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Conserved domains on  [gi|489827974|ref|WP_003731735|]
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hypothetical protein [Listeria monocytogenes]

Protein Classification

head-tail connector protein( domain architecture ID 10169103)

phage gp6-like head-tail connector protein is critical in the assembly of the connector, a specialized phage structure that serves as an interface for head and tail attachment, as well as a point at which DNA exits the head during infection by the bacteriophage

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Yqbg cd08053
Putative Head-Tail Connector Protein Yqbg from Bacillus subtilis and similar proteins; The ...
1-128 1.69e-35

Putative Head-Tail Connector Protein Yqbg from Bacillus subtilis and similar proteins; The uncharacterized Bacillus subtilis Yqbg protein, whose gene is part of the unusual genetic element called skin, shows a similar structure to the connector proteins gp6 and gp15 from bacteriophage HK97 and SPP1, respectively. gp6 and gp15 are critical in the assembly of the connector, a specialized structure that serves as an interface for head and tail attachment, as well as a point at which DNA exits the head during infection by the bacteriophage. They form dodecameric ring structures that comprise the middle ring of the connector, located between the portal protein (attached to the head) and the gp7/gp16 ring (attached to the tail). The Yqbg gene is surrounded with genes similar to genes in the Bacillus subtilis prophage-like element PBSX, which encode for proteins comprising contractile-tailed phage-like particles that are produced upon mitomycin C treatment. Yqbg likely acts as a head-tail connector protein, similar to gp6 and gp15, of the PBSX-like prophage encoded in the skin element.


:

Pssm-ID: 153445  Cd Length: 121  Bit Score: 118.62  E-value: 1.69e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489827974   1 MPYTTLEFYTNEYAGEHLEQEEFAKLLKHAERKIDSVTFYRIRKSGieafSEFIQHQIQLATCNQIEYFKEAGGTSElAV 80
Cdd:cd08053    1 MTYADYEFYTEEYYGKERPEELLKKDILRASAKIDKITFGRFDDLG----YPEIPEEVKLAVCALAEYIALIDGDES-SG 75
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 489827974  81 SKPDNVSIGRTSISDSNFasTATSLNSGLVGSDVRSYLAHTGLLYNGV 128
Cdd:cd08053   76 GGVTSESIGDYSVSYSSG--TSGSLAKKDVYNLLLDYLAPTGLLYRGV 121
 
Name Accession Description Interval E-value
Yqbg cd08053
Putative Head-Tail Connector Protein Yqbg from Bacillus subtilis and similar proteins; The ...
1-128 1.69e-35

Putative Head-Tail Connector Protein Yqbg from Bacillus subtilis and similar proteins; The uncharacterized Bacillus subtilis Yqbg protein, whose gene is part of the unusual genetic element called skin, shows a similar structure to the connector proteins gp6 and gp15 from bacteriophage HK97 and SPP1, respectively. gp6 and gp15 are critical in the assembly of the connector, a specialized structure that serves as an interface for head and tail attachment, as well as a point at which DNA exits the head during infection by the bacteriophage. They form dodecameric ring structures that comprise the middle ring of the connector, located between the portal protein (attached to the head) and the gp7/gp16 ring (attached to the tail). The Yqbg gene is surrounded with genes similar to genes in the Bacillus subtilis prophage-like element PBSX, which encode for proteins comprising contractile-tailed phage-like particles that are produced upon mitomycin C treatment. Yqbg likely acts as a head-tail connector protein, similar to gp6 and gp15, of the PBSX-like prophage encoded in the skin element.


Pssm-ID: 153445  Cd Length: 121  Bit Score: 118.62  E-value: 1.69e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489827974   1 MPYTTLEFYTNEYAGEHLEQEEFAKLLKHAERKIDSVTFYRIRKSGieafSEFIQHQIQLATCNQIEYFKEAGGTSElAV 80
Cdd:cd08053    1 MTYADYEFYTEEYYGKERPEELLKKDILRASAKIDKITFGRFDDLG----YPEIPEEVKLAVCALAEYIALIDGDES-SG 75
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 489827974  81 SKPDNVSIGRTSISDSNFasTATSLNSGLVGSDVRSYLAHTGLLYNGV 128
Cdd:cd08053   76 GGVTSESIGDYSVSYSSG--TSGSLAKKDVYNLLLDYLAPTGLLYRGV 121
 
Name Accession Description Interval E-value
Yqbg cd08053
Putative Head-Tail Connector Protein Yqbg from Bacillus subtilis and similar proteins; The ...
1-128 1.69e-35

Putative Head-Tail Connector Protein Yqbg from Bacillus subtilis and similar proteins; The uncharacterized Bacillus subtilis Yqbg protein, whose gene is part of the unusual genetic element called skin, shows a similar structure to the connector proteins gp6 and gp15 from bacteriophage HK97 and SPP1, respectively. gp6 and gp15 are critical in the assembly of the connector, a specialized structure that serves as an interface for head and tail attachment, as well as a point at which DNA exits the head during infection by the bacteriophage. They form dodecameric ring structures that comprise the middle ring of the connector, located between the portal protein (attached to the head) and the gp7/gp16 ring (attached to the tail). The Yqbg gene is surrounded with genes similar to genes in the Bacillus subtilis prophage-like element PBSX, which encode for proteins comprising contractile-tailed phage-like particles that are produced upon mitomycin C treatment. Yqbg likely acts as a head-tail connector protein, similar to gp6 and gp15, of the PBSX-like prophage encoded in the skin element.


Pssm-ID: 153445  Cd Length: 121  Bit Score: 118.62  E-value: 1.69e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489827974   1 MPYTTLEFYTNEYAGEHLEQEEFAKLLKHAERKIDSVTFYRIRKSGieafSEFIQHQIQLATCNQIEYFKEAGGTSElAV 80
Cdd:cd08053    1 MTYADYEFYTEEYYGKERPEELLKKDILRASAKIDKITFGRFDDLG----YPEIPEEVKLAVCALAEYIALIDGDES-SG 75
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 489827974  81 SKPDNVSIGRTSISDSNFasTATSLNSGLVGSDVRSYLAHTGLLYNGV 128
Cdd:cd08053   76 GGVTSESIGDYSVSYSSG--TSGSLAKKDVYNLLLDYLAPTGLLYRGV 121
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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