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Conserved domains on  [gi|490071463|ref|WP_003973638|]
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MULTISPECIES: 50S ribosomal protein L31 [Streptomyces]

Protein Classification

50S ribosomal protein L31( domain architecture ID 10011073)

50S ribosomal protein L31 binds the 23S rRNA in a Zn(II)-dependent manner

Gene Symbol:  rpmE
Gene Ontology:  GO:0006412|GO:0003735|GO:0046872|GO:0019843
PubMed:  24524803

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
rpmE PRK00019
50S ribosomal protein L31; Reviewed
 1-70 1.70e-42

50S ribosomal protein L31; Reviewed


:

Pssm-ID: 234576  Cd Length: 72  Bit Score: 131.97  E-value: 1.70e-42
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490071463  1 MKRDIHPEYVETQVSCTCGASFTTRSTIESGTIRAEVCSECHPFYTGKQKILDTGGRVARFEARFGKASA 70
Cdd:PRK00019  1 MKKDIHPKYEEVTVTCSCGNVFETRSTLGKDEINVDVCSKCHPFYTGKQKIVDTGGRVERFNKRFGKKGK 70
 
Name Accession Description Interval E-value
rpmE PRK00019
50S ribosomal protein L31; Reviewed
 1-70 1.70e-42

50S ribosomal protein L31; Reviewed


Pssm-ID: 234576  Cd Length: 72  Bit Score: 131.97  E-value: 1.70e-42
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490071463  1 MKRDIHPEYVETQVSCTCGASFTTRSTIESGTIRAEVCSECHPFYTGKQKILDTGGRVARFEARFGKASA 70
Cdd:PRK00019  1 MKKDIHPKYEEVTVTCSCGNVFETRSTLGKDEINVDVCSKCHPFYTGKQKIVDTGGRVERFNKRFGKKGK 70
RpmE COG0254
Ribosomal protein L31 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L31 ...
 1-72 1.13e-40

Ribosomal protein L31 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L31 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440024  Cd Length: 72  Bit Score: 127.57  E-value: 1.13e-40
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 490071463  1 MKRDIHPEYVETQVSCTCGASFTTRSTIESGTIRAEVCSECHPFYTGKQKILDTGGRVARFEARFGKASAGS 72
Cdd:COG0254   1 MKKGIHPEYREVVVTCSCGNEFLTRSTLEYPEIKVDVCSACHPFYTGKQKIVDTAGRVEKFNKRYGKFGKKK 72
L31 TIGR00105
ribosomal protein L31; This family consists exclusively of bacterial (and organellar) 50S ...
 1-67 2.21e-36

ribosomal protein L31; This family consists exclusively of bacterial (and organellar) 50S ribosomal protein L31. In some species, such as Bacillus subtilis, this protein exists in two forms (RpmE and YtiA), one of which (RpmE) contains a pair of motifs, CXC and CXXC, for binding zinc. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 272907  Cd Length: 68  Bit Score: 116.62  E-value: 2.21e-36
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 490071463   1 MKRDIHPEYVETQVSCTCGASFTTRSTIESGTIRAEVCSECHPFYTGKQKILDTGGRVARFEARFGK 67
Cdd:TIGR00105  1 MKKDIHPDYHEITVTCTCGNVFTTRSTWGKETLNLDICSKCHPFYTGKQKIVDTGGRVDKFNKKFGG 67
Ribosomal_L31 pfam01197
Ribosomal protein L31;
1-66 9.44e-36

Ribosomal protein L31;


Pssm-ID: 460107  Cd Length: 65  Bit Score: 114.82  E-value: 9.44e-36
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 490071463   1 MKRDIHPEYVETQVSCTCGASFTTRSTiESGTIRAEVCSECHPFYTGKQKILDTGGRVARFEARFG 66
Cdd:pfam01197  1 MKKGIHPEYREVTVTCTCGNTFLTRST-EYPEIKVDVCSACHPFYTGKQKLVDTAGRVEKFNKRYG 65
 
Name Accession Description Interval E-value
rpmE PRK00019
50S ribosomal protein L31; Reviewed
 1-70 1.70e-42

50S ribosomal protein L31; Reviewed


Pssm-ID: 234576  Cd Length: 72  Bit Score: 131.97  E-value: 1.70e-42
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490071463  1 MKRDIHPEYVETQVSCTCGASFTTRSTIESGTIRAEVCSECHPFYTGKQKILDTGGRVARFEARFGKASA 70
Cdd:PRK00019  1 MKKDIHPKYEEVTVTCSCGNVFETRSTLGKDEINVDVCSKCHPFYTGKQKIVDTGGRVERFNKRFGKKGK 70
RpmE COG0254
Ribosomal protein L31 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L31 ...
 1-72 1.13e-40

Ribosomal protein L31 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L31 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440024  Cd Length: 72  Bit Score: 127.57  E-value: 1.13e-40
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 490071463  1 MKRDIHPEYVETQVSCTCGASFTTRSTIESGTIRAEVCSECHPFYTGKQKILDTGGRVARFEARFGKASAGS 72
Cdd:COG0254   1 MKKGIHPEYREVVVTCSCGNEFLTRSTLEYPEIKVDVCSACHPFYTGKQKIVDTAGRVEKFNKRYGKFGKKK 72
L31 TIGR00105
ribosomal protein L31; This family consists exclusively of bacterial (and organellar) 50S ...
 1-67 2.21e-36

ribosomal protein L31; This family consists exclusively of bacterial (and organellar) 50S ribosomal protein L31. In some species, such as Bacillus subtilis, this protein exists in two forms (RpmE and YtiA), one of which (RpmE) contains a pair of motifs, CXC and CXXC, for binding zinc. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 272907  Cd Length: 68  Bit Score: 116.62  E-value: 2.21e-36
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 490071463   1 MKRDIHPEYVETQVSCTCGASFTTRSTIESGTIRAEVCSECHPFYTGKQKILDTGGRVARFEARFGK 67
Cdd:TIGR00105  1 MKKDIHPDYHEITVTCTCGNVFTTRSTWGKETLNLDICSKCHPFYTGKQKIVDTGGRVDKFNKKFGG 67
Ribosomal_L31 pfam01197
Ribosomal protein L31;
1-66 9.44e-36

Ribosomal protein L31;


Pssm-ID: 460107  Cd Length: 65  Bit Score: 114.82  E-value: 9.44e-36
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 490071463   1 MKRDIHPEYVETQVSCTCGASFTTRSTiESGTIRAEVCSECHPFYTGKQKILDTGGRVARFEARFG 66
Cdd:pfam01197  1 MKKGIHPEYREVTVTCTCGNTFLTRST-EYPEIKVDVCSACHPFYTGKQKLVDTAGRVEKFNKRYG 65
rpmE2 PRK01678
type B 50S ribosomal protein L31;
1-74 6.08e-24

type B 50S ribosomal protein L31;


Pssm-ID: 234969  Cd Length: 87  Bit Score: 85.71  E-value: 6.08e-24
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490071463  1 MKRDIHPEYveTQV---SCTCGASFTTRSTIESGT------------IRAEVCSECHPFYTGKQKILDTGGRVARFEARF 65
Cdd:PRK01678  1 MKKGIHPEY--RPVvfhDTSTGFKFLTGSTITTDEtiewedgktyplVKVEISSASHPFYTGKQKFVDTEGRVEKFNKRF 78


                ....*....
gi 490071463 66 GKASAGSKK 74
Cdd:PRK01678 79 GRFASKKKK 87
rpmE PRK00528
50S ribosomal protein L31; Reviewed
 1-66 2.13e-23

50S ribosomal protein L31; Reviewed


Pssm-ID: 179057  Cd Length: 71  Bit Score: 83.85  E-value: 2.13e-23
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 490071463  1 MKRDIHPEYVETQVSCTCGASFTTRSTI--ESGTIRAEVCSECHPFYT-GKQKILDTGGRVARFEARFG 66
Cdd:PRK00528  1 MKKDIHPDYHPIKVVMTDGTEYETRSTWgkTGPELRLDIDSGNHPAWTgGTQKLLDTGGRVAKFNKKFG 69
rpl31 CHL00136
ribosomal protein L31; Validated
 1-66 1.04e-14

ribosomal protein L31; Validated


Pssm-ID: 177058  Cd Length: 68  Bit Score: 61.59  E-value: 1.04e-14
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 490071463  1 MKRDIHPE-YVETQVSCTCGASFTTRSTIESgtIRAEVCSECHPFYTGKQKILDTGGRVARFEARFG 66
Cdd:CHL00136  2 PKKNIHPQwFPETKVYCDGQLVMTVGSTKPE--LNVDIWSGNHPFYTGSQKIIDTEGRVERFMKKYG 66
PRK01397 PRK01397
50S ribosomal protein L31; Provisional
 1-74 1.79e-06

50S ribosomal protein L31; Provisional


Pssm-ID: 179294  Cd Length: 78  Bit Score: 41.09  E-value: 1.79e-06
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 490071463  1 MKRDIHPEYVETQVSCTcGASFTTRSTIESGTIRAEVCSECHPFYTGK-QKILDTGGR-VARFEARFGKASAGSKK 74
Cdd:PRK01397  1 MKSGIHPEYKKFLIKVG-SDVFETMSTHPTGEILMDVDFRKHPAWNKDsGNVVNQSNKsVSDFNKRFSGLSFGSKK 75
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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