|
Name |
Accession |
Description |
Interval |
E-value |
| PRK09641 |
PRK09641 |
RNA polymerase sigma factor SigW; Provisional |
1-187 |
4.01e-130 |
|
RNA polymerase sigma factor SigW; Provisional
Pssm-ID: 182012 [Multi-domain] Cd Length: 187 Bit Score: 362.48 E-value: 4.01e-130
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 1 MEMMIKKRIKQVKKGDQDAFADIVDIYKDKIYQLCYRMLGNVHEAEDIAQEAFIRAYVNIDSFDINRKFSTWLYRIATNL 80
Cdd:PRK09641 1 MDLLIKRLIKQVKKGDQNAFAELVDLYKDKIYQLCYRMLGNRHEAEDAAQEAFIRAYVNIDSYDINRKFSTWLYRIATNL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 81 TIDRIRKKKPDYYLDAEVAGTEGLTMYSQIVADGVLPEDAVVSLELSNTIQQKILKLPDKYRTVIVLKYIDELSLIEIGE 160
Cdd:PRK09641 81 TIDRLRKRKPDYYLDAEVAGTEGLTMYSQLAADDALPEEQVVSLELQETIQEAILQLPEKYRTVIVLKYIEDLSLKEISE 160
|
170 180
....*....|....*....|....*..
gi 489327667 161 ILNIPVGTVKTRIHRGREALRKQLRDL 187
Cdd:PRK09641 161 ILDLPVGTVKTRIHRGREALRKQLRHL 187
|
|
| SigW_bacill |
TIGR02948 |
RNA polymerase sigma-W factor; This sigma factor is restricted to certain lineages of the ... |
1-187 |
6.69e-119 |
|
RNA polymerase sigma-W factor; This sigma factor is restricted to certain lineages of the order Bacillales.
Pssm-ID: 131993 [Multi-domain] Cd Length: 187 Bit Score: 334.17 E-value: 6.69e-119
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 1 MEMMIKKRIKQVKKGDQDAFADIVDIYKDKIYQLCYRMLGNVHEAEDIAQEAFIRAYVNIDSFDINRKFSTWLYRIATNL 80
Cdd:TIGR02948 1 MDSIIKKRIKEVRKGDENAFADLVDLYKDKIYQLCYRMLGNVHEAEDVAQEAFIRAYTNIDTYDIQRKFSTWLYRIATNL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 81 TIDRIRKKKPDYYLDAEVAGTEGLTMYSQIVADGVLPEDAVVSLELSNTIQQKILKLPDKYRTVIVLKYIDELSLIEIGE 160
Cdd:TIGR02948 81 TIDRLRKRKPDFYLDDEVQGTDGLTMESQLAADEAPPEDQVISLELRDTIQQEIQALPPKYRMVIVLKYMEDLSLKEISE 160
|
170 180
....*....|....*....|....*..
gi 489327667 161 ILNIPVGTVKTRIHRGREALRKQLRDL 187
Cdd:TIGR02948 161 ILDLPVGTVKTRIHRGREALRKQLRHL 187
|
|
| RpoE |
COG1595 |
DNA-directed RNA polymerase specialized sigma subunit, sigma24 family [Transcription]; ... |
9-186 |
1.38e-60 |
|
DNA-directed RNA polymerase specialized sigma subunit, sigma24 family [Transcription]; DNA-directed RNA polymerase specialized sigma subunit, sigma24 family is part of the Pathway/BioSystem: RNA polymerase
Pssm-ID: 441203 [Multi-domain] Cd Length: 181 Bit Score: 186.35 E-value: 1.38e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 9 IKQVKKGDQDAFADIVDIYKDKIYQLCYRMLGNVHEAEDIAQEAFIRAYVNIDSFDINRKFSTWLYRIATNLTIDRIRKK 88
Cdd:COG1595 8 LERLRAGDEAAFEELYERYRPRLYRYARRLLGDRADAEDLVQETFLRLWRKLDSFRGRGSFRAWLYRIARNLAIDHLRKR 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 89 KPDYYLDAEVAgtegltmySQIVADGVLPEDAVVSLELSNTIQQKILKLPDKYRTVIVLKYIDELSLIEIGEILNIPVGT 168
Cdd:COG1595 88 RRRRELLDELA--------EELPDEAADPEEALEAEELLEALLAALERLPPRQREVLVLRYLEGLSYAEIAEILGISEGT 159
|
170
....*....|....*...
gi 489327667 169 VKTRIHRGREALRKQLRD 186
Cdd:COG1595 160 VKSRLSRARKKLREALEE 177
|
|
| PRK09652 |
PRK09652 |
RNA polymerase sigma factor RpoE; Provisional |
12-187 |
9.14e-54 |
|
RNA polymerase sigma factor RpoE; Provisional
Pssm-ID: 236608 [Multi-domain] Cd Length: 182 Bit Score: 169.22 E-value: 9.14e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 12 VKKGDQDAFADIVDIYKDKIYQLCYRMLGNVHEAEDIAQEAFIRAYVNIDSFDINRKFSTWLYRIATNLTIDRIRKKK-- 89
Cdd:PRK09652 4 VQRGDRAAFALLVRRYQPRVKRLLSRLTRDPADAEDLVQETFIKAYRALHSFRGGAAFYTWLYRIARNTAINYLRKQGrr 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 90 -PDYYLDAEVAGTEGLtmySQIVADGVLPEDAVVSLELSNTIQQKILKLPDKYRTVIVLKYIDELSLIEIGEILNIPVGT 168
Cdd:PRK09652 84 pPASDVDAEEAEDFDL---ADALRDISTPENELLSAELEQRVRAAIESLPEELRTAITLREIEGLSYEEIAEIMGCPIGT 160
|
170
....*....|....*....
gi 489327667 169 VKTRIHRGREALRKQLRDL 187
Cdd:PRK09652 161 VRSRIFRAREALRAKLQPL 179
|
|
| sigma70-ECF |
TIGR02937 |
RNA polymerase sigma factor, sigma-70 family; This model encompasses all varieties of the ... |
18-184 |
4.81e-43 |
|
RNA polymerase sigma factor, sigma-70 family; This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.
Pssm-ID: 274357 [Multi-domain] Cd Length: 158 Bit Score: 140.95 E-value: 4.81e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 18 DAFADIVDIYKDKIYQLCYRMLGNVHEAEDIAQEAFIRAYVNIDSFDINRKFSTWLYRIATNLTIDRIRKKKPDYYLDAE 97
Cdd:TIGR02937 1 EAFEELYERYLPLVYRYARRYLGDDADAEDLVQEAFLKLLEALDRFDPEGSFKAWLFRIARNLILDYLRRKRRLRRELDL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 98 VAgtegltmysQIVADGVLPEDAVVSLELSNTIQQKILKLPDKYRTVIVLKYIDELSLIEIGEILNIPVGTVKTRIHRGR 177
Cdd:TIGR02937 81 LE---------ELLDSDPSPEEELEQEEEREALREALEKLPEREREVLVLRYLEGLSYKEIAEILGISVGTVKRRLKRAR 151
|
....*..
gi 489327667 178 EALRKQL 184
Cdd:TIGR02937 152 KKLRELL 158
|
|
| PRK11924 |
PRK11924 |
RNA polymerase sigma factor; Provisional |
14-186 |
7.27e-42 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183384 [Multi-domain] Cd Length: 179 Bit Score: 138.57 E-value: 7.27e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 14 KGDQDAFADIVDIYKDKIYQLCYRMLGNVHEAEDIAQEAFIRAYVNIDSFDINRKFSTWLYRIATNLTIDRIRKKKPdyy 93
Cdd:PRK11924 9 TGDKEAFSELFRPHAPDLLRYARRQLGDRALAEDAVQEAFLRAWRKADLFNGKGSARTWLLTIARNVCYDLLRRRRR--- 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 94 ldaEVAGTEGLTMYSQIVADGVLPEDAVVSLELSNTIQQKILKLPDKYRTVIVLKYIDELSLIEIGEILNIPVGTVKTRI 173
Cdd:PRK11924 86 ---EKAVLSDDALEPEFAETAETPEAALLAKDDLARIDRCLDALPVKQREVFLLRYVEGLSYREIAEILGVPVGTVKSRL 162
|
170
....*....|...
gi 489327667 174 HRGREALRKQLRD 186
Cdd:PRK11924 163 RRARQLLRECLEA 175
|
|
| PRK09638 |
PRK09638 |
RNA polymerase sigma factor SigY; Reviewed |
1-186 |
2.71e-38 |
|
RNA polymerase sigma factor SigY; Reviewed
Pssm-ID: 182010 [Multi-domain] Cd Length: 176 Bit Score: 129.37 E-value: 2.71e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 1 MEMMIKKRIKQVKKGDQDAFADIVDIYKDKIYQLCYRMLGNVHEAEDIAQEAFIRAYVNIDSFDINRKFSTWLYRIATNL 80
Cdd:PRK09638 1 MQMDEKELIQKAKKGDDAALTTLFQQHYSFLYKYLLKLTLDPDLAEDLVQETMLKAIENLSSFQGRSKFSTWLISIASRL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 81 TIDRIRKKKPDYYLDAevagtegltMYSQIVADGVLPEDAVVSLELSnTIQQKILKLPDKYRTVIVLKYIDELSLIEIGE 160
Cdd:PRK09638 81 YKDHLRKQKREKLRLQ---------RAKEETLRKEKWEAAIKGAEWS-EMLDALSKLDPEFRAPVILKHYYGYTYEEIAK 150
|
170 180
....*....|....*....|....*.
gi 489327667 161 ILNIPVGTVKTRIHRGREALRKQLRD 186
Cdd:PRK09638 151 MLNIPEGTVKSRVHHGIKQLRKEWGQ 176
|
|
| PRK11922 |
PRK11922 |
RNA polymerase sigma factor; Provisional |
9-184 |
1.68e-37 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237024 [Multi-domain] Cd Length: 231 Bit Score: 129.31 E-value: 1.68e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 9 IKQVKKGDQDAFADIVDIYKDKIYQLCYRMLGNVHEAEDIAQEAFIRAYVNIDSFDINRKFSTWLYRIATNLTIDRIRKK 88
Cdd:PRK11922 21 VARVLAGDEAAFEALMRRHNRRLYRTARAILRNDAEAEDVVQEAYLRAFRALGTFRGDASLSTWLSRIVLNEALGRLRRR 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 89 KPDYYLD-AEVAGTEGLTMYSQIVADGVLPEDAVVSLELSNTIQQKILKLPDKYRTVIVLKYIDELSLIEIGEILNIPVG 167
Cdd:PRK11922 101 RRLVNLAeMVMASTIAGGERTPLADPAEDPERAAARREIRALLERAIDALPDAFRAVFVLRVVEELSVEETAQALGLPEE 180
|
170
....*....|....*..
gi 489327667 168 TVKTRIHRGREALRKQL 184
Cdd:PRK11922 181 TVKTRLHRARRLLRESL 197
|
|
| PRK05602 |
PRK05602 |
RNA polymerase sigma factor; Reviewed |
9-187 |
2.03e-34 |
|
RNA polymerase sigma factor; Reviewed
Pssm-ID: 235530 [Multi-domain] Cd Length: 186 Bit Score: 119.76 E-value: 2.03e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 9 IKQVKKGDQDAFADIVDIYKDKIYQLCYRMLGNVHEAEDIAQEAFIRAYVNIDSFDI-NRKFSTWLYRIATNLTIDRIRK 87
Cdd:PRK05602 11 LARVAAGDPAAFRVLVARKLPRLLALATRMLGDPAEAEDVAQETFLRIWKQAPSWRPgEARFDTWLHRVVLNLCYDRLRR 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 88 KKpdyyldaEVAgTEGLtmySQIVADGVLPEDAVVSLELSNTIQQKILKLPDKYRTVIVLKYIDELSLIEIGEILNIPVG 167
Cdd:PRK05602 91 RR-------EVP-VEDA---PDVPDPAPGPDAGLEARQRARRVEQALAALPERQREAIVLQYYQGLSNIEAAAVMDISVD 159
|
170 180
....*....|....*....|
gi 489327667 168 TVKTRIHRGREALRKQLRDL 187
Cdd:PRK05602 160 ALESLLARGRRALRAQLADL 179
|
|
| algU |
PRK11923 |
RNA polymerase sigma factor AlgU; Provisional |
9-187 |
2.75e-34 |
|
RNA polymerase sigma factor AlgU; Provisional
Pssm-ID: 171347 [Multi-domain] Cd Length: 193 Bit Score: 119.91 E-value: 2.75e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 9 IKQVKKGDQDAFADIVDIYKDKIYQLCYRMLGNVHEAEDIAQEAFIRAYVNIDSFDINRKFSTWLYRIATNLTIDRI--- 85
Cdd:PRK11923 11 VERVQRGDKRAFDLLVLKYQHKILGLIVRFVHDTAEAQDVAQEAFIKAYRALGNFRGDSAFYTWLYRIAINTAKNHLvsr 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 86 RKKKPDYYLDAEVA----GTEGLTmysqivaDGVLPEDAVVSLELSNTIQQKILKLPDKYRTVIVLKYIDELSLIEIGEI 161
Cdd:PRK11923 91 GRRPPDSDVSSEDAefydGDHALK-------DIESPERALLRDEIEGTVHRTIQQLPEDLRTALTLREFDGLSYEDIASV 163
|
170 180
....*....|....*....|....*.
gi 489327667 162 LNIPVGTVKTRIHRGREALRKQLRDL 187
Cdd:PRK11923 164 MQCPVGTVRSRIFRAREAIDKALQPL 189
|
|
| PRK09647 |
PRK09647 |
RNA polymerase sigma factor SigE; Reviewed |
22-184 |
6.58e-34 |
|
RNA polymerase sigma factor SigE; Reviewed
Pssm-ID: 236606 [Multi-domain] Cd Length: 203 Bit Score: 119.12 E-value: 6.58e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 22 DIVDIYKDKIYQLCYRMLGNVHEAEDIAQEAFIRAYVNIDSFDINrKFSTWLYRIATNLTIDRIRKKKPdyyLDAEVAGT 101
Cdd:PRK09647 32 ELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSLQNYQPG-TFEGWLHRITTNLFLDMVRRRAR---IRMEALPE 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 102 EgltmYSQIVADGVLPEDAVVSLELSNTIQQKILKLPDKYRTVIVLKYIDELSLIEIGEILNIPVGTVKTRIHRGREALR 181
Cdd:PRK09647 108 D----YDRVPGDEPNPEQIYHDARLDPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIAATLGVKLGTVRSRIHRGRQQLR 183
|
...
gi 489327667 182 KQL 184
Cdd:PRK09647 184 AAL 186
|
|
| SigE-fam_strep |
TIGR02983 |
RNA polymerase sigma-70 factor, sigma-E family; This group of similar sigma-70 factors ... |
17-184 |
1.91e-29 |
|
RNA polymerase sigma-70 factor, sigma-E family; This group of similar sigma-70 factors includes the sigE factor from Streptomyces coelicolor. The family appears to include a paralagous expansion in the Streptomycetes lineage, while related Actinomycetales have at most two representatives.
Pssm-ID: 132028 [Multi-domain] Cd Length: 162 Bit Score: 106.32 E-value: 1.91e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 17 QDAFADIVDIYKDKIYQLCYRMLGNVHEAEDIAQEAFIRAYVNIDSFDINRKFSTWLYRIATNLTIDRIRKKKPDYYLDA 96
Cdd:TIGR02983 5 EEEFTAFVAARYPRLLRTAYLLTGDPHEAEDLVQEALVRTYVRWDRIRDPDAPDAYVRRVLVNLARSRWRRRRLLELPTR 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 97 EVAGTEGltmysqivadgvlpEDAVVSLELSNTIQQKILKLPDKYRTVIVLKYIDELSLIEIGEILNIPVGTVKTRIHRG 176
Cdd:TIGR02983 85 ELPDAAA--------------PDPAPDVALRAALARALRRLPARQRAVVVLRYYEDLSEAQVAEALGISVGTVKSRLSRA 150
|
....*...
gi 489327667 177 REALRKQL 184
Cdd:TIGR02983 151 LARLRELL 158
|
|
| PRK09643 |
PRK09643 |
RNA polymerase sigma factor SigM; Reviewed |
15-187 |
3.37e-28 |
|
RNA polymerase sigma factor SigM; Reviewed
Pssm-ID: 236604 [Multi-domain] Cd Length: 192 Bit Score: 104.02 E-value: 3.37e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 15 GDQDAFADIVDIYKDKIYQLCYRMLGNVHEAEDIAQEAFIRAYVNIDSFDINRKFSTWLYRIATNLTIDRIRKKK--PDY 92
Cdd:PRK09643 24 GDRYAFGELFRRHHRRLWAVARRTSGTREDAADALQDAMLSAHRAAGSFRGDAAVSSWLHRIVVNACLDRLRRAKarPTV 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 93 YLD--AEVAGtegltmysqivadgvLPEDAVVSLELSNTIQQKILKLPDKYRTVIVLKYIDELSLIEIGEILNIPVGTVK 170
Cdd:PRK09643 104 PLDdvYPVAQ---------------LERDPTARVETALAVQRALMRLPVEQRAALVAVDMQGYSVADAARMLGVAEGTVK 168
|
170
....*....|....*..
gi 489327667 171 TRIHRGREALRKQLRDL 187
Cdd:PRK09643 169 SRCARGRARLAELLGYL 185
|
|
| PRK09415 |
PRK09415 |
RNA polymerase factor sigma C; Reviewed |
23-184 |
3.99e-28 |
|
RNA polymerase factor sigma C; Reviewed
Pssm-ID: 181835 [Multi-domain] Cd Length: 179 Bit Score: 103.67 E-value: 3.99e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 23 IVDIYKDKIYQLCYRMLGNVHEAEDIAQEAFIRAYVNIDSFDINRKFSTWLYRIATNLTIDRIRKkkpdyYLDAEVAGTE 102
Cdd:PRK09415 21 IMNEYGQEVLQLVYSYVKNKEVAEDLTQEIFVKCYKSLHTYKGKSSLKTWLYRIAINHCKDYLKS-----WHNKKVIVTE 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 103 GLTMYSQIVADgvLPEDAVVSLELSNTIQQKILKLPDKYRTVIVLKYIDELSLIEIGEILNIPVGTVKTRIHRGREALRK 182
Cdd:PRK09415 96 DIFTYMESQKE--SVEEEVIQNAEDERLASAVMSLPIKYREVIYLFYYEELSIKEIAEVTGVNENTVKTRLKKAKELLKK 173
|
..
gi 489327667 183 QL 184
Cdd:PRK09415 174 GL 175
|
|
| SigM_subfam |
TIGR02950 |
RNA polymerase sigma factor, SigM family; This family of RNA polymerase sigma factors is a ... |
27-185 |
5.56e-27 |
|
RNA polymerase sigma factor, SigM family; This family of RNA polymerase sigma factors is a member of the Sigma-70 subfamily (TIGR02937) and is restricted to certain lineages of the order Bacillales. This family encompasses at least two distinct sigma factors as two proteins are found in each of B. anthracis, B. subtilis subsp. subtilis str. 168, and B. lichiniformis (although these are not apparently the same two in each). One of these is designated as SigM in B. subtilis (Swiss_Prot:
Pssm-ID: 274361 [Multi-domain] Cd Length: 154 Bit Score: 99.84 E-value: 5.56e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 27 YKDKIYQLCYRMLGNVHEAEDIAQEAFIRAYVNIDSFDiNRKFSTWLYRIATNLTIDRIRKKKPDYYLDAEVAGTEGLTM 106
Cdd:TIGR02950 4 YMHDVFRYLYRLTKDKHLAEDLLQETFLKAYIHLHSFK-DSSIKPWLFRIARNAFIDWYRKDKKIQTIDDDAIGDLEQHP 82
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489327667 107 YSqivadgvLPEDAVVSLELSNTIQQKILKLPDKYRTVIVLKYIDELSLIEIGEILNIPVGTVKTRIHRGREALRKQLR 185
Cdd:TIGR02950 83 VE-------SPEHHLLIKIEQEEITHHLSRLPENYRTVLILREFKEFSYKEIAELLNLSLAKVKSNLFRARKELKKLLE 154
|
|
| PRK12543 |
PRK12543 |
RNA polymerase sigma factor; Provisional |
13-183 |
8.97e-27 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183582 [Multi-domain] Cd Length: 179 Bit Score: 100.19 E-value: 8.97e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 13 KKGDQDAFADIVDIYKDKIYQLCYRMLGNVHEAEDIAQEAFIRAYVNIDSFDINRKFSTWLYRIATNlTIDRIRKKKPDY 92
Cdd:PRK12543 2 LSGDQEAFSEIYDVTIQEVYKTVHFLVEDKQDVDDVVNEIYIQLWESLRKYDSNRPFRFWLIGLVIK-QIHSWRRKRWRR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 93 YLDAEVAgteglTMYSQIVAdgVLPEDAVVSLELSNTIQQKILKLPDKYRTVIVLKYIDELSLIEIGEILNIPVGTVKTR 172
Cdd:PRK12543 81 FRIFEKA-----EEQRKPVS--IDFSEDVLSKESNQELIELIHKLPYKLRQVIILRYLHDYSQEEIAQLLQIPIGTVKSR 153
|
170
....*....|.
gi 489327667 173 IHRGREALRKQ 183
Cdd:PRK12543 154 IHAALKKLRQK 164
|
|
| PRK12522 |
PRK12522 |
RNA polymerase sigma factor; Provisional |
23-184 |
3.11e-26 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183571 [Multi-domain] Cd Length: 173 Bit Score: 98.40 E-value: 3.11e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 23 IVDIYKDKIYQLCYRMLGNVHEAEDIAQEAFIRAYVNIDSFDINRKFSTWLYRIATNLTIDRIRKKK--PDYYLDAEVAG 100
Cdd:PRK12522 8 LIDIYKQQIYSLCYKLAKTKEDAEDIFQETWIKVFSSRHQLSYVENYKKWITTICVRTFYDFYRKKKrwKDRILDLFHKE 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 101 TEGLTMYSQivaDGVLPEDAVVSLElSNTIQQKILKLPDKYRTVIVLKYIDELSLIEIGEILNIPVGTVKTRIHRGREAL 180
Cdd:PRK12522 88 DGGEIEFAD---DVNISEEFIQKVE-AEMIREVIQLLNEKYKTVLVLYYYEQYSYKEMSEILNIPIGTVKYRLNYAKKQM 163
|
....
gi 489327667 181 RKQL 184
Cdd:PRK12522 164 REHL 167
|
|
| PRK12518 |
PRK12518 |
RNA polymerase sigma factor; Provisional |
9-184 |
3.80e-25 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237124 [Multi-domain] Cd Length: 175 Bit Score: 95.56 E-value: 3.80e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 9 IKQVKKGDQDAFADIVDIYKDKIYQLCYRMLGnVHEAEDIAQEAFIRAYVNIDSFDINRKFSTWLYRIATNLTIDRIRK- 87
Cdd:PRK12518 2 ILRCQRGDRQSFRQLYRRYQQKVRSTLYQLCG-RELLDDLVQEVFLRVWKGLPKLRNPAYFSTWLYRITWNVATDARRQf 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 88 -KKPDYyldaevagTEGLTMYSQIVADGVLPEdaVVSLELSNTIQQKILKLPDKYRTVIVLKYIDELSLIEIGEILNIPV 166
Cdd:PRK12518 81 aQRPSR--------IQDDSLNDQPSRPSDTPD--LMQLHYQDLVQQGLQTLSLEHRAVLVLHDLEDLPQKEIAEILNIPV 150
|
170
....*....|....*...
gi 489327667 167 GTVKTRIHRGREALRKQL 184
Cdd:PRK12518 151 GTVKSRLFYARRQLRKFL 168
|
|
| SigZ |
TIGR02959 |
RNA polymerase sigma factor, SigZ family; This family of RNA polymerase sigma factors is a ... |
36-186 |
5.25e-25 |
|
RNA polymerase sigma factor, SigZ family; This family of RNA polymerase sigma factors is a member of the Sigma-70 subfamily (TIGR02937). One of these is designated as SigZ in B. subtilis (Swiss_Prot: SIGZ_BACSU). Interestingly, this group has a very sporatic distribution, B. subtilis, for instance, being the only sequenced strain of Bacilli with a member. Dechloromonas aromatica RCB appears to have two of these sigma factors. A member appears on a plasmid found in Photobacterium profundum SS9 and Vibrio fischeri ES114 (where a second one is chromosomally encoded).
Pssm-ID: 132004 [Multi-domain] Cd Length: 170 Bit Score: 95.13 E-value: 5.25e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 36 YRMLGNVHEAEDIAQEAFIRAYVNIDSFDINRKFSTWLYRIATNLTIDRIRKKKPDYYLDAevagtegltmySQIVADGV 115
Cdd:TIGR02959 13 KSRVSDASDVEDLLQEVFIKIHRNLPSLKDGQKIQSWLYQIARNTIIDFYRSKSRSVELPE-----------SLLAADSA 81
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 489327667 116 LPEDAVVslELSNTIQQKILKLPDKYRTVIVLKYIDELSLIEIGEILNIPVGTVKTRIHRGREALRKQLRD 186
Cdd:TIGR02959 82 REETFVK--ELSQCIPPMIKELPDEYREAIRLTELEGLSQQEIAEKLGLSLSGAKSRVQRGRKKLKELLET 150
|
|
| PRK12519 |
PRK12519 |
RNA polymerase sigma factor; Provisional |
12-187 |
1.61e-24 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237125 [Multi-domain] Cd Length: 194 Bit Score: 94.74 E-value: 1.61e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 12 VKKGDQDAFADIVDIYKDKIYQLCYRMLGNVHEAEDIAQEAFIRAYVNIdSFDINR-KFSTWLYRIATNLTIDRIRKKKP 90
Cdd:PRK12519 23 LKAGQSAALGVLYDRHAGLVYGLALKILGNSQEAEDLTQEIFLSLWRKS-SYDPKRgSLSSYLLTLTRSRAIDRLRSRRS 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 91 DYYLdAEVAGTEGLTMysqivADGVLPEDAVVSLELSNTIQQKILKLPDKYRTVIVLKYIDELSLIEIGEILNIPVGTVK 170
Cdd:PRK12519 102 RQRL-LERWQQELLGE-----ASEDTPLEQASLAERSQRVQTALAQLPESQRQVLELAYYEGLSQSEIAKRLGIPLGTVK 175
|
170
....*....|....*..
gi 489327667 171 TRIHRGREALRKQLRDL 187
Cdd:PRK12519 176 ARARQGLLKLRELLQDL 192
|
|
| PRK08241 |
PRK08241 |
RNA polymerase subunit sigma-70; |
15-181 |
2.45e-24 |
|
RNA polymerase subunit sigma-70;
Pssm-ID: 236196 [Multi-domain] Cd Length: 339 Bit Score: 96.93 E-value: 2.45e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 15 GDQDAFADIVDIYKDKIYQLCYRMLGNVHEAEDIAQEAFIRAYVNIDSFDINRKFSTWLYRIATN--LTIDRIRKKKP-- 90
Cdd:PRK08241 16 GDRDAFAALVEPHRRELLAHCYRMLGSVHDAEDAVQETLLRAWRGYDRFEGRSSLRTWLYRIATNvcLDALEGRARRPlp 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 91 ----DYYLDAEVAGTE-----GLTMY--SQIVADGVLPEDAVV---SLELS--NTIQQkilkLPDKYRTVIVLKYIDELS 154
Cdd:PRK08241 96 tdlgAPAADPVDELVErpevpWLEPYpdALLDPAAADPAARVVareSVRLAfvAALQH----LPPRQRAVLILRDVLGWS 171
|
170 180
....*....|....*....|....*..
gi 489327667 155 LIEIGEILNIPVGTVKTRIHRGREALR 181
Cdd:PRK08241 172 AAEVAELLDTSVAAVNSALQRARATLA 198
|
|
| PRK12513 |
PRK12513 |
RNA polymerase sigma factor; Provisional |
14-184 |
1.06e-23 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183566 [Multi-domain] Cd Length: 194 Bit Score: 92.44 E-value: 1.06e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 14 KGDQDAFADIVDIYKDKIYQLCYRMLGNVHEAEDIAQEAFIRAYVNIDSFDINRKFSTWLYRIATNLTIDRIRKKKPDYY 93
Cdd:PRK12513 22 AGDAAAFEALYARHRTGLYRFLLRLARDRALAEDIFQETWLRVIRARAQYQPRARFRTWLYQIARNLLIDHWRRHGARQA 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 94 LDAEVAgtEGLTMYSqivADGVLPEDAVVSLELSNTIQQKILKLPDKYRTVIVLKYIDELSLIEIGEILNIPVGTVKTRI 173
Cdd:PRK12513 102 PSLDAD--EQLHALA---DDGAAPEQQLSLFRDRRRLQAALETLPDEQREVFLLREHGDLELEEIAELTGVPEETVKSRL 176
|
170
....*....|.
gi 489327667 174 HRGREALRKQL 184
Cdd:PRK12513 177 RYALQKLRELL 187
|
|
| Sig70_bacteroi1 |
TIGR02985 |
RNA polymerase sigma-70 factor, Bacteroides expansion family 1; This group of sigma factors ... |
18-184 |
1.11e-23 |
|
RNA polymerase sigma-70 factor, Bacteroides expansion family 1; This group of sigma factors are members of the sigma-70 family (TIGR02937) and are found primarily in the genus Bacteroides. This family appears to have resulted from a lineage-specific expansion as B. thetaiotaomicron VPI-5482, Bacteroides forsythus ATCC 43037, Bacteroides fragilis YCH46 and Bacteroides fragilis NCTC 9343 contain 25, 12, 24 and 23 members, respectively. There are currentlyonly two known members of this family outside of the Bacteroides, in Rhodopseudomonas and Bradyrhizobium.
Pssm-ID: 274376 [Multi-domain] Cd Length: 161 Bit Score: 91.47 E-value: 1.11e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 18 DAFADIVDIYKDKIYQLCYRMLGNVHEAEDIAQEAFIRAYVNIDSFDINRKFSTWLYRIATNLTIDRIRKKK-----PDY 92
Cdd:TIGR02985 1 EAFEQLYRRYYPKLCAFARRYVKDEEDAEDIVQDVFLKLWENRETLEISESIKAYLFTIVKNRCLNYLRHKQveekyQEE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 93 YLDAEVAGTEGLTMYSQIVADgvlpedavvslELSNTIQQKILKLPDKYRTVIVLKYIDELSLIEIGEILNIPVGTVKTR 172
Cdd:TIGR02985 81 LAEIEERELSEADPEEELEAK-----------ELEEIIEEAIEKLPEQCREIFILSRFEGLSNKEIAEELGISVKTVEYH 149
|
170
....*....|..
gi 489327667 173 IHRGREALRKQL 184
Cdd:TIGR02985 150 ITKALKFLRKEL 161
|
|
| PRK09639 |
PRK09639 |
RNA polymerase sigma factor SigX; Provisional |
16-184 |
1.17e-23 |
|
RNA polymerase sigma factor SigX; Provisional
Pssm-ID: 236602 [Multi-domain] Cd Length: 166 Bit Score: 91.55 E-value: 1.17e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 16 DQDAFADIVDIYKDKIYQLCYRMLGNVHEAEDIAQEAFIRAYVNidSFDINRKFSTWLYRIATNLTIDRIRKKKPDYyld 95
Cdd:PRK09639 1 SDETFEDLFEQYYPDVVQQIFYIVKDRTQAEDLAQEVFLRLYRS--DFKGIENEKGWLIKSARNVAYNYLRSEKRRR--- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 96 aevAGTEGLTMYSQIVADGvLPEDAVVSLELSNTIQQKILKLPDKYRTVIVLKYIDeLSLIEIGEILNIPVGTVKTRIHR 175
Cdd:PRK09639 76 ---ARILGEFQWQEVDNEP-SPEEIWIRKEEITKVQEVLAKMTERDRTVLLLRFSG-YSYKEIAEALGIKESSVGTTLAR 150
|
....*....
gi 489327667 176 GREALRKQL 184
Cdd:PRK09639 151 AKKKFRKIY 159
|
|
| PRK12514 |
PRK12514 |
RNA polymerase sigma factor; Provisional |
5-184 |
1.25e-22 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 105710 [Multi-domain] Cd Length: 179 Bit Score: 89.11 E-value: 1.25e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 5 IKKRIKQVKKGDQDAFADIVDIYKDKIYQLCYRMLGNVHEAEDIAQEAFIRAYVNIDSFDIN-RKFSTWLYRIATNLTID 83
Cdd:PRK12514 6 IEKLIVRVSLGDRDAFSSLYDATSAKLFGICLRVLKDRSEAEEALQDVYVKIWTKADRFAVSgLSPMTWLITIARNHAID 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 84 RIRKKKPdyyldaevaGTEGLTMYSQIVADGVLPEDAVVSLELSNTIQQKILKLPDKYRTVIVLKYIDELSLIEIGEILN 163
Cdd:PRK12514 86 RLRARKA---------VAVDIDEAHDLADPSPGPEAEVIAGDEGQRIDACLEELEKDRAAAVRRAYLEGLSYKELAERHD 156
|
170 180
....*....|....*....|.
gi 489327667 164 IPVGTVKTRIHRGREALRKQL 184
Cdd:PRK12514 157 VPLNTMRTWLRRSLLKLRECL 177
|
|
| PRK09637 |
PRK09637 |
RNA polymerase sigma factor SigZ; Provisional |
45-186 |
1.72e-22 |
|
RNA polymerase sigma factor SigZ; Provisional
Pssm-ID: 236601 [Multi-domain] Cd Length: 181 Bit Score: 88.89 E-value: 1.72e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 45 AEDIAQEAFIRAYVNIDSFDINRKFSTWLYRIATNLTIDRIRKKKPDYYLDAEVAGTEGltmysqivadgvlPEDAVVSL 124
Cdd:PRK09637 28 VDDLLQEVLIKTHSNLHSLKDGSSIKSWLYQIANNTIIDFYRKKNRSEELPDDLLFEDE-------------EREENAKK 94
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489327667 125 ELSNTIQQKILKLPDKYRTVIVLKYIDELSLIEIGEILNIPVGTVKTRIHRGREALRKQLRD 186
Cdd:PRK09637 95 ELAPCLRPFIDALPEKYAEALRLTELEGLSQKEIAEKLGLSLSGAKSRVQRGRVKLKELLEG 156
|
|
| PRK12538 |
PRK12538 |
RNA polymerase sigma factor; Provisional |
15-185 |
6.34e-22 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 139048 [Multi-domain] Cd Length: 233 Bit Score: 88.76 E-value: 6.34e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 15 GDQDAFADIVDIYKDKIYQLCYRMLGNVHEAEDIAQEAFIRAYVNIDSFDINR-KFSTWLYRIATNLTIDRIRKKKpdyy 93
Cdd:PRK12538 60 DDEAAFRLLVERHIDRAYAIALRIVGNRADAEDVVQDTMLKVWTHRGRWQHGRaKFSTWLYRVVSNRCIDLRRKPR---- 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 94 ldaevagTEGLTMYSQiVADGvlPEDAVVSL---ELSNTIQQKILKLPDKYRTVIVLKYIDELSLIEIGEILNIPVGTVK 170
Cdd:PRK12538 136 -------TENVDAVPE-VADG--KPDAVSVIernELSDLLEAAMQRLPEQQRIAVILSYHENMSNGEIAEVMDTTVAAVE 205
|
170
....*....|....*
gi 489327667 171 TRIHRGREALRKQLR 185
Cdd:PRK12538 206 SLLKRGRQQLRDLLR 220
|
|
| PRK12524 |
PRK12524 |
RNA polymerase sigma factor; Provisional |
30-184 |
1.05e-21 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183573 [Multi-domain] Cd Length: 196 Bit Score: 87.25 E-value: 1.05e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 30 KIYQLCYRMLGNVHEAEDIAQEAFIRAY-VNIDSFDINRKFSTWLYRIATNLTIDRIRKKKpdyyldaevAGTEGLTMYS 108
Cdd:PRK12524 38 RALAVATRVLGDRAEAEDVTQEAMLRLWrIAPDWRQGEARVSTWLYRVVCNLCTDRLRRRR---------RASVDLDDAP 108
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489327667 109 QIVADGVLPEDAVVSLELSNTIQQKILKLPDKYRTVIVLKYIDELSLIEIGEILNIPVGTVKTRIHRGREALRKQL 184
Cdd:PRK12524 109 EPADAAPGAEEALIEGDRMRALDAALAALPERQRQAVVLRHIEGLSNPEIAEVMEIGVEAVESLTARGKRALAALL 184
|
|
| PRK09645 |
PRK09645 |
ECF RNA polymerase sigma factor SigL; |
37-184 |
1.45e-21 |
|
ECF RNA polymerase sigma factor SigL;
Pssm-ID: 236605 [Multi-domain] Cd Length: 173 Bit Score: 86.29 E-value: 1.45e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 37 RMLGNVHEAEDIAQEAFIRAYVNIDSF-DINRKFSTWLYRIATNLTID--RIRKKKPdyyldaEVAGTEGLTMYSQIVAD 113
Cdd:PRK09645 28 RLTGDRARAEDVVQETLLRAWQHPEVLaDTGRSARAWLFTVARNLVIDerRSARARP------VEGGDDVLGVPEQSAPD 101
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 489327667 114 GVlpEDAVVSLELSNTIQQkilkLPDKYRTVIVLKYIDELSLIEIGEILNIPVGTVKTRIHRGREALRKQL 184
Cdd:PRK09645 102 EV--DRALDRLLVADALAQ----LSPEHRAVLVRSYYRGWSTAQIAADLGIPEGTVKSRLHYALRALRLAL 166
|
|
| SigX5 |
TIGR02960 |
RNA polymerase sigma-70 factor, TIGR02960 family; This group of sigma factors are members of ... |
15-184 |
1.34e-20 |
|
RNA polymerase sigma-70 factor, TIGR02960 family; This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family.
Pssm-ID: 132005 [Multi-domain] Cd Length: 324 Bit Score: 86.84 E-value: 1.34e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 15 GDQDAFADIVDIYKDKIYQLCYRMLGNVHEAEDIAQEAFIRAYVNIDSFDINRKFSTWLYRIATNLTIDRIRKKK----- 89
Cdd:TIGR02960 2 VDGAAFTALAEPHRRELLAHCYRMLGSLHEAEDLVQETLLRAWRARDRFEGRSSVRTWLYRIATNACLDALEARQrrprp 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 90 ---PDYYLDAEVAGTEG-----LTMYSQIVADGVLPE--DAVVSLELSNTIQ----QKILKLPDKYRTVIVLKYIDELSL 155
Cdd:TIGR02960 82 vglGAPSADGTAAASEAaevtwLEPLPDLTLDLDDPAaaDPSVAAGSRESVRlafvAAIQYLPPRQRAVLLLRDVLGWRA 161
|
170 180
....*....|....*....|....*....
gi 489327667 156 IEIGEILNIPVGTVKTRIHRGREALRKQL 184
Cdd:TIGR02960 162 AETAELLGTSTASVNSALQRARATLDEVG 190
|
|
| Sigma70_r2 |
pfam04542 |
Sigma-70 region 2; Region 2 of sigma-70 is the most conserved region of the entire protein. ... |
23-89 |
4.29e-20 |
|
Sigma-70 region 2; Region 2 of sigma-70 is the most conserved region of the entire protein. All members of this class of sigma-factor contain region 2. The high conservation is due to region 2 containing both the -10 promoter recognition helix and the primary core RNA polymerase binding determinant. The core binding helix, interacts with the clamp domain of the largest polymerase subunit, beta prime. The aromatic residues of the recognition helix, found at the C-terminus of this domain are though to mediate strand separation, thereby allowing transcription initiation.
Pssm-ID: 427998 [Multi-domain] Cd Length: 71 Bit Score: 79.55 E-value: 4.29e-20
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489327667 23 IVDIYKDKIYQLCYRMLGNVHEAEDIAQEAFIRAYVNIDSFDINR--KFSTWLYRIATNLTIDRIRKKK 89
Cdd:pfam04542 1 LVERYLPLVYSLARRYLGDGADAEDLVQEGFLGLWRAIERFDPERgvSFSTWLYTIIRNAIIDYLRKQR 69
|
|
| PRK09644 |
PRK09644 |
RNA polymerase sigma factor SigM; Provisional |
22-186 |
8.27e-20 |
|
RNA polymerase sigma factor SigM; Provisional
Pssm-ID: 170033 [Multi-domain] Cd Length: 165 Bit Score: 81.46 E-value: 8.27e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 22 DIVDIYKDKIYQLCYRMLGNVHEAEDIAQEAFIRAYVNIDSFDiNRKFSTWLYRIATNLTIDRIRKKKPDYYLDAEVAGT 101
Cdd:PRK09644 5 EIYKMYINDVYRYLFSLTKSHHAAEDLLQETFYRAYIYLEDYD-NQKVKPWLFKVAYHTFIDFVRKEKKVSFVGTDEIEA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 102 EGLTMysqivadgvlPEDAVVSLELSNTIQQKILKLPDKYRTVIVLKYIDELSLIEIGEILNIPVGTVKTRIHRGREALR 181
Cdd:PRK09644 84 IQAES----------TEEYVVAKNSYEKLIQIIHTLPVIEAQAILLCDVHELTYEEAASVLDLKLNTYKSHLFRGRKRLK 153
|
....*
gi 489327667 182 KQLRD 186
Cdd:PRK09644 154 ALLKE 158
|
|
| PRK12515 |
PRK12515 |
RNA polymerase sigma factor; Provisional |
9-187 |
2.12e-19 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183567 [Multi-domain] Cd Length: 189 Bit Score: 80.93 E-value: 2.12e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 9 IKQVKKGDQDAFADIVDIYKDKIYQLCYRMLGNVHEAEDIAQEAFIRAYVNIDSFDINRKFSTWLYRIATNLTIDRIRKK 88
Cdd:PRK12515 13 LARIAQGDRTAMQTLYGRHHVRVYRFGLRLVRDEQTAEDLVSEVFLDVWRQAGQFEGRSQVSTWLLSIARFKALSALRRR 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 89 KpDYYLDAEVAGTegltmysqiVADGV-LPEDAVVSLELSNTIQQKILKLPDKYRTVIVLKYIDELSLIEIGEILNIPVG 167
Cdd:PRK12515 93 K-HEEIDDEAAAA---------IEDGAdTPEVALQKSDTSAALRACLAKLSPAHREIIDLVYYHEKSVEEVGEIVGIPES 162
|
170 180
....*....|....*....|
gi 489327667 168 TVKTRIHRGrealRKQLRDL 187
Cdd:PRK12515 163 TVKTRMFYA----RKKLAEL 178
|
|
| PRK12533 |
PRK12533 |
RNA polymerase sigma factor; Provisional |
20-180 |
4.02e-19 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237129 [Multi-domain] Cd Length: 216 Bit Score: 80.93 E-value: 4.02e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 20 FADIVDIYKDKIYQLCYRMLGNVHEAEDIAQEAFIRAYVNIDSF--DINRkfsTWLYRIATNLTIDRIRKKKPDY---YL 94
Cdd:PRK12533 20 FRQLVLPHLDAAYNLARWLCGNASDADDVVQEACMRALRFFDSFrgDNAR---PWLLAIVRHTWYSEWRRRANAHevaAP 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 95 DaEVAGTEGLTMYSQIVADgvlPEDAVVSLELSNTIQQKILKLPDKYRTVIVLKYIDELSLIEIGEILNIPVGTVKTRIH 174
Cdd:PRK12533 97 D-TLDDADSLDDWQPAGED---PLALLLRAEDVRLVNAALAKLPVEYREVLVLRELEDMSYREIAAIADVPVGTVMSRLA 172
|
....*.
gi 489327667 175 RGREAL 180
Cdd:PRK12533 173 RARRRL 178
|
|
| PRK12531 |
PRK12531 |
RNA polymerase sigma factor; Provisional |
9-181 |
1.37e-18 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 105726 [Multi-domain] Cd Length: 194 Bit Score: 79.20 E-value: 1.37e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 9 IKQVKKGDQDAFADIVDIYKDKIYQLCYRMLGNVHEAEDIAQEAFIRAYVNIDSFDINRK-FSTWLYRIATNLTIDRIRK 87
Cdd:PRK12531 18 MEKVKSRDKQAFALVFSYYAPKLKQFAMKHVGNEQVAMEMVQETMSTVWQKAHLFDGQKSaLSTWIYTIIRNLCFDLLRK 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 88 KKpdyyldaevagteGLTMYsqIVADGVLPEDaVVSLELSN--TIQQKILK---------LPDKYRTVIVLKYIDELSLI 156
Cdd:PRK12531 98 QK-------------GKDLH--IHADDIWPSD-YYPPDLVDhySPEQDMLKeqvmkfldrLPKAQRDVLQAVYLEELPHQ 161
|
170 180
....*....|....*....|....*
gi 489327667 157 EIGEILNIPVGTVKTRIHRGREALR 181
Cdd:PRK12531 162 QVAEMFDIPLGTVKSRLRLAVEKLR 186
|
|
| PRK09646 |
PRK09646 |
ECF RNA polymerase sigma factor SigK; |
9-186 |
6.99e-18 |
|
ECF RNA polymerase sigma factor SigK;
Pssm-ID: 182015 [Multi-domain] Cd Length: 194 Bit Score: 77.02 E-value: 6.99e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 9 IKQVKKGDQDAFADIVDIYKDKIYQLCYRMLGNVHEAEDIAQEAFIRAYVNIDSFDINR-KFSTWLYRIATNLTIDRIRk 87
Cdd:PRK09646 21 LRRVARGDQDAFAELYDRTSSRVYGLVRRVLRDPGYSEETTQEVYLEVWRTASRFDPARgSALAWLLTLAHRRAVDRVR- 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 88 kkpdyyldAEVAGTEGLTMYSQIVADG---VLPEDAVVSLElsntiQQKIL----KLPDKYRTVIVLKYIDELSLIEIGE 160
Cdd:PRK09646 100 --------SEQAASQREVRYGARNVDPafdQVAEEVEARLE-----RERVRdcldALTDTQRESVTLAYYGGLTYREVAE 166
|
170 180
....*....|....*....|....*.
gi 489327667 161 ILNIPVGTVKTRIhrgREALRKqLRD 186
Cdd:PRK09646 167 RLAVPLGTVKTRM---RDGLIR-LRD 188
|
|
| PRK09640 |
PRK09640 |
RNA polymerase sigma factor SigX; Reviewed |
16-187 |
8.09e-18 |
|
RNA polymerase sigma factor SigX; Reviewed
Pssm-ID: 236603 [Multi-domain] Cd Length: 188 Bit Score: 76.90 E-value: 8.09e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 16 DQDAFADIVDIYKDKIYQLCYRMLGNVHEAEDIAQEAFIRAYVNIDSFDINRKFSTWLYRIATNLTIDRIRKKKPDYYLd 95
Cdd:PRK09640 24 VTRAYEELMRRYQRTLFNVCARYLGNDRDADDVCQEVMLKVLYGLKNFEGKSKFKTWLYSITYNECITQYRKERRKRRL- 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 96 aevagTEGLTMYSQIVADgvlpEDAVVSLELSNTIQQKILKLPDKYRTVIVLKYIDELSLIEIGEILNIPVGTVKTRIHR 175
Cdd:PRK09640 103 -----MDALSLDPLEEAS----EEKAPKPEERGGLDRWLVHVNPIDREILVLRFVAELEFQEIADIMHMGLSATKMRYKR 173
|
170
....*....|..
gi 489327667 176 GREALRKQLRDL 187
Cdd:PRK09640 174 ALDKLREKFAGL 185
|
|
| PRK12511 |
PRK12511 |
RNA polymerase sigma factor; Provisional |
41-181 |
2.81e-17 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237123 [Multi-domain] Cd Length: 182 Bit Score: 75.21 E-value: 2.81e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 41 NVHEAEDIAQEAFIRAYVNIDSFDINRKFSTWLYRIATNLTIDRIRKKKPDYYLDAEVAgtegltmysqIVADGVLP--E 118
Cdd:PRK12511 27 DSAEAEDLVHDALVRALERRASFRSGGNLRTWLMSILHNAFIDELRRRRVEARRADELA----------VLADASLPaaQ 96
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489327667 119 DAVVSLElsnTIQQKILKLPDKYRTVIVLKYIDELSLIEIGEILNIPVGTVKTRIHRGREALR 181
Cdd:PRK12511 97 EHAVRLA---QIRDAFFDLPEEQRAALHLVAIEGLSYQEAAAVLGIPIGTLMSRIGRARAALR 156
|
|
| PRK06811 |
PRK06811 |
RNA polymerase factor sigma-70; Validated |
9-182 |
2.35e-16 |
|
RNA polymerase factor sigma-70; Validated
Pssm-ID: 180707 [Multi-domain] Cd Length: 189 Bit Score: 73.05 E-value: 2.35e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 9 IKQVKKGDQDAFADIVDIYKDKIYQLCYRMLGNVHEAEDI---AQEAFIRAYVNIDSFDINR-KFSTWLYRIATNLTIDR 84
Cdd:PRK06811 9 IKELKKKNEKALEFIVDTYGNLVKKIVHKVLGTVNYSQLIeecVNDIFLSIWNNIDKFDEEKgSFKKWIAAISKYKAIDY 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 85 IRKKKPDYYLDAEvagtegltmYSQIVADGVLPEDAVVSLELSNTIQQKILKLPDKYRTVIVLKYIDELSLIEIGEILNI 164
Cdd:PRK06811 89 KRKLTKNNEIDSI---------DEFILISEESIENEIILKENKEEILKLINDLEKLDREIFIRRYLLGEKIEEIAKKLGL 159
|
170
....*....|....*...
gi 489327667 165 PVGTVKTRIHRGREALRK 182
Cdd:PRK06811 160 TRSAIDNRLSRGRKKLQK 177
|
|
| PRK09642 |
PRK09642 |
RNA polymerase sigma factor; |
27-186 |
1.05e-15 |
|
RNA polymerase sigma factor;
Pssm-ID: 170031 [Multi-domain] Cd Length: 160 Bit Score: 70.90 E-value: 1.05e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 27 YKDKIYQLCYRMLGNVHEAEDIAQEAFIRAYVNIDSFDInRKFSTWLYRIATNLTIDRIRKKKPDYYLDAEVAGTEGLTM 106
Cdd:PRK09642 4 YRHYIFQVIFSILRHEEDAKDVTQEVFVKIHASLPNYQF-RGLKTWMARIATNHAIDYKRKKARENEELSLCKETEENIK 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 107 YSQIVadgvlpEDAVVSLELSNTIQQKILKLPDKYRTVIVLKYIDELSLIEIGEILNIPVGTVKTRIHRGREALRKQLRD 186
Cdd:PRK09642 83 SSHNI------EDLLLTKEQKLLIAQKLRELPENYRDVVLAHYLEEKSYQEIALQEKIEVKTVEMKLYRARKWIKKHWKE 156
|
|
| PRK12517 |
PRK12517 |
RNA polymerase sigma factor; Provisional |
17-184 |
1.37e-15 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183569 [Multi-domain] Cd Length: 188 Bit Score: 70.87 E-value: 1.37e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 17 QDAFADIVDIYKDKIYQLCYRMLGNVHEAEDIAQEAFIRAYVNIDSFDINRKFSTWLYRIATNLTIDRIRKKKPDYyLDA 96
Cdd:PRK12517 22 QRRYEALVKALHADIYRYAYWLCKDKHIAEDLVQETFLRAWRSLDSLKDEKAAKAWLITILRRENARRFERKQFDL-VDI 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 97 EVAGTEGLTMYSqivadgvlPEDavvslELSNT-IQQKILKLPDKYRTVIVLKYIDELSLIEIGEILNIPVGTVKTRIHR 175
Cdd:PRK12517 101 EDDSIEDDASHS--------SEE-----EMEQEwLRRQIAKLDPEYREPLLLQVIGGFSGEEIAEILDLNKNTVMTRLFR 167
|
....*....
gi 489327667 176 GREALRKQL 184
Cdd:PRK12517 168 ARNQLKEAL 176
|
|
| Sigma70_r4 |
cd06171 |
Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in ... |
130-181 |
1.37e-15 |
|
Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or plastid core RNA polymerase to specific promoter elements located upstream of transcription initiation points. The SR4 of Ec sigma70 and other essential primary SFs contact promoter sequences located 35 base-pairs upstream of the initiation point, recognizing a 6-base-pair -35 consensus TTGACA. Sigma70 related SFs also include SFs which are dispensable for bacterial cell growth for example Ec sigmaS, SFs which activate regulons in response to a specific signal for example heat-shock Ec sigmaH, and a group of SFs which includes the extracytoplasmic function (ECF) SFs and is typified by Ec sigmaE which contains SR2 and -4 only. ECF SFs direct the transcription of genes that regulate various responses including periplasmic stress and pathogenesis. Ec sigmaE SR4 also contacts the -35 element, but recognizes a different consensus (a 7-base-pair GGAACTT). Plant SFs recognize sigma70 type promoters and direct transcription of the major plastid RNA polymerase, plastid-encoded RNA polymerase (PEP).
Pssm-ID: 100119 [Multi-domain] Cd Length: 55 Bit Score: 67.51 E-value: 1.37e-15
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 489327667 130 IQQKILKLPDKYRTVIVLKYIDELSLIEIGEILNIPVGTVKTRIHRGREALR 181
Cdd:cd06171 4 LEEALDKLPEREREVILLRFGEGLSYEEIAEILGISRSTVRQRLHRALKKLR 55
|
|
| Sigma70_r4_2 |
pfam08281 |
Sigma-70, region 4; Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 ... |
130-180 |
2.66e-13 |
|
Sigma-70, region 4; Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif.
Pssm-ID: 400535 [Multi-domain] Cd Length: 54 Bit Score: 61.32 E-value: 2.66e-13
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 489327667 130 IQQKILKLPDKYRTVIVLKYIDELSLIEIGEILNIPVGTVKTRIHRGREAL 180
Cdd:pfam08281 4 LLRALEELPPRQREVFLLRYLEGLSYAEIAELLGISEGTVKSRLSRARKKL 54
|
|
| Sig-70_gvs1 |
TIGR02989 |
RNA polymerase sigma-70 factor, Rhodopirellula/Verrucomicrobium family; This group of sigma ... |
18-181 |
2.73e-13 |
|
RNA polymerase sigma-70 factor, Rhodopirellula/Verrucomicrobium family; This group of sigma factors are members of the sigma-70 family (TIGR02937) and are abundantly found in the species Rhodopirellula baltica (11), and Verrucomicrobium spinosum (16) and to a lesser extent in Gemmata obscuriglobus (2).
Pssm-ID: 274379 [Multi-domain] Cd Length: 159 Bit Score: 64.26 E-value: 2.73e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 18 DAFADIVDIYKDKIYQLCYRMLGNVHEAEDIAQEAFIRAYVNIDSFDINRKFSTWLYRIATNLTIDRIRKKKPDYYL-DA 96
Cdd:TIGR02989 1 KAFVRLLTRHERALRAFVRSLVADRDDVDDVLQETFVVAWRKFDQFDPGTNFVAWARGIARNKVLNYRRKLGRDRLVfDD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 97 EVagtegltmySQIVADGVLPEDAVVSLELSNTIQQKILKLPDKYRTVIVLKYIDELSLIEIGEILNIPVGTVKTRIHRG 176
Cdd:TIGR02989 81 DL---------LEALAAEAEPTEAERLSDDRQALEGCLEKLPERQRELLDLRYQRGQKATALAEQTGRTVNAVYKALQRI 151
|
....*
gi 489327667 177 REALR 181
Cdd:TIGR02989 152 RVSLR 156
|
|
| PRK12540 |
PRK12540 |
RNA polymerase sigma factor; Provisional |
40-184 |
5.24e-13 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183579 [Multi-domain] Cd Length: 182 Bit Score: 64.22 E-value: 5.24e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 40 GNVHEAEDIAQEAFIRAYVNIDSFDINRKFSTWLYRIATNLTIDRIRKKKPDYYlDAEvaGTEGLTMYSQIVADGVLP-E 118
Cdd:PRK12540 27 GNGDRADDLVQETLLRALANIDSFQPGSNLPAWLFTILRNLFRSDYRKRRREVE-DAD--GSYAKTLKSQPGQNAHLEfE 103
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489327667 119 DAVVSLElsntiqqkilKLPDKYRTVIVLKYIDELSLIEIGEILNIPVGTVKTRIHRGREALRKQL 184
Cdd:PRK12540 104 EFRAALD----------KLPQDQREALILVGASGFSYEDAAAICGCAVGTIKSRVNRARSKLSALL 159
|
|
| PRK09636 |
PRK09636 |
RNA polymerase sigma factor SigJ; Provisional |
15-86 |
1.03e-12 |
|
RNA polymerase sigma factor SigJ; Provisional
Pssm-ID: 236600 [Multi-domain] Cd Length: 293 Bit Score: 64.56 E-value: 1.03e-12
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489327667 15 GDQDAFADIVDIYKDKIYQLCYRMLGNVHEAEDIAQEAFIRAYvNIDSFDInRKFSTWLYRIATNLTIDRIR 86
Cdd:PRK09636 1 MTMADAAAEFEPLRPHLLSVAYRMLGSVADAEDIVQEAWLRWN-NADRAQI-RDPRAWLTRVVTRLCLDRLR 70
|
|
| PRK12516 |
PRK12516 |
RNA polymerase sigma factor; Provisional |
38-185 |
3.14e-12 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183568 [Multi-domain] Cd Length: 187 Bit Score: 61.90 E-value: 3.14e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 38 MLGNVHEAEDIAQEAFIRAYVNIDSFDINRKFSTWLYRIATNLTIDRIRKKkpdyylDAEVAGTEGltMYSQIVAdgVLP 117
Cdd:PRK12516 30 LIGRHDRADDLVQDTIMKAWAKQDHFEVGTNMKAWLFTILRNEFYSQMRKR------GREVQDTDG--MFTEQLA--VHP 99
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489327667 118 EDaVVSLELSNtIQQKILKLPDKYRTVIVLKYIDELSLIEIGEILNIPVGTVKTRIHRGREALRKQLR 185
Cdd:PRK12516 100 SQ-YGTLDLQD-FRAALDQLPDDQREAIILVGASGFAYEEAAEICGCAVGTIKSRVNRARQRLQEILQ 165
|
|
| PRK13919 |
PRK13919 |
putative RNA polymerase sigma E protein; Provisional |
12-186 |
3.93e-12 |
|
putative RNA polymerase sigma E protein; Provisional
Pssm-ID: 184395 [Multi-domain] Cd Length: 186 Bit Score: 61.85 E-value: 3.93e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 12 VKKGDQDAFADIVDIYKDKIYQLCYRMLGNVHEAEDIAQEAFIRAYVNIDSFDINRKFS-TWLYRIATNLTIDRIRKK-- 88
Cdd:PRK13919 17 VARGEEEALRALFRRYAGAFLALARRMGLDGAAAEDVVQEVFIRVWKKAKEFDPRRGSArAWLLALAHHAAVDHVRRRaa 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 89 KPDyYLDAEVAGTEGLtmysQIVADGVLPEDAVVSLELsntiQQKILKLPDKYRTVIVLKYIDELSLIEIGEILNIPVGT 168
Cdd:PRK13919 97 RPQ-PLEPDEREPEAF----DLPGPGLDEEGHLDRTRL----GRALKALSPEERRVIEVLYYQGYTHREAAQLLGLPLGT 167
|
170
....*....|....*...
gi 489327667 169 VKTRIHRGREALRKQLRD 186
Cdd:PRK13919 168 LKTRARRALSRLKEVLRE 185
|
|
| PRK12541 |
PRK12541 |
RNA polymerase sigma factor; Provisional |
25-182 |
8.24e-12 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183580 [Multi-domain] Cd Length: 161 Bit Score: 60.34 E-value: 8.24e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 25 DIYKDKIYQLCYRML---GNVHEAEDIAQEAFIRAYVNIDSFDiNRKFSTWLYRIATNLTIDRIRKKKPdyYLDAEVAGT 101
Cdd:PRK12541 9 EIYSEHMQDLFRYLLsltGDSHFAEDLMQETFYRMLVHIDYYK-GEEIRPWLFTIAYNAFIDWYRKEKK--YKTTTIEEF 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 102 EgltmysqivadgvLPEdaVVSLELSNTIQQKIL-------KLPDKYRTVIVLKYIDELSLIEIGEILNIPVGTVKTRIH 174
Cdd:PRK12541 86 H-------------LPN--VPSTEHEYFIKHEIAswldslsSLPLERRNVLLLRDYYGFSYKEIAEMTGLSLAKVKIELH 150
|
....*...
gi 489327667 175 RGREALRK 182
Cdd:PRK12541 151 RGRKETKS 158
|
|
| PRK12546 |
PRK12546 |
RNA polymerase sigma factor; Provisional |
41-184 |
9.70e-12 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 139055 [Multi-domain] Cd Length: 188 Bit Score: 60.62 E-value: 9.70e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 41 NVHEAEDIAQEAFIRAYVNIDSFDINRKFSTWLYRIATNLTIDRIRKKKpdyyldAEVAGTEGLTMYSQIVA---DGVLP 117
Cdd:PRK12546 30 NVAVADDLVQDTIVKAWTNFDKFQEGTNLRAWLFTILRNTFYSDRRKHK------REVPDPEGVHAASLAVKpahDGRLA 103
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489327667 118 EDavvslELSNTIQQkilkLPDKYRTVIVLKYIDELSLIEIGEILNIPVGTVKTRIHRGREALRKQL 184
Cdd:PRK12546 104 MS-----DFRAAFAQ----LPDEQREALILVGASGFSYEEAAEMCGVAVGTVKSRANRARARLAELL 161
|
|
| PRK12537 |
PRK12537 |
RNA polymerase sigma factor; Provisional |
14-181 |
1.10e-11 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 171568 [Multi-domain] Cd Length: 182 Bit Score: 60.56 E-value: 1.10e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 14 KGDQDAFADIVDIYKDKIYQLCYRMLGNVHEAEDIAQEAFIRAYVNIDSFDINRKFST-WLYRIATNLTIDRIRKKKPDY 92
Cdd:PRK12537 19 RGDRRALQALYQQESARLLGVARRIVRDRALAEDIVHDAFIKIWTGAASFDPARGSARgWIYSVTRHLALNVLRDTRREV 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 93 YLDAEvaGTEGLTMYSQIVADgvlpEDAVVSlelSNTIQQKILKLPDKYRTVIVLKYIDELSLIEIGEILNIPVGTVKTR 172
Cdd:PRK12537 99 VLDDD--AEETAQTLHEIIDD----FDLWAN---SGKIHRCLEQLEPARRNCILHAYVDGCSHAEIAQRLGAPLGTVKAW 169
|
....*....
gi 489327667 173 IHRGREALR 181
Cdd:PRK12537 170 IKRSLKALR 178
|
|
| PRK12544 |
PRK12544 |
RNA polymerase factor sigma-70; |
39-186 |
3.13e-11 |
|
RNA polymerase factor sigma-70;
Pssm-ID: 183583 [Multi-domain] Cd Length: 206 Bit Score: 59.82 E-value: 3.13e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 39 LGNVHEAEDIAQEAFIRAYVNIDSFDINRKFSTWLYRIATNLTIDRIRKKKPDYYLDAEVAGTEGLTMYSQIV-ADG--- 114
Cdd:PRK12544 39 LSDLHLAEDAVQEALIGALKNADSFAGRAAFKTWVFAILKNKIIDLLRQKKRHVSASSLLRDEEEEEDFEELFdESGhwq 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 115 --------VLPEDAVVSLELSNTIQQKILKLPDKYRTVIVLKYIDELSLIEIGEILNIPVGTVKTRIHRGREALRKQLRD 186
Cdd:PRK12544 119 kderpqawGNPEESLEQEQFWRIFEACLDGLPAKYARVFMMREFIELETNEICHAVDLSVSNLNVLLYRARLRLRECLEN 198
|
|
| PRK12539 |
PRK12539 |
RNA polymerase sigma factor SigF; |
44-180 |
4.66e-11 |
|
RNA polymerase sigma factor SigF;
Pssm-ID: 237132 [Multi-domain] Cd Length: 184 Bit Score: 58.59 E-value: 4.66e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 44 EAEDIAQEAFIRAYVNIDSFDINRKFSTWLYRIATNLTIDRIRKkkpdyyldaevagTEGLTMYSQIV-ADGVLPEDAVV 122
Cdd:PRK12539 51 EAEDLVQEALMAIHTRRHTYDPEQPLTPWVYAIARYKLIDHLRR-------------TRASLADVPIDdADELVAHDDHA 117
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 489327667 123 SLELSNTIQQKILKLPDKYRTVIVLKYIDELSLIEIGEILNIPVGTVKTRIHRGREAL 180
Cdd:PRK12539 118 AVESTLDLGRLLARLPEKMRLAIQAVKLEGLSVAEAATRSGMSESAVKVSVHRGLKAL 175
|
|
| Sigma70_r4 |
pfam04545 |
Sigma-70, region 4; Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 ... |
136-182 |
7.20e-11 |
|
Sigma-70, region 4; Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.
Pssm-ID: 461347 [Multi-domain] Cd Length: 50 Bit Score: 54.74 E-value: 7.20e-11
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 489327667 136 KLPDKYRTVIVLKYIDELSLIEIGEILNIPVGTVKTRIHRGREALRK 182
Cdd:pfam04545 4 SLPPRERQVLVLRYGEGLTLEEIGERLGISRERVRQIEKRALRKLRK 50
|
|
| PRK12547 |
PRK12547 |
RNA polymerase sigma factor; Provisional |
38-185 |
1.52e-10 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 139056 [Multi-domain] Cd Length: 164 Bit Score: 57.19 E-value: 1.52e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 38 MLGNVHEAEDIAQEAFIRAYVNIDSFDINRKFSTWLYRIATNLTIDRIRKKKpdyyldAEVAGTEGLtmYSQIVAdgvLP 117
Cdd:PRK12547 26 LSSKHDKAEDLVQDTLMKAWAKQDSFEMGTNLKAWLFTILRNEFYSQMRKRG------REVQDSDGV--FTARVA---VH 94
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489327667 118 EDAVVSLELsNTIQQKILKLPDKYRTVIVLKYIDELSLIEIGEILNIPVGTVKTRIHRGREALRKQLR 185
Cdd:PRK12547 95 PAQYGSLDL-QDFKKALNLLSADQREAIILIGASGFSYEDAAAICGCAVGTIKSRVSRARNRLQELLK 161
|
|
| PRK12534 |
PRK12534 |
RNA polymerase sigma factor; Provisional |
15-184 |
1.62e-10 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183576 [Multi-domain] Cd Length: 187 Bit Score: 57.37 E-value: 1.62e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 15 GDQDAFADIVDIYKDKIYQLCYRMLGNVHEAEDIAQEAFIRAYVNIDSFDINR-KFSTWLYRIATNLTIDRIRKKKPDyy 93
Cdd:PRK12534 22 GDRHAFEALYRQTSPKLFGVCLRMIPQRAEAEEVLQDVFTLIWHKAGQFDPSRaRGLTWLAMIARNKAIDHLRANAPQ-- 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 94 lDAEVAGTEGltmysqivadGVLPEDAVVSLELSN------TIQQKILKLPDKYRTVIVLKYIDELSLIEIGEILNIPVG 167
Cdd:PRK12534 100 -RRNVALDDA----------GELRAADASPLERTErastrrRIDHCLAELEPPRSELIRTAFFEGITYEELAARTDTPIG 168
|
170
....*....|....*..
gi 489327667 168 TVKTRIHRGREALRKQL 184
Cdd:PRK12534 169 TVKSWIRRGLAKLKACL 185
|
|
| PRK12526 |
PRK12526 |
RNA polymerase sigma factor; Provisional |
16-186 |
1.76e-10 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237127 [Multi-domain] Cd Length: 206 Bit Score: 57.50 E-value: 1.76e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 16 DQDAFADIVDIYKDKIYQLCYRMLGNVHEAEDIAQEAFIRAYVNIDSFDINR-KFSTWLYRIATNLTIDRIRKKKpdyyl 94
Cdd:PRK12526 36 DKQAFTHLFQFFAPKIKRFGIKQLGNEAQANELVQETMSNVWRKAHLYNGDKgAATTWVYTVMRNAAFDMLRKIK----- 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 95 daevagteglTMYSQIVADGVLP-EDAVV-----SLELSNTIQQK-----ILKLPDKYRTVIVLKYIDELSLIEIGEILN 163
Cdd:PRK12526 111 ----------AKKEQNLGDDIWPiEQALAesqseSEEFSDHLMDKqilsyIEKLPEAQQTVVKGVYFQELSQEQLAQQLN 180
|
170 180
....*....|....*....|...
gi 489327667 164 IPVGTVKTRIHRGREALRKQLRD 186
Cdd:PRK12526 181 VPLGTVKSRLRLALAKLKVQMGE 203
|
|
| PRK09649 |
PRK09649 |
RNA polymerase sigma factor SigC; Reviewed |
14-180 |
2.86e-10 |
|
RNA polymerase sigma factor SigC; Reviewed
Pssm-ID: 137458 [Multi-domain] Cd Length: 185 Bit Score: 56.59 E-value: 2.86e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 14 KGDQDAFADIVDIYKDKIYQLCyRMLGNVHEAEDIAQEAFIRAYVNIDSFDINRKFSTWLYRIATNLTIDRIR--KKKPD 91
Cdd:PRK09649 20 KGNGRALEAFIKATQQDVWRFV-AYLSDVGSADDLTQETFLRAIGAIPRFSARSSARTWLLAIARHVVADHIRhvRSRPR 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 92 YYLDaevaGTEGLTMYSQIVADGVlpEDAVvslELSNTIQQkilkLPDKYRTVIVLKYIDELSLIEIGEILNIPVGTVKT 171
Cdd:PRK09649 99 TTRG----ARPEHLIDGDRHARGF--EDLV---EVTTMIAD----LTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRS 165
|
....*....
gi 489327667 172 RIHRGREAL 180
Cdd:PRK09649 166 RVARARDAL 174
|
|
| SigX4 |
TIGR02957 |
RNA polymerase sigma-70 factor, TIGR02957 family; This group of sigma factors are members of ... |
27-181 |
5.81e-10 |
|
RNA polymerase sigma-70 factor, TIGR02957 family; This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building and bidirectional best hits, to represent a conserved family. This family is found in a limited number of bacterial lineages. This family includes apparent paralogous expansion in Streptomyces coelicolor A3(2), and multiple copies in Mycobacterium smegmatis MC2, Streptomyces avermitilis MA-4680 and Nocardia farcinica IFM10152.
Pssm-ID: 132002 [Multi-domain] Cd Length: 281 Bit Score: 56.98 E-value: 5.81e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 27 YKDKIYQLCYRMLGNVHEAEDIAQEAFIRAYvNIDSFDINRKFStWLYRIATNLTIDRI---RKKKPDY---YLDAEVAG 100
Cdd:TIGR02957 6 LRPLLFSLAYRMLGSVADAEDIVQETFLRWQ-EADRAQIENPKA-YLTKVVTRRCIDVLrsaRARREVYvgpWLPEPLLT 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 101 TegltmySQIVADGVLPEDAvVSLELSNTIQQkilkLPDKYRTVIVLKYIDELSLIEIGEILNIPVGTVKTRIHRGREAL 180
Cdd:TIGR02957 84 T------SADPAESVELAES-LSMAYLLLLER----LSPLERAVFVLREVFDYPYEEIASIVGKSEANCRQLVSRARRHL 152
|
.
gi 489327667 181 R 181
Cdd:TIGR02957 153 D 153
|
|
| PRK12532 |
PRK12532 |
RNA polymerase sigma factor; Provisional |
45-184 |
1.01e-09 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 171564 [Multi-domain] Cd Length: 195 Bit Score: 55.32 E-value: 1.01e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 45 AEDIAQEAFIRAYVNIDSFDINRKFSTWLYRIATNLTIDRIRKK----KPDYYLDAEVAGTEGLTMYSQIV--------A 112
Cdd:PRK12532 33 AEDLVQETLLSAYSAGDSFQGRALVNSWLFAILKNKIIDALRQIgrqrKVFTLLDDELLDEAFESHFSQNGhwtpegqpQ 112
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489327667 113 DGVLPEDAVVSLELSNTIQQKILKLPDKYRTVIVLKYIDELSLIEIGEILNIPVGTVKTRIHRGREALRKQL 184
Cdd:PRK12532 113 HWNTPEKSLNNNEFQKILQSCLYNLPENTARVFTLKEILGFSSDEIQQMCGISTSNYHTIMHRARESLRQCL 184
|
|
| PRK09648 |
PRK09648 |
RNA polymerase sigma factor ShbA; |
15-184 |
1.34e-09 |
|
RNA polymerase sigma factor ShbA;
Pssm-ID: 236607 [Multi-domain] Cd Length: 189 Bit Score: 54.98 E-value: 1.34e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 15 GDQDAFADIVDIYKDKIYQLCYRMLGNV----HEAEDIAQEAFIRAYVNIDSF-DINRKFSTWLYRIATNLTIDRIRKK- 88
Cdd:PRK09648 21 GDRRALREVLEIIRPLVVRYCRARLGGVerpgLSADDVAQEVCLAVITALPRYrDQGRPFLAFVYGIAAHKVADAHRAAg 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 89 KPDYYLDAEVAGTEgltmysqivADGVLPEDAVVSLELSNTIQQKILKLPDKYRTVIVLKYIDELSLIEIGEILNIPVGT 168
Cdd:PRK09648 101 RDKAVPTEEVPERP---------SDDAGPEERALRSESSNRMRELLDTLPEKQREILILRVVVGLSAEETAEAVGSTPGA 171
|
170
....*....|....*.
gi 489327667 169 VKTRIHRGREALRKQL 184
Cdd:PRK09648 172 VRVAQHRALARLRAEI 187
|
|
| Sig70_famx1 |
TIGR02943 |
RNA polymerase sigma-70 factor, TIGR02943 family; This group of sigma factors are members of ... |
45-184 |
4.59e-09 |
|
RNA polymerase sigma-70 factor, TIGR02943 family; This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family.
Pssm-ID: 274359 [Multi-domain] Cd Length: 188 Bit Score: 53.23 E-value: 4.59e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 45 AEDIAQEAFIRAYVNIDSFDINRKFSTWLYRIATNLTIDRIRKKKPD---YYLDAEVAGTEGLTMYSQ--------IVAD 113
Cdd:TIGR02943 29 AEDAVQETLLAALSHRDSFAGRSALKTWLFAILKNKIIDALRAKGREvkvSDLDDELDDEAFNALFTQnghwaqhgQPQH 108
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 489327667 114 GVLPEDAVVSLELSNTIQQKILKLPDKYRTVIVLKYIDELSLIEIGEILNIPVGTVKTRIHRGREALRKQL 184
Cdd:TIGR02943 109 WNTPEKQLENKEFWEVFEACLYHLPEQTARVFMMREVLGFESDEICQELEISTSNCHVLLYRARLSLRACL 179
|
|
| FliA |
COG1191 |
DNA-directed RNA polymerase specialized sigma subunit [Transcription]; DNA-directed RNA ... |
5-186 |
1.06e-08 |
|
DNA-directed RNA polymerase specialized sigma subunit [Transcription]; DNA-directed RNA polymerase specialized sigma subunit is part of the Pathway/BioSystem: RNA polymerase
Pssm-ID: 440804 [Multi-domain] Cd Length: 236 Bit Score: 52.90 E-value: 1.06e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 5 IKKRIKQVKKGDQDAFADIVDIYKDKIYQLCYRMLGNVH-EAEDIAQ---EAFIRAyvnIDSFDINR--KFSTW-LYRI- 76
Cdd:COG1191 2 LEELLRRYQEGDEEAREELIEEYLPLVKKIASRLAGRLPaELDDLIQvglIGLIEA---IDRFDPSKgvSFETYaVPRIr 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 77 ----------------------ATNLTIDRIRKKKPDYYLDAEVAGTEGLTM--YSQIVADGVL---------------- 116
Cdd:COG1191 79 gaildylrdedwvprsvrelarKIEEAIEELEQELGREPTDEEIAEELGISLeeVQEALEAANAyqllsldepledgddl 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489327667 117 --------PEDAVVSLELSNTIQQKILKLPDKYRTVIVLKYIDELSLIEIGEILNIPVGTVkTRIH-RGREALRKQLRD 186
Cdd:COG1191 159 ldllesgdPEEELEHEELREALAEAIEQLPERERLVLSLYYFEELTLKEIAEVLGVSESRV-SRLHkKALARLREYLKE 236
|
|
| PRK12527 |
PRK12527 |
RNA polymerase sigma factor; Reviewed |
27-185 |
1.59e-08 |
|
RNA polymerase sigma factor; Reviewed
Pssm-ID: 171560 [Multi-domain] Cd Length: 159 Bit Score: 51.31 E-value: 1.59e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 27 YKDKIYQLCYRmLGNVHEAEDIAQEAFIRAYVNIDSFDIN--RKFstwLYRIATNLTIDR-----IRKKKPDYYLDAEva 99
Cdd:PRK12527 5 YRELVRFLSAR-LGNRQAAEDVAHDAYLRVLERSSSAQIEhpRAF---LYRTALNLVVDRhrrhrVRQAEPLEVLDEE-- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 100 gtEGLTMYSQIVAdgvlpEDAVVSLELsntIQQKILKLPDKYRTVIVLKYIDELSLIEIGEILNIPVGTVKTRIHRGREA 179
Cdd:PRK12527 79 --ERLHSPSPQTR-----LDLGQRLAL---LQRALAELPPACRDSFLLRKLEGLSHQQIAEHLGISRSLVEKHIVNAMKH 148
|
....*.
gi 489327667 180 LRKQLR 185
Cdd:PRK12527 149 CRVRMR 154
|
|
| PRK07037 |
PRK07037 |
extracytoplasmic-function sigma-70 factor; Validated |
37-181 |
1.87e-08 |
|
extracytoplasmic-function sigma-70 factor; Validated
Pssm-ID: 180803 [Multi-domain] Cd Length: 163 Bit Score: 51.22 E-value: 1.87e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 37 RMLGNVHEAEDIAQEAFIRAYVNIDSFDINRKFStWLYRIATNLTIDRIRKK--KPDYYLDAEvagtEGLTMYSQivadG 114
Cdd:PRK07037 17 RIVGCRSRAEDVVQDAFVKLVEAPNQDAVKQPVA-YLFRIVRNLAIDHYRRQalENKYHGDEE----DGLDVPSP----E 87
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489327667 115 VLPEDAVVSLELSNTIQQKILKLPDKYRTVIVLKYIDELSLIEIGEILNIPVGTVKTRIhrgREALR 181
Cdd:PRK07037 88 ASPEAALINRDTLRHVADALSELPARTRYAFEMYRLHGETQKDIARELGVSPTLVNFMI---RDALV 151
|
|
| PRK12542 |
PRK12542 |
RNA polymerase sigma factor; Provisional |
11-181 |
2.66e-08 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183581 [Multi-domain] Cd Length: 185 Bit Score: 51.21 E-value: 2.66e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 11 QVKKGDQDAFADIVDIYKDKIYQLCYRMLGNVHEAEDIAQEAFIRAYVNIDS-FDIN-RKFSTWLYRIATNLTIDRIRKK 88
Cdd:PRK12542 2 KVTNNDYEKMEELYELYEQKVYYVAYSILNNIQQAEDAVQETFITLYKNLEKlHSLNtQELKRYILRVAKNKAIDSYRKN 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 89 K------PDYYLDAEVAGTEGLTMYSQIVADGVLPEDAVVSLELSNtiqqkilklpdkyRTVIVLKYIDELSLIEIGEIL 162
Cdd:PRK12542 82 KrhetflEEYERESIEAVDENIEEWEKRKMSEVQIDTLLKELNESN-------------RQVFKYKVFYNLTYQEISSVM 148
|
170
....*....|....*....
gi 489327667 163 NIPVGTVKTRIHRGREALR 181
Cdd:PRK12542 149 GITEANVRKQFERARKRVQ 167
|
|
| PRK12512 |
PRK12512 |
RNA polymerase sigma factor; Provisional |
42-186 |
2.75e-08 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 171551 [Multi-domain] Cd Length: 184 Bit Score: 51.24 E-value: 2.75e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 42 VHEAEDIAQEAFIRAYVNIDSFDINRKFSTWLYRIATNLTIDRIRKKkpdyyldaevagteGLTMYSQI--VADGVLPED 119
Cdd:PRK12512 50 ADQAEDIVQEILLAVHLKRHTWDPGAPFAPWLFAIARNKLIDALRRR--------------GRRVFVDIddFAETLPAEP 115
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489327667 120 AVVSLELSNtIQQKILKLPDKYRTVIVLKYIDELSLIEIGEILNIPVGTVKTRIHRGREALRKQLRD 186
Cdd:PRK12512 116 ATETLPAGD-VGRHLETLPPRQRDVVQSISVEGASIKETAAKLSMSEGAVRVALHRGLAALAAKFRS 181
|
|
| sigI |
PRK09635 |
RNA polymerase sigma factor SigI; Provisional |
34-177 |
2.81e-08 |
|
RNA polymerase sigma factor SigI; Provisional
Pssm-ID: 182008 [Multi-domain] Cd Length: 290 Bit Score: 52.28 E-value: 2.81e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 34 LCYRMLGNVHEAEDIAQEAFIR-AYVNIDSFDINRkfsTWLYRIATNLTIDRIRKKKpdyyLDAEVAGTEGLTMYSQIVA 112
Cdd:PRK09635 21 LAFRMVGDIGVAEDMVQEAFSRlLRAPVGDIDDER---GWLIVVTSRLCLDHIKSAS----TRRERPQDIAAWHDGDASV 93
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489327667 113 DGVLPEDAV-VSLELSNTIQQKILKLPDKYRTVIVLKYIDELSLIEIGEILNIPVGTVKTRIHRGR 177
Cdd:PRK09635 94 SSVDPADRVtLDDEVRLALLIMLERLGPAERVVFVLHEIFGLPYQQIATTIGSQASTCRQLAHRAR 159
|
|
| Sigma70_ECF |
pfam07638 |
ECF sigma factor; These proteins are probably RNA polymerase sigma factors belonging to the ... |
9-186 |
4.19e-08 |
|
ECF sigma factor; These proteins are probably RNA polymerase sigma factors belonging to the extra-cytoplasmic function (ECF) subfamily and show sequence similarity to pfam04542 and pfam04545.
Pssm-ID: 254323 [Multi-domain] Cd Length: 185 Bit Score: 50.49 E-value: 4.19e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 9 IKQVKKGDQDAFADIVDIYKDKIYQLCYRMLGN---VHEAEDIA--QEAFIRAYVNIDSFDINRKfsTWLYRIATNLT-- 81
Cdd:pfam07638 8 LQQVKDGDAAATEQLLPLVYDELRRLAGSKLQNerrGHTLQPTAlvHEAFVRLVDTEDFPDWSGR--GHFFAAAAEAMrr 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 82 --IDRIRKKKPDyyldaEVAGTEGLTMYSQIVADGVLPEDAVVsLELSNTIQQkILKLPDKYRTVIVLKYIDELSLIEIG 159
Cdd:pfam07638 86 ilIDHARRRQRQ-----KRGGDVQRRELDEVVDNGDSPNPDLL-LDLDEALEQ-LFSLSPRQARLVELRFFAGLSNDEIA 158
|
170 180
....*....|....*....|....*..
gi 489327667 160 EILNIPVGTVKTRIHRGREALRKQLRD 186
Cdd:pfam07638 159 ERLGVSERTVERNWALARAWLHRELRD 185
|
|
| PRK12525 |
PRK12525 |
RNA polymerase sigma factor; Provisional |
37-175 |
6.58e-08 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 139037 [Multi-domain] Cd Length: 168 Bit Score: 49.94 E-value: 6.58e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 37 RMLGNVHEAEDIAQEAFIRAYVNIDSFDInRKFSTWLYRIATNLTIDRIRKKkpdyylDAEVAGTEGLTMYSQIVADGvl 116
Cdd:PRK12525 28 RQLGCPHSAEDIASETFLQVLALPDPASI-REPRALLTTIARRLMYEGWRRQ------DLERAYLQSLAEAPEAVQPS-- 98
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 489327667 117 PEDAVVSLELSNTIQQKILKLPDKYRTVIVLKYIDELSLIEIGEILNIPVGtvktRIHR 175
Cdd:PRK12525 99 PEEQWMVIETLLAIDRLLDGLSGKARAAFLMSQLEGLTYVEIGERLGVSLS----RIHQ 153
|
|
| PRK09047 |
PRK09047 |
RNA polymerase factor sigma-70; Validated |
39-187 |
1.26e-07 |
|
RNA polymerase factor sigma-70; Validated
Pssm-ID: 236367 [Multi-domain] Cd Length: 161 Bit Score: 48.81 E-value: 1.26e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 39 LGNVHEAEDIAQEAFIRayvnidsfdINRKFST-----W---LYRIATNLTIDRIRKKK---------PDYYLDAEVAGT 101
Cdd:PRK09047 1 VRDDDAALDIVQDAMIK---------LAEKYGDrpaaeWpplFQRILQNRIHDWFRRQKvrntwvslfSSFSDDDDDDDF 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 102 EGLTMYSQIVADGVLPEDAVVSLELSNTIQQKILKLPDKYRTVIVLKYIDELSLIEIGEILNIPVGTVKTRIHRGREALR 181
Cdd:PRK09047 72 DPLETLDSADEGAESPADKLERAQVLQLIEEAIQKLPARQREAFLLRYWEDMDVAETAAAMGCSEGSVKTHCSRATHALA 151
|
....*.
gi 489327667 182 KQLRDL 187
Cdd:PRK09047 152 KALEAK 157
|
|
| PRK12530 |
PRK12530 |
RNA polymerase sigma factor; Provisional |
45-89 |
3.83e-07 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237128 [Multi-domain] Cd Length: 189 Bit Score: 48.22 E-value: 3.83e-07
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 489327667 45 AEDIAQEAFIRAYVNIDSFDINRKFSTWLYRIATNLTIDRIRKKK 89
Cdd:PRK12530 34 AEDVVQEALVSAYKNADSFKGQSALKTWIFAILKNKIIDLIRYRK 78
|
|
| PRK07670 |
PRK07670 |
FliA/WhiG family RNA polymerase sigma factor; |
102-164 |
1.16e-06 |
|
FliA/WhiG family RNA polymerase sigma factor;
Pssm-ID: 181075 [Multi-domain] Cd Length: 251 Bit Score: 47.35 E-value: 1.16e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489327667 102 EGLTMYSQIVAD-GVLPEDAVVSLELSNTIQQKILKLPDKYRTVIVLKYIDELSLIEIGEILNI 164
Cdd:PRK07670 166 DGENVSVTIRDDkTPTPEEKLLKEELIEELAEKIKQLSEKEQLVISLFYKEELTLTEIGQVLNL 229
|
|
| PRK12535 |
PRK12535 |
RNA polymerase sigma factor; Provisional |
14-180 |
1.18e-06 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237130 [Multi-domain] Cd Length: 196 Bit Score: 46.81 E-value: 1.18e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 14 KGDQDAFADIVDIYKDKIYQLCYRmLGNVHEAEDIAQEAFIRAYVNIDSFDINRKFSTWLYRIATNLTIDRIR------- 86
Cdd:PRK12535 21 RGDRAALTEFIRETQDDVWRLLAH-LGGHDIADDLTQETYLRVMSALPRFAARSSARTWLLSLARRVWVDNIRhdmarpr 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 87 KKKPDYY-LDAEVAGTEGLTMYSQIVadgvlpedavvslelsnTIQQKILKLPDKYRTVIVLKYIDELSLIEIGEILNIP 165
Cdd:PRK12535 100 KSATEYEdAAATTASNETTGSWSEWI-----------------DVRTLIDALPPERREALILTQVLGYTYEEAAKIADVR 162
|
170
....*....|....*
gi 489327667 166 VGTVKTRIHRGREAL 180
Cdd:PRK12535 163 VGTIRSRVARARADL 177
|
|
| PRK08295 |
PRK08295 |
RNA polymerase sporulation sigma factor SigH; |
9-186 |
1.56e-06 |
|
RNA polymerase sporulation sigma factor SigH;
Pssm-ID: 181361 [Multi-domain] Cd Length: 208 Bit Score: 46.44 E-value: 1.56e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 9 IKQVKKGDQDAFADIVDIYKDKIYQLCYRMLGNVHEAEDIAQEAFIRAYVNIDSFDINR--KFSTWLYRIATNLTIDRI- 85
Cdd:PRK08295 15 VELARSGDKEALEYLIEKYKNFVRAKARSYFLIGADREDIVQEGMIGLYKAIRDYDKDKlsSFKSFAELCITRQIITAIk 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 86 ---RKK-----------KPDYylDAEVAGTEGLTMYSQIVADgvlPEDAVVSLELSNTIQQKILK-LPDKYRTVIVLkYI 150
Cdd:PRK08295 95 tanRQKhiplnsyvsldKPIY--DEESDRTLLDVISEAKVTD---PEELIISKEELEDIEEKIEElLSELEKEVLEL-YL 168
|
170 180 190
....*....|....*....|....*....|....*.
gi 489327667 151 DELSLIEIGEILNIPVGTVKTRIHRGREALRKQLRD 186
Cdd:PRK08295 169 DGKSYQEIAEELNRHVKSIDNALQRVKRKLEKYLEN 204
|
|
| COG4941 |
COG4941 |
Predicted RNA polymerase sigma factor, contains C-terminal TPR domain [Transcription]; |
37-87 |
3.51e-05 |
|
Predicted RNA polymerase sigma factor, contains C-terminal TPR domain [Transcription];
Pssm-ID: 443968 [Multi-domain] Cd Length: 412 Bit Score: 43.16 E-value: 3.51e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 489327667 37 RMLGNVHEAEDIAQEAFIRAYVN--IDSfdINRKFSTWLYRIATNLTIDRIRK 87
Cdd:COG4941 25 RRFGDLDLAEDAVQDAFLAALEQwpRDG--VPDNPAAWLYTVARRRAIDRLRR 75
|
|
| PRK09651 |
PRK09651 |
RNA polymerase sigma factor FecI; Provisional |
37-178 |
3.94e-05 |
|
RNA polymerase sigma factor FecI; Provisional
Pssm-ID: 182018 [Multi-domain] Cd Length: 172 Bit Score: 42.10 E-value: 3.94e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 37 RMLGNVHEAEDIAQEAFIRAYVNiDSFDINRKFSTWLYRIATNLTIDRIRKKKpdyyldAEVAGTEGLTMYSQIVADGvl 116
Cdd:PRK09651 29 RKLQSAFDADDIAQDTFLRVMVS-ETLSTIRDPRSFLCTIAKRVMVDLFRRNA------LEKAYLEMLALMPEGGAPS-- 99
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489327667 117 PEDAVVSLELSNTIQQKILKLPDKYRTVIVLKYIDELSLIEIGEILNIPVGTVKTRIHRGRE 178
Cdd:PRK09651 100 PEERESQLETLQLLDSMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSVSSVKKYVAKATE 161
|
|
| PRK06704 |
PRK06704 |
RNA polymerase subunit sigma-70; |
35-181 |
7.45e-05 |
|
RNA polymerase subunit sigma-70;
Pssm-ID: 180663 [Multi-domain] Cd Length: 228 Bit Score: 41.93 E-value: 7.45e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 35 CYRMLGNVHEAEDIAQEAFIRAYVNIDSFDInrkFSTWLYRIATNLTIDRIRKKKPDYYLDAEVAGTEGltmySQIVADg 114
Cdd:PRK06704 34 CTFLTKNKWDGEDLAQETVCKVLQKYSNKDI---CMTLVYKIARNRWLDQIKSKSVHEKIRDQITFEEP----HEKIAD- 105
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489327667 115 vLPEDAVVSLELSNTIQQKILKLPDkyrtviVLKYidelSLIEIGEILNIPVGTVKTRIHRGREALR 181
Cdd:PRK06704 106 -LHEMVGKVLSSLNVQQSAILLLKD------VFQY----SIADIAKVCSVSEGAVKASLFRSRNRLK 161
|
|
| PRK12536 |
PRK12536 |
RNA polymerase sigma factor; Provisional |
44-186 |
8.39e-05 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237131 [Multi-domain] Cd Length: 181 Bit Score: 41.19 E-value: 8.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 44 EAEDIAQEAFIRAYVNIDSFDINRKFSTWLYRIATNLTIDRIRKKKpdyyldAEVAGTEGLTMYSQIVADgvlPED--AV 121
Cdd:PRK12536 48 EVEDLVQEILLAVHNARHTYRADQPLTAWVHAIARYKLMDFLRSRA------RREALHDPLDDESELFAT---SDDeaAE 118
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 489327667 122 VSLELSNTIQQkilkLPDKYRTVIVLKYIDELSLIEIGEILNIPVGTVKTRIHRGREALRKQLRD 186
Cdd:PRK12536 119 ARRDLGKLLEQ----LPDRQRLPIVHVKLEGLSVAETAQLTGLSESAVKVGIHRGLKALAAKIRG 179
|
|
| PRK06288 |
PRK06288 |
RNA polymerase sigma factor WhiG; Reviewed |
117-164 |
1.17e-04 |
|
RNA polymerase sigma factor WhiG; Reviewed
Pssm-ID: 235770 [Multi-domain] Cd Length: 268 Bit Score: 41.60 E-value: 1.17e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 489327667 117 PEDAVVSLELSNTIQQKILKLPDKYRTVIVLKYIDELSLIEIGEILNI 164
Cdd:PRK06288 193 PDEIAEREEIKRVIVEAIKTLPEREKKVLILYYYEDLTLKEIGKVLGV 240
|
|
| PRK12529 |
PRK12529 |
RNA polymerase sigma factor; Provisional |
34-176 |
2.04e-04 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183574 [Multi-domain] Cd Length: 178 Bit Score: 40.30 E-value: 2.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 34 LCYRMLGNVHE-AEDIAQEAFIRAYVN--IDSFDINRKFSTWLYRIATNLTIDRIRKKKpdyyldAEVAGTEGLTMYSQI 110
Cdd:PRK12529 30 LAYRLRSWGRGvADDLAHDIFLRILASrdGGQREAIRQPRAYLARIANCVLVSWRRRQS------LELAWLEALATLPEP 103
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489327667 111 VADGvlPEDAVVSLELSNTIQQKILKLPDKYRTVIVLKYIDELSLIEIGEILNIPVGTVKTRIHRG 176
Cdd:PRK12529 104 LHPS--PEQQSVILETLHEIDALLDTLRPRVKQAFLMATLDGMKQKDIAQALDIALPTVKKYIHQA 167
|
|
| fliA |
PRK06986 |
flagellar biosynthesis sigma factor; Validated |
117-164 |
3.74e-04 |
|
flagellar biosynthesis sigma factor; Validated
Pssm-ID: 235901 [Multi-domain] Cd Length: 236 Bit Score: 39.83 E-value: 3.74e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 489327667 117 PEDAVVSLELSNTIQQKILKLPDKYRTVIVLKYIDELSLIEIGEILNI 164
Cdd:PRK06986 165 PLQQLEDEELREALVEAIESLPEREQLVLSLYYQEELNLKEIGAVLGV 212
|
|
| HTH_16 |
pfam12645 |
Helix-turn-helix domain; This domain appears to be a helix-turn-helix domain suggesting that ... |
9-64 |
1.03e-03 |
|
Helix-turn-helix domain; This domain appears to be a helix-turn-helix domain suggesting that this might be a transcriptional regulatory protein. Some members of this family are annotated as conjugative transposon domains.
Pssm-ID: 463654 Cd Length: 65 Bit Score: 36.05 E-value: 1.03e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489327667 9 IKQVKKGDQDAFADIVDIYKDKIYQLCYRML----GNVHE--AEDIAQEAFIRAYVNIDSFD 64
Cdd:pfam12645 4 IEKAVNGDEEAIEEILKHYEPYIRKLSLRTLydedGNVNGyvDEDLKQELEIKLIEAILKFD 65
|
|
| PRK05911 |
PRK05911 |
RNA polymerase sigma factor sigma-28; Reviewed |
119-174 |
1.59e-03 |
|
RNA polymerase sigma factor sigma-28; Reviewed
Pssm-ID: 235644 [Multi-domain] Cd Length: 257 Bit Score: 38.06 E-value: 1.59e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 489327667 119 DAVVSLELSNTIQQKILKLPDKYRTVIVLKYIDELSLIEIGEILNIPVGTVkTRIH 174
Cdd:PRK05911 188 DVVDKKEFSSILAEAILALEEKERKVMALYYYEELVLKEIGKILGVSESRV-SQIH 242
|
|
| PRK12523 |
PRK12523 |
RNA polymerase sigma factor; Reviewed |
17-176 |
2.13e-03 |
|
RNA polymerase sigma factor; Reviewed
Pssm-ID: 183572 [Multi-domain] Cd Length: 172 Bit Score: 37.14 E-value: 2.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 17 QDAFADIVD-IYKDK---IYQLCYRMLGNVHEAEDIAQEAFIRaYVNIDSFDINRKFSTWLYRIATNLTIDRIRKKKpdy 92
Cdd:PRK12523 5 QSPHSELVGaLYRDHrgwLLAWLRRNVACRQRAEDLSQDTFVR-LLGRPELPTPREPRAFLAAVAKGLMFDHFRRAA--- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 93 yldAEVAGTEGLTMYSQivADGVLPEDAVVSLELSNTIQQKILKLPDKYRTVIVLKYIDELSLIEIGEILNIPVGTVKTR 172
Cdd:PRK12523 81 ---LEQAYLAELALVPE--AEQPSPEEQHLILEDLKAIDRLLGKLSSKARAAFLYNRLDGMGHAEIAERLGVSVSRVRQY 155
|
....
gi 489327667 173 IHRG 176
Cdd:PRK12523 156 LAQG 159
|
|
| PRK12528 |
PRK12528 |
RNA polymerase sigma factor; Provisional |
37-181 |
2.56e-03 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 171561 [Multi-domain] Cd Length: 161 Bit Score: 36.75 E-value: 2.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 37 RMLGNVHEAEDIAQEAFIRAYVNIDSFDIN--RKFstwLYRIATNLTIDRIRKKkpdyylDAEVAGTEGLTMYSQIVADG 114
Cdd:PRK12528 23 RRLGCPQSAADLAQDTFVKVLVARETAQIIepRAF---LTTIAKRVLCNHYRRQ------DLERAYLEALAQLPERVAPS 93
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489327667 115 vlPEDAVVSLELSNTIQQKILKLPDKYRTVIVLKYIDELSLIEIGEILNIPVGTVKTriHRGREALR 181
Cdd:PRK12528 94 --EEERAIILETLVELDQLLDGLPPLVKRAFLLAQVDGLGYGEIATELGISLATVKR--YLNKAAMR 156
|
|
| RpoD |
COG0568 |
DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Transcription]; DNA-directed RNA ... |
77-164 |
6.33e-03 |
|
DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Transcription]; DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) is part of the Pathway/BioSystem: RNA polymerase
Pssm-ID: 440334 [Multi-domain] Cd Length: 268 Bit Score: 36.18 E-value: 6.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489327667 77 ATNLTIDRIRK----KKPDYYLDAEVAGTEGLTMYSQIVADG-VLPEDAVVSLELSNTIQQKILKLPDKYRTVIVLKYI- 150
Cdd:COG0568 142 ELGVPEEKVREmlrlAREPVSLDAPVGDDEDSELGDLLEDEEaPSPEEALEEELLREELREALDTLTEREREILRLRFGl 221
|
90
....*....|....*..
gi 489327667 151 ---DELSLIEIGEILNI 164
Cdd:COG0568 222 ddgEPHTLEEIGKEFGV 238
|
|
| |
