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Conserved domains on  [gi|489822692|ref|WP_003726486|]
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MULTISPECIES: iron ABC transporter permease [Listeria]

Protein Classification

FecCD family ABC transporter permease( domain architecture ID 10001816)

FecCD family ABC transporter permease such as iron ABC transporter permease, which is the transmembrane subunit (TM) found in a periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporter involved in the import of iron and iron-containing compounds

CATH:  1.10.3470.10
Gene Ontology:  GO:0140359|GO:0042626
PubMed:  25750732|24638992
SCOP:  4002900
TCDB:  3.A.1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FepD COG0609
ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and ...
 32-333 4.23e-106

ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism];


:

Pssm-ID: 440374  Cd Length: 306  Bit Score: 312.39  E-value: 4.23e-106
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822692  32 GLTTGSVKITYSDAWQTLTG-GGSDLANQLIWNLRLPRLLIAFLVGAALAIAGCLLQGVMRNPLADPGVIGVSAGGGFVA 110
Cdd:COG0609    1 SLSLGAVPISLSDVLRALLGpDGDPTADLIVWDLRLPRVLLALLVGAALAVAGALMQGLTRNPLADPGILGVSSGAALGA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822692 111 ILMTLAFPALASF-VPIGAFLGAFGTAILIYLLAW-DRGVSPLRVILSGVAINAFIGAMTSGVMVL-YSNRVQSVISWMT 187
Cdd:COG0609   81 VLAIVLGGGLSALgLPLAAFLGALLAALLVYLLARrGGGLSPLRLVLAGVAVSALFSALTSLLLLLaDPEQLRSIVFWLM 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822692 188 GTLSGKSWYHLDMIWPYMLVGFVLSGFAIRSSNVLLLGDDAAKLLGFSVERHRFFIIMLAAFLSGVAVSVAGLIGFVGLV 267
Cdd:COG0609  161 GSLAGASWDDVLLLLPVLLIGLLLALLLARALNALALGDETARSLGVNVERLRLLLLLLAALLTGAAVAVAGPIGFVGLV 240

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489822692 268 VPHIFRLIIGNDYKYLLPLSALGGALLVGFADTAARSWFGSIELPVGILLAMIGAPFFLFLLQRGR 333
Cdd:COG0609  241 VPHIARLLVGPDHRRLLPASALLGALLLLLADTLARTILAPAELPVGIVTALIGAPFFLYLLRRRR 306
 
Name Accession Description Interval E-value
FepD COG0609
ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and ...
 32-333 4.23e-106

ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440374  Cd Length: 306  Bit Score: 312.39  E-value: 4.23e-106
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822692  32 GLTTGSVKITYSDAWQTLTG-GGSDLANQLIWNLRLPRLLIAFLVGAALAIAGCLLQGVMRNPLADPGVIGVSAGGGFVA 110
Cdd:COG0609    1 SLSLGAVPISLSDVLRALLGpDGDPTADLIVWDLRLPRVLLALLVGAALAVAGALMQGLTRNPLADPGILGVSSGAALGA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822692 111 ILMTLAFPALASF-VPIGAFLGAFGTAILIYLLAW-DRGVSPLRVILSGVAINAFIGAMTSGVMVL-YSNRVQSVISWMT 187
Cdd:COG0609   81 VLAIVLGGGLSALgLPLAAFLGALLAALLVYLLARrGGGLSPLRLVLAGVAVSALFSALTSLLLLLaDPEQLRSIVFWLM 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822692 188 GTLSGKSWYHLDMIWPYMLVGFVLSGFAIRSSNVLLLGDDAAKLLGFSVERHRFFIIMLAAFLSGVAVSVAGLIGFVGLV 267
Cdd:COG0609  161 GSLAGASWDDVLLLLPVLLIGLLLALLLARALNALALGDETARSLGVNVERLRLLLLLLAALLTGAAVAVAGPIGFVGLV 240

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489822692 268 VPHIFRLIIGNDYKYLLPLSALGGALLVGFADTAARSWFGSIELPVGILLAMIGAPFFLFLLQRGR 333
Cdd:COG0609  241 VPHIARLLVGPDHRRLLPASALLGALLLLLADTLARTILAPAELPVGIVTALIGAPFFLYLLRRRR 306
FecCD pfam01032
FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport ...
 24-331 6.86e-84

FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.


Pssm-ID: 426003  Cd Length: 311  Bit Score: 255.91  E-value: 6.86e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822692   24 LLILAFFYGLTTGSVKITYSDAWQTLTGGGSDLANQLIWNLRLPRLLIAFLVGAALAIAGCLLQGVMRNPLADPGVIGVS 103
Cdd:pfam01032   1 LLLLLILLSLFIGAVKISPSDVFSALLGGDDSLAALIVLDLRLPRVLAALLVGAALAVSGALLQTVTRNPLADPSILGIS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822692  104 AGGGFVAILMTLAFPALASF-VPIGAFLGAFGTAILIYLLA-WDRGVSPLRVILSGVAINAFIGAMTSGVMVLYS-NRVQ 180
Cdd:pfam01032  81 SGAALGAVLAILLGGSLSLFaLPLAAFIGALLAALLVYFLSrGRGGASPLRLILAGIAVSALLSALTSLLLLLLNpEALQ 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822692  181 SVISWMTGTLSGKSWYHLDMIWPYMLVGFVLSGFAIRSSNVLLLGDDAAKLLGFSVERHRFFIIMLAAFLSGVAVSVAGL 260
Cdd:pfam01032 161 SILFWLMGSLSGANWSDVLILLPLLLIGLILLLLLARKLNLLSLGDDTAKSLGVNVNRVRLLLLLLASLLTAASVAVVGP 240

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 489822692  261 IGFVGLVVPHIFRLIIGNDYKYLLPLSALGGALLVGFADTAARSWFGSIELPVGILLAMIGAPFFLFLLQR 331
Cdd:pfam01032 241 IGFVGLIVPHIARLLVGANHRRLLPLSALLGALLLLLADILARTILSPYELPVGIVTALIGAPFFIYLLLR 311
PRK10577 PRK10577
Fe(3+)-hydroxamate ABC transporter permease FhuB;
6-336 2.24e-69

Fe(3+)-hydroxamate ABC transporter permease FhuB;


Pssm-ID: 236720 [Multi-domain]  Cd Length: 668  Bit Score: 228.57  E-value: 2.24e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822692   6 AHDPRRKRRRITFIVVIILLILAFFYGLTTGSVKITYSDAWQTLTGGGSDLANQLI-WNLRLPRLLIAFLVGAALAIAGC 84
Cdd:PRK10577   2 PRLMSRRRARLPALLLALLLLLALALTLTQLSAALPLSQWLQALWGPDADDLEQLLlHYSRLPRLAIALLVGAALGLAGA 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822692  85 LLQGVMRNPLADPGVIGVSAGGGFVAILMTLAFPALASFVPIG-AFLGAFGTAILIYLLAWDRGVSPLRVILSGVAINAF 163
Cdd:PRK10577  82 LLQQVLRNPLASPTTLGVAAGAQLALVLATLFAPALLALASQLaAFAGGLLAAALVFALAGGKRLSPLRLVLAGMVVSLY 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822692 164 IGAMTSGVMVLYSNRVQSVISWMTGTLSGKSWYHLDMIWPYMLVGFVLSGFAIRSSNVLLLGDDAAKLLGFSVERHRFFI 243
Cdd:PRK10577 162 LGALTTLLLLFNEQYLQGLFLWGAGSLAQNDWSGVQRLLPRLLVGLLLLLLLARPLTLLGLGDDVARSLGLAVSLTRLAA 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822692 244 IMLAAFLSGVAVSVAGLIGFVGLVVPHIFRLIIGNDYKYLLPLSALGGALLVGFADTAAR--SWFGSIELPVGILLAMIG 321
Cdd:PRK10577 242 LALAVLLSAAVVSAVGPIGFIGLAAPNLARLLGARRLRARLPLSPLIGALLLLLTDQLVRllAGVGGELLPTGAVTALIG 321

                        330
                 ....*....|....*
gi 489822692 322 APFFLFLLQRGRVAS 336
Cdd:PRK10577 322 APLLLWLLPRLRSAQ 336
F420-0_ABCperm TIGR03869
proposed F420-0 ABC transporter, permease protein; his small clade of ABC-type transporter ...
 25-333 2.01e-53

proposed F420-0 ABC transporter, permease protein; his small clade of ABC-type transporter permease protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and an ATPase (TIGR03873). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with an F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this permease protein is a component of a F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.


Pssm-ID: 163581  Cd Length: 325  Bit Score: 178.12  E-value: 2.01e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822692   25 LILAFFYGLTTGSVKITYSDAWQT--------LTGGG---SDLANQLIWNLRLPRLLIAFLVGAALAIAGCLLQGVMRNP 93
Cdd:TIGR03869   2 LLASLVVAVTIGPADISVGEVWRSvaahlgrgEGFPGvalSRLQDAIVWDLRLPRVLTAAAVGAGLAIAGAVMQSLTRNP 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822692   94 LADPGVIGVSAGGGFVAILMTLAFPALAsfVPIGAFLGAFGTAILIYLLAWDRG-VSPLRVILSGVAINAFIGAMTSGVM 172
Cdd:TIGR03869  82 LADPYLLGLSSGASLGAVAVLVLGVAVL--LPVAAFAGALLALAATLGLARTLGtLTPTRTILAGLAVSQLCAAVTSFVI 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822692  173 VLYS--NRVQSVISWMTGTLSGKSWYHLDM-IWPYMLVGFVLSGFAiRSSNVLLLGDDAAKLLGFSVERHRFFIIMLAAF 249
Cdd:TIGR03869 160 FWSAtgDSYREILSWLMGSLAGATWGSVAIaGGALLVVGLVLLASG-RVLDAFAFGDSSAAALGVDVERTRWLLLTLVAL 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822692  250 LSGVAVSVAGLIGFVGLVVPHIFRLIIGNDYKYLLPLSALGGALLVGFADTAARSWFGSIELPVGILLAMIGAPFFLFLL 329
Cdd:TIGR03869 239 LTGALVSVSGAIGFVGLILPHAVRLLTGPRHRLLLPVSALAGAVFLVWADTLARTVFAPRELPVGIITALIGAPVFAVLL 318


                  ....
gi 489822692  330 QRGR 333
Cdd:TIGR03869 319 YRSR 322
TM_ABC_iron-siderophores_like cd06550
Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 69-329 1.66e-48

Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The TMs are bundles of alpha helices that transverse the cytoplasmic membrane multiple times. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Each TM has a prominent cytoplasmic loop which contacts an ABC and represents a conserved motif. The two TMs form either a homodimer (e.g. in the case of the BtuC subunits of the Escherichia coli BtuCD vitamin B12 transporter), a heterodimer (e.g. the TroC and TroD subunits of the Treponema pallidum general transition metal transporter, TroBCD), or a pseudo-heterodimer (e.g. the FhuB protein of the E. coli ferrichrome transporter, FhuBC). FhuB contains two tandem TMs which associate to form the pseudo-heterodimer. Both FhuB TMs are found in this hierarchy.


Pssm-ID: 119348 [Multi-domain]  Cd Length: 261  Bit Score: 163.50  E-value: 1.66e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822692  69 LLIAFLVGAALAIAGCLLQGVMRNPLADPGVIGVSAGGGFVAILMTLAFPALAS-FVPIGAFLGAFGTAILIYLLAWDRG 147
Cdd:cd06550    1 LLAALLVGAALAVSGAILQSLTRNRLASPSILGISHGALLGVVLALLLGIGLSNyALGAFAFAGALAIALLVLLLASRGG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822692 148 VSPLRVILSGVAINAFIGAMTSGVMVLYSNRVQSVISWMTGTLSGKSWYHLDMIWPYMLVGFVLSGFAIRSSNVLLLGDD 227
Cdd:cd06550   81 LSPSKLILIGIVLSAFFSAGVILISLLSDDSLQDLNIWLFGSILGVTWEDLLILLIILLLVLLLLLLLSRKLNLLTFDED 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822692 228 AAKLLGFSVERHRFFIIMLAAFLSGVAVSVAGLIGFVGLVVPHIFRLIIGNDYKYLLPLSALGGALLVGFADTAARsWFG 307
Cdd:cd06550  161 LAKSLGINVNLLRLLLLLLVALLVVAAVALVGVILFVGLIAPHLARRLFGRSHRYLLPLSALLGAILLLLGDLLSR-TLL 239

                        250       260
                 ....*....|....*....|..
gi 489822692 308 SIELPVGILLAMIGAPFFLFLL 329
Cdd:cd06550  240 PSELPVGPVTALLGAPYFLYLL 261
 
Name Accession Description Interval E-value
FepD COG0609
ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and ...
 32-333 4.23e-106

ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440374  Cd Length: 306  Bit Score: 312.39  E-value: 4.23e-106
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822692  32 GLTTGSVKITYSDAWQTLTG-GGSDLANQLIWNLRLPRLLIAFLVGAALAIAGCLLQGVMRNPLADPGVIGVSAGGGFVA 110
Cdd:COG0609    1 SLSLGAVPISLSDVLRALLGpDGDPTADLIVWDLRLPRVLLALLVGAALAVAGALMQGLTRNPLADPGILGVSSGAALGA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822692 111 ILMTLAFPALASF-VPIGAFLGAFGTAILIYLLAW-DRGVSPLRVILSGVAINAFIGAMTSGVMVL-YSNRVQSVISWMT 187
Cdd:COG0609   81 VLAIVLGGGLSALgLPLAAFLGALLAALLVYLLARrGGGLSPLRLVLAGVAVSALFSALTSLLLLLaDPEQLRSIVFWLM 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822692 188 GTLSGKSWYHLDMIWPYMLVGFVLSGFAIRSSNVLLLGDDAAKLLGFSVERHRFFIIMLAAFLSGVAVSVAGLIGFVGLV 267
Cdd:COG0609  161 GSLAGASWDDVLLLLPVLLIGLLLALLLARALNALALGDETARSLGVNVERLRLLLLLLAALLTGAAVAVAGPIGFVGLV 240

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489822692 268 VPHIFRLIIGNDYKYLLPLSALGGALLVGFADTAARSWFGSIELPVGILLAMIGAPFFLFLLQRGR 333
Cdd:COG0609  241 VPHIARLLVGPDHRRLLPASALLGALLLLLADTLARTILAPAELPVGIVTALIGAPFFLYLLRRRR 306
FecCD pfam01032
FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport ...
 24-331 6.86e-84

FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.


Pssm-ID: 426003  Cd Length: 311  Bit Score: 255.91  E-value: 6.86e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822692   24 LLILAFFYGLTTGSVKITYSDAWQTLTGGGSDLANQLIWNLRLPRLLIAFLVGAALAIAGCLLQGVMRNPLADPGVIGVS 103
Cdd:pfam01032   1 LLLLLILLSLFIGAVKISPSDVFSALLGGDDSLAALIVLDLRLPRVLAALLVGAALAVSGALLQTVTRNPLADPSILGIS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822692  104 AGGGFVAILMTLAFPALASF-VPIGAFLGAFGTAILIYLLA-WDRGVSPLRVILSGVAINAFIGAMTSGVMVLYS-NRVQ 180
Cdd:pfam01032  81 SGAALGAVLAILLGGSLSLFaLPLAAFIGALLAALLVYFLSrGRGGASPLRLILAGIAVSALLSALTSLLLLLLNpEALQ 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822692  181 SVISWMTGTLSGKSWYHLDMIWPYMLVGFVLSGFAIRSSNVLLLGDDAAKLLGFSVERHRFFIIMLAAFLSGVAVSVAGL 260
Cdd:pfam01032 161 SILFWLMGSLSGANWSDVLILLPLLLIGLILLLLLARKLNLLSLGDDTAKSLGVNVNRVRLLLLLLASLLTAASVAVVGP 240

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 489822692  261 IGFVGLVVPHIFRLIIGNDYKYLLPLSALGGALLVGFADTAARSWFGSIELPVGILLAMIGAPFFLFLLQR 331
Cdd:pfam01032 241 IGFVGLIVPHIARLLVGANHRRLLPLSALLGALLLLLADILARTILSPYELPVGIVTALIGAPFFIYLLLR 311
FepG COG4779
ABC-type enterobactin transport system, permease component [Inorganic ion transport and ...
 10-333 4.75e-80

ABC-type enterobactin transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 443810  Cd Length: 344  Bit Score: 247.34  E-value: 4.75e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822692  10 RRKRRRITFIVVIILLILA-FFYGLTTGSVKITYSDAWQTLTGGGSDLANQLIWNLRLPRLLIAFLVGAALAIAGCLLQG 88
Cdd:COG4779   17 RLRRRALLVTLVLLLLLLAlAVLALTLGDYPLSPGDVLRALLGEGDPGASFVVLELRLPRALAALLVGAALGLSGAIFQS 96

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822692  89 VMRNPLADPGVIGVSAGGGFVAILMTLAFPALASFVPIGAFLGAFGTAILIYLLAWDRGVSPLRVILSGVAINAFIGAMT 168
Cdd:COG4779   97 LTRNPLASPDIIGITAGASAGAVAAIVVLGGSGLAVALGALAGGLATALLVYLLAWRGGVSGYRLILVGIGVSAMLTAVN 176

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822692 169 SGVMVLYS-NRVQSVISWMTGTLSGKSWYHLDMIWPYMLVGFVLSGFAIRSSNVLLLGDDAAKLLGFSVERHRFFIIMLA 247
Cdd:COG4779  177 SYLLTRADlEDAQSAAVWLTGSLNGRTWEDVLPLAVALAVLLPLALALARRLRLLELGDDTAAALGVRVERTRLLLLLVA 256

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822692 248 AFLSGVAVSVAGLIGFVGLVVPHIFRLIIGNDYKYLLPlSALGGALLVGFADTAARSWFGSIELPVGILLAMIGAPFFLF 327
Cdd:COG4779  257 VALAAVATAAAGPIAFVALAAPQIARRLTRSPGPPLLP-SALVGALLLLAADLVAQHLLAPVQLPVGVVTGALGGPYLLW 335


                 ....*.
gi 489822692 328 LLQRGR 333
Cdd:COG4779  336 LLIREN 341
PRK10577 PRK10577
Fe(3+)-hydroxamate ABC transporter permease FhuB;
6-336 2.24e-69

Fe(3+)-hydroxamate ABC transporter permease FhuB;


Pssm-ID: 236720 [Multi-domain]  Cd Length: 668  Bit Score: 228.57  E-value: 2.24e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822692   6 AHDPRRKRRRITFIVVIILLILAFFYGLTTGSVKITYSDAWQTLTGGGSDLANQLI-WNLRLPRLLIAFLVGAALAIAGC 84
Cdd:PRK10577   2 PRLMSRRRARLPALLLALLLLLALALTLTQLSAALPLSQWLQALWGPDADDLEQLLlHYSRLPRLAIALLVGAALGLAGA 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822692  85 LLQGVMRNPLADPGVIGVSAGGGFVAILMTLAFPALASFVPIG-AFLGAFGTAILIYLLAWDRGVSPLRVILSGVAINAF 163
Cdd:PRK10577  82 LLQQVLRNPLASPTTLGVAAGAQLALVLATLFAPALLALASQLaAFAGGLLAAALVFALAGGKRLSPLRLVLAGMVVSLY 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822692 164 IGAMTSGVMVLYSNRVQSVISWMTGTLSGKSWYHLDMIWPYMLVGFVLSGFAIRSSNVLLLGDDAAKLLGFSVERHRFFI 243
Cdd:PRK10577 162 LGALTTLLLLFNEQYLQGLFLWGAGSLAQNDWSGVQRLLPRLLVGLLLLLLLARPLTLLGLGDDVARSLGLAVSLTRLAA 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822692 244 IMLAAFLSGVAVSVAGLIGFVGLVVPHIFRLIIGNDYKYLLPLSALGGALLVGFADTAAR--SWFGSIELPVGILLAMIG 321
Cdd:PRK10577 242 LALAVLLSAAVVSAVGPIGFIGLAAPNLARLLGARRLRARLPLSPLIGALLLLLTDQLVRllAGVGGELLPTGAVTALIG 321

                        330
                 ....*....|....*
gi 489822692 322 APFFLFLLQRGRVAS 336
Cdd:PRK10577 322 APLLLWLLPRLRSAQ 336
btuC PRK09535
cobalamin ABC transporter permease BtuC;
54-336 2.58e-68

cobalamin ABC transporter permease BtuC;


Pssm-ID: 236553  Cd Length: 366  Bit Score: 218.08  E-value: 2.58e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822692  54 SDLANQLIWNLRLPRLLIAFLVGAALAIAGCLLQGVMRNPLADPGVIGVSAGGGfVAILMTLAFPALASF-VPIGAFLGA 132
Cdd:PRK09535  84 PETAQTIVLQIRLPRILLAATVGFALAAAGTVMQGFFRNPMADPSIIGVSSGAA-VGAVAAIVLPLAVPFgLQAAAFAGA 162

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822692 133 FGTAILIYLLAWDRGVSPL-RVILSGVAINAFIGAMTSGVMVLYSNRVQSVISWMTGTLSGKSWYHLDMIWPYMLVGFVL 211
Cdd:PRK09535 163 LVAAFGVYAIATENGRTPVaTLLLAGVAVQTFLGAVISYLLLHSGESLRRAVYWLMGHLHGSTWSDVEVALPVVVVGFVV 242

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822692 212 SGFAIRSSNVLLLGDDAAKLLGFSVERHRFFIIMLAAFLSGVAVSVAGLIGFVGLVVPHIFRLIIGNDYKYLLPLSALGG 291
Cdd:PRK09535 243 LLAYARDLNVLLLGEEDAHTLGIEVERTKRLLLALASVVTAAAVAVAGVIGFVGLIVPHVMRLLVGPDHRILLPTSALAG 322

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*
gi 489822692 292 ALLVGFADTAARSwfGSIELPVGILLAMIGAPFFLFLLQRGRVAS 336
Cdd:PRK09535 323 ASFLVATDTVARS--GPAEVPVGIVTAALGAPFFLYLLRTREVHA 365
PRK10577 PRK10577
Fe(3+)-hydroxamate ABC transporter permease FhuB;
1-335 4.10e-66

Fe(3+)-hydroxamate ABC transporter permease FhuB;


Pssm-ID: 236720 [Multi-domain]  Cd Length: 668  Bit Score: 220.10  E-value: 4.10e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822692   1 MTTVKAHDPRRKRRRITFIVVIILLILAFFYGLTTGSVkitySDAWQTLTGGgsdlANQLIWNLRLPRLLIAFLVGAALA 80
Cdd:PRK10577 341 MSAGDRVAARRRRVLAWLLALGLLLLLALVVALSFGRD----AHGWNWLSGQ----LLDALLPLRLPRLLAALLAGAMLA 412

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822692  81 IAGCLLQGVMRNPLADPGVIGVSAGGGFVAILMTLAFPALA-SFVPIGAFLGAFGTAILIYLLAWDRGVSPLRVILSGVA 159
Cdd:PRK10577 413 VAGTLLQRLTRNPLASPEVLGISSGAGLGVVLALFLVPGAGfGWLLAAALLGALAALALILLLARRGGFAPERLLLTGIA 492

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822692 160 INAFIGAMTSGVMVLYSNRVQSVISWMTGTLSGKSWYHLDMIWPYMLVGFVLSGFAIRSSNVLLLGDDAAKLLGFSVERH 239
Cdd:PRK10577 493 LSALFTALIQLLLASGDPRAAQLLTWLSGSTYGVTWAQALPLLIVAVLLLALALLLRRWLDLLPLGDDTARALGLPVTRA 572

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822692 240 RFFIIMLAAFLSGVAVSVAGLIGFVGLVVPHIFRLIIGNDYKYLLPLSALGGALLVGFADTAARSWFGSIELPVGILLAM 319
Cdd:PRK10577 573 RLALLLLAALLTAAATATVGPLSFVGLMAPHLARMLGGRRARPQLVLAALLGALLMVLADWLGRTLLFPYQIPAGLLAAL 652

                        330
                 ....*....|....*.
gi 489822692 320 IGAPFFLFLLQRGRVA 335
Cdd:PRK10577 653 IGAPYFLWLLRRSRRR 668
BtuC COG4139
ABC-type cobalamin transport system, permease component BtuC [Coenzyme transport and ...
 11-333 1.71e-64

ABC-type cobalamin transport system, permease component BtuC [Coenzyme transport and metabolism];


Pssm-ID: 443314  Cd Length: 327  Bit Score: 207.01  E-value: 1.71e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822692  11 RKRRRITFIVVIILLILAFFYGLTTGSVKITYSDAWqtltgggSDLANQLIWNLRLPRLLIAFLVGAALAIAGCLLQGVM 90
Cdd:COG4139    8 RRRDRRWLLLLLLLLLLLFVLSLCAGEVWIPPTQWL-------SEAWQLFVWQLRLPRTLAAVLVGASLAVSGAVMQALF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822692  91 RNPLADPGVIGVSAGGGFVAILMTLAFPALASF--VPIGAFLGAFGTAILIYLLAwDRGVSPLRVILSGVAINAFIGAMT 168
Cdd:COG4139   81 ENPLAEPGLLGISNGAGVGLVLVVLLGGGLLPPwlLSLAAIAGALLVTLLLLAFA-RRRLSNARLLLIGVALGIICSAIM 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822692 169 SgVMVLYSN--RVQSVISWMTGTLSGKSWYHLdMIWPYMLVGFVLSGFAIRSSNVLLLGDDAAKLLGFSVERHRFFIIML 246
Cdd:COG4139  160 T-WAVYFSSslDLRQLMYWMMGSFGGVDWRQL-WLLLALLPVLLWLCLQGKPLNLLLLGENQARQLGLSVHRWRNLLVLA 237

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822692 247 AAFLSGVAVSVAGLIGFVGLVVPHIFRLIIGNDYKYLLPLSALGGALLVGFADTAARSWFGSIELPVGILLAMIGAPFFL 326
Cdd:COG4139  238 TGLLVGVSVALAGPIGFVGLVVPHLLRLLGTTDHRFLLPACALAGAALLLLADIIARLALSSAELPIGVVTATLGAPVFI 317


                 ....*..
gi 489822692 327 FLLQRGR 333
Cdd:COG4139  318 WLLLRRR 324
PRK03784 PRK03784
vtamin B12-transporter permease; Provisional
 1-336 1.05e-63

vtamin B12-transporter permease; Provisional


Pssm-ID: 235159  Cd Length: 331  Bit Score: 205.19  E-value: 1.05e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822692   1 MTTVKAHDPRRKRRRITfiVVIILLILAFFYGLTTGSVKITYSDAWqtltgggSDLANQLIWNLRLPRLLIAFLVGAALA 80
Cdd:PRK03784   3 MLTLARQQQRRNRRWLL--GLSVLLLLALLLSLCAGEQWISPGDWL-------SPRGELFVWQLRLPRTLAVLLVGAALA 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822692  81 IAGCLLQGVMRNPLADPGVIGVSAGGGFVAILMTLAFPALASF--VPIGAFLGAFGTAILIYLLAWDRGVSPLRVILSGV 158
Cdd:PRK03784  74 VSGAVMQALFENPLAEPGLLGVSNGAGVALVAAVLLGQGLLPPwaLSLCAIAGALLITLILLRFARRHRLSTSRLLLAGV 153

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822692 159 AINAFIGA-MTSGVMVLYSNRVQSVISWMTGTLSGKSWYHLDMIWPYMLVGFVLSGFAiRSSNVLLLGDDAAKLLGFSVE 237
Cdd:PRK03784 154 ALGIICSAlMTWAVYFSTSLDLRQLMYWMMGGFGGVDWRQSWLMLALLPVLIWLCCQG-RPLNMLALGEISARQLGLPLW 232

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822692 238 RHRFFIIMLAAFLSGVAVSVAGLIGFVGLVVPHIFRLIIGNDYKYLLPLSALGGALLVGFADTAARSWFGSIELPVGILL 317
Cdd:PRK03784 233 FWRNLLVLATGWLVGVSVALAGAIGFIGLVIPHILRLCGLTDHRVLLPGCALAGASLLLLADIVARLALASAELPIGVVT 312

                        330
                 ....*....|....*....
gi 489822692 318 AMIGAPFFLFLLQRGRVAS 336
Cdd:PRK03784 313 ATLGAPVFIWLLLRSHRAR 331
fecC PRK11228
iron-dicitrate ABC transporter permease FecC;
19-333 1.65e-58

iron-dicitrate ABC transporter permease FecC;


Pssm-ID: 183042  Cd Length: 323  Bit Score: 191.45  E-value: 1.65e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822692  19 IVVIILLILAFFYGLTTGSVKITYSDAWQTL-TGGGSDLANQLIWNLRLPRLLIAFLVGAALAIAGCLLQGVMRNPLADP 97
Cdd:PRK11228   4 LPVAALIGLFWLSLFCYSAIPISAADALNALlPGHTPTLPEALVQNLRLPRSLVAVLIGASLALAGALLQTLTHNPLASP 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822692  98 GVIGVSAGGGFVAILMTLAFPALASFVPIgAFLGAFGTAI---LIYLL--AWDRGVSPLRVILSGVAINAFIGAMTSGVM 172
Cdd:PRK11228  84 SLLGINSGAALAMALTSALSPTPFAGYSL-AFIAACGGGLswlLVMTAggGWRHTHDRNRLILAGIALSALCMALTRITL 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822692 173 VLYSNRVQSVISWMTGTLSGKSWYHLDMIWPYMLVGFVLSGFAIRSSNVLLLGDDAAKLLGFSVERHRFFIIMLAAFLSG 252
Cdd:PRK11228 163 LLAEDHAYGIFYWLAGGVSHARWQEVWQLLPFVVTAVPVVLLLANQLNLLNLSDSSAHTLGVNLTRLRLVVNMLVLLLVG 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822692 253 VAVSVAGLIGFVGLVVPHIFRLIIGNDYKYLLPLSALGGALLVGFADTAARSWFGSIELPVGILLAMIGAPFFLFLLQRG 332
Cdd:PRK11228 243 ACVSVAGPVAFIGLLVPHLARFWIGYDQRNVLPMSMLLGATLMLLADLLARALAFPGELPAGAVLALIGAPCFVWLARRR 322


                 .
gi 489822692 333 R 333
Cdd:PRK11228 323 G 323
fecD PRK09777
Fe(3+) dicitrate ABC transporter permease subunit FecD;
13-333 5.42e-58

Fe(3+) dicitrate ABC transporter permease subunit FecD;


Pssm-ID: 182071  Cd Length: 318  Bit Score: 189.87  E-value: 5.42e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822692  13 RRRITFIVVIILLILAFFYGLTTGSVKITYSD---AWQTltgggSDLANQLIWNLRLPRLLIAFLVGAALAIAGCLLQGV 89
Cdd:PRK09777   1 MKIALVIFITLALAGCALLSLRMGVIPLPWRAlltDWQA-----GDEHYYVLMEYRLPRLLLALFVGAALAVSGVLVQGI 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822692  90 MRNPLADPGVIGVSAGGGFVAILMTLAFPALA-SFVPIGAFLGAFGTAILIYLLAWDRgvSPLRVILSGVAINAFIGAMT 168
Cdd:PRK09777  76 VRNPLASPDILGVNHAASLASVGALLLFPSLPvMWLPLLAFIGGMAGLILLKMLAGTH--QPMKLALTGVALSALWASLT 153

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822692 169 SGVMVLYSNRVQSVISWMTGTLSGKSWYHLDMIWPYMLVGFVLSGFAIRSSNVLLLGDDAAKLLGFSVERHRFFIIMLAA 248
Cdd:PRK09777 154 DYLMLSRPQDINNALLWLTGSLWGRDWSFVKVALPWLILLLPLSLSFCRDLDLLALGDARATTLGVSVPHTQFWALLLAV 233

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822692 249 FLSGVAVSVAGLIGFVGLVVPHIFRLIIGNDYKYLLPLSALGGALLVGFADTAARSWFGSIELPVGILLAMIGAPFFLFL 328
Cdd:PRK09777 234 ALTATGVAACGPISFIGLVVPHLMRSLVGGRHRRLLPVSALTGALLLLLADLLARIIHPPLELPAGVLTAIIGAPWFFWL 313


                 ....*
gi 489822692 329 LQRGR 333
Cdd:PRK09777 314 LVRMR 318
F420-0_ABCperm TIGR03869
proposed F420-0 ABC transporter, permease protein; his small clade of ABC-type transporter ...
 25-333 2.01e-53

proposed F420-0 ABC transporter, permease protein; his small clade of ABC-type transporter permease protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and an ATPase (TIGR03873). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with an F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this permease protein is a component of a F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.


Pssm-ID: 163581  Cd Length: 325  Bit Score: 178.12  E-value: 2.01e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822692   25 LILAFFYGLTTGSVKITYSDAWQT--------LTGGG---SDLANQLIWNLRLPRLLIAFLVGAALAIAGCLLQGVMRNP 93
Cdd:TIGR03869   2 LLASLVVAVTIGPADISVGEVWRSvaahlgrgEGFPGvalSRLQDAIVWDLRLPRVLTAAAVGAGLAIAGAVMQSLTRNP 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822692   94 LADPGVIGVSAGGGFVAILMTLAFPALAsfVPIGAFLGAFGTAILIYLLAWDRG-VSPLRVILSGVAINAFIGAMTSGVM 172
Cdd:TIGR03869  82 LADPYLLGLSSGASLGAVAVLVLGVAVL--LPVAAFAGALLALAATLGLARTLGtLTPTRTILAGLAVSQLCAAVTSFVI 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822692  173 VLYS--NRVQSVISWMTGTLSGKSWYHLDM-IWPYMLVGFVLSGFAiRSSNVLLLGDDAAKLLGFSVERHRFFIIMLAAF 249
Cdd:TIGR03869 160 FWSAtgDSYREILSWLMGSLAGATWGSVAIaGGALLVVGLVLLASG-RVLDAFAFGDSSAAALGVDVERTRWLLLTLVAL 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822692  250 LSGVAVSVAGLIGFVGLVVPHIFRLIIGNDYKYLLPLSALGGALLVGFADTAARSWFGSIELPVGILLAMIGAPFFLFLL 329
Cdd:TIGR03869 239 LTGALVSVSGAIGFVGLILPHAVRLLTGPRHRLLLPVSALAGAVFLVWADTLARTVFAPRELPVGIITALIGAPVFAVLL 318


                  ....
gi 489822692  330 QRGR 333
Cdd:TIGR03869 319 YRSR 322
TM_ABC_iron-siderophores_like cd06550
Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 69-329 1.66e-48

Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The TMs are bundles of alpha helices that transverse the cytoplasmic membrane multiple times. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Each TM has a prominent cytoplasmic loop which contacts an ABC and represents a conserved motif. The two TMs form either a homodimer (e.g. in the case of the BtuC subunits of the Escherichia coli BtuCD vitamin B12 transporter), a heterodimer (e.g. the TroC and TroD subunits of the Treponema pallidum general transition metal transporter, TroBCD), or a pseudo-heterodimer (e.g. the FhuB protein of the E. coli ferrichrome transporter, FhuBC). FhuB contains two tandem TMs which associate to form the pseudo-heterodimer. Both FhuB TMs are found in this hierarchy.


Pssm-ID: 119348 [Multi-domain]  Cd Length: 261  Bit Score: 163.50  E-value: 1.66e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822692  69 LLIAFLVGAALAIAGCLLQGVMRNPLADPGVIGVSAGGGFVAILMTLAFPALAS-FVPIGAFLGAFGTAILIYLLAWDRG 147
Cdd:cd06550    1 LLAALLVGAALAVSGAILQSLTRNRLASPSILGISHGALLGVVLALLLGIGLSNyALGAFAFAGALAIALLVLLLASRGG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822692 148 VSPLRVILSGVAINAFIGAMTSGVMVLYSNRVQSVISWMTGTLSGKSWYHLDMIWPYMLVGFVLSGFAIRSSNVLLLGDD 227
Cdd:cd06550   81 LSPSKLILIGIVLSAFFSAGVILISLLSDDSLQDLNIWLFGSILGVTWEDLLILLIILLLVLLLLLLLSRKLNLLTFDED 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822692 228 AAKLLGFSVERHRFFIIMLAAFLSGVAVSVAGLIGFVGLVVPHIFRLIIGNDYKYLLPLSALGGALLVGFADTAARsWFG 307
Cdd:cd06550  161 LAKSLGINVNLLRLLLLLLVALLVVAAVALVGVILFVGLIAPHLARRLFGRSHRYLLPLSALLGAILLLLGDLLSR-TLL 239

                        250       260
                 ....*....|....*....|..
gi 489822692 308 SIELPVGILLAMIGAPFFLFLL 329
Cdd:cd06550  240 PSELPVGPVTALLGAPYFLYLL 261
PRK10440 PRK10440
iron-enterobactin ABC transporter permease;
11-331 3.00e-44

iron-enterobactin ABC transporter permease;


Pssm-ID: 182463  Cd Length: 330  Bit Score: 154.48  E-value: 3.00e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822692  11 RKRRRITFIVVIILLILAFFYGLTTGSVKITYSDAWQTLTGGGSDLANQLIWNLRLPRLLIAFLVGAALAIAGCLLQGVM 90
Cdd:PRK10440   5 SRRLLITCLLLLAACVAAGLWGLRSGAVTLETSQVFAALMGDAPRSMTMVVTEWRLPRVLMALLIGAALGVSGAIFQSLM 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822692  91 RNPLADPGVIGVSAGGGFVAILMTLAFPALASFVPIGAFLGAFGTAILIYLLAWDRGVSPLRVILSGVAINAFIGAMTSG 170
Cdd:PRK10440  85 RNPLGSPDVMGFNTGAWSGVLVAMVLFGQDLTAIALAAMAGGIVTSLLVWLLAWRNGIDTFRLIIIGIGVRAMLVAFNTW 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822692 171 VMVLYSnrVQSVIS---WMTGTLSGKSWYHLDMIWPYMLVGFVLSGFAIRSSNVLLLGDDAAKLLGFSVERHRFFIIMLA 247
Cdd:PRK10440 165 LLLKAS--LETALTaglWNAGSLNGLTWAKTSPSAPIIILMLIAAALLVRRMRLLEMGDDTACALGVSVERSRLLLMLVA 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822692 248 AFLSGVAVSVAGLIGFVGLVVPHIFRLIIGNDyKYLLPLSALGGALLVGFADTAARSWFGSIELPVGILLAMIGAPFFLF 327
Cdd:PRK10440 243 VVLTAAATALAGPISFIALVAPHIARRLSGTA-RWGLTQAALCGALLLLAADLCAQQLFMPYQLPVGVVTVSLGGIYLIV 321


                 ....
gi 489822692 328 LLQR 331
Cdd:PRK10440 322 LLIQ 325
PRK10441 PRK10441
Fe(3+)-siderophore ABC transporter permease;
13-333 8.21e-44

Fe(3+)-siderophore ABC transporter permease;


Pssm-ID: 182464  Cd Length: 335  Bit Score: 153.32  E-value: 8.21e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822692  13 RRRITFIVVIILLILAFFYGLTTGSVKITYSDAWQTLTGGGSDLANQLIWNLRLPRLLIAFLVGAALAIAGCLLQGVMRN 92
Cdd:PRK10441   8 TRAIAVPGLLLLLIIATALSLLIGAKSLPASVVLEALSGTCQSADCTIVLDARLPRTLAGLLAGGALGLAGALMQTLTRN 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822692  93 PLADPGVIGVSAGGGFvAILMTLAFPALASFVPI--GAFLGAFGTAILIYLLAWDRG--VSPLRVILSGVAINAFIGAMT 168
Cdd:PRK10441  88 PLADPGLLGVNAGASF-AIVLGAALFGYSSAQEQlaMAFAGALVASLIVAFTGSQGGgqLSPVRLTLAGVALAAVLEGLT 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822692 169 SGVMVLYSNRVQSVISWMTGTLSGKSWYHLDMIWPYMLVGFVLSGFAIRSSNVLLLGDDAAKLLGFSVERHRFFIIMLAA 248
Cdd:PRK10441 167 SGIALLNPDVYDQLRFWQAGSLDIRNLHTLKVVLIPVLIAGATALLLSRALNSLSLGSDTATALGSRVARTQLIGLLAIT 246

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822692 249 FLSGVAVSVAGLIGFVGLVVPHIFRLIIGNDYKYLLPLSALGGALLVGFADTAARsWFGSIELPVGILLAMIGAPFFLFL 328
Cdd:PRK10441 247 VLCGSATAVVGPIAFIGLMMPHMARWLVGADHRWSLPVTLLATPALLLFADIIGR-LLVPGELRVSVVSAFIGAPVLIFL 325


                 ....*
gi 489822692 329 LQRGR 333
Cdd:PRK10441 326 VRRKT 330
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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