NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|489994245|ref|WP_003897302|]
View 

MULTISPECIES: ferredoxin [Bacteria]

Protein Classification

ferredoxin( domain architecture ID 10003036)

ferredoxin is an iron-sulfur protein transferring electrons in a wide variety of metabolic reactions

CATH:  3.30.70.20
Gene Ontology:  GO:0051536|GO:0005506|GO:0009055
PubMed:  34698119|35941298
SCOP:  4001234

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Fer COG1141
Ferredoxin [Energy production and conversion];
1-63 9.33e-19

Ferredoxin [Energy production and conversion];


:

Pssm-ID: 440756 [Multi-domain]  Cd Length: 63  Bit Score: 71.45  E-value: 9.33e-19
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489994245  1 MRVEVDRDRCEGNAVCVGIAPDLFELDDEDYAVVKSDPVPADQEDLAEQAVNECPRAALIRKD 63
Cdd:COG1141   1 MKVTVDRDTCIGCGLCVALAPEVFELDDDGKAVVLDEEVPEELEEDVREAADACPVGAITVEE 63
 
Name Accession Description Interval E-value
Fer COG1141
Ferredoxin [Energy production and conversion];
1-63 9.33e-19

Ferredoxin [Energy production and conversion];


Pssm-ID: 440756 [Multi-domain]  Cd Length: 63  Bit Score: 71.45  E-value: 9.33e-19
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489994245  1 MRVEVDRDRCEGNAVCVGIAPDLFELDDEDYAVVKSDPVPADQEDLAEQAVNECPRAALIRKD 63
Cdd:COG1141   1 MKVTVDRDTCIGCGLCVALAPEVFELDDDGKAVVLDEEVPEELEEDVREAADACPVGAITVEE 63
Fer4_15 pfam13459
4Fe-4S single cluster domain;
3-60 4.08e-10

4Fe-4S single cluster domain;


Pssm-ID: 404359 [Multi-domain]  Cd Length: 66  Bit Score: 49.67  E-value: 4.08e-10
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 489994245   3 VEVDRDRCEGNAVCVGIAPDLFELDDEDYAVVK-------SDPVPADQEDLAEQAVNECPRAALI 60
Cdd:pfam13459  1 VEVDRDRCIGCGLCVALDPELFELDDDGKASVLlddgeigEGEVPDDDEEAAQEAARACPVDAIR 65
 
Name Accession Description Interval E-value
Fer COG1141
Ferredoxin [Energy production and conversion];
1-63 9.33e-19

Ferredoxin [Energy production and conversion];


Pssm-ID: 440756 [Multi-domain]  Cd Length: 63  Bit Score: 71.45  E-value: 9.33e-19
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489994245  1 MRVEVDRDRCEGNAVCVGIAPDLFELDDEDYAVVKSDPVPADQEDLAEQAVNECPRAALIRKD 63
Cdd:COG1141   1 MKVTVDRDTCIGCGLCVALAPEVFELDDDGKAVVLDEEVPEELEEDVREAADACPVGAITVEE 63
Fer4_15 pfam13459
4Fe-4S single cluster domain;
3-60 4.08e-10

4Fe-4S single cluster domain;


Pssm-ID: 404359 [Multi-domain]  Cd Length: 66  Bit Score: 49.67  E-value: 4.08e-10
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 489994245   3 VEVDRDRCEGNAVCVGIAPDLFELDDEDYAVVK-------SDPVPADQEDLAEQAVNECPRAALI 60
Cdd:pfam13459  1 VEVDRDRCIGCGLCVALDPELFELDDDGKASVLlddgeigEGEVPDDDEEAAQEAARACPVDAIR 65
Fer4_13 pfam13370
4Fe-4S single cluster domain of Ferredoxin I; Fer4_13 is a ferredoxin I from sulfate-reducing ...
 5-58 1.20e-09

4Fe-4S single cluster domain of Ferredoxin I; Fer4_13 is a ferredoxin I from sulfate-reducing bacteria. Chemical sequence analysis suggests that this characteriztic [4Fe-4S] cluster sulfur environment is widely distributed among ferredoxins.


Pssm-ID: 433153 [Multi-domain]  Cd Length: 58  Bit Score: 48.07  E-value: 1.20e-09
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 489994245   5 VDRDRCEGNAVCVGIAPDLFELDDED-YAVVKSDPVPADQEDLAEQAVNECPRAA 58
Cdd:pfam13370  1 VDEDTCIDCGTCRELAPEVFKYDDDGgASFVHDQPVNEEEEDLAEEALDSCPVEA 55
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH