|
Name |
Accession |
Description |
Interval |
E-value |
| SecA |
COG0653 |
Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, ... |
2-893 |
0e+00 |
|
Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440418 [Multi-domain] Cd Length: 876 Bit Score: 1652.84 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 2 FRSILTKIFGSRNDRILRRLNKIVIKINQLEPEFEALSDDDLKAKTDAFKARLAQGETLEQLLPEAFATVREASKRVLGM 81
Cdd:COG0653 1 MGKLLKKIFGSRNDRELKRLRKIVDKINALEPEMEALSDEELRAKTDEFKERLANGETLDDLLPEAFAVVREASKRVLGM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 82 RHFDVQLLGGMVLTNRCIAEMRTGEGKTLTATLPCYLNALTGKGVHVVTVNDYLARRDAETNRPLFEFLGMTVGVNVPGL 161
Cdd:COG0653 81 RHFDVQLIGGIVLHQGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGRLYRFLGLSVGVIVHGM 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 162 SPEQKREAYAADVTYATNSELGFDYLRDNLAHTAQERFQRYLHYALVDEVDSILIDEARTPLIISGQAEDSSELYMTVDK 241
Cdd:COG0653 161 DPEERRAAYAADITYGTNNEFGFDYLRDNMVFSLEDMVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDSTDLYYRINK 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 242 LIPNLIKqdkedseeyqgEGDFTLDLKTKQAHLTERGQEKVEQWLteqGLmsaeESLYSPSKISLLHHVYAALRAHTLFE 321
Cdd:COG0653 241 LVPRLKR-----------DGDYTVDEKARTVTLTEEGIEKVEKLL---GI----DNLYDPENIELVHHLNQALRAHALFK 302
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 322 RDVDYIVKDGEIVIVDEHTGRTMAGRRWSDGLHQAIEAKEGVRIQSENQTVASITYQNYFRLYEKLAGMTGTADTEAFEF 401
Cdd:COG0653 303 RDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEF 382
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 402 QQIYGLETIVVPTNRPMIRDDRTDVMFENEEYKFNAIIEDIKDCVARNQPVLVGTISIEKSELLSHALKKAGIKHNVLNA 481
Cdd:COG0653 383 REIYGLDVVVIPTNRPMIRKDEPDLVYKTEEEKFNAVVEDIKERHEKGQPVLVGTTSIEKSELLSKLLKKEGIPHNVLNA 462
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 482 KFHAQEAEIVANAGYPGTVTIATNMAGRGTDIVLGGNW----KAEIAKLDNPTEAQIEAIHTAWKARHEIVKAAGGLHII 557
Cdd:COG0653 463 KQHEREAEIVAQAGRPGAVTIATNMAGRGTDIVLGGNPeflaAAELADRGLEWEEAIAKIKAEWQAEHEEVLEAGGLHVI 542
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 558 GTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDDALMRIYLNEGKLNLMRKAFSTAGEAMESKMLTKVIASAQAKVEAH 637
Cdd:COG0653 543 GTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLMRIFGSDRIKGMMDKLGMEEGEPIEHKMVSKAIENAQKKVEGR 622
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 638 NFDGRKNLLEFDDVANDQRHAIYAQRNTLLDNEDISDTIDVIRADVFNQVIDQYIPPQSLEEMWDVPALEQRLKHDFALD 717
Cdd:COG0653 623 NFDIRKNLLEYDDVMNDQRKVIYEQRREILEGEDLSETILDMREDVIEDLVDEYIPEGSYPEQWDLEGLEEALKELFGLD 702
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 718 LPLEKWLEEDNhFDEDALRQRVLDAAIEEYKQKESIVGEQTMRSFEKGVMLQTLDELWKEHLSAMDHLRRGIHLRGYAQK 797
Cdd:COG0653 703 LPIEEWLDEEG-LDEEELRERLLEAADEAYEEKEEELGPEVMRELERVVLLQVLDRKWREHLDAMDHLRQGIGLRGYAQK 781
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 798 DPKQEYKKECFQMFTDMLDALKLSVVTTLSRVQVRTQEEVEQAERQRQEmAKRETASMQYNADEDSGEENTRRVGRNEPC 877
Cdd:COG0653 782 DPLVEYKREAFELFEEMLDSIKEEVVRYLFRVQVRSEEEREEVEEERRE-NHADPAGEEEEEAPKQPVRKGPKVGRNDPC 860
|
890
....*....|....*.
gi 492122012 878 PCGSGKKYKHCHGSKA 893
Cdd:COG0653 861 PCGSGKKYKHCHGKLA 876
|
|
| PRK12904 |
PRK12904 |
preprotein translocase subunit SecA; Reviewed |
2-893 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237259 [Multi-domain] Cd Length: 830 Bit Score: 1620.16 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 2 FRSILTKIFGSRNDRILRRLNKIVIKINQLEPEFEALSDDDLKAKTDAFKARLAQGETLEQLLPEAFATVREASKRVLGM 81
Cdd:PRK12904 1 MLGLLKKIFGSRNDRELKRLRKIVDKINALEPEMEKLSDEELKAKTAEFKERLAKGETLDDLLPEAFAVVREASKRVLGM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 82 RHFDVQLLGGMVLTNRCIAEMRTGEGKTLTATLPCYLNALTGKGVHVVTVNDYLARRDAETNRPLFEFLGMTVGVNVPGL 161
Cdd:PRK12904 81 RHFDVQLIGGMVLHEGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGVILSGM 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 162 SPEQKREAYAADVTYATNSELGFDYLRDNLAHTAQERFQRYLHYALVDEVDSILIDEARTPLIISGQAEDSSELYMTVDK 241
Cdd:PRK12904 161 SPEERREAYAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDSSELYKRANK 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 242 LIPNLikqdkedseeyQGEGDFTLDLKTKQAHLTERGQEKVEQWLTeqglmsaEESLYSPSKISLLHHVYAALRAHTLFE 321
Cdd:PRK12904 241 IVPTL-----------EKEGDYTVDEKSRTVGLTEEGIEKAEKLLG-------IENLYDPENIALVHHLNQALRAHELFK 302
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 322 RDVDYIVKDGEIVIVDEHTGRTMAGRRWSDGLHQAIEAKEGVRIQSENQTVASITYQNYFRLYEKLAGMTGTADTEAFEF 401
Cdd:PRK12904 303 RDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEF 382
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 402 QQIYGLETIVVPTNRPMIRDDRTDVMFENEEYKFNAIIEDIKDCVARNQPVLVGTISIEKSELLSHALKKAGIKHNVLNA 481
Cdd:PRK12904 383 REIYNLDVVVIPTNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNA 462
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 482 KFHAQEAEIVANAGYPGTVTIATNMAGRGTDIVLGGNWKAEIAK-LDNPTEAQIEAIHTAWKARHEIVKAAGGLHIIGTE 560
Cdd:PRK12904 463 KNHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAAlLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTE 542
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 561 RHESRRIDNQLRGRSGRQGDPGSSRFYLSLDDALMRIYLNEGKLNLMRKAFSTAGEAMESKMLTKVIASAQAKVEAHNFD 640
Cdd:PRK12904 543 RHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLMRIFGSDRVKGMMDRLGMKEGEAIEHKMVTRAIENAQKKVEGRNFD 622
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 641 GRKNLLEFDDVANDQRHAIYAQRNTLLDNEDISDTIDVIRADVFNQVIDQYIPPQSLEEMWDVPALEQRLKHDFALDLPL 720
Cdd:PRK12904 623 IRKQLLEYDDVMNDQRKVIYAQRNEILEGEDLSETILDMREDVIEDLVDAYIPPGSYEEDWDLEGLEEALKTDFGLELPI 702
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 721 EKWLEEDnhFDEDALRQRVLDAAIEEYKQKESIVGEQTMRSFEKGVMLQTLDELWKEHLSAMDHLRRGIHLRGYAQKDPK 800
Cdd:PRK12904 703 EEWLEEG--LDEEELRERILEAAEEAYEEKEEELGEEQMREFERVVMLQVLDTKWREHLAAMDHLRQGIGLRGYAQKDPL 780
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 801 QEYKKECFQMFTDMLDALKLSVVTTLSRVQVrtqeeveqaerqrqemakretasmqynadedsgeentrrvgrnEPCPCG 880
Cdd:PRK12904 781 QEYKREGFELFEEMLDSIKEEVVRTLMKVQI-------------------------------------------DPCPCG 817
|
890
....*....|...
gi 492122012 881 SGKKYKHCHGSKA 893
Cdd:PRK12904 818 SGKKYKHCHGRLA 830
|
|
| secA |
TIGR00963 |
preprotein translocase, SecA subunit; The proteins SecA-F and SecY, not all of which are ... |
28-818 |
0e+00 |
|
preprotein translocase, SecA subunit; The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus. This model excludes SecA2 of the accessory secretory system. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273366 [Multi-domain] Cd Length: 742 Bit Score: 1130.43 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 28 INQLEPEFEALSDDDLKAKTDAFKARLA-QGETLEQLLPEAFATVREASKRVLGMRHFDVQLLGGMVLTNRCIAEMRTGE 106
Cdd:TIGR00963 1 INALEEDYEKLSDEELRNKTNEFKDRLAkQGETLDDLLPEAFAVVREASKRVLGMRPFDVQLIGGIALHKGKIAEMKTGE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 107 GKTLTATLPCYLNALTGKGVHVVTVNDYLARRDAETNRPLFEFLGMTVGVNVPGLSPEQKREAYAADVTYATNSELGFDY 186
Cdd:TIGR00963 81 GKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLILSGMSPEERREAYACDITYGTNNELGFDY 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 187 LRDNLAHTAQERFQRYLHYALVDEVDSILIDEARTPLIISGQAEDSSELYMtvdklipnlikQDKEDSEEYQGEGDFTLD 266
Cdd:TIGR00963 161 LRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPAEKSTELYV-----------QANKFAKALEKEVDYEVD 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 267 LKTKQAHLTERGQEKVEQWLTEqglmsaeESLYSPSKISLLHHVYAALRAHTLFERDVDYIVKDGEIVIVDEHTGRTMAG 346
Cdd:TIGR00963 230 EKNRAVLLTEQGMKKAEDLLGV-------DNLYDLENSPLIHYINNALKAKELFQKDVDYIVRDGEVVIVDEFTGRIMEG 302
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 347 RRWSDGLHQAIEAKEGVRIQSENQTVASITYQNYFRLYEKLAGMTGTADTEAFEFQQIYGLETIVVPTNRPMIRDDRTDV 426
Cdd:TIGR00963 303 RRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFRKIYNLEVVVVPTNRPVIRKDRPDL 382
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 427 MFENEEYKFNAIIEDIKDCVARNQPVLVGTISIEKSELLSHALKKAGIKHNVLNAKFHAQEAEIVANAGYPGTVTIATNM 506
Cdd:TIGR00963 383 VYKTEEEKWKAVVEEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAKNHEREAEIIAQAGRKGAVTIATNM 462
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 507 AGRGTDIVLggnwkaeiakldnpteaqieaihtawkarhEIVKAAGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRF 586
Cdd:TIGR00963 463 AGRGTDIKL------------------------------EEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRF 512
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 587 YLSLDDALMRIYLNEGKLNLMRKAFSTAGEAMESKMLTKVIASAQAKVEAHNFDGRKNLLEFDDVANDQRHAIYAQRNTL 666
Cdd:TIGR00963 513 FLSLEDNLMRIFGGDRLEGLMRRLGMDDDEPIESKMVSRALESAQKRVEGRNFDIRKQLLEYDDVLNKQREVIYAERRRV 592
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 667 LDNEDISDTIDVIRADVFNQVIDQYIPPQSLEEMWDVPALEQRLKHDFALDLPLEkwLEEDNHFDEDALRQRVLDAAIEE 746
Cdd:TIGR00963 593 LESEDLSELILQMLESTLDRIVDAYINEEKLSEEWDLEGLIEKLKTLFLLDGDLT--PEDLENLTSEDLKELLLEKIRAA 670
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 492122012 747 YKQKESIVGEQTMRSFEKGVMLQTLDELWKEHLSAMDHLRRGIHLRGYAQKDPKQEYKKECFQMFTDMLDAL 818
Cdd:TIGR00963 671 YDEKEEQLESERMREFERYVLLQSIDRKWKEHLDAMDLLREGIGLRSYGQKDPLIEYKNEGFNLFEEMLEDI 742
|
|
| SecA_DEAD |
smart00957 |
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with ... |
6-402 |
0e+00 |
|
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the.
Pssm-ID: 214937 [Multi-domain] Cd Length: 380 Bit Score: 751.18 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 6 LTKIFGSRNDRILRRLNKIVIKINQLEPEFEALSDDDLKAKTDAFKARLAQGETLEQLLPEAFATVREASKRVLGMRHFD 85
Cdd:smart00957 1 LKKLFGSKNDRELKRLRKIVDQINALEPEMEALSDEELRAKTAEFKERLAEGESLDDLLPEAFAVVREAAKRVLGMRHFD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 86 VQLLGGMVLTNRCIAEMRTGEGKTLTATLPCYLNALTGKGVHVVTVNDYLARRDAETNRPLFEFLGMTVGVNVPGLSPEQ 165
Cdd:smart00957 81 VQLIGGIVLHEGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLTVGVIVSGMSPEE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 166 KREAYAADVTYATNSELGFDYLRDNLAHTAQERFQRYLHYALVDEVDSILIDEARTPLIISGQAED-SSELYMTVDKLIP 244
Cdd:smart00957 161 RRAAYAADITYGTNNEFGFDYLRDNMAFSKEDKVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDeSSDLYHRADKFVP 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 245 NLIKQDkedseeyqgegDFTLDLKTKQAHLTERGQEKVEQWLTeqglmsaEESLYSPSKISLLHHVYAALRAHTLFERDV 324
Cdd:smart00957 241 RLKEDE-----------DYTVDEKSRTVELTEEGIEKAEKLLG-------IDNLYDPENIELLHHVNQALRAHYLFKRDV 302
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 492122012 325 DYIVKDGEIVIVDEHTGRTMAGRRWSDGLHQAIEAKEGVRIQSENQTVASITYQNYFRLYEKLAGMTGTADTEAFEFQ 402
Cdd:smart00957 303 DYIVRDGEVVIVDEFTGRVMEGRRYSDGLHQAIEAKEGVEIQEENQTLATITFQNYFRMYKKLSGMTGTAKTEAEEFR 380
|
|
| SecA_DEAD |
pfam07517 |
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with ... |
6-401 |
0e+00 |
|
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the pfam00270.
Pssm-ID: 462190 [Multi-domain] Cd Length: 379 Bit Score: 692.70 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 6 LTKIFGSRNDRILRRLNKIVIKINQLEPEFEALSDDDLKAKTDAFKARLAQGETLEQLLPEAFATVREASKRVLGMRHFD 85
Cdd:pfam07517 1 LKKIFGSPNERDLKRLRKIVDQINALEEELKALSDEELRAKTDELRERLREGESLDDILPEAFALVREAAKRVLGMRHYD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 86 VQLLGGMVLTNRCIAEMRTGEGKTLTATLPCYLNALTGKGVHVVTVNDYLARRDAETNRPLFEFLGMTVGVNVPGLSPEQ 165
Cdd:pfam07517 81 VQLIGGLVLHEGKIAEMKTGEGKTLTATLPAYLNALSGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLTVGVITSDMDPEE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 166 KREAYAADVTYATNSELGFDYLRDNLAHTAQERFQRYLHYALVDEVDSILIDEARTPLIISGQAEDSSELYMTVDKLIPN 245
Cdd:pfam07517 161 RRAAYNADITYGTNNELGFDYLRDNMATSKEDKVQRGLNFAIVDEVDSILIDEARTPLIISGPSEDDSELYREADRLVKS 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 246 LikqdkedseeyQGEGDFTLDLKTKQAHLTERGQEKVEQWLteqglmsAEESLYSPSKISLLHHVYAALRAHTLFERDVD 325
Cdd:pfam07517 241 L-----------EEDGDYEIDEKSKNVELTEKGIEKIEKLL-------GIDNLYDPENVELLHHINQALKAHHLFKRDVD 302
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 492122012 326 YIVKDGEIVIVDEHTGRTMAGRRWSDGLHQAIEAKEGVRIQSENQTVASITYQNYFRLYEKLAGMTGTADTEAFEF 401
Cdd:pfam07517 303 YIVRDGEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEITPESQTLASITYQNFFRLYPKLSGMTGTAKTEAEEF 378
|
|
| DEXDc_SecA |
cd17928 |
DEXD-box helicase domain of SecA; SecA is a part of the Sec translocase that transports the ... |
42-414 |
1.86e-130 |
|
DEXD-box helicase domain of SecA; SecA is a part of the Sec translocase that transports the vast majority of bacterial and ER-exported proteins. SecA binds both the signal sequence and the mature domain of the preprotein emerging from the ribosome. SecA belongs to the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350686 [Multi-domain] Cd Length: 230 Bit Score: 390.36 E-value: 1.86e-130
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 42 DLKAKTDAFKARLAQGETLEQLLPEAFATVREASKRVLGMRHFDVQLLGGMVLTNRCIAEMRTGEGKTLTATLPCYLNAL 121
Cdd:cd17928 1 ELRAKTDELRERLAKGETLDDLLPEAFALVREAARRVLGMRPFDVQLIGGLVLHEGKIAEMKTGEGKTLTATLPAYLNAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 122 TGKGVHVVTVNDYLARRDAETNRPLFEFLGMTVGVNVPGLSPEQKREAYAADVTYATNSELGFDYLRDNLAHTAQERFQR 201
Cdd:cd17928 81 TGKGVHVVTVNDYLARRDAEWMGPLYEFLGLTVGVILSDMSPDERREAYAADITYGTNNELGFDYLRDNMVTSKEDLVQR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 202 YLHYALVDEVDSILIDEARTPLIISGqaedsselymtvdklipnlikqdkedseeyqgegdftldlktkqahltergqek 281
Cdd:cd17928 161 GLNFAIVDEVDSILIDEARTPLIISG------------------------------------------------------ 186
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 282 veqwlteqglmsaeeslyspskisllhhvyaalrahtlferdvdyivkdgeivivdehtgrtmagrrwsdglhqaieake 361
Cdd:cd17928 --------------------------------------------------------------------------------
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 492122012 362 gvriqsenqTVASITYQNYFRLYEKLAGMTGTADTEAFEFQQIYGLETIVVPT 414
Cdd:cd17928 187 ---------TLATITFQNYFRLYPKLAGMTGTAKTEAEEFREIYNLDVVVIPT 230
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| SecA |
COG0653 |
Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, ... |
2-893 |
0e+00 |
|
Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440418 [Multi-domain] Cd Length: 876 Bit Score: 1652.84 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 2 FRSILTKIFGSRNDRILRRLNKIVIKINQLEPEFEALSDDDLKAKTDAFKARLAQGETLEQLLPEAFATVREASKRVLGM 81
Cdd:COG0653 1 MGKLLKKIFGSRNDRELKRLRKIVDKINALEPEMEALSDEELRAKTDEFKERLANGETLDDLLPEAFAVVREASKRVLGM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 82 RHFDVQLLGGMVLTNRCIAEMRTGEGKTLTATLPCYLNALTGKGVHVVTVNDYLARRDAETNRPLFEFLGMTVGVNVPGL 161
Cdd:COG0653 81 RHFDVQLIGGIVLHQGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGRLYRFLGLSVGVIVHGM 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 162 SPEQKREAYAADVTYATNSELGFDYLRDNLAHTAQERFQRYLHYALVDEVDSILIDEARTPLIISGQAEDSSELYMTVDK 241
Cdd:COG0653 161 DPEERRAAYAADITYGTNNEFGFDYLRDNMVFSLEDMVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDSTDLYYRINK 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 242 LIPNLIKqdkedseeyqgEGDFTLDLKTKQAHLTERGQEKVEQWLteqGLmsaeESLYSPSKISLLHHVYAALRAHTLFE 321
Cdd:COG0653 241 LVPRLKR-----------DGDYTVDEKARTVTLTEEGIEKVEKLL---GI----DNLYDPENIELVHHLNQALRAHALFK 302
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 322 RDVDYIVKDGEIVIVDEHTGRTMAGRRWSDGLHQAIEAKEGVRIQSENQTVASITYQNYFRLYEKLAGMTGTADTEAFEF 401
Cdd:COG0653 303 RDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEF 382
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 402 QQIYGLETIVVPTNRPMIRDDRTDVMFENEEYKFNAIIEDIKDCVARNQPVLVGTISIEKSELLSHALKKAGIKHNVLNA 481
Cdd:COG0653 383 REIYGLDVVVIPTNRPMIRKDEPDLVYKTEEEKFNAVVEDIKERHEKGQPVLVGTTSIEKSELLSKLLKKEGIPHNVLNA 462
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 482 KFHAQEAEIVANAGYPGTVTIATNMAGRGTDIVLGGNW----KAEIAKLDNPTEAQIEAIHTAWKARHEIVKAAGGLHII 557
Cdd:COG0653 463 KQHEREAEIVAQAGRPGAVTIATNMAGRGTDIVLGGNPeflaAAELADRGLEWEEAIAKIKAEWQAEHEEVLEAGGLHVI 542
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 558 GTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDDALMRIYLNEGKLNLMRKAFSTAGEAMESKMLTKVIASAQAKVEAH 637
Cdd:COG0653 543 GTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLMRIFGSDRIKGMMDKLGMEEGEPIEHKMVSKAIENAQKKVEGR 622
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 638 NFDGRKNLLEFDDVANDQRHAIYAQRNTLLDNEDISDTIDVIRADVFNQVIDQYIPPQSLEEMWDVPALEQRLKHDFALD 717
Cdd:COG0653 623 NFDIRKNLLEYDDVMNDQRKVIYEQRREILEGEDLSETILDMREDVIEDLVDEYIPEGSYPEQWDLEGLEEALKELFGLD 702
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 718 LPLEKWLEEDNhFDEDALRQRVLDAAIEEYKQKESIVGEQTMRSFEKGVMLQTLDELWKEHLSAMDHLRRGIHLRGYAQK 797
Cdd:COG0653 703 LPIEEWLDEEG-LDEEELRERLLEAADEAYEEKEEELGPEVMRELERVVLLQVLDRKWREHLDAMDHLRQGIGLRGYAQK 781
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 798 DPKQEYKKECFQMFTDMLDALKLSVVTTLSRVQVRTQEEVEQAERQRQEmAKRETASMQYNADEDSGEENTRRVGRNEPC 877
Cdd:COG0653 782 DPLVEYKREAFELFEEMLDSIKEEVVRYLFRVQVRSEEEREEVEEERRE-NHADPAGEEEEEAPKQPVRKGPKVGRNDPC 860
|
890
....*....|....*.
gi 492122012 878 PCGSGKKYKHCHGSKA 893
Cdd:COG0653 861 PCGSGKKYKHCHGKLA 876
|
|
| PRK12904 |
PRK12904 |
preprotein translocase subunit SecA; Reviewed |
2-893 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237259 [Multi-domain] Cd Length: 830 Bit Score: 1620.16 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 2 FRSILTKIFGSRNDRILRRLNKIVIKINQLEPEFEALSDDDLKAKTDAFKARLAQGETLEQLLPEAFATVREASKRVLGM 81
Cdd:PRK12904 1 MLGLLKKIFGSRNDRELKRLRKIVDKINALEPEMEKLSDEELKAKTAEFKERLAKGETLDDLLPEAFAVVREASKRVLGM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 82 RHFDVQLLGGMVLTNRCIAEMRTGEGKTLTATLPCYLNALTGKGVHVVTVNDYLARRDAETNRPLFEFLGMTVGVNVPGL 161
Cdd:PRK12904 81 RHFDVQLIGGMVLHEGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGVILSGM 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 162 SPEQKREAYAADVTYATNSELGFDYLRDNLAHTAQERFQRYLHYALVDEVDSILIDEARTPLIISGQAEDSSELYMTVDK 241
Cdd:PRK12904 161 SPEERREAYAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDSSELYKRANK 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 242 LIPNLikqdkedseeyQGEGDFTLDLKTKQAHLTERGQEKVEQWLTeqglmsaEESLYSPSKISLLHHVYAALRAHTLFE 321
Cdd:PRK12904 241 IVPTL-----------EKEGDYTVDEKSRTVGLTEEGIEKAEKLLG-------IENLYDPENIALVHHLNQALRAHELFK 302
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 322 RDVDYIVKDGEIVIVDEHTGRTMAGRRWSDGLHQAIEAKEGVRIQSENQTVASITYQNYFRLYEKLAGMTGTADTEAFEF 401
Cdd:PRK12904 303 RDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEF 382
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 402 QQIYGLETIVVPTNRPMIRDDRTDVMFENEEYKFNAIIEDIKDCVARNQPVLVGTISIEKSELLSHALKKAGIKHNVLNA 481
Cdd:PRK12904 383 REIYNLDVVVIPTNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNA 462
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 482 KFHAQEAEIVANAGYPGTVTIATNMAGRGTDIVLGGNWKAEIAK-LDNPTEAQIEAIHTAWKARHEIVKAAGGLHIIGTE 560
Cdd:PRK12904 463 KNHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAAlLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTE 542
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 561 RHESRRIDNQLRGRSGRQGDPGSSRFYLSLDDALMRIYLNEGKLNLMRKAFSTAGEAMESKMLTKVIASAQAKVEAHNFD 640
Cdd:PRK12904 543 RHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLMRIFGSDRVKGMMDRLGMKEGEAIEHKMVTRAIENAQKKVEGRNFD 622
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 641 GRKNLLEFDDVANDQRHAIYAQRNTLLDNEDISDTIDVIRADVFNQVIDQYIPPQSLEEMWDVPALEQRLKHDFALDLPL 720
Cdd:PRK12904 623 IRKQLLEYDDVMNDQRKVIYAQRNEILEGEDLSETILDMREDVIEDLVDAYIPPGSYEEDWDLEGLEEALKTDFGLELPI 702
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 721 EKWLEEDnhFDEDALRQRVLDAAIEEYKQKESIVGEQTMRSFEKGVMLQTLDELWKEHLSAMDHLRRGIHLRGYAQKDPK 800
Cdd:PRK12904 703 EEWLEEG--LDEEELRERILEAAEEAYEEKEEELGEEQMREFERVVMLQVLDTKWREHLAAMDHLRQGIGLRGYAQKDPL 780
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 801 QEYKKECFQMFTDMLDALKLSVVTTLSRVQVrtqeeveqaerqrqemakretasmqynadedsgeentrrvgrnEPCPCG 880
Cdd:PRK12904 781 QEYKREGFELFEEMLDSIKEEVVRTLMKVQI-------------------------------------------DPCPCG 817
|
890
....*....|...
gi 492122012 881 SGKKYKHCHGSKA 893
Cdd:PRK12904 818 SGKKYKHCHGRLA 830
|
|
| secA |
PRK12906 |
preprotein translocase subunit SecA; Reviewed |
1-834 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237260 [Multi-domain] Cd Length: 796 Bit Score: 1172.95 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 1 MFRsILTKIFGSRNDRIlRRLNKIVIKINQLEPEFEALSDDDLKAKTDAFKARLAQGETLEQLLPEAFATVREASKRVLG 80
Cdd:PRK12906 1 MAN-ILKKWFDNDKREL-KRLEKIADKVNALEDEYEKLSDEQLQAKTPEFRDRIKDGESLDDLLPEAFAVAREGAKRVLG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 81 MRHFDVQLLGGMVLTNRCIAEMRTGEGKTLTATLPCYLNALTGKGVHVVTVNDYLARRDAETNRPLFEFLGMTVGVNVPG 160
Cdd:PRK12906 79 LRPFDVQIIGGIVLHEGNIAEMKTGEGKTLTATLPVYLNALTGKGVHVVTVNEYLSSRDATEMGELYRWLGLTVGLNLNS 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 161 LSPEQKREAYAADVTYATNSELGFDYLRDNLAHTAQERFQRYLHYALVDEVDSILIDEARTPLIISGQAEDSSELYMTVD 240
Cdd:PRK12906 159 MSPDEKRAAYNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISGQAEKATDLYIRAD 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 241 KLIPNLIKQDKEDSEEYQGEGDFTLDLKTKQAHLTERGQEKVEQWLteqGLmsaeESLYSPSKISLLHHVYAALRAHTLF 320
Cdd:PRK12906 239 RFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLF---GL----DNLYDSENTALAHHIDQALRANYIM 311
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 321 ERDVDYIVKDGEIVIVDEHTGRTMAGRRWSDGLHQAIEAKEGVRIQSENQTVASITYQNYFRLYEKLAGMTGTADTEAFE 400
Cdd:PRK12906 312 LKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAKTEEEE 391
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 401 FQQIYGLETIVVPTNRPMIRDDRTDVMFENEEYKFNAIIEDIKDCVARNQPVLVGTISIEKSELLSHALKKAGIKHNVLN 480
Cdd:PRK12906 392 FREIYNMEVITIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLN 471
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 481 AKFHAQEAEIVANAGYPGTVTIATNMAGRGTDIVLGGNwkaeiakldnpteaqieaihtawkarheiVKAAGGLHIIGTE 560
Cdd:PRK12906 472 AKNHAKEAEIIMNAGQRGAVTIATNMAGRGTDIKLGPG-----------------------------VKELGGLAVIGTE 522
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 561 RHESRRIDNQLRGRSGRQGDPGSSRFYLSLDDALMRIYLNEGKLNLM-RKAFSTAGEAMESKMLTKVIASAQAKVEAHNF 639
Cdd:PRK12906 523 RHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLMRRFGSDRVKAFLdRLGMNDDDQVIESRMITRQVESAQKRVEGNNY 602
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 640 DGRKNLLEFDDVANDQRHAIYAQRNTLLD-NEDISDTIDVIRADVFNQVIDQYIPPQslEEMWDVPAleqrLKHDFALDL 718
Cdd:PRK12906 603 DTRKQLLQYDDVMREQREVIYKQRMQVINeDKDLKEVLMPMIKRTVDRQVQMYTQGD--KKDWDLDA----LRDFIVSAM 676
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 719 PLEKWLEED--NHFDEDALRQRVLDAAIEEYKQKESIVGEQT-MRSFEKGVMLQTLDELWKEHLSAMDHLRRGIHLRGYA 795
Cdd:PRK12906 677 PDEETFDFEdlKGKSPEELKKRLLDIVEDNYAEKEKQLGDPTqMLEFEKVVILRVVDSHWTDHIDAMDQLRQSIGLRGYG 756
|
810 820 830
....*....|....*....|....*....|....*....
gi 492122012 796 QKDPKQEYKKECFQMFTDMLDALKLSVVTTLSRVQVRTQ 834
Cdd:PRK12906 757 QLNPLVEYQEEGYRMFEEMISNIDYDVTRLFMKAQIRQN 795
|
|
| secA |
TIGR00963 |
preprotein translocase, SecA subunit; The proteins SecA-F and SecY, not all of which are ... |
28-818 |
0e+00 |
|
preprotein translocase, SecA subunit; The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus. This model excludes SecA2 of the accessory secretory system. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273366 [Multi-domain] Cd Length: 742 Bit Score: 1130.43 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 28 INQLEPEFEALSDDDLKAKTDAFKARLA-QGETLEQLLPEAFATVREASKRVLGMRHFDVQLLGGMVLTNRCIAEMRTGE 106
Cdd:TIGR00963 1 INALEEDYEKLSDEELRNKTNEFKDRLAkQGETLDDLLPEAFAVVREASKRVLGMRPFDVQLIGGIALHKGKIAEMKTGE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 107 GKTLTATLPCYLNALTGKGVHVVTVNDYLARRDAETNRPLFEFLGMTVGVNVPGLSPEQKREAYAADVTYATNSELGFDY 186
Cdd:TIGR00963 81 GKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLILSGMSPEERREAYACDITYGTNNELGFDY 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 187 LRDNLAHTAQERFQRYLHYALVDEVDSILIDEARTPLIISGQAEDSSELYMtvdklipnlikQDKEDSEEYQGEGDFTLD 266
Cdd:TIGR00963 161 LRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPAEKSTELYV-----------QANKFAKALEKEVDYEVD 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 267 LKTKQAHLTERGQEKVEQWLTEqglmsaeESLYSPSKISLLHHVYAALRAHTLFERDVDYIVKDGEIVIVDEHTGRTMAG 346
Cdd:TIGR00963 230 EKNRAVLLTEQGMKKAEDLLGV-------DNLYDLENSPLIHYINNALKAKELFQKDVDYIVRDGEVVIVDEFTGRIMEG 302
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 347 RRWSDGLHQAIEAKEGVRIQSENQTVASITYQNYFRLYEKLAGMTGTADTEAFEFQQIYGLETIVVPTNRPMIRDDRTDV 426
Cdd:TIGR00963 303 RRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFRKIYNLEVVVVPTNRPVIRKDRPDL 382
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 427 MFENEEYKFNAIIEDIKDCVARNQPVLVGTISIEKSELLSHALKKAGIKHNVLNAKFHAQEAEIVANAGYPGTVTIATNM 506
Cdd:TIGR00963 383 VYKTEEEKWKAVVEEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAKNHEREAEIIAQAGRKGAVTIATNM 462
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 507 AGRGTDIVLggnwkaeiakldnpteaqieaihtawkarhEIVKAAGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRF 586
Cdd:TIGR00963 463 AGRGTDIKL------------------------------EEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRF 512
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 587 YLSLDDALMRIYLNEGKLNLMRKAFSTAGEAMESKMLTKVIASAQAKVEAHNFDGRKNLLEFDDVANDQRHAIYAQRNTL 666
Cdd:TIGR00963 513 FLSLEDNLMRIFGGDRLEGLMRRLGMDDDEPIESKMVSRALESAQKRVEGRNFDIRKQLLEYDDVLNKQREVIYAERRRV 592
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 667 LDNEDISDTIDVIRADVFNQVIDQYIPPQSLEEMWDVPALEQRLKHDFALDLPLEkwLEEDNHFDEDALRQRVLDAAIEE 746
Cdd:TIGR00963 593 LESEDLSELILQMLESTLDRIVDAYINEEKLSEEWDLEGLIEKLKTLFLLDGDLT--PEDLENLTSEDLKELLLEKIRAA 670
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 492122012 747 YKQKESIVGEQTMRSFEKGVMLQTLDELWKEHLSAMDHLRRGIHLRGYAQKDPKQEYKKECFQMFTDMLDAL 818
Cdd:TIGR00963 671 YDEKEEQLESERMREFERYVLLQSIDRKWKEHLDAMDLLREGIGLRSYGQKDPLIEYKNEGFNLFEEMLEDI 742
|
|
| PRK09200 |
PRK09200 |
preprotein translocase subunit SecA; Reviewed |
5-840 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 236408 [Multi-domain] Cd Length: 790 Bit Score: 924.34 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 5 ILTKIFGSRNDRILRRLNKIVIKINQLEPEFEALSDDDLKAKTDAFKARLAQGETLEQLLPEAFATVREASKRVLGMRHF 84
Cdd:PRK09200 1 MKKKLLGDIDKRRLKKYRKIVKQINKLEGKMSSLSDEELRQKTIEFKERLASGKTLDDILPEAFAVVREAAKRVLGMRPY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 85 DVQLLGGMVLTNRCIAEMRTGEGKTLTATLPCYLNALTGKGVHVVTVNDYLARRDAETNRPLFEFLGMTVGVNVPGLS-P 163
Cdd:PRK09200 81 DVQLIGALVLHEGNIAEMQTGEGKTLTATMPLYLNALEGKGVHLITVNDYLAKRDAEEMGQVYEFLGLTVGLNFSDIDdA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 164 EQKREAYAADVTYATNSELGFDYLRDNLAHTAQERFQRYLHYALVDEVDSILIDEARTPLIISGQAEDSSELYMTVDKLI 243
Cdd:PRK09200 161 SEKKAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISGKPRVQSNLYHIAAKFV 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 244 PNLIKQDkedseeyqgegDFTLDLKTKQAHLTERGQEKVEQWLteqGLmsaeESLYSPSKISLLHHVYAALRAHTLFERD 323
Cdd:PRK09200 241 KTLEEDV-----------DYEFDEEKKEVWLTDQGIEKAESYF---GI----DNLYSLEHQVLYRHIILALRAHVLFKRD 302
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 324 VDYIVKDGEIVIVDEHTGRTMAGRRWSDGLHQAIEAKEGVRIQSENQTVASITYQNYFRLYEKLAGMTGTADTEAFEFQQ 403
Cdd:PRK09200 303 VDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFE 382
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 404 IYGLETIVVPTNRPMIRDDRTDVMFENEEYKFNAIIEDIKDCVARNQPVLVGTISIEKSELLSHALKKAGIKHNVLNAKF 483
Cdd:PRK09200 383 VYNMEVVQIPTNRPIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKN 462
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 484 HAQEAEIVANAGYPGTVTIATNMAGRGTDIVLGgnwkaeiakldnpteaqieaihtawkarhEIVKAAGGLHIIGTERHE 563
Cdd:PRK09200 463 AAKEAQIIAEAGQKGAVTVATNMAGRGTDIKLG-----------------------------EGVHELGGLAVIGTERME 513
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 564 SRRIDNQLRGRSGRQGDPGSSRFYLSLDDALMRIY----LNEGKLNLMRKAfSTAGEAMESKMLTKVIASAQAKVEAHNF 639
Cdd:PRK09200 514 SRRVDLQLRGRSGRQGDPGSSQFFISLEDDLLKRFapeeLEKLKKKLKTDA-QRLTGLLFNRKVHKIVVKAQRISEGAGY 592
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 640 DGRKNLLEFDDVANDQRHAIYAQRNTLLDNE--DISDTIDVIRADVFNQVIDQYIPPQSLEEMWDVPALEQRLKHD-FAL 716
Cdd:PRK09200 593 SAREYALELDDVINIQRDVVYKERNRLLEEDdrDLIDIVILMIDVYLEAVAEEYLLEKSLLEEWIYENLSFQLNEIlSNT 672
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 717 DLPlekwleednhfDEDALRQRVLDAAIEEYKQKESIVGEQTM-RSFEKGVMLQTLDELWKEHLSAMDHLRRGIHLRGYA 795
Cdd:PRK09200 673 NFP-----------DKKEVVQFLLEEAEKQLKEKRNKLPSATLyNQFLRKVALKAIDQNWVEQVDALQQLKEGIGLRQYG 741
|
810 820 830 840
....*....|....*....|....*....|....*....|....*
gi 492122012 796 QKDPKQEYKKECFQMFTDMLDALKLSVVTTLSRVQVRTQEEVEQA 840
Cdd:PRK09200 742 QRNPIREYQKEALESFEYMYENIKKDMVRNLLLSLLVFDKEGEIV 786
|
|
| SecA2_Bac_anthr |
TIGR04397 |
accessory Sec system translocase SecA2, Bacillus type; Members of this family always occur in ... |
8-828 |
0e+00 |
|
accessory Sec system translocase SecA2, Bacillus type; Members of this family always occur in genomes with the preprotein translocase SecA (TIGR00963) and closely resemble it, hence the designation SecA2. However, this appears to mark a different type of accessory Sec system SecA2 (TIGR03714) from the serine-rich glycoprotein type found in Staphylococcus and Streptococcus, and the actinobacterial SecA2 (TIGR04221). This type occurs in species including Bacillus anthracis, Geobacillus thermoglucosidasius, Solibacillus silvestris, etc. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 275190 [Multi-domain] Cd Length: 774 Bit Score: 887.92 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 8 KIFGSRNDRILRRLNKIVIKINQLEPEFEALSDDDLKAKTDAFKARLAQGETLEQLLPEAFATVREASKRVLGMRHFDVQ 87
Cdd:TIGR04397 3 KLKGDSSARELKRYEKLVAQINELEPKMEKLSDEELRQKTITFKERLEDGKTVDDIKVEAFAVVREASKRVLGMRHYDVQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 88 LLGGMVLTNRCIAEMRTGEGKTLTATLPCYLNALTGKGVHVVTVNDYLARRDAETNRPLFEFLGMTVGVNVPGLSPEQKR 167
Cdd:TIGR04397 83 LIGGLVLLEGNIAEMPTGEGKTLVASLPSYLRALEGKGVHVITVNDYLARRDRELIGQIHEFLGLTVGLNVPMMEASEKK 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 168 EAYAADVTYATNSELGFDYLRDNLAHTAQERFQRYLHYALVDEVDSILIDEARTPLIISGQAEDSSELYmtvdKLIPNLI 247
Cdd:TIGR04397 163 EAYQADITYGVGTEFGFDYLRDNMVYSLSDKVQRPYHFAIIDEIDSVLIDEAKTPLIIAGKTGSSSELH----YICARII 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 248 KQDKEDSeeyqgegDFTLDLKTKQAHLTERGQEKVEQWLteqglmsAEESLYSPSKISLLHHVYAALRAHTLFERDVDYI 327
Cdd:TIGR04397 239 KSFEETE-------DYEYDPETKAASLTEEGITKIERAF-------GIDNLYDLEHQTLYHYLIQALRAHVLFKRDVDYI 304
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 328 VKDGEIVIVDEHTGRTMAGRRWSDGLHQAIEAKEGVRIQSENQTVASITYQNYFRLYEKLAGMTGTADTEAFEFQQIYGL 407
Cdd:TIGR04397 305 VKDGKIELVDMFTGRIMEGRSLSDGLHQAIEAKEGLEITEENKTQASITIQNYFRMYPKLSGMTGTAKTEEKEFRETYGM 384
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 408 ETIVVPTNRPMIRDDRTDVMFENEEYKFNAIIEDIKDCVARNQPVLVGTISIEKSELLSHALKKAGIKHNVLNAKFHAQE 487
Cdd:TIGR04397 385 DVVQIPTNRPRIRVDWPDRVFMTYEAKYKAVAKEVKKRHETGQPILIGTTSILQSETVAKYLDKEKIPYQLLNAKTVEQE 464
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 488 AEIVANAGYPGTVTIATNMAGRGTDIVLGgnwkaeiakldnpteaqieaihtawkarhEIVKAAGGLHIIGTERHESRRI 567
Cdd:TIGR04397 465 ADLIALAGQKGQVTIATNMAGRGTDILLG-----------------------------EGVHELGGLHVIGTERHESRRI 515
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 568 DNQLRGRSGRQGDPGSSRFYLSLDDALMRIYLNEGKLNLMRKAFSTAGEAMESKMLTKVIASAQAKVEAHNFDGRKNLLE 647
Cdd:TIGR04397 516 DNQLRGRSGRQGDPGSSQFIISLEDDMFRRYAAEELEKWKKKLKTDETGEILNKDVHEFVDKVQRIIEGSHYSAREYNLK 595
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 648 FDDVANDQRHAIYAQRNTLLDNEDISDTIDVIRADVFNQVIDQYIPPQSLEEMWDVpaleQRLKHDFALDLPLEKWLEED 727
Cdd:TIGR04397 596 LDDVINEQRNVIYQLRDKLLEEEDAISEVLKMIRSAVEQIIDQYCPEEVLPEEWDL----ERLTEELNRIFPVTFVTFDK 671
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 728 NHFDEDALrQRVLDAAIEEYKQKESIVGEQT-MRSFEKGVMLQTLDELWKEHLSAMDHLRRGIHLRGYAQKDPKQEYKKE 806
Cdd:TIGR04397 672 RIADKEEL-KDLVKDTYEQYIAALEKLPENEeIQMRLKHVMLSVIDAHWTRHLDAMNLLKEGIGLRSYQQEDPMRLYQKE 750
|
810 820
....*....|....*....|..
gi 492122012 807 CFQMFTDMLDALKLSVVTTLSR 828
Cdd:TIGR04397 751 GLELFEAMYQNIEREICTELAR 772
|
|
| secA |
CHL00122 |
preprotein translocase subunit SecA; Validated |
14-830 |
0e+00 |
|
preprotein translocase subunit SecA; Validated
Pssm-ID: 214371 [Multi-domain] Cd Length: 870 Bit Score: 879.71 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 14 NDRILRRLNKIVIKINQLEPEFEALSDDDLKAKTDAFKARLAQGETLEQLLPEAFATVREASKRVLGMRHFDVQLLGGMV 93
Cdd:CHL00122 8 NKSKLNKYQTLVNQINLLEEELKNLTDTELRSKTNKLKKRLSNGQNLNKIIPESFALTREASFRTLGLRHFDVQLIGGLV 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 94 LTNRCIAEMRTGEGKTLTATLPCYLNALTGKGVHVVTVNDYLARRDAETNRPLFEFLGMTVGVNVPGLSPEQKREAYAAD 173
Cdd:CHL00122 88 LNDGKIAEMKTGEGKTLVATLPAYLNALTGKGVHIVTVNDYLAKRDQEWMGQIYRFLGLTVGLIQEGMSSEERKKNYLKD 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 174 VTYATNSELGFDYLRDNLAHTAQERFQRYLHYALVDEVDSILIDEARTPLIISGQAEDSSELYMTVDKLIPNLIKQDked 253
Cdd:CHL00122 168 ITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEARTPLIISGQSKTNIDKYIVADELAKYLEKNV--- 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 254 seeyqgegDFTLDLKTKQAHLTERGQEKVEQWLTEQglmsaeeSLYSPSKiSLLHHVYAALRAHTLFERDVDYIVKDGEI 333
Cdd:CHL00122 245 --------HYEVDEKNKNVILTEQGILFIEKILKIE-------DLYSAND-PWIPYILNALKAKELFFKNVHYIVRNNEI 308
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 334 VIVDEHTGRTMAGRRWSDGLHQAIEAKEGVRIQSENQTVASITYQNYFRLYEKLAGMTGTADTEAFEFQQIYGLETIVVP 413
Cdd:CHL00122 309 IIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELEFEKIYNLEVVCIP 388
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 414 TNRPMIRDDRTDVMFENEEYKFNAIIEDIKDCVARNQPVLVGTISIEKSELLSHALKKAGIKHNVLNAK--FHAQEAEIV 491
Cdd:CHL00122 389 THRPMLRKDLPDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKpeNVRRESEIV 468
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 492 ANAGYPGTVTIATNMAGRGTDIVLGGN----------------------------------WKA---------------- 521
Cdd:CHL00122 469 AQAGRKGSITIATNMAGRGTDIILGGNpefklkkelydlllsyksnekistisqnflnilnSLKndlkflslsdfenlki 548
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 522 --EIAKLDNPTEAQIEAIHTAW-----------KARHEIVKAAGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYL 588
Cdd:CHL00122 549 lnEASEISIPKNSYQLSLRFLYnellekykklqEKEKKIVKKLGGLYVIGTERHESRRIDNQLRGRAGRQGDPGSSRFFL 628
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 589 SLDDALMRIYLNEGKLNLMrKAFSTAGEAMESKMLTKVIASAQAKVEAHNFDGRKNLLEFDDVANDQRHAIYAQRNTLLD 668
Cdd:CHL00122 629 SLEDNLLRIFGGDKIQNLM-QTLNLDDEPLESKLLSKSLDSAQKKVEEYYYDQRKQLFEYDQVLNKQRKAIYSERRKILE 707
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 669 NEDISDTIdvirADVFNQVIDQYIPPQSLEEMWDVPALEQRLKHDFALDLPLEKWLEEDNHFDEDALRQRVLDAAIEEYK 748
Cdd:CHL00122 708 SQSLRDWI----LAYGEQVIDDIITFLKSRKNPNNKFINLINKFKELLKLPLCFNKSDLNTLNSGELKKFLYQQFWISYD 783
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 749 QKES---IVGEQTMRSFEKGVMLQTLDELWKEHLSAMDHLRRGIHLRGYAQKDPKQEYKKECFQMFTDMLDALKLSVVTT 825
Cdd:CHL00122 784 LKELyleQIGTGLMRELERSLLLQQIDKSWKEHLQKMSLLREAIGWRSYGQKDPLIEYKNEAFNLFINMINHIRHLVIYD 863
|
....*
gi 492122012 826 LSRVQ 830
Cdd:CHL00122 864 LFRSS 868
|
|
| secA |
PRK12903 |
preprotein translocase subunit SecA; Reviewed |
8-876 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237258 [Multi-domain] Cd Length: 925 Bit Score: 877.46 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 8 KIFGSRNdRILRRLNKIVIKINQLEPEFEALSDDDLKAKTDAFKARLAQGETLEQLLPEAFATVREASKRVLGMRHFDVQ 87
Cdd:PRK12903 5 KLFFFKS-TEMRIAEKILKQINDLEPYYRNLTDEELANKTNEFKDRLKNGETLEDIRVEAFAVAREATKRVLGKRPYDVQ 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 88 LLGGMVLTNRCIAEMRTGEGKTLTATLPCYLNALTGKGVHVVTVNDYLARRDAETNRPLFEFLGMTVGVNVPGLSPEQKR 167
Cdd:PRK12903 84 IIGGIILDLGSVAEMKTGEGKTITSIAPVYLNALTGKGVIVSTVNEYLAERDAEEMGKVFNFLGLSVGINKANMDPNLKR 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 168 EAYAADVTYATNSELGFDYLRDNLAHTAQERFQRYLHYALVDEVDSILIDEARTPLIISGQAEDSSELYMTVDKLIPNLI 247
Cdd:PRK12903 164 EAYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLIISGGQSNDSNLYLAADQFVRTLK 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 248 kqdkedseeyqgEGDFTLDLKTKQAHLTERGQEKVEQWLTEQGLMSAEESlyspskiSLLHHVYAALRAHTLFERDVDYI 327
Cdd:PRK12903 244 ------------EDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENS-------ELVHRIQNALRAHKVMKEDVEYI 304
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 328 VKDGEIVIVDEHTGRTMAGRRWSDGLHQAIEAKEGVRIQSENQTVASITYQNYFRLYEKLAGMTGTADTEAFEFQQIYGL 407
Cdd:PRK12903 305 VRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFIDIYNM 384
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 408 ETIVVPTNRPMIRDDRTDVMFENEEYKFNAIIEDIKDCVARNQPVLVGTISIEKSELLSHALKKAGIKHNVLNAKFHAQE 487
Cdd:PRK12903 385 RVNVVPTNKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQNARE 464
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 488 AEIVANAGYPGTVTIATNMAGRGTDIVLGgnwkAEIAKLdnpteaqieaihtawkarheivkaaGGLHIIGTERHESRRI 567
Cdd:PRK12903 465 AEIIAKAGQKGAITIATNMAGRGTDIKLS----KEVLEL-------------------------GGLYVLGTDKAESRRI 515
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 568 DNQLRGRSGRQGDPGSSRFYLSLDDALMRIYLNEGKLnlmRKAF-STAGEAMESKMLTKVIASAQAKVEAHNFDGRKNLL 646
Cdd:PRK12903 516 DNQLRGRSGRQGDVGESRFFISLDDQLFRRFSNFDKI---KEAFkKLGDDEIKSKFFSKALLNAQKKIEGFNFDTRKNVL 592
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 647 EFDDVANDQRHAIYAQRNTLLDNEDISDTIDVIRADVFNQVIDQYIPPQSlEEMWDVPALEQRLKHDFaLDLPLEKWLEE 726
Cdd:PRK12903 593 DYDDVIRQQRDLIYAQRDLILIADDLSHVIEKMISRAVEQILKNSFIILK-NNTINYKELVEFLNDNL-LRITHFKFSEK 670
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 727 D-NHFDEDALRQRVLDAAIEEYKQKESI----VGEQTMRSFEKGVMLQTLDELWKEHLSAMDHLRRGIHLRGYAQKDPKQ 801
Cdd:PRK12903 671 DfENYHKEELAQYLIEALNEIYFKKRQVildkIALNTFFESERYIILSALDKYWQNHIDTMDKLRSGVNLVQYSQKNPYQ 750
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 492122012 802 EYKKECFQMFTDMLDALKLSVVTTLSRvqVRTQEEVEQAERQRQEMAKRETASMQYNADEDSGEENTRRVGRNEP 876
Cdd:PRK12903 751 VYTEEGTKKFNILLQEIAYDVIVSLFN--NPNAEKILIITEILSDGINNSDINDRPQELIDQIIESEEERLKALR 823
|
|
| secA |
PRK12901 |
preprotein translocase subunit SecA; Reviewed |
2-890 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237256 [Multi-domain] Cd Length: 1112 Bit Score: 873.58 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 2 FRSILTKIFGSRNDRILRRLNKIVIKINQLEPEFEALSDDDLKAKTDAFKARLAQG------------------------ 57
Cdd:PRK12901 1 MNEFLKKLFGDKSERDLKEIQPIVEKIKAEYPELEALSNDELRAKTDEFKQYIKEAvadidakieelkaeaiesldider 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 58 -------------------ETLEQLLPEAFATVREASKRVLG-------------------------------------- 80
Cdd:PRK12901 81 ediyaqidklekeayeileKVLDEILPEAFAIVKETARRFAEneeievtatdfdrelaatkdfvtiegdkaiwknhwdag 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 81 -------MRHFDVQLLGGMVLTNRCIAEMRTGEGKTLTATLPCYLNALTGKGVHVVTVNDYLARRDAETNRPLFEFLGMT 153
Cdd:PRK12901 161 gneitwdMVHYDVQLIGGVVLHQGKIAEMATGEGKTLVATLPVYLNALTGNGVHVVTVNDYLAKRDSEWMGPLYEFHGLS 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 154 VGVnVPGLSP--EQKREAYAADVTYATNSELGFDYLRDNLAHTAQERFQRYLHYALVDEVDSILIDEARTPLIISGQAED 231
Cdd:PRK12901 241 VDC-IDKHQPnsEARRKAYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSVLIDDARTPLIISGPVPK 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 232 SSE-LYMTVDKLIPNLIKQDKE-------DSEEYQGEGD----------------------------------------- 262
Cdd:PRK12901 320 GDDqEFEELKPRVERLVEAQRKlatqflaEAKKLIAEGDkkegglallrayrglpknkalikflseegikallqktenfy 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 263 ----------------FTLDLKTKQAHLTERGQE----------------------KVEQ--WLTEQGLMSAEESLYS-- 300
Cdd:PRK12901 400 mqdnnrempevdeelyFVIDEKNNSVELTDKGIDyitgndedpdffvlpdigtelaEIENegGLDEEEEAEKKEELFQdy 479
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 301 PSKISLLHHVYAALRAHTLFERDVDYIVKDGEIVIVDEHTGRTMAGRRWSDGLHQAIEAKEGVRIQSENQTVASITYQNY 380
Cdd:PRK12901 480 SVKSERVHTLNQLLKAYTLFEKDDEYVVMDGKVKIVDEQTGRIMEGRRYSDGLHQAIEAKENVKIEAATQTFATITLQNY 559
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 381 FRLYEKLAGMTGTADTEAFEFQQIYGLETIVVPTNRPMIRDDRTDVMFENEEYKFNAIIEDIKDCVARNQPVLVGTISIE 460
Cdd:PRK12901 560 FRMYHKLAGMTGTAETEAGEFWDIYKLDVVVIPTNRPIARKDKEDLVYKTKREKYNAVIEEITELSEAGRPVLVGTTSVE 639
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 461 KSELLSHALKKAGIKHNVLNAKFHAQEAEIVANAGYPGTVTIATNMAGRGTDIVLGGNwkaeiakldnpteaqieaihta 540
Cdd:PRK12901 640 ISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQPGTVTIATNMAGRGTDIKLSPE---------------------- 697
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 541 wkarheiVKAAGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDDALMRIYLNEGKLNLMRKAFSTAGEAMES 620
Cdd:PRK12901 698 -------VKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDNLMRLFGSERIAKVMDRMGLKEGEVIQH 770
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 621 KMLTKVIASAQAKVEAHNFDGRKNLLEFDDVANDQRHAIYAQRNTLLDNEDIS-DTIDVIRaDVFNQVIDQYIPPQSLEE 699
Cdd:PRK12901 771 SMISKSIERAQKKVEENNFGIRKRLLEYDDVMNSQREVIYKRRRHALMGERLGmDIANMIY-DVCEAIVENNKVANDYKG 849
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 700 mwdvpaLEQRLKHDFALDLPLEKwlEEDNHFDEDALRQRVLDAAIEEYKQK-----------------------ESIV-- 754
Cdd:PRK12901 850 ------FKFELIRTLAMESPITE--EEFNKLKKDELTDKLYDAALENYQRKmeriaeiafpvikqvyeeqgnmyERIVvp 921
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 755 ---------------------GEQTMRSFEKGVMLQTLDELWKEHLSAMDHLRRGIHLRGYAQKDPKQEYKKECFQMFTD 813
Cdd:PRK12901 922 ftdgkrtlnvvtnlkeayeteGKEIVKDFEKNITLHIIDEAWKEHLREMDELKQSVQNASYEQKDPLLIYKFESFELFKN 1001
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 814 MLDALKLSVVTTLSRVQVRTQEEV---EQAERQRQEMAKRETASMQYNADE------DSGEENTR-------RVGRNEPC 877
Cdd:PRK12901 1002 MVDKVNREVISFLFKGEIPVQEAPeirEAAPERRLDPKYRTQKEEIQDSDQraaasrDTGAQVKEtpvrvekKIGRNDPV 1081
|
1130
....*....|....*...
gi 492122012 878 PC-----GSGKKYKHCHG 890
Cdd:PRK12901 1082 PCqnvdgGSGKKYKFKHA 1099
|
|
| SecA_DEAD |
smart00957 |
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with ... |
6-402 |
0e+00 |
|
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the.
Pssm-ID: 214937 [Multi-domain] Cd Length: 380 Bit Score: 751.18 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 6 LTKIFGSRNDRILRRLNKIVIKINQLEPEFEALSDDDLKAKTDAFKARLAQGETLEQLLPEAFATVREASKRVLGMRHFD 85
Cdd:smart00957 1 LKKLFGSKNDRELKRLRKIVDQINALEPEMEALSDEELRAKTAEFKERLAEGESLDDLLPEAFAVVREAAKRVLGMRHFD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 86 VQLLGGMVLTNRCIAEMRTGEGKTLTATLPCYLNALTGKGVHVVTVNDYLARRDAETNRPLFEFLGMTVGVNVPGLSPEQ 165
Cdd:smart00957 81 VQLIGGIVLHEGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLTVGVIVSGMSPEE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 166 KREAYAADVTYATNSELGFDYLRDNLAHTAQERFQRYLHYALVDEVDSILIDEARTPLIISGQAED-SSELYMTVDKLIP 244
Cdd:smart00957 161 RRAAYAADITYGTNNEFGFDYLRDNMAFSKEDKVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDeSSDLYHRADKFVP 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 245 NLIKQDkedseeyqgegDFTLDLKTKQAHLTERGQEKVEQWLTeqglmsaEESLYSPSKISLLHHVYAALRAHTLFERDV 324
Cdd:smart00957 241 RLKEDE-----------DYTVDEKSRTVELTEEGIEKAEKLLG-------IDNLYDPENIELLHHVNQALRAHYLFKRDV 302
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 492122012 325 DYIVKDGEIVIVDEHTGRTMAGRRWSDGLHQAIEAKEGVRIQSENQTVASITYQNYFRLYEKLAGMTGTADTEAFEFQ 402
Cdd:smart00957 303 DYIVRDGEVVIVDEFTGRVMEGRRYSDGLHQAIEAKEGVEIQEENQTLATITFQNYFRMYKKLSGMTGTAKTEAEEFR 380
|
|
| secA2 |
TIGR03714 |
accessory Sec system translocase SecA2; Members of this protein family are homologous to SecA ... |
14-819 |
0e+00 |
|
accessory Sec system translocase SecA2; Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 163426 [Multi-domain] Cd Length: 762 Bit Score: 717.59 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 14 NDRILRRLNKIVIKINQLEPEFEALSDDDLKAKTDAFKARLAQGETLEQLLPEAFATVREASKRVLGMRHFDVQLLGGMV 93
Cdd:TIGR03714 2 NNLRLKKLRKILNKINALKGKMATLSDEELQAKTAEFKNRLVEGESLDDILPEAYAVVREADKRVLGMFPYDVQVLGAIV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 94 LTNRCIAEMRTGEGKTLTATLPCYLNALTGKGVHVVTVNDYLARRDAETNRPLFEFLGMTVGVNV-----PGLSPEQKRE 168
Cdd:TIGR03714 82 LHQGNIAEMKTGEGKTLTATMPLYLNALTGKGAMLVTTNDYLAKRDAEEMGPVYEWLGLTVSLGVvddpdEEYDANEKRK 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 169 AYAADVTYATNSELGFDYLRDNLAHTAQERFQRYLHYALVDEVDSILIDEARTPLIISGQAEDSSELYMTVDKLIPNLIK 248
Cdd:TIGR03714 162 IYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVISGAPRVQSNLYHIADTFVRTLKE 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 249 QDkedseeyqgegDFTLDlktkqahltergQEKVEQWLTEQGLMSAE-----ESLYSPSKISLLHHVYAALRAHTLFERD 323
Cdd:TIGR03714 242 DV-----------DYIFK------------KDKKEVWLTDKGIEKAEqyfkiDNLYSEEYFELVRHINLALRAHYLFKRN 298
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 324 VDYIVKDGEIVIVDEHTGRTMAGRRWSDGLHQAIEAKEGVRIQSENQTVASITYQNYFRLYEKLAGMTGTADTEAFEFQQ 403
Cdd:TIGR03714 299 KDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIE 378
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 404 IYGLETIVVPTNRPMIRDDRTDVMFENEEYKFNAIIEDIKDCVARNQPVLVGTISIEKSELLSHALKKAGIKHNVLNAKF 483
Cdd:TIGR03714 379 TYSLSVVKIPTNKPIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQN 458
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 484 HAQEAEIVANAGYPGTVTIATNMAGRGTDIVLGgnwkaeiakldnpteaqieaihtawkarhEIVKAAGGLHIIGTERHE 563
Cdd:TIGR03714 459 AAKEAQIIAEAGQKGAVTVATSMAGRGTDIKLG-----------------------------KGVAELGGLAVIGTERME 509
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 564 SRRIDNQLRGRSGRQGDPGSSRFYLSLDDALMRIY----LNEGKLNLMRKAFSTAGEAMESKMLTKVIASAQAKVEAHNF 639
Cdd:TIGR03714 510 NSRVDLQLRGRSGRQGDPGSSQFFVSLEDDLIKRWspswLKKYYKKYSVKDSKLKPSALFKRRFRKIVEKAQRASEDKGE 589
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 640 DGRKNLLEFDDVANDQRHAIYAQRNTLLDNEDISDTiDVIRadVFNQVIDQYIPPQSLEemwdvpalEQRLKHDFALD-- 717
Cdd:TIGR03714 590 SAREQTNEFEESLSIQRENIYAERNRLIEGSDFLDD-DVDQ--IIDDVFNMYAEEQDLS--------NKSLLKRFILEnl 658
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 718 -LPLEKWLEEDNHFDEDALRQRVLDAAIEEYKQKESIVGEQTMRS-FEKGVMLQTLDELWKEHLSAMDHLRRGIHLRGYA 795
Cdd:TIGR03714 659 sYQFKNDPDEFDLKNKEAIKDFLKEIADKELSEKKKVLNNDYLFNdFERLSILKAIDENWIEQVDYLQQLKTVVTNRQNG 738
|
810 820
....*....|....*....|....
gi 492122012 796 QKDPKQEYKKECFQMFTDMLDALK 819
Cdd:TIGR03714 739 QRNPIFEYHKEALESYEYMKKEIK 762
|
|
| SecA_DEAD |
pfam07517 |
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with ... |
6-401 |
0e+00 |
|
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the pfam00270.
Pssm-ID: 462190 [Multi-domain] Cd Length: 379 Bit Score: 692.70 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 6 LTKIFGSRNDRILRRLNKIVIKINQLEPEFEALSDDDLKAKTDAFKARLAQGETLEQLLPEAFATVREASKRVLGMRHFD 85
Cdd:pfam07517 1 LKKIFGSPNERDLKRLRKIVDQINALEEELKALSDEELRAKTDELRERLREGESLDDILPEAFALVREAAKRVLGMRHYD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 86 VQLLGGMVLTNRCIAEMRTGEGKTLTATLPCYLNALTGKGVHVVTVNDYLARRDAETNRPLFEFLGMTVGVNVPGLSPEQ 165
Cdd:pfam07517 81 VQLIGGLVLHEGKIAEMKTGEGKTLTATLPAYLNALSGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLTVGVITSDMDPEE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 166 KREAYAADVTYATNSELGFDYLRDNLAHTAQERFQRYLHYALVDEVDSILIDEARTPLIISGQAEDSSELYMTVDKLIPN 245
Cdd:pfam07517 161 RRAAYNADITYGTNNELGFDYLRDNMATSKEDKVQRGLNFAIVDEVDSILIDEARTPLIISGPSEDDSELYREADRLVKS 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 246 LikqdkedseeyQGEGDFTLDLKTKQAHLTERGQEKVEQWLteqglmsAEESLYSPSKISLLHHVYAALRAHTLFERDVD 325
Cdd:pfam07517 241 L-----------EEDGDYEIDEKSKNVELTEKGIEKIEKLL-------GIDNLYDPENVELLHHINQALKAHHLFKRDVD 302
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 492122012 326 YIVKDGEIVIVDEHTGRTMAGRRWSDGLHQAIEAKEGVRIQSENQTVASITYQNYFRLYEKLAGMTGTADTEAFEF 401
Cdd:pfam07517 303 YIVRDGEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEITPESQTLASITYQNFFRLYPKLSGMTGTAKTEAEEF 378
|
|
| secA |
PRK12898 |
preprotein translocase subunit SecA; Reviewed |
1-649 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237253 [Multi-domain] Cd Length: 656 Bit Score: 650.53 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 1 MFRSILTKIFGSRNDRILRRLNKIVIKINQLEPEFEALSDDDLKAKTDAFKARL-AQGETLEQLLPEAFATVREASKRVL 79
Cdd:PRK12898 21 WLERVLGRLAGRVRGRAARRQRLLADRVLAAAEALAGLSEEALRARSLALRARLrARDGFRDALLAEAFALVREASGRVL 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 80 GMRHFDVQLLGGMVLTNRCIAEMRTGEGKTLTATLPCYLNALTGKGVHVVTVNDYLARRDAETNRPLFEFLGMTVGVNVP 159
Cdd:PRK12898 101 GQRHFDVQLMGGLALLSGRLAEMQTGEGKTLTATLPAGTAALAGLPVHVITVNDYLAERDAELMRPLYEALGLTVGCVVE 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 160 GLSPEQKREAYAADVTYATNSELGFDYLRDNLA---------------HTAQER----FQRYLHYALVDEVDSILIDEAR 220
Cdd:PRK12898 181 DQSPDERRAAYGADITYCTNKELVFDYLRDRLAlgqrasdarlaleslHGRSSRstqlLLRGLHFAIVDEADSVLIDEAR 260
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 221 TPLIISGQAEDSSELYMTvdklipnliKQDKEDSEEYQGEGDFTLDLKTKQAHLTERGQEKVEQWLTE-----QGLMSAE 295
Cdd:PRK12898 261 TPLIISAPAKEADEAEVY---------RQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESlppawRGAVRRE 331
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 296 EslyspskisLLHHvyaALRAHTLFERDVDYIVKDGEIVIVDEHTGRTMAGRRWSDGLHQAIEAKEGVRIQSENQTVASI 375
Cdd:PRK12898 332 E---------LVRQ---ALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARI 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 376 TYQNYFRLYEKLAGMTGTADTEAFEFQQIYGLETIVVPTNRPMIRDDRTDVMFENEEYKFNAIIEDIKDCVARNQPVLVG 455
Cdd:PRK12898 400 TYQRFFRRYLRLAGMTGTAREVAGELWSVYGLPVVRIPTNRPSQRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVG 479
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 456 TISIEKSELLSHALKKAGIKHNVLNAKFHAQEAEIVANAGYPGTVTIATNMAGRGTDIVLGgnwkaeiakldnpteaqie 535
Cdd:PRK12898 480 TRSVAASERLSALLREAGLPHQVLNAKQDAEEAAIVARAGQRGRITVATNMAGRGTDIKLE------------------- 540
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 536 aihtawkarhEIVKAAGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDDALMRIYLNEGKLNLMRKAF--ST 613
Cdd:PRK12898 541 ----------PGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEAILSLEDDLLQSFLGSRGLAIRRMELlgPR 610
|
650 660 670
....*....|....*....|....*....|....*.
gi 492122012 614 AGEAMESKMLTKviasAQAKVEAHNFDGRKNLLEFD 649
Cdd:PRK12898 611 GGRALGALLLRR----AQRRAERLHARARRALLHAD 642
|
|
| SecA2_Mycobac |
TIGR04221 |
accessory Sec system translocase SecA2, Actinobacterial type; Members of this family are the ... |
8-814 |
2.96e-173 |
|
accessory Sec system translocase SecA2, Actinobacterial type; Members of this family are the SecA2 subunit of the Mycobacterial type of accessory secretory system. This family is quite different SecA2 of the Staph/Strep type (TIGR03714).
Pssm-ID: 275062 [Multi-domain] Cd Length: 762 Bit Score: 520.92 E-value: 2.96e-173
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 8 KIFGSRNDRILRRLNKIVIKINQLEPEFEALSDDDLkakTDAFKARLAQGETLEqlLPEAFATVREASKRVLGMRHFDVQ 87
Cdd:TIGR04221 7 KALGSSTERNQKRSLAIVPAAASRMKELSALDDEEL---TKAARDLVLSGEAAD--AAQFLAILREAAERTLGMRPFDVQ 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 88 LLGGMVLTNRCIAEMRTGEGKTLTATLPCYLNALTGKGVHVVTVNDYLARRDAETNRPLFEFLGMTVGVNVPGLSPEQKR 167
Cdd:TIGR04221 82 LLGALRLLAGDVIEMATGEGKTLAGAMAATGFALLGKRVHVVTVNDYLARRDAEWMGPLVDFFGLTVGWVTEDSTPDERR 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 168 EAYAADVTYATNSELGFDYLRDNLAHTAQERFQRYLHYALVDEVDSILIDEARTPLIISGQAEDSSELYMtvdklIPNLI 247
Cdd:TIGR04221 162 AAYACDVTYASVNEIGFDVLRDQLVTDRADLVQPAADVALIDEADSVLVDEALVPLVLAGNEPGEAPRGR-----ITDLV 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 248 KQDKEDSeeyqgegDFTLDLKTKQAHLTERGQEKVEQWLteqglmsAEESLYSPSKI-SLLHHVYAALRAHTLFERDVDY 326
Cdd:TIGR04221 237 RRLREDK-------HYTVDEDGRNVHLTEDGARAVEAEL-------GIDDLYSEEHVgTTLVQVNVALHAHALLIRDVHY 302
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 327 IVKDGEIVIVDEHTGRTMAGRRWSDGLHQAIEAKEGVRIQSENQTVASITYQNYFRLYEKLAGMTGTADTEAFEFQQIYG 406
Cdd:TIGR04221 303 IVRDGKVALIDASRGRVAQLQRWPDGLQAAVEAKEGLEVTEGGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQFYD 382
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 407 LETIVVPTNRPMIRDDRTDVMFENEEYKFNAIIEDIKDCVARNQPVLVGTISIEKSELLSHALKKAGIKHNVLNAKFHAQ 486
Cdd:TIGR04221 383 LGVSVIPPNTPNIRFDEADRVYATAAEKNDAIVEEIAEVHKTGQPVLVGTQDVAESEELAEALLEAGVPCNVLNAKNDAE 462
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 487 EAEIVANAGYPGTVTIATNMAGRGTDIVLGGNWKAEiakldnpteaqieaihtawkarHEIVKAAGGLHIIGTERHESRR 566
Cdd:TIGR04221 463 EAAIIAEAGDIGAVTVSTQMAGRGTDIRLGGSDEAD----------------------HDRVAELGGLHVIGTGRHRTAR 520
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 567 IDNQLRGRSGRQGDPGSSRFYLSLDDALMRIYLNEGKLnlmrKAFSTAGEAMESKMLTKVIASAQAKVEAHNFDGRKNLL 646
Cdd:TIGR04221 521 LDNQLRGRAGRQGDPGSSVFFVSLEDDVVAVGGAGETV----PAQPAEDGRIESPRVQDFVDHAQRVAEGQLLEIHANTW 596
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 647 EFDDVANDQRHAIYAQRNTLLDNedisdtiDVIRADVFNQVIDQYippqslEEMwdvpaleqrlkhdfaldlplekwlee 726
Cdd:TIGR04221 597 RYNQLIAQQRDIIDERRETLLDT-------DTAWQELSERAADRA------AEL-------------------------- 637
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 727 DNHFDEDALrqrvldaaieeykqkesivgEQTMRSfekgVMLQTLDELWKEHLSAMDHLRRGIHLRGYAQKDPKQEYKKE 806
Cdd:TIGR04221 638 KKEVSEDAL--------------------ERAARE----IMLYHLDRGWAEHLAYLDDVRESIHLRALGRETPLDEFHRM 693
|
....*...
gi 492122012 807 CFQMFTDM 814
Cdd:TIGR04221 694 AVRAFKEL 701
|
|
| DEXDc_SecA |
cd17928 |
DEXD-box helicase domain of SecA; SecA is a part of the Sec translocase that transports the ... |
42-414 |
1.86e-130 |
|
DEXD-box helicase domain of SecA; SecA is a part of the Sec translocase that transports the vast majority of bacterial and ER-exported proteins. SecA binds both the signal sequence and the mature domain of the preprotein emerging from the ribosome. SecA belongs to the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350686 [Multi-domain] Cd Length: 230 Bit Score: 390.36 E-value: 1.86e-130
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 42 DLKAKTDAFKARLAQGETLEQLLPEAFATVREASKRVLGMRHFDVQLLGGMVLTNRCIAEMRTGEGKTLTATLPCYLNAL 121
Cdd:cd17928 1 ELRAKTDELRERLAKGETLDDLLPEAFALVREAARRVLGMRPFDVQLIGGLVLHEGKIAEMKTGEGKTLTATLPAYLNAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 122 TGKGVHVVTVNDYLARRDAETNRPLFEFLGMTVGVNVPGLSPEQKREAYAADVTYATNSELGFDYLRDNLAHTAQERFQR 201
Cdd:cd17928 81 TGKGVHVVTVNDYLARRDAEWMGPLYEFLGLTVGVILSDMSPDERREAYAADITYGTNNELGFDYLRDNMVTSKEDLVQR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 202 YLHYALVDEVDSILIDEARTPLIISGqaedsselymtvdklipnlikqdkedseeyqgegdftldlktkqahltergqek 281
Cdd:cd17928 161 GLNFAIVDEVDSILIDEARTPLIISG------------------------------------------------------ 186
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 282 veqwlteqglmsaeeslyspskisllhhvyaalrahtlferdvdyivkdgeivivdehtgrtmagrrwsdglhqaieake 361
Cdd:cd17928 --------------------------------------------------------------------------------
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 492122012 362 gvriqsenqTVASITYQNYFRLYEKLAGMTGTADTEAFEFQQIYGLETIVVPT 414
Cdd:cd17928 187 ---------TLATITFQNYFRLYPKLAGMTGTAKTEAEEFREIYNLDVVVIPT 230
|
|
| SecA_SW |
pfam07516 |
SecA Wing and Scaffold domain; SecA protein binds to the plasma membrane where it interacts ... |
617-830 |
5.19e-97 |
|
SecA Wing and Scaffold domain; SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This family is composed of two C-terminal alpha helical subdomains: the wing and scaffold subdomains.
Pssm-ID: 462189 [Multi-domain] Cd Length: 213 Bit Score: 302.49 E-value: 5.19e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 617 AMESKMLTKVIASAQAKVEAHNFDGRKNLLEFDDVANDQRHAIYAQRNTLLDNEDISDTIDVIRADVFNQVIDQYIPPQS 696
Cdd:pfam07516 1 PIEHKMVSKAIENAQKKVEGRNFDIRKNLLEYDDVMNQQREVIYAQRREILEGEDLKEDILEMIEDVVDDIVDEYIPPEE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 697 LEEMWDVPALEQRLKHDFALDLPLEKWLEEDnHFDEDALRQRVLDAAIEEYKQKESIVGEQTMRSFEKGVMLQTLDELWK 776
Cdd:pfam07516 81 SPEEWDLEGLKEALNEIFGLELPISEWEEEE-DLDKEELKERLLEAAEEAYEEKEEEIGPELMRELERVVLLQVIDSKWK 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 492122012 777 EHLSAMDHLRRGIHLRGYAQKDPKQEYKKECFQMFTDMLDALKLSVVTTLSRVQ 830
Cdd:pfam07516 160 EHLDAMDQLRQGIGLRAYGQKDPLVEYKREGFELFEEMLDAIREEVVRYLFRVQ 213
|
|
| SF2_C_secA |
cd18803 |
C-terminal helicase domain of the protein translocase subunit secA; SecA is a component of the ... |
420-589 |
1.91e-78 |
|
C-terminal helicase domain of the protein translocase subunit secA; SecA is a component of the Sec translocase that transports the vast majority of bacterial and ER-exported proteins. SecA binds both the signal sequence and the mature domain of the preprotein emerging from the ribosome. SecA is a DEAD-like helicase belonging to superfamily (SF)2, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. Similar to SF1 helicases, SF2 helicases do not form toroidal structures like SF3-6 helicases. Their helicase core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.
Pssm-ID: 350190 [Multi-domain] Cd Length: 141 Bit Score: 250.54 E-value: 1.91e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 420 RDDRTDVMFENEEYKFNAIIEDIKDCVARNQPVLVGTISIEKSELLSHALKKAGIKHNVLNAKFHAQEAEIVANAGYPGT 499
Cdd:cd18803 1 RKDLPDLVYKTEEEKWKAIVEEVKELHAKGQPVLVGTRSVEKSELLSALLKEEGIPHNVLNAKNHAREAEIIAEAGQKGA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 500 VTIATNMAGRGTDIVLGGNwkaeiakldnpteaqieaihtawkarheiVKAAGGLHIIGTERHESRRIDNQLRGRSGRQG 579
Cdd:cd18803 81 VTIATNMAGRGTDIKLGGN-----------------------------VEELGGLHVIGTERHESRRIDNQLRGRAGRQG 131
|
170
....*....|
gi 492122012 580 DPGSSRFYLS 589
Cdd:cd18803 132 DPGSSRFYLS 141
|
|
| SecA_PP_bind |
smart00958 |
SecA preprotein cross-linking domain; The SecA ATPase is involved in the insertion and ... |
228-358 |
3.78e-59 |
|
SecA preprotein cross-linking domain; The SecA ATPase is involved in the insertion and retraction of preproteins through the plasma membrane. This domain has been found to cross-link to preproteins, thought to indicate a role in preprotein binding. The pre-protein cross-linking domain is comprised of two sub domains that are inserted within the ATPase domain.
Pssm-ID: 214938 [Multi-domain] Cd Length: 114 Bit Score: 196.90 E-value: 3.78e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 228 QAEDSSELYMTVDKLIPNLIKQdkedseeyqgEGDFTLDLKTKQAHLTERGQEKVEQWLTEqglmsaeESLYSPSKISLL 307
Cdd:smart00958 1 PAEDSSELYKRADELVPTLKKD----------EEDYEVDEKSRQVALTEEGIEKAEKLLGI-------DNLYDPENIELV 63
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 492122012 308 HHVYAALRAHTLFERDVDYIVKDGEIVIVDEHTGRTMAGRRWSDGLHQAIE 358
Cdd:smart00958 64 HHVNQALRAHKLFKRDVDYIVRDGEVVIVDEFTGRVMPGRRWSDGLHQAIE 114
|
|
| SecA_PP_bind |
pfam01043 |
SecA preprotein cross-linking domain; The SecA ATPase is involved in the insertion and ... |
231-358 |
5.09e-53 |
|
SecA preprotein cross-linking domain; The SecA ATPase is involved in the insertion and retraction of preproteins through the plasma membrane. This domain has been found to cross-link to preproteins, thought to indicate a role in preprotein binding. The pre-protein cross-linking domain is comprised of two sub domains that are inserted within the ATPase domain.
Pssm-ID: 460039 [Multi-domain] Cd Length: 110 Bit Score: 179.92 E-value: 5.09e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 231 DSSELYMTVDKLIPNLIKQDkedseeyqgegDFTLDLKTKQAHLTERGQEKVEQWLteqGLmsaeESLYSPSKISLLHHV 310
Cdd:pfam01043 1 KSTELYRQADKFVKQLKEDE-----------DYEVDEKAKTVELTEEGIEKAEKLL---GI----DNLYDPENIELVHHI 62
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 492122012 311 YAALRAHTLFERDVDYIVKDGEIVIVDEHTGRTMAGRRWSDGLHQAIE 358
Cdd:pfam01043 63 NQALKAHHLFKRDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIE 110
|
|
| SF2-N |
cd00046 |
N-terminal DEAD/H-box helicase domain of superfamily 2 helicases; The DEAD/H-like superfamily ... |
98-224 |
8.10e-17 |
|
N-terminal DEAD/H-box helicase domain of superfamily 2 helicases; The DEAD/H-like superfamily 2 helicases comprise a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This N-terminal domain contains the ATP-binding region.
Pssm-ID: 350668 [Multi-domain] Cd Length: 146 Bit Score: 78.21 E-value: 8.10e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 98 CIAEMRTGEGKTLTATLPCYLNALT-GKGVHVVTVNDYLARRDAETNRPLFeFLGMTVGVNVPGLSPEQKREAYA--ADV 174
Cdd:cd00046 4 VLITAPTGSGKTLAALLAALLLLLKkGKKVLVLVPTKALALQTAERLRELF-GPGIRVAVLVGGSSAEEREKNKLgdADI 82
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 492122012 175 TYATNSELGFDYLRDNLAHTAQerfqryLHYALVDEVDSILIDEARTPLI 224
Cdd:cd00046 83 IIATPDMLLNLLLREDRLFLKD------LKLIIVDEAHALLIDSRGALIL 126
|
|
| YecA |
COG3318 |
Uncharacterized conserved protein YecA, UPF0149 family, contains C-terminal Zn-binding SEC-C ... |
868-892 |
2.63e-11 |
|
Uncharacterized conserved protein YecA, UPF0149 family, contains C-terminal Zn-binding SEC-C motif [Function unknown];
Pssm-ID: 442547 [Multi-domain] Cd Length: 45 Bit Score: 59.14 E-value: 2.63e-11
10 20
....*....|....*....|....*
gi 492122012 868 TRRVGRNEPCPCGSGKKYKHCHGSK 892
Cdd:COG3318 21 EPKVGRNDPCPCGSGKKYKKCCGAN 45
|
|
| PRK05590 |
PRK05590 |
hypothetical protein; Provisional |
841-892 |
1.12e-10 |
|
hypothetical protein; Provisional
Pssm-ID: 235521 Cd Length: 166 Bit Score: 61.14 E-value: 1.12e-10
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 492122012 841 ERQRQEMAKRETASMQYnadedsgeENTRRVGRNEPCPCGSGKKYKHCHGSK 892
Cdd:PRK05590 123 EEKRKEIHKEWKKSKTV--------VNENKVGRNDPCPCGSGKKYKKCCGKN 166
|
|
| SEC-C |
pfam02810 |
SEC-C motif; The SEC-C motif found in the C-terminus of the SecA protein, in the middle of ... |
873-890 |
1.21e-10 |
|
SEC-C motif; The SEC-C motif found in the C-terminus of the SecA protein, in the middle of some SWI2 ATPases and also solo in several proteins. The motif is predicted to chelate zinc with the CXC and C[HC] pairs that constitute the most conserved feature of the motif. It is predicted to be a potential nucleic acid binding domain.
Pssm-ID: 460704 [Multi-domain] Cd Length: 19 Bit Score: 56.72 E-value: 1.21e-10
|
| DEAD-like_helicase_N |
cd17912 |
N-terminal helicase domain of the DEAD-box helicase superfamily; The DEAD-like helicase ... |
98-139 |
3.38e-09 |
|
N-terminal helicase domain of the DEAD-box helicase superfamily; The DEAD-like helicase superfamily is a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. The N-terminal domain contains the ATP-binding region.
Pssm-ID: 350670 [Multi-domain] Cd Length: 81 Bit Score: 54.45 E-value: 3.38e-09
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 492122012 98 CIAEMRTGEGKTLTATLPCYLNALTGKGVHVVTVNDYLARRD 139
Cdd:cd17912 2 ILHLGPTGSGKTLVAIQKIASAMSSGKSVLVVTPTKLLAHEI 43
|
|
| DEAD-like_helicase_C |
cd09300 |
C-terminal helicase domain of the DEAD-like helicases; This hierarchy of DEAD-like helicases ... |
546-587 |
2.42e-08 |
|
C-terminal helicase domain of the DEAD-like helicases; This hierarchy of DEAD-like helicases is composed of two superfamilies, SF1 and SF2, that share almost identical folds and extensive structural similarity in their catalytic core. Helicases are involved in ATP-dependent RNA or DNA unwinding. Two distinct types of helicases exist, those forming toroidal, predominantly hexameric structures, and those that do not. SF1 and SF2 helicases do not form toroidal structures, while SF3-6 helicases do. Their conserved helicase core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.
Pssm-ID: 350171 [Multi-domain] Cd Length: 59 Bit Score: 51.01 E-value: 2.42e-08
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 492122012 546 EIVKAAGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFY 587
Cdd:cd09300 17 TGFDAPELNTIIVDKNLRSYRGLNQAFGRANRIYTFGGIVTY 58
|
|
| PRK01617 |
PRK01617 |
hypothetical protein; Provisional |
871-890 |
1.31e-07 |
|
hypothetical protein; Provisional
Pssm-ID: 234966 Cd Length: 154 Bit Score: 51.96 E-value: 1.31e-07
|
| SWIM_PBPRA1643 |
TIGR04102 |
SWIM/SEC-C metal-binding motif protein, PBPRA1643 family; Members of this protein family have ... |
822-890 |
5.06e-07 |
|
SWIM/SEC-C metal-binding motif protein, PBPRA1643 family; Members of this protein family have a SWIM, or SEC-C, domain (see pfam02810), a 21-amino acid putative Zn-binding domain that is shared with SecA, plant MuDR transposases, etc. This small protein family of unknown function occurs primarily in marine bacteria.
Pssm-ID: 200353 [Multi-domain] Cd Length: 108 Bit Score: 48.84 E-value: 5.06e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492122012 822 VVTTLSRvqvrtQEEVEQAERQRQEMAKretasMQYNADEdsgEENTRRV----------------GRNEPCPCGSGKKY 885
Cdd:TIGR04102 37 VVQSEER-----KAEVEAILAEHELFAN-----IEVNADQ---EENIVELdgllnkpktttfektpNRNDPCPCGSGKKY 103
|
....*
gi 492122012 886 KHCHG 890
Cdd:TIGR04102 104 KKCCG 108
|
|
| PRK10396 |
PRK10396 |
hypothetical protein; Provisional |
865-888 |
4.23e-06 |
|
hypothetical protein; Provisional
Pssm-ID: 236680 [Multi-domain] Cd Length: 221 Bit Score: 48.59 E-value: 4.23e-06
10 20
....*....|....*....|....
gi 492122012 865 EENTRRVGRNEPCPCGSGKKYKHC 888
Cdd:PRK10396 195 IKAEEKVGRNDPCPCGSGKKFKQC 218
|
|
| PRK02250 |
PRK02250 |
hypothetical protein; Provisional |
868-890 |
1.85e-05 |
|
hypothetical protein; Provisional
Pssm-ID: 179393 [Multi-domain] Cd Length: 166 Bit Score: 46.02 E-value: 1.85e-05
|
| PRK12318 |
PRK12318 |
methionyl aminopeptidase; |
871-889 |
1.98e-04 |
|
methionyl aminopeptidase;
Pssm-ID: 183434 [Multi-domain] Cd Length: 291 Bit Score: 44.42 E-value: 1.98e-04
|
| PRK00183 |
PRK00183 |
hypothetical protein; Provisional |
870-891 |
2.08e-04 |
|
hypothetical protein; Provisional
Pssm-ID: 166842 Cd Length: 157 Bit Score: 42.48 E-value: 2.08e-04
|
| YchJ |
COG3012 |
Uncharacterized conserved protein YchJ, contains N- and C-terminal SEC-C domains [Function ... |
872-888 |
3.71e-03 |
|
Uncharacterized conserved protein YchJ, contains N- and C-terminal SEC-C domains [Function unknown];
Pssm-ID: 442249 Cd Length: 144 Bit Score: 38.67 E-value: 3.71e-03
|
| |
