|
Name |
Accession |
Description |
Interval |
E-value |
| trans_reg_C |
cd00383 |
DNA-binding effector domain of two-component system response regulators; Bacteria and some ... |
136-223 |
2.24e-35 |
|
DNA-binding effector domain of two-component system response regulators; Bacteria and some eukaryotes use two-component signal transduction systems to detect and respond to changes in the environment. The systems consists of a sensor histidine kinase and a response regulator. The former autophosphorylates a histidine residue on detecting an external stimulus. The phosphate is then transferred to an invariant aspartate residue in a highly conserved receiver domain of the response regulator. Phosphorylation activates a variable effector domain of the response regulator, which triggers the cellular response. This C-terminal effector domain belongs to the winged helix-turn-helix family of transcriptional regulators and contains DNA and RNA polymerase binding sites. Several dimers or monomers bind head to tail to small tandem repeats upstream of the genes. The RNA polymerase binding sites interact with the alpha or sigma subunit of RNA polymerase.
Pssm-ID: 294013 [Multi-domain] Cd Length: 89 Bit Score: 121.43 E-value: 2.24e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490329716 136 LVVDTNGYTANLRGVPIDLAYKEFELLKYLVQHPGRVFTRAQLLQEVWGYDYYGGTRTVDVHVRRLRAKLGGEYEH-LIG 214
Cdd:cd00383 1 LRLDPARREVTVDGEEVELTPKEFELLELLARNPGRVVSREELLEAVWGYDYEVDDRTVDVHISRLRKKLEDDPEPrLIK 80
|
....*....
gi 490329716 215 TVRNVGYRF 223
Cdd:cd00383 81 TVRGVGYRL 89
|
|
| PhoB |
TIGR02154 |
phosphate regulon transcriptional regulatory protein PhoB; PhoB is a DNA-binding response ... |
27-224 |
1.57e-33 |
|
phosphate regulon transcriptional regulatory protein PhoB; PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well. [Regulatory functions, DNA interactions, Signal transduction, Two-component systems]
Pssm-ID: 131209 [Multi-domain] Cd Length: 226 Bit Score: 120.90 E-value: 1.57e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490329716 27 DASSLVRMPENTILLLDARDDLASAKTLCRLLHASGLSTPI-VLILTEGGFTV--VNG-EWGVSDVIVNTASPAEVEGRL 102
Cdd:TIGR02154 37 EALTLINERGPDLILLDWMLPGTSGIELCRRLRRRPETRAIpIIMLTARGEEEdrVRGlETGADDYITKPFSPRELLARI 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490329716 103 RLVTERvatynvmpnalanSGPEDEDGLIRSGDLVVDTNGYTANLRGVPIDLAYKEFELLKYLVQHPGRVFTRAQLLQEV 182
Cdd:TIGR02154 117 KAVLRR-------------IRPQLSDEVIEVGDLSLDPVAHRVFRGGQPLSLGPTEFRLLHFFMTHPERVYSREQLLDRV 183
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 490329716 183 WGYDYYGGTRTVDVHVRRLRAKLGGE-YEHLIGTVRNVGYRFD 224
Cdd:TIGR02154 184 WGRDVYVEERTVDVHIRRLRKALNPFgLEDPVQTVRGAGYRFS 226
|
|
| Trans_reg_C |
pfam00486 |
Transcriptional regulatory protein, C terminal; |
149-223 |
4.62e-33 |
|
Transcriptional regulatory protein, C terminal;
Pssm-ID: 425712 [Multi-domain] Cd Length: 77 Bit Score: 114.92 E-value: 4.62e-33
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 490329716 149 GVPIDLAYKEFELLKYLVQHPGRVFTRAQLLQEVWGYDYYGGTRTVDVHVRRLRAKLG--GEYEHLIGTVRNVGYRF 223
Cdd:pfam00486 1 GEEVELTPKEFKLLELLAENPGRVVSREQLLEEVWGEDYDVDDNTVDVHISRLRKKLEddPRDPRLIKTVRGVGYRL 77
|
|
| Trans_reg_C |
smart00862 |
Transcriptional regulatory protein, C terminal; This domain is almost always found associated ... |
149-223 |
4.57e-32 |
|
Transcriptional regulatory protein, C terminal; This domain is almost always found associated with the response regulator receiver domain. It may play a role in DNA binding.
Pssm-ID: 214866 [Multi-domain] Cd Length: 76 Bit Score: 112.26 E-value: 4.57e-32
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 490329716 149 GVPIDLAYKEFELLKYLVQHPGRVFTRAQLLQEVWGYDYYGGTRTVDVHVRRLRAKLG-GEYEHLIGTVRNVGYRF 223
Cdd:smart00862 1 GEPIKLTPKEFRLLELLLRNPGRVVSREELLEAVWGDDEDVDDNTLDVHISRLRKKLEdDGDPRLIETVRGVGYRL 76
|
|
| OmpR |
COG0745 |
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain ... |
53-209 |
5.24e-30 |
|
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain [Signal transduction mechanisms, Transcription];
Pssm-ID: 440508 [Multi-domain] Cd Length: 204 Bit Score: 111.20 E-value: 5.24e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490329716 53 TLCRLLHASGLSTPIvLILTEGG--FTVVNG-EWGVSDVIVNTASPAEVEGRLRLVTERVATynvmpnalansgpededG 129
Cdd:COG0745 62 EVCRRLRARPSDIPI-IMLTARDdeEDRVRGlEAGADDYLTKPFDPEELLARIRALLRRRAA-----------------E 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490329716 130 LIRSGDLVvDTNGYTANLRGVPIDLAYKEFELLKYLVQHPGRVFTRAQLLQEVWGYDyYGGTRTVDVHVRRLRAKLGGEY 209
Cdd:COG0745 124 VLRVGDLL-DLAAREVTRDGEPVELTPKEFRLLELLMRNPGRVVSREQLLEEVWGYD-YGDDRTVDVHISRLRKKLEDDL 201
|
|
| resp_reg_YycF |
NF040534 |
response regulator YycF; |
125-227 |
5.87e-30 |
|
response regulator YycF;
Pssm-ID: 439744 [Multi-domain] Cd Length: 231 Bit Score: 111.74 E-value: 5.87e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490329716 125 EDEDGLIRSGDLVVDTNGYTANLRGVPIDLAYKEFELLKYLVQHPGRVFTRAQLLQEVWGYDYYGGTRTVDVHVRRLRAK 204
Cdd:NF040534 127 EEENNEIVIGSLTIHPDAYTVKKRGETIELTHREFELLHYLAKHIGQVMTREHLLQTVWGYDYFGDVRTVDVTVRRLREK 206
|
90 100
....*....|....*....|....*
gi 490329716 205 LGGEYEH--LIGTVRNVGYRFDPPE 227
Cdd:NF040534 207 IEDNPSHpeWIVTRRGVGYYLRNPE 231
|
|
| orf27 |
CHL00148 |
Ycf27; Reviewed |
82-223 |
8.44e-29 |
|
Ycf27; Reviewed
Pssm-ID: 214376 [Multi-domain] Cd Length: 240 Bit Score: 109.04 E-value: 8.44e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490329716 82 EWGVSDVIVNTASPAEVEGRLRLVTERVatynvmpNALANSGPEDEDGLIRSGDLVVDTNGYTANLRGVPIDLAYKEFEL 161
Cdd:CHL00148 97 ELGADDYVVKPFSPKELEARIRSVLRRT-------NKKSFSSKIPNSSIIRIGFLKIDLNKKQVYKNNERIRLTGMEFSL 169
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 490329716 162 LKYLVQHPGRVFTRAQLLQEVWGYDY--YGGTRTVDVHVRRLRAKLGGEYEH--LIGTVRNVGYRF 223
Cdd:CHL00148 170 LELLISKSGEIFSRATILKEVWGYTPerHIDTRVVDVHISRLRAKLEDDPSNpdLILTARGTGYLF 235
|
|
| MtrAB_MtrA |
NF040689 |
MtrAB system response regulator MtrA; |
55-222 |
6.85e-28 |
|
MtrAB system response regulator MtrA;
Pssm-ID: 468653 [Multi-domain] Cd Length: 219 Bit Score: 106.11 E-value: 6.85e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490329716 55 CRLLHASGlSTPIVLiLTEGGFT--VVNG-EWGVSDVIVNTASPAEVEGRLRLVTERVAtynvmpnalansgpEDEDGLI 131
Cdd:NF040689 61 CRQIRAES-GVPIIM-LTAKSDTvdVVRGlEAGADDYVVKPFKPKELVARIRARLRRSE--------------DEESEVL 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490329716 132 RSGDLVVDTNGYTANLRGVPIDLAYKEFELLKYLVQHPGRVFTRAQLLQEVWGYDYYGGTRTVDVHVRRLRAKLGGEYEH 211
Cdd:NF040689 125 RIGDLTIDVAGHEVTRGGEEIPLTPLEFDLLVALARKPGQVFSREELLEQVWGYRHAADTRLVNVHVQRLRAKIERDPEN 204
|
170
....*....|...
gi 490329716 212 --LIGTVRNVGYR 222
Cdd:NF040689 205 peIVVTVRGVGYK 217
|
|
| CadC1 |
COG3710 |
DNA-binding winged helix-turn-helix (wHTH) domain [Transcription]; |
131-231 |
1.80e-21 |
|
DNA-binding winged helix-turn-helix (wHTH) domain [Transcription];
Pssm-ID: 442924 [Multi-domain] Cd Length: 106 Bit Score: 85.73 E-value: 1.80e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490329716 131 IRSGDLVVDTNGYTANLRGVPIDLAYKEFELLKYLVQHPGRVFTRAQLLQEVWGyDYYGGTRTVDVHVRRLRAKLG--GE 208
Cdd:COG3710 3 YRFGDFRLDPARRELLRDGEPVRLSPRAFDLLLLLLEHPGRVVSRDELLAAVWP-GRVVSDNSLTQAISRLRKALGddGL 81
|
90 100
....*....|....*....|...
gi 490329716 209 YEHLIGTVRNVGYRFDPPEEESA 231
Cdd:COG3710 82 EPRLIRTVPRRGYRLVAPVEVEA 104
|
|
| PRK09836 |
PRK09836 |
DNA-binding transcriptional activator CusR; Provisional |
54-229 |
3.00e-19 |
|
DNA-binding transcriptional activator CusR; Provisional
Pssm-ID: 182102 [Multi-domain] Cd Length: 227 Bit Score: 83.44 E-value: 3.00e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490329716 54 LCRLLHASGLSTPIVLILTEGGFT--VVNGEWGVSDVIVNTASPAEVEGRLRLVTERVATynVMPnalansgpedeDGLI 131
Cdd:PRK09836 62 IVRMLRSANKGMPILLLTALGTIEhrVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA--VII-----------ESQF 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490329716 132 RSGDLVVDTNGYTANLRGVPIDLAYKEFELLKYLVQHPGRVFTRAQLLQEVWGYDYYGGTRTVDVHVRRLRAKLGGEYE- 210
Cdd:PRK09836 129 QVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWDMNFDSDTNAIDVAVKRLRGKIDNDFEp 208
|
170
....*....|....*....
gi 490329716 211 HLIGTVRNVGYRFDPPEEE 229
Cdd:PRK09836 209 KLIQTVRGVGYMLEVPDGQ 227
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| trans_reg_C |
cd00383 |
DNA-binding effector domain of two-component system response regulators; Bacteria and some ... |
136-223 |
2.24e-35 |
|
DNA-binding effector domain of two-component system response regulators; Bacteria and some eukaryotes use two-component signal transduction systems to detect and respond to changes in the environment. The systems consists of a sensor histidine kinase and a response regulator. The former autophosphorylates a histidine residue on detecting an external stimulus. The phosphate is then transferred to an invariant aspartate residue in a highly conserved receiver domain of the response regulator. Phosphorylation activates a variable effector domain of the response regulator, which triggers the cellular response. This C-terminal effector domain belongs to the winged helix-turn-helix family of transcriptional regulators and contains DNA and RNA polymerase binding sites. Several dimers or monomers bind head to tail to small tandem repeats upstream of the genes. The RNA polymerase binding sites interact with the alpha or sigma subunit of RNA polymerase.
Pssm-ID: 294013 [Multi-domain] Cd Length: 89 Bit Score: 121.43 E-value: 2.24e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490329716 136 LVVDTNGYTANLRGVPIDLAYKEFELLKYLVQHPGRVFTRAQLLQEVWGYDYYGGTRTVDVHVRRLRAKLGGEYEH-LIG 214
Cdd:cd00383 1 LRLDPARREVTVDGEEVELTPKEFELLELLARNPGRVVSREELLEAVWGYDYEVDDRTVDVHISRLRKKLEDDPEPrLIK 80
|
....*....
gi 490329716 215 TVRNVGYRF 223
Cdd:cd00383 81 TVRGVGYRL 89
|
|
| PhoB |
TIGR02154 |
phosphate regulon transcriptional regulatory protein PhoB; PhoB is a DNA-binding response ... |
27-224 |
1.57e-33 |
|
phosphate regulon transcriptional regulatory protein PhoB; PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well. [Regulatory functions, DNA interactions, Signal transduction, Two-component systems]
Pssm-ID: 131209 [Multi-domain] Cd Length: 226 Bit Score: 120.90 E-value: 1.57e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490329716 27 DASSLVRMPENTILLLDARDDLASAKTLCRLLHASGLSTPI-VLILTEGGFTV--VNG-EWGVSDVIVNTASPAEVEGRL 102
Cdd:TIGR02154 37 EALTLINERGPDLILLDWMLPGTSGIELCRRLRRRPETRAIpIIMLTARGEEEdrVRGlETGADDYITKPFSPRELLARI 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490329716 103 RLVTERvatynvmpnalanSGPEDEDGLIRSGDLVVDTNGYTANLRGVPIDLAYKEFELLKYLVQHPGRVFTRAQLLQEV 182
Cdd:TIGR02154 117 KAVLRR-------------IRPQLSDEVIEVGDLSLDPVAHRVFRGGQPLSLGPTEFRLLHFFMTHPERVYSREQLLDRV 183
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 490329716 183 WGYDYYGGTRTVDVHVRRLRAKLGGE-YEHLIGTVRNVGYRFD 224
Cdd:TIGR02154 184 WGRDVYVEERTVDVHIRRLRKALNPFgLEDPVQTVRGAGYRFS 226
|
|
| Trans_reg_C |
pfam00486 |
Transcriptional regulatory protein, C terminal; |
149-223 |
4.62e-33 |
|
Transcriptional regulatory protein, C terminal;
Pssm-ID: 425712 [Multi-domain] Cd Length: 77 Bit Score: 114.92 E-value: 4.62e-33
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 490329716 149 GVPIDLAYKEFELLKYLVQHPGRVFTRAQLLQEVWGYDYYGGTRTVDVHVRRLRAKLG--GEYEHLIGTVRNVGYRF 223
Cdd:pfam00486 1 GEEVELTPKEFKLLELLAENPGRVVSREQLLEEVWGEDYDVDDNTVDVHISRLRKKLEddPRDPRLIKTVRGVGYRL 77
|
|
| Trans_reg_C |
smart00862 |
Transcriptional regulatory protein, C terminal; This domain is almost always found associated ... |
149-223 |
4.57e-32 |
|
Transcriptional regulatory protein, C terminal; This domain is almost always found associated with the response regulator receiver domain. It may play a role in DNA binding.
Pssm-ID: 214866 [Multi-domain] Cd Length: 76 Bit Score: 112.26 E-value: 4.57e-32
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 490329716 149 GVPIDLAYKEFELLKYLVQHPGRVFTRAQLLQEVWGYDYYGGTRTVDVHVRRLRAKLG-GEYEHLIGTVRNVGYRF 223
Cdd:smart00862 1 GEPIKLTPKEFRLLELLLRNPGRVVSREELLEAVWGDDEDVDDNTLDVHISRLRKKLEdDGDPRLIETVRGVGYRL 76
|
|
| OmpR |
COG0745 |
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain ... |
53-209 |
5.24e-30 |
|
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain [Signal transduction mechanisms, Transcription];
Pssm-ID: 440508 [Multi-domain] Cd Length: 204 Bit Score: 111.20 E-value: 5.24e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490329716 53 TLCRLLHASGLSTPIvLILTEGG--FTVVNG-EWGVSDVIVNTASPAEVEGRLRLVTERVATynvmpnalansgpededG 129
Cdd:COG0745 62 EVCRRLRARPSDIPI-IMLTARDdeEDRVRGlEAGADDYLTKPFDPEELLARIRALLRRRAA-----------------E 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490329716 130 LIRSGDLVvDTNGYTANLRGVPIDLAYKEFELLKYLVQHPGRVFTRAQLLQEVWGYDyYGGTRTVDVHVRRLRAKLGGEY 209
Cdd:COG0745 124 VLRVGDLL-DLAAREVTRDGEPVELTPKEFRLLELLMRNPGRVVSREQLLEEVWGYD-YGDDRTVDVHISRLRKKLEDDL 201
|
|
| resp_reg_YycF |
NF040534 |
response regulator YycF; |
125-227 |
5.87e-30 |
|
response regulator YycF;
Pssm-ID: 439744 [Multi-domain] Cd Length: 231 Bit Score: 111.74 E-value: 5.87e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490329716 125 EDEDGLIRSGDLVVDTNGYTANLRGVPIDLAYKEFELLKYLVQHPGRVFTRAQLLQEVWGYDYYGGTRTVDVHVRRLRAK 204
Cdd:NF040534 127 EEENNEIVIGSLTIHPDAYTVKKRGETIELTHREFELLHYLAKHIGQVMTREHLLQTVWGYDYFGDVRTVDVTVRRLREK 206
|
90 100
....*....|....*....|....*
gi 490329716 205 LGGEYEH--LIGTVRNVGYRFDPPE 227
Cdd:NF040534 207 IEDNPSHpeWIVTRRGVGYYLRNPE 231
|
|
| orf27 |
CHL00148 |
Ycf27; Reviewed |
82-223 |
8.44e-29 |
|
Ycf27; Reviewed
Pssm-ID: 214376 [Multi-domain] Cd Length: 240 Bit Score: 109.04 E-value: 8.44e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490329716 82 EWGVSDVIVNTASPAEVEGRLRLVTERVatynvmpNALANSGPEDEDGLIRSGDLVVDTNGYTANLRGVPIDLAYKEFEL 161
Cdd:CHL00148 97 ELGADDYVVKPFSPKELEARIRSVLRRT-------NKKSFSSKIPNSSIIRIGFLKIDLNKKQVYKNNERIRLTGMEFSL 169
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 490329716 162 LKYLVQHPGRVFTRAQLLQEVWGYDY--YGGTRTVDVHVRRLRAKLGGEYEH--LIGTVRNVGYRF 223
Cdd:CHL00148 170 LELLISKSGEIFSRATILKEVWGYTPerHIDTRVVDVHISRLRAKLEDDPSNpdLILTARGTGYLF 235
|
|
| MtrAB_MtrA |
NF040689 |
MtrAB system response regulator MtrA; |
55-222 |
6.85e-28 |
|
MtrAB system response regulator MtrA;
Pssm-ID: 468653 [Multi-domain] Cd Length: 219 Bit Score: 106.11 E-value: 6.85e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490329716 55 CRLLHASGlSTPIVLiLTEGGFT--VVNG-EWGVSDVIVNTASPAEVEGRLRLVTERVAtynvmpnalansgpEDEDGLI 131
Cdd:NF040689 61 CRQIRAES-GVPIIM-LTAKSDTvdVVRGlEAGADDYVVKPFKPKELVARIRARLRRSE--------------DEESEVL 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490329716 132 RSGDLVVDTNGYTANLRGVPIDLAYKEFELLKYLVQHPGRVFTRAQLLQEVWGYDYYGGTRTVDVHVRRLRAKLGGEYEH 211
Cdd:NF040689 125 RIGDLTIDVAGHEVTRGGEEIPLTPLEFDLLVALARKPGQVFSREELLEQVWGYRHAADTRLVNVHVQRLRAKIERDPEN 204
|
170
....*....|...
gi 490329716 212 --LIGTVRNVGYR 222
Cdd:NF040689 205 peIVVTVRGVGYK 217
|
|
| PRK11083 |
PRK11083 |
DNA-binding response regulator CreB; Provisional |
54-225 |
1.44e-22 |
|
DNA-binding response regulator CreB; Provisional
Pssm-ID: 236838 [Multi-domain] Cd Length: 228 Bit Score: 91.95 E-value: 1.44e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490329716 54 LCRLLHASGLSTPiVLILT---EGGFTVVNGEWGVSDVIVNTASPAEVEGRLRLVTERVAtynvmPNALANSGPededgl 130
Cdd:PRK11083 65 LCRQLLAFHPALP-VIFLTarsDEVDRLVGLEIGADDYVAKPFSPREVAARVRTILRRVK-----KFAAPSPVI------ 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490329716 131 iRSGDLVVDTNGYTANLRGVPIDLAYKEFELLKYLVQHPGRVFTRAQLLQEVWGYDYYGGTRTVDVHVRRLRAKLGGEYE 210
Cdd:PRK11083 133 -RIGHFELDEPAARISYFGTPLTLTRYEFLLLKTLLLSPGRVFSRQQLMDIVWEDAQDSYDRTVDTHIKTLRAKLRAINP 211
|
170
....*....|....*..
gi 490329716 211 HL--IGTVRNVGYRFDP 225
Cdd:PRK11083 212 DLspINTHRGMGYSLRP 228
|
|
| CadC1 |
COG3710 |
DNA-binding winged helix-turn-helix (wHTH) domain [Transcription]; |
131-231 |
1.80e-21 |
|
DNA-binding winged helix-turn-helix (wHTH) domain [Transcription];
Pssm-ID: 442924 [Multi-domain] Cd Length: 106 Bit Score: 85.73 E-value: 1.80e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490329716 131 IRSGDLVVDTNGYTANLRGVPIDLAYKEFELLKYLVQHPGRVFTRAQLLQEVWGyDYYGGTRTVDVHVRRLRAKLG--GE 208
Cdd:COG3710 3 YRFGDFRLDPARRELLRDGEPVRLSPRAFDLLLLLLEHPGRVVSRDELLAAVWP-GRVVSDNSLTQAISRLRKALGddGL 81
|
90 100
....*....|....*....|...
gi 490329716 209 YEHLIGTVRNVGYRFDPPEEESA 231
Cdd:COG3710 82 EPRLIRTVPRRGYRLVAPVEVEA 104
|
|
| PRK10161 |
PRK10161 |
phosphate response regulator transcription factor PhoB; |
66-223 |
1.45e-20 |
|
phosphate response regulator transcription factor PhoB;
Pssm-ID: 182277 [Multi-domain] Cd Length: 229 Bit Score: 87.08 E-value: 1.45e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490329716 66 PIVLILTEGGFT--VVNGEWGVSDVIVNTASPAEVEGRLRLVTERVAtynvmpnalansgPEDEDGLIRSGDLVVDTNGY 143
Cdd:PRK10161 78 PVVMLTARGEEEdrVRGLETGADDYITKPFSPKELVARIKAVMRRIS-------------PMAVEEVIEMQGLSLDPTSH 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490329716 144 TANLRGVPIDLAYKEFELLKYLVQHPGRVFTRAQLLQEVWGYDYYGGTRTVDVHVRRLRAKLGGE-YEHLIGTVRNVGYR 222
Cdd:PRK10161 145 RVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGgHDRMVQTVRGTGYR 224
|
.
gi 490329716 223 F 223
Cdd:PRK10161 225 F 225
|
|
| PRK09836 |
PRK09836 |
DNA-binding transcriptional activator CusR; Provisional |
54-229 |
3.00e-19 |
|
DNA-binding transcriptional activator CusR; Provisional
Pssm-ID: 182102 [Multi-domain] Cd Length: 227 Bit Score: 83.44 E-value: 3.00e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490329716 54 LCRLLHASGLSTPIVLILTEGGFT--VVNGEWGVSDVIVNTASPAEVEGRLRLVTERVATynVMPnalansgpedeDGLI 131
Cdd:PRK09836 62 IVRMLRSANKGMPILLLTALGTIEhrVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA--VII-----------ESQF 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490329716 132 RSGDLVVDTNGYTANLRGVPIDLAYKEFELLKYLVQHPGRVFTRAQLLQEVWGYDYYGGTRTVDVHVRRLRAKLGGEYE- 210
Cdd:PRK09836 129 QVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWDMNFDSDTNAIDVAVKRLRGKIDNDFEp 208
|
170
....*....|....*....
gi 490329716 211 HLIGTVRNVGYRFDPPEEE 229
Cdd:PRK09836 209 KLIQTVRGVGYMLEVPDGQ 227
|
|
| PRK10710 |
PRK10710 |
DNA-binding transcriptional regulator BaeR; Provisional |
40-224 |
1.58e-18 |
|
DNA-binding transcriptional regulator BaeR; Provisional
Pssm-ID: 182665 [Multi-domain] Cd Length: 240 Bit Score: 81.66 E-value: 1.58e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490329716 40 LLLDARDDLasakTLCRLLHasGLS-TPIVLIL--TEGGFTVVNGEWGVSDVIVNTASPAEVEGRLRLVTERVatynvmp 116
Cdd:PRK10710 62 LMLPGTDGL----TLCREIR--RFSdIPIVMVTakIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC------- 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490329716 117 nalanSGPEDEDGLIRSGDLVVDTNGYTANLRGVPIDLAYKEFELLKYLVQHPGRVFTRAQLLQEVwgYDYYG--GTRTV 194
Cdd:PRK10710 129 -----KPQRELQQQDAESPLIIDESRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHL--YDDYRvvTDRTI 201
|
170 180 190
....*....|....*....|....*....|..
gi 490329716 195 DVHVRRLRAKLGG--EYEHLIGTVRNVGYRFD 224
Cdd:PRK10710 202 DSHIKNLRRKLESldAEQSFIRAVYGVGYRWE 233
|
|
| PRK10701 |
PRK10701 |
DNA-binding transcriptional regulator RstA; Provisional |
53-225 |
3.62e-17 |
|
DNA-binding transcriptional regulator RstA; Provisional
Pssm-ID: 236738 [Multi-domain] Cd Length: 240 Bit Score: 77.75 E-value: 3.62e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490329716 53 TLCRLLHASgLSTPIVLI--LTEGGFTVVNGEWGVSDVIVNTASPAEVEGRLRLVTeRVATYNVMPNALANSGPEDEDGL 130
Cdd:PRK10701 62 TICRDLRPK-WQGPIVLLtsLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHL-RQNEQATQTKGLQETSLTPYKAL 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490329716 131 iRSGDLVVDTNGYTANLRGVPIDLAYKEFELLKYLVQHPGRVFTRAQLLQEVWGYDYYGGTRTVDVHVRRLRAKLG--GE 208
Cdd:PRK10701 140 -HFGTLTIDPVNRQVTLAGEEISLSTADFDLLWELATHAGQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLdnAA 218
|
170
....*....|....*..
gi 490329716 209 YEHLIGTVRNVGYRFDP 225
Cdd:PRK10701 219 EPYRIKTVRNKGYLFAP 235
|
|
| PRK11517 |
PRK11517 |
DNA-binding response regulator HprR; |
135-228 |
9.59e-16 |
|
DNA-binding response regulator HprR;
Pssm-ID: 183172 [Multi-domain] Cd Length: 223 Bit Score: 73.78 E-value: 9.59e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490329716 135 DLVVDTNGYTANLRGVPIDLAYKEFELLKYLVQHPGRVFTRAQLLQEVWGYDYYGGTRTVDVHVRRLRAKLGGEYE-HLI 213
Cdd:PRK11517 129 GLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGINFDSDTNTVDVAIRRLRAKVDDPFPeKLI 208
|
90
....*....|....*
gi 490329716 214 GTVRNVGYRFDPPEE 228
Cdd:PRK11517 209 ATIRGMGYSFVAVKK 223
|
|
| ompR |
PRK09468 |
osmolarity response regulator; Provisional |
40-225 |
1.69e-12 |
|
osmolarity response regulator; Provisional
Pssm-ID: 181883 [Multi-domain] Cd Length: 239 Bit Score: 65.00 E-value: 1.69e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490329716 40 LLLDARDDLasakTLCRLLHASGLSTPIVLiLTEGGFTV---VNGEWGVSDVIVNTASPAEVEGRLRLVTERVATynVMP 116
Cdd:PRK09468 57 LMLPGEDGL----SICRRLRSQNNPTPIIM-LTAKGEEVdriVGLEIGADDYLPKPFNPRELLARIRAVLRRQAP--ELP 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490329716 117 NAlansgPEDEDGLIRSGDLVVDTNGYTANLRGVPIDLAYKEFELLKYLVQHPGRVFTRAQLLQEVWGYDYYGGTRTVDV 196
Cdd:PRK09468 130 GA-----PSQEEEVIAFGKFKLNLGTRELFRGDEPMPLTTGEFAVLKALVSHPREPLSRDKLMNLARGREYSAMERSIDV 204
|
170 180 190
....*....|....*....|....*....|.
gi 490329716 197 HVRRLRAKLGGEYEH--LIGTVRNVGYRFDP 225
Cdd:PRK09468 205 QISRLRRLIEEDPAHprYIQTVWGLGYVFVP 235
|
|
| PRK10643 |
PRK10643 |
two-component system response regulator PmrA; |
128-229 |
3.00e-12 |
|
two-component system response regulator PmrA;
Pssm-ID: 182612 [Multi-domain] Cd Length: 222 Bit Score: 63.90 E-value: 3.00e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490329716 128 DGLIRSGDLVVDTNGYTANLRGVPIDLAYKEFELLKYLVQHPGRVFTRAQLLQEVWGYDYYGGTRTVDVHVRRLRAKLGG 207
Cdd:PRK10643 124 ENELQVGNLTLNLGRQQVWLDGQELILTPKEFALLSRLMLKAGSPVHREILYQDIYNWDDEPSSNTLEVHIHNLRDKVGK 203
|
90 100
....*....|....*....|..
gi 490329716 208 EYehlIGTVRNVGYRFDPPEEE 229
Cdd:PRK10643 204 DR---IRTVRGFGYMLVANEEN 222
|
|
| PRK10336 |
PRK10336 |
two-component system response regulator QseB; |
131-221 |
1.66e-11 |
|
two-component system response regulator QseB;
Pssm-ID: 182387 [Multi-domain] Cd Length: 219 Bit Score: 61.83 E-value: 1.66e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490329716 131 IRSGDLVVDTNGYTANLRGVPIDLAYKEFELLKYLVQHPGRVFTRAQLLQEVWGYDYYGGTRTVDVHVRRLRAKLGGEYe 210
Cdd:PRK10336 127 LRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYTWDEEVTSNAVEVHVHHLRRKLGSDF- 205
|
90
....*....|.
gi 490329716 211 hlIGTVRNVGY 221
Cdd:PRK10336 206 --IRTVHGIGY 214
|
|
| PRK10766 |
PRK10766 |
two-component system response regulator TorR; |
125-205 |
2.53e-10 |
|
two-component system response regulator TorR;
Pssm-ID: 182711 [Multi-domain] Cd Length: 221 Bit Score: 58.51 E-value: 2.53e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490329716 125 EDEDGLIRSGDLVVDTNGYTANLRGVPIDLAYKEFELLKYLVQHPGRVFTRAQLLQEVWGYDYYGGTRTVDVHVRRLRAK 204
Cdd:PRK10766 131 QEEDNCYRFAGYCLNVSRRTLERNGEPIKLTKAEYELLVAFVTNPGQVLSRERLLRMLSHRVENPNDRTIDVLIRRLRHK 210
|
.
gi 490329716 205 L 205
Cdd:PRK10766 211 L 211
|
|
| PRK10529 |
PRK10529 |
DNA-binding transcriptional activator KdpE; Provisional |
97-225 |
9.02e-10 |
|
DNA-binding transcriptional activator KdpE; Provisional
Pssm-ID: 182522 [Multi-domain] Cd Length: 225 Bit Score: 57.12 E-value: 9.02e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490329716 97 EVEGRLRLVTERvatynvmpnalaNSGPEDEDGLIRSGDLVVDTNGYTANLRGVPIDLAYKEFELLKYLVQHPGRVFTRA 176
Cdd:PRK10529 107 ELQARLRVALRR------------HSATPAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQR 174
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 490329716 177 QLLQEVWGYDYYGGTRTVDVHVRRLRAKLGGE---YEHLIgTVRNVGYRFDP 225
Cdd:PRK10529 175 QLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDparPRHFI-TETGIGYRFMP 225
|
|
| PRK11173 |
PRK11173 |
two-component response regulator; Provisional |
82-223 |
3.16e-09 |
|
two-component response regulator; Provisional
Pssm-ID: 183013 [Multi-domain] Cd Length: 237 Bit Score: 55.79 E-value: 3.16e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490329716 82 EWGVSDVIVNTASPAEVEGRLRlvtervatyNVMPNALANSGPEDEDGLIRSgdlvVDTNGYT--ANLR------GVPID 153
Cdd:PRK11173 94 EIGADDYITKPFNPRELTIRAR---------NLLSRTMNLGTVSEERRSVES----YKFNGWEldINSRslispdGEQYK 160
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 490329716 154 LAYKEFELLKYLVQHPGRVFTRAQLLQEVWGYDYYGGTRTVDVHVRRLRA--KLGGEYEHLIGTVRNVGYRF 223
Cdd:PRK11173 161 LPRSEFRAMLHFCENPGKIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKhfESTPDTPEIIATIHGEGYRF 232
|
|
| PRK10955 |
PRK10955 |
envelope stress response regulator transcription factor CpxR; |
65-221 |
1.02e-07 |
|
envelope stress response regulator transcription factor CpxR;
Pssm-ID: 182864 [Multi-domain] Cd Length: 232 Bit Score: 51.34 E-value: 1.02e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490329716 65 TPIVLILTEGGF--TVVNGEWGVSDVIVNTASPAEVEGRLRLVTERVATYNVMPNALANSGPEDEDGLirsgdlVVDTNG 142
Cdd:PRK10955 72 TPVIMLTARGSEldRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSEQQQNNDNGSPTLEVDAL------SLNPGR 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490329716 143 YTANLRGVPIDLAYKEFELLKYLVQHPGRVFTRAQLLQEVWGYDYYGGTRTVDVHVRRLRAKLGGEYEHL--IGTVRNVG 220
Cdd:PRK10955 146 QEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHpwFKTLRGRG 225
|
.
gi 490329716 221 Y 221
Cdd:PRK10955 226 Y 226
|
|
| DnrI |
COG3629 |
DNA-binding transcriptional regulator DnrI/AfsR/EmbR, SARP family, contains BTAD domain ... |
149-229 |
3.49e-05 |
|
DNA-binding transcriptional regulator DnrI/AfsR/EmbR, SARP family, contains BTAD domain [Transcription];
Pssm-ID: 442847 [Multi-domain] Cd Length: 244 Bit Score: 43.68 E-value: 3.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490329716 149 GVPIDLAY-KEFELLKYLVQHPGRVFTRAQLLQEVWGYDYYGGTR-TVDVHVRRLRAKLGGEYEHLIGTVRNvGYRFDPP 226
Cdd:COG3629 16 GRPVPLGGpKQRALLAYLALRAGRPVSRDRLADLLWGDDPPASARaNLRTYVSRLRRALGPAGGDLLVTRGG-GYRLDVD 94
|
...
gi 490329716 227 EEE 229
Cdd:COG3629 95 PDE 97
|
|
| PRK10816 |
PRK10816 |
two-component system response regulator PhoP; |
149-224 |
4.29e-05 |
|
two-component system response regulator PhoP;
Pssm-ID: 182755 [Multi-domain] Cd Length: 223 Bit Score: 43.19 E-value: 4.29e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 490329716 149 GVPIDLAYKEFELLKYLVQHPGRVFTRAQLLQEVWGYDYYGGTRTVDVHVRRLRAKLGGEYEH-LIGTVRNVGYRFD 224
Cdd:PRK10816 145 DEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPDAELRESHTIDVLMGRLRKKIQAQYPQeVITTVRGQGYRFD 221
|
|
| PRK13856 |
PRK13856 |
two-component response regulator VirG; Provisional |
142-224 |
6.96e-05 |
|
two-component response regulator VirG; Provisional
Pssm-ID: 172377 [Multi-domain] Cd Length: 241 Bit Score: 42.88 E-value: 6.96e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490329716 142 GYTANLR--------GVPIDLAYKEFELLKYLVQHPGRVFTRAQLL--QEVWGYDYYggTRTVDVHVRRLRAKLGGE--Y 209
Cdd:PRK13856 136 DWTLNLRqrrliseaGGEVKLTAGEFNLLVAFLEKPRDVLSREQLLiaSRVREEEVY--DRSIDVLILRLRRKLEQDpaN 213
|
90
....*....|....*
gi 490329716 210 EHLIGTVRNVGYRFD 224
Cdd:PRK13856 214 PQLIKTARGAGYFFD 228
|
|
| PRK07239 |
PRK07239 |
bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated |
131-222 |
4.93e-04 |
|
bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated
Pssm-ID: 235981 [Multi-domain] Cd Length: 381 Bit Score: 40.73 E-value: 4.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490329716 131 IRSGDLVVDtngytanlrGVPIDLAYKEFELLKYLVQHPGRVFTRAQLLQEVWGydyyGG--TRTVDVHVRRLRAKLGGe 208
Cdd:PRK07239 293 IRGHAVVVD---------GEVKPLSPAPMALLRALAARPGRVVSREDLLAALPG----GGtdEHAVETAVARLRTALGD- 358
|
90
....*....|....
gi 490329716 209 yEHLIGTVRNVGYR 222
Cdd:PRK07239 359 -PKLVQTVVKRGYR 371
|
|
| PRK10153 |
PRK10153 |
DNA-binding transcriptional activator CadC; Provisional |
161-183 |
3.51e-03 |
|
DNA-binding transcriptional activator CadC; Provisional
Pssm-ID: 236658 [Multi-domain] Cd Length: 517 Bit Score: 38.10 E-value: 3.51e-03
|
|