmid DNA preferably at sites with potential single-stranded character, like AT-rich regions and sequences that can form cruciform structures. ParB also exhibits 5-->3 exonuclease activity. Pssm-ID: 214678 [Multi-domain] Cd Length: 89 Bit Score: 45.76 E-value: 3.94e-07
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ParBc | pfam02195 | ParB/Sulfiredoxin domain; Proteins containing this domain include Escherichia coli plasmid ... |
15-109 | 5.20e-07 | ||||
ParB/Sulfiredoxin domain; Proteins containing this domain include Escherichia coli plasmid protein ParB and mammalian Sulfiredoxin-1. ParB is involved in chromosome partition. It localizes to both poles of the predivisional cell following completion of DNA replication. Sulfiredoxin-1 contributes to oxidative stress resistance by reducing cysteine-sulfinic acid formed under exposure to oxidants in the peroxiredoxins PRDX1, PRDX2, PRDX3 and PRDX4. Pssm-ID: 426651 [Multi-domain] Cd Length: 90 Bit Score: 45.35 E-value: 5.20e-07
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Blast search parameters | ||||
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