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Conserved domains on  [gi|489496454|ref|WP_003401370|]
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MULTISPECIES: allophanate hydrolase subunit 1 [Mycobacterium]

Protein Classification

allophanate hydrolase subunit 1( domain architecture ID 10005226)

allophanate hydrolase subunit 1 (AHS1) converts allophanate to ammonium and carbon dioxide, and is essential for utilization of urea as a nitrogen source in bacteria

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PxpB COG2049
5-oxoprolinase subunit B/Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]; ...
8-210 2.19e-71

5-oxoprolinase subunit B/Allophanate hydrolase subunit 1 [Amino acid transport and metabolism];


:

Pssm-ID: 441652  Cd Length: 229  Bit Score: 216.54  E-value: 2.19e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489496454   8 TVLDYGDHALMLQCDSTAD------AMAWTDALRAAALPGVVDIVAASRTVLVKLDAPR--YQGVtRQRLRRLRVTPEAV 79
Cdd:COG2049    6 RILPAGDRALLVEFGDEIDlelnrrVLALAAALRAAPLPGVVEVVPAYRSLLVHFDPLVidPAAL-AARLRALLAELDAA 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489496454  80 AAADHRCdLVIDVVYD---GPDLAEVARCTGLTTAAVINAHTATGWRAGFSGSAPGFAYLIDGDPSLRVPRRPERRTSMP 156
Cdd:COG2049   85 AEVPSRL-VEIPVCYDgefGPDLEEVARHNGLSVEEVIALHTAAEYRVYMLGFAPGFPYLGGLDPRLATPRRATPRTRVP 163
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 489496454 157 PGSVALADGFSAIYPSQAPSDWQIIGHTDAVLWDVDRPQPALLTPGMWVQFRAA 210
Cdd:COG2049  164 AGSVGIAGAQTGIYPLESPGGWQLIGRTPLPLFDPDREPPALLRPGDRVRFVPI 217
 
Name Accession Description Interval E-value
PxpB COG2049
5-oxoprolinase subunit B/Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]; ...
8-210 2.19e-71

5-oxoprolinase subunit B/Allophanate hydrolase subunit 1 [Amino acid transport and metabolism];


Pssm-ID: 441652  Cd Length: 229  Bit Score: 216.54  E-value: 2.19e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489496454   8 TVLDYGDHALMLQCDSTAD------AMAWTDALRAAALPGVVDIVAASRTVLVKLDAPR--YQGVtRQRLRRLRVTPEAV 79
Cdd:COG2049    6 RILPAGDRALLVEFGDEIDlelnrrVLALAAALRAAPLPGVVEVVPAYRSLLVHFDPLVidPAAL-AARLRALLAELDAA 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489496454  80 AAADHRCdLVIDVVYD---GPDLAEVARCTGLTTAAVINAHTATGWRAGFSGSAPGFAYLIDGDPSLRVPRRPERRTSMP 156
Cdd:COG2049   85 AEVPSRL-VEIPVCYDgefGPDLEEVARHNGLSVEEVIALHTAAEYRVYMLGFAPGFPYLGGLDPRLATPRRATPRTRVP 163
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 489496454 157 PGSVALADGFSAIYPSQAPSDWQIIGHTDAVLWDVDRPQPALLTPGMWVQFRAA 210
Cdd:COG2049  164 AGSVGIAGAQTGIYPLESPGGWQLIGRTPLPLFDPDREPPALLRPGDRVRFVPI 217
AHS1 smart00796
Allophanate hydrolase subunit 1; This domain represents subunit 1 of allophanate hydrolase ...
7-197 3.38e-68

Allophanate hydrolase subunit 1; This domain represents subunit 1 of allophanate hydrolase (AHS1).


Pssm-ID: 214820  Cd Length: 201  Bit Score: 207.37  E-value: 3.38e-68
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489496454     7 CTVLDYGDHALMLQC------DSTADAMAWTDALRAAALPGVVDIVAASRTVLVKLDAPR-YQGVTRQRLRRLRVTPEAV 79
Cdd:smart00796   1 MRIRPAGDRALLVEFgdeidlALNRRVLALARALRAAPLPGVVELVPGYRSLLVHFDPLViDPAALLARLRALEALPLAE 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489496454    80 AAADHRCDLVIDVVYD---GPDLAEVARCTGLTTAAVINAHTATGWRAGFSGSAPGFAYLIDGDPSLRVPRRPERRTSMP 156
Cdd:smart00796  81 ALEVPGRIIEIPVCYGgefGPDLEFVARHNGLSVDEVIRLHSAAEYRVYMLGFAPGFPYLGGLDPRLATPRRSTPRTRVP 160
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|.
gi 489496454   157 PGSVALADGFSAIYPSQAPSDWQIIGHTDAVLWDVDRPQPA 197
Cdd:smart00796 161 AGSVGIAGAQTGIYPLESPGGWQLIGRTPLPLFDPDREPPA 201
CT_C_D pfam02682
Carboxyltransferase domain, subdomain C and D; Urea carboxylase (UC) catalyzes a two-step, ...
8-199 6.43e-61

Carboxyltransferase domain, subdomain C and D; Urea carboxylase (UC) catalyzes a two-step, ATP- and biotin-dependent carboxylation reaction of urea. It is composed of biotin carboxylase (BC), carboxyltransferase (CT), and biotin carboxyl carrier protein (BCCP) domains. The CT domain of UC consists of four subdomains, named A, B, C and D. This domain covers the C and D subdomains of the CT domain. This domain covers the whole length of kipI (kinase A inhibitor) from Bacillus subtilis. It can also be found in S. cerevisiae urea amidolyase Dur1,2, which is a multifunctional biotin-dependent enzyme with domains for urea carboxylase and allophanate (urea carboxylate) hydrolase activity.


Pssm-ID: 426925  Cd Length: 201  Bit Score: 188.92  E-value: 6.43e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489496454    8 TVLDYGDHALMLQCDSTAD------AMAWTDALRAAALPGVVDIVAASRTVLVKLDAPRY-QGVTRQRLRRLRVTPEAVA 80
Cdd:pfam02682   1 RIRPAGDRALLVEFGDEIDlalnrrVLALAAALRAAPLPGVVEVVPGYRSLLVHYDPLVTdLAALEARLRALLAALEAAA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489496454   81 AADHRCdLVIDVVYD---GPDLAEVARCTGLTTAAVINAHTATGWRAGFSGSAPGFAYLIDGDPSLRVPRRPERRTSMPP 157
Cdd:pfam02682  81 APGGRL-IEIPVCYDgefGPDLAEVAAHNGLSVEEVIRLHSAAEYRVYFLGFAPGFPYLGGLDPRLAVPRRATPRTRVPA 159
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 489496454  158 GSVALADGFSAIYPSQAPSDWQIIGHTDAVLWDVDRPQPALL 199
Cdd:pfam02682 160 GSVGIAGRQTGIYPLESPGGWQLIGRTPLPLFDPDRDPPALL 201
TIGR00370 TIGR00370
sensor histidine kinase inhibitor, KipI family; [Hypothetical proteins, Conserved]
13-207 1.35e-26

sensor histidine kinase inhibitor, KipI family; [Hypothetical proteins, Conserved]


Pssm-ID: 129467  Cd Length: 202  Bit Score: 101.08  E-value: 1.35e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489496454   13 GDHALMLQCDSTA----DAMAWTDALRAAALPGVVDIVAASRTVLVKLDaprYQGVTRQRLRRLRVTPEAVAAADHRCDL 88
Cdd:TIGR00370   2 GESAVVIRLGPPIneqvQGIVWAAAAYLEEQPGFVECIPGMNNLTVFYD---MYEVYKHLPQRLSSPWEEVKDYEVNRRI 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489496454   89 V-IDVVYDG---PDLAEVARCTGLTTAAVINAHTATGWRAGFSGSAPGFAYLIDGDPSLRVPRRPERRTSMPPGSVALAD 164
Cdd:TIGR00370  79 IeIPVCYGGefgPDLEEVAKINQLSPEEVIDIHSNGEYVVYMLGFQPGFPYLGGLPERLHTPRRASPRPSVPAGSVGIGG 158
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 489496454  165 GFSAIYPSQAPSDWQIIGHTDAVLWDVDRPQPALLTPGMWVQF 207
Cdd:TIGR00370 159 LQTGVYPISTPGGWQLIGKTPLALFDPQENPPTLLRAGDIVKF 201
 
Name Accession Description Interval E-value
PxpB COG2049
5-oxoprolinase subunit B/Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]; ...
8-210 2.19e-71

5-oxoprolinase subunit B/Allophanate hydrolase subunit 1 [Amino acid transport and metabolism];


Pssm-ID: 441652  Cd Length: 229  Bit Score: 216.54  E-value: 2.19e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489496454   8 TVLDYGDHALMLQCDSTAD------AMAWTDALRAAALPGVVDIVAASRTVLVKLDAPR--YQGVtRQRLRRLRVTPEAV 79
Cdd:COG2049    6 RILPAGDRALLVEFGDEIDlelnrrVLALAAALRAAPLPGVVEVVPAYRSLLVHFDPLVidPAAL-AARLRALLAELDAA 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489496454  80 AAADHRCdLVIDVVYD---GPDLAEVARCTGLTTAAVINAHTATGWRAGFSGSAPGFAYLIDGDPSLRVPRRPERRTSMP 156
Cdd:COG2049   85 AEVPSRL-VEIPVCYDgefGPDLEEVARHNGLSVEEVIALHTAAEYRVYMLGFAPGFPYLGGLDPRLATPRRATPRTRVP 163
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 489496454 157 PGSVALADGFSAIYPSQAPSDWQIIGHTDAVLWDVDRPQPALLTPGMWVQFRAA 210
Cdd:COG2049  164 AGSVGIAGAQTGIYPLESPGGWQLIGRTPLPLFDPDREPPALLRPGDRVRFVPI 217
AHS1 smart00796
Allophanate hydrolase subunit 1; This domain represents subunit 1 of allophanate hydrolase ...
7-197 3.38e-68

Allophanate hydrolase subunit 1; This domain represents subunit 1 of allophanate hydrolase (AHS1).


Pssm-ID: 214820  Cd Length: 201  Bit Score: 207.37  E-value: 3.38e-68
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489496454     7 CTVLDYGDHALMLQC------DSTADAMAWTDALRAAALPGVVDIVAASRTVLVKLDAPR-YQGVTRQRLRRLRVTPEAV 79
Cdd:smart00796   1 MRIRPAGDRALLVEFgdeidlALNRRVLALARALRAAPLPGVVELVPGYRSLLVHFDPLViDPAALLARLRALEALPLAE 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489496454    80 AAADHRCDLVIDVVYD---GPDLAEVARCTGLTTAAVINAHTATGWRAGFSGSAPGFAYLIDGDPSLRVPRRPERRTSMP 156
Cdd:smart00796  81 ALEVPGRIIEIPVCYGgefGPDLEFVARHNGLSVDEVIRLHSAAEYRVYMLGFAPGFPYLGGLDPRLATPRRSTPRTRVP 160
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|.
gi 489496454   157 PGSVALADGFSAIYPSQAPSDWQIIGHTDAVLWDVDRPQPA 197
Cdd:smart00796 161 AGSVGIAGAQTGIYPLESPGGWQLIGRTPLPLFDPDREPPA 201
CT_C_D pfam02682
Carboxyltransferase domain, subdomain C and D; Urea carboxylase (UC) catalyzes a two-step, ...
8-199 6.43e-61

Carboxyltransferase domain, subdomain C and D; Urea carboxylase (UC) catalyzes a two-step, ATP- and biotin-dependent carboxylation reaction of urea. It is composed of biotin carboxylase (BC), carboxyltransferase (CT), and biotin carboxyl carrier protein (BCCP) domains. The CT domain of UC consists of four subdomains, named A, B, C and D. This domain covers the C and D subdomains of the CT domain. This domain covers the whole length of kipI (kinase A inhibitor) from Bacillus subtilis. It can also be found in S. cerevisiae urea amidolyase Dur1,2, which is a multifunctional biotin-dependent enzyme with domains for urea carboxylase and allophanate (urea carboxylate) hydrolase activity.


Pssm-ID: 426925  Cd Length: 201  Bit Score: 188.92  E-value: 6.43e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489496454    8 TVLDYGDHALMLQCDSTAD------AMAWTDALRAAALPGVVDIVAASRTVLVKLDAPRY-QGVTRQRLRRLRVTPEAVA 80
Cdd:pfam02682   1 RIRPAGDRALLVEFGDEIDlalnrrVLALAAALRAAPLPGVVEVVPGYRSLLVHYDPLVTdLAALEARLRALLAALEAAA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489496454   81 AADHRCdLVIDVVYD---GPDLAEVARCTGLTTAAVINAHTATGWRAGFSGSAPGFAYLIDGDPSLRVPRRPERRTSMPP 157
Cdd:pfam02682  81 APGGRL-IEIPVCYDgefGPDLAEVAAHNGLSVEEVIRLHSAAEYRVYFLGFAPGFPYLGGLDPRLAVPRRATPRTRVPA 159
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 489496454  158 GSVALADGFSAIYPSQAPSDWQIIGHTDAVLWDVDRPQPALL 199
Cdd:pfam02682 160 GSVGIAGRQTGIYPLESPGGWQLIGRTPLPLFDPDRDPPALL 201
TIGR00370 TIGR00370
sensor histidine kinase inhibitor, KipI family; [Hypothetical proteins, Conserved]
13-207 1.35e-26

sensor histidine kinase inhibitor, KipI family; [Hypothetical proteins, Conserved]


Pssm-ID: 129467  Cd Length: 202  Bit Score: 101.08  E-value: 1.35e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489496454   13 GDHALMLQCDSTA----DAMAWTDALRAAALPGVVDIVAASRTVLVKLDaprYQGVTRQRLRRLRVTPEAVAAADHRCDL 88
Cdd:TIGR00370   2 GESAVVIRLGPPIneqvQGIVWAAAAYLEEQPGFVECIPGMNNLTVFYD---MYEVYKHLPQRLSSPWEEVKDYEVNRRI 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489496454   89 V-IDVVYDG---PDLAEVARCTGLTTAAVINAHTATGWRAGFSGSAPGFAYLIDGDPSLRVPRRPERRTSMPPGSVALAD 164
Cdd:TIGR00370  79 IeIPVCYGGefgPDLEEVAKINQLSPEEVIDIHSNGEYVVYMLGFQPGFPYLGGLPERLHTPRRASPRPSVPAGSVGIGG 158
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 489496454  165 GFSAIYPSQAPSDWQIIGHTDAVLWDVDRPQPALLTPGMWVQF 207
Cdd:TIGR00370 159 LQTGVYPISTPGGWQLIGKTPLALFDPQENPPTLLRAGDIVKF 201
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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