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Conserved domains on  [gi|489515693|ref|WP_003420527|]
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30S ribosomal protein S18 [Clostridioides difficile]

Protein Classification

30S ribosomal protein S18( domain architecture ID 10000799)

30S ribosomal protein S18 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit

Gene Symbol:  rpsR
Gene Ontology:  GO:0006412|GO:0003735|GO:0019843
PubMed:  24524803

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RpsR COG0238
Ribosomal protein S18 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S18 ...
 12-75 6.21e-38

Ribosomal protein S18 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S18 is part of the Pathway/BioSystem: Ribosome 30S subunit


:

Pssm-ID: 440008  Cd Length: 81  Bit Score: 120.64  E-value: 6.21e-38
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489515693 12 VCQFCADKNAKIDYKSTQRLQKYITERGKILPRRISGTCAKHQRELTVAIKRARNIALLPYTLD 75
Cdd:COG0238  16 VCRFCADKIEYIDYKDVELLKKFISERGKILPRRITGTCAKHQRQLATAIKRARHLALLPYVVD 79
 
Name Accession Description Interval E-value
RpsR COG0238
Ribosomal protein S18 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S18 ...
 12-75 6.21e-38

Ribosomal protein S18 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S18 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 440008  Cd Length: 81  Bit Score: 120.64  E-value: 6.21e-38
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489515693 12 VCQFCADKNAKIDYKSTQRLQKYITERGKILPRRISGTCAKHQRELTVAIKRARNIALLPYTLD 75
Cdd:COG0238  16 VCRFCADKIEYIDYKDVELLKKFISERGKILPRRITGTCAKHQRQLATAIKRARHLALLPYVVD 79
Ribosomal_S18 pfam01084
Ribosomal protein S18;
19-70 1.39e-26

Ribosomal protein S18;


Pssm-ID: 460054  Cd Length: 52  Bit Score: 91.28  E-value: 1.39e-26
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 489515693  19 KNAKIDYKSTQRLQKYITERGKILPRRISGTCAKHQRELTVAIKRARNIALL 70
Cdd:pfam01084  1 KNEYIDYKDVELLSQFITERGKILPRRITGLCAKHQRKLAKAIKRARHLALL 52
S18 TIGR00165
ribosomal protein S18; This ribosomal small subunit protein is found in all eubacteria so far, ...
 12-75 3.77e-25

ribosomal protein S18; This ribosomal small subunit protein is found in all eubacteria so far, as well as in chloroplasts. YER050C from Saccharomyces cerevisiae and a related protein from Caenorhabditis elegans appear to be homologous and may represent mitochondrial forms. The trusted cutoff is set high enough that these two candidate S18 proteins are not categorized automatically. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 272937  Cd Length: 70  Bit Score: 88.25  E-value: 3.77e-25
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489515693  12 VCQFCADKNAKIDYKSTQRLQKYITERGKILPRRISGTCAKHQRELTVAIKRARNIALLPYTLD 75
Cdd:TIGR00165  7 YCRFTAEGIQFIDYKDLDLLKKFISERGKILPRRITGTSAKYQRRLAVAIKRARYLALLPYVKD 70
rps18 CHL00077
ribosomal protein S18
 22-72 1.87e-17

ribosomal protein S18


Pssm-ID: 177016 [Multi-domain]  Cd Length: 86  Bit Score: 69.23  E-value: 1.87e-17
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|.
gi 489515693 22 KIDYKSTQRLQKYITERGKILPRRISGTCAKHQRELTVAIKRARNIALLPY 72
Cdd:CHL00077 27 RIDYKNMSLLSRFISEQGKILSRRVTRLTLKQQRLITKAIKQARILSLLPF 77
 
Name Accession Description Interval E-value
RpsR COG0238
Ribosomal protein S18 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S18 ...
 12-75 6.21e-38

Ribosomal protein S18 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S18 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 440008  Cd Length: 81  Bit Score: 120.64  E-value: 6.21e-38
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489515693 12 VCQFCADKNAKIDYKSTQRLQKYITERGKILPRRISGTCAKHQRELTVAIKRARNIALLPYTLD 75
Cdd:COG0238  16 VCRFCADKIEYIDYKDVELLKKFISERGKILPRRITGTCAKHQRQLATAIKRARHLALLPYVVD 79
Ribosomal_S18 pfam01084
Ribosomal protein S18;
19-70 1.39e-26

Ribosomal protein S18;


Pssm-ID: 460054  Cd Length: 52  Bit Score: 91.28  E-value: 1.39e-26
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 489515693  19 KNAKIDYKSTQRLQKYITERGKILPRRISGTCAKHQRELTVAIKRARNIALL 70
Cdd:pfam01084  1 KNEYIDYKDVELLSQFITERGKILPRRITGLCAKHQRKLAKAIKRARHLALL 52
S18 TIGR00165
ribosomal protein S18; This ribosomal small subunit protein is found in all eubacteria so far, ...
 12-75 3.77e-25

ribosomal protein S18; This ribosomal small subunit protein is found in all eubacteria so far, as well as in chloroplasts. YER050C from Saccharomyces cerevisiae and a related protein from Caenorhabditis elegans appear to be homologous and may represent mitochondrial forms. The trusted cutoff is set high enough that these two candidate S18 proteins are not categorized automatically. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 272937  Cd Length: 70  Bit Score: 88.25  E-value: 3.77e-25
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489515693  12 VCQFCADKNAKIDYKSTQRLQKYITERGKILPRRISGTCAKHQRELTVAIKRARNIALLPYTLD 75
Cdd:TIGR00165  7 YCRFTAEGIQFIDYKDLDLLKKFISERGKILPRRITGTSAKYQRRLAVAIKRARYLALLPYVKD 70
rps18 CHL00077
ribosomal protein S18
 22-72 1.87e-17

ribosomal protein S18


Pssm-ID: 177016 [Multi-domain]  Cd Length: 86  Bit Score: 69.23  E-value: 1.87e-17
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|.
gi 489515693 22 KIDYKSTQRLQKYITERGKILPRRISGTCAKHQRELTVAIKRARNIALLPY 72
Cdd:CHL00077 27 RIDYKNMSLLSRFISEQGKILSRRVTRLTLKQQRLITKAIKQARILSLLPF 77
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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