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Conserved domains on  [gi|489827971|ref|WP_003731732|]
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phage scaffolding protein [Listeria monocytogenes]

Protein Classification

phage scaffolding protein( domain architecture ID 10536171)

phage scaffolding protein coassembles with capsid proteins to form the procapsid, in which the scaffolding protein is found within the external shell of icosahedrally arranged capsid protein subunits

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Phage_GP20 pfam06810
Phage minor structural protein GP20; This family consists of several phage minor structural ...
 14-151 5.73e-24

Phage minor structural protein GP20; This family consists of several phage minor structural protein GP20 sequences of around 180 residues in length. The function of this family is unknown.


:

Pssm-ID: 429131 [Multi-domain]  Cd Length: 149  Bit Score: 92.03  E-value: 5.73e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489827971   14 ETIDSIM-VEHGKSIQneKDKVTSAVAERDGLKSQLAQRDDDIEALKTDSGTSKSLKAQLETLQDNYETLKKDSEAKLVE 92
Cdd:pfam06810   1 EQADKVMeAENGKDIP--KAKFDEVNTERDTLKEQLATRDKQLKDLKKVAKDNEELQKQIDELQAKNKDAEADYEAKIAD 78

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 489827971   93 TRKGAALDLALANAKARNPKAVKALLDNDKLELTDEG-LKGLDEQLGALQESDAYLFAQE 151
Cdd:pfam06810  79 LKFDNAIKLALKGAKAKNEKAVKALLDKDKLKLKDDGtLIGLDEQIEGLKESDKYLFEQE 138
 
Name Accession Description Interval E-value
Phage_GP20 pfam06810
Phage minor structural protein GP20; This family consists of several phage minor structural ...
 14-151 5.73e-24

Phage minor structural protein GP20; This family consists of several phage minor structural protein GP20 sequences of around 180 residues in length. The function of this family is unknown.


Pssm-ID: 429131 [Multi-domain]  Cd Length: 149  Bit Score: 92.03  E-value: 5.73e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489827971   14 ETIDSIM-VEHGKSIQneKDKVTSAVAERDGLKSQLAQRDDDIEALKTDSGTSKSLKAQLETLQDNYETLKKDSEAKLVE 92
Cdd:pfam06810   1 EQADKVMeAENGKDIP--KAKFDEVNTERDTLKEQLATRDKQLKDLKKVAKDNEELQKQIDELQAKNKDAEADYEAKIAD 78

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 489827971   93 TRKGAALDLALANAKARNPKAVKALLDNDKLELTDEG-LKGLDEQLGALQESDAYLFAQE 151
Cdd:pfam06810  79 LKFDNAIKLALKGAKAKNEKAVKALLDKDKLKLKDDGtLIGLDEQIEGLKESDKYLFEQE 138
 
Name Accession Description Interval E-value
Phage_GP20 pfam06810
Phage minor structural protein GP20; This family consists of several phage minor structural ...
 14-151 5.73e-24

Phage minor structural protein GP20; This family consists of several phage minor structural protein GP20 sequences of around 180 residues in length. The function of this family is unknown.


Pssm-ID: 429131 [Multi-domain]  Cd Length: 149  Bit Score: 92.03  E-value: 5.73e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489827971   14 ETIDSIM-VEHGKSIQneKDKVTSAVAERDGLKSQLAQRDDDIEALKTDSGTSKSLKAQLETLQDNYETLKKDSEAKLVE 92
Cdd:pfam06810   1 EQADKVMeAENGKDIP--KAKFDEVNTERDTLKEQLATRDKQLKDLKKVAKDNEELQKQIDELQAKNKDAEADYEAKIAD 78

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 489827971   93 TRKGAALDLALANAKARNPKAVKALLDNDKLELTDEG-LKGLDEQLGALQESDAYLFAQE 151
Cdd:pfam06810  79 LKFDNAIKLALKGAKAKNEKAVKALLDKDKLKLKDDGtLIGLDEQIEGLKESDKYLFEQE 138
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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