|
Name |
Accession |
Description |
Interval |
E-value |
| YobN |
COG1231 |
Monoamine oxidase [Amino acid transport and metabolism]; |
26-452 |
2.90e-90 |
|
Monoamine oxidase [Amino acid transport and metabolism];
Pssm-ID: 440844 [Multi-domain] Cd Length: 440 Bit Score: 282.58 E-value: 2.90e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489209963 26 KQPTAIVVGAGLAGLSAAYELQKDGWQVTVLEARPQVGGR--------SGLAT---SEWVGNQkvQPTLNAYLDTFKLKP 94
Cdd:COG1231 6 RGKDVVIVGAGLAGLAAARELRKAGLDVTVLEARDRVGGRvwtlrfgdDGLYAelgAMRIPPS--HTNLLALARELGLPL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489209963 95 VPAPDFVRTPSYLIDGLYYSSSDLALKQPNVAADLKRFestLDDLSASISDPLNPASsntlfALDQMNAARWLDKLNLSP 174
Cdd:COG1231 84 EPFPNENGNALLYLGGKRVRAGEIAADLRGVAELLAKL---LRALAAALDPWAHPAA-----ELDRESLAEWLRRNGASP 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489209963 175 TARLLVNQRIRSRY-DEPSRLSLLYLAQQGRAYRGVDDRDlraaRLPGGSQVLAEAFVKQIK-TIKTKSKVSSIVQAKDG 252
Cdd:COG1231 156 SARRLLGLLGAGEYgADPDELSLLDLLRYAASAGGGAQQF----RIVGGMDQLPRALAAELGdRIRLGAPVTRIRQDGDG 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489209963 253 VAVK-AGSETYKADYVVLAVPLKALGQIQMTPSLSGTQMSALKGTNYGWRDQILLKFKRPVWDDKSRLSGEIFSDQGLGM 331
Cdd:COG1231 232 VTVTtDDGGTVRADAVIVTVPPSVLRRIEFDPPLPAAKRAAIQRLPYGAAIKVFLQFDRPFWEEDGLYGGISLTDLPIRQ 311
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489209963 332 IW-VEPALKGGANVLIN-LSGDNARVLQAFGDRQMVDQVLIRMNKFYPKMRGAFAGYEIRRYSADPGTGGSYLAYGPGQV 409
Cdd:COG1231 312 TWyPSNGPDGGAGVLLGyVGGDDARALAALSPEERVAAALEQLARIFGVYAAEPVDYVSTDWGRDPWSRGAYAAAPPGQL 391
|
410 420 430 440
....*....|....*....|....*....|....*....|...
gi 489209963 410 TRFWRIWEQPLSRVAFAGEHTDALYPGTIEGALRSGKRAASQV 452
Cdd:COG1231 392 TAAGPALAEPDGRIHFAGEHTSDEWPGWVEGALESGERAAAEI 434
|
|
| Amino_oxidase |
pfam01593 |
Flavin containing amine oxidoreductase; This family consists of various amine oxidases, ... |
37-452 |
5.60e-50 |
|
Flavin containing amine oxidoreductase; This family consists of various amine oxidases, including maze polyamine oxidase (PAO)and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation; these include various neurotransmitters, neurotoxins and trace amines. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium. PAOs in plants, bacteria and protozoa oxidase spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.
Pssm-ID: 396255 [Multi-domain] Cd Length: 446 Bit Score: 176.91 E-value: 5.60e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489209963 37 LAGLSAAYELQKDGWQVTVLEARPQVGGRsglATSEWVGNQKV----------QPTLNAYLDTFKLKPVPA-PDFVRTPS 105
Cdd:pfam01593 1 LAGLAAARELLRAGHDVTVLEARDRVGGR---IRTVRDDGFLIelgamwfhgaQPPLLALLKELGLEDRLVlPDPAPFYT 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489209963 106 YLIDGLYYSSSDLaLKQPNVAADLKRFESTLDdLSASISDPLNPASSNTLFALDQMN---AARWLDKLNLSPTARLLVNQ 182
Cdd:pfam01593 78 VLFAGGRRYPGDF-RRVPAGWEGLLEFGRLLS-IPEKLRLGLAALASDALDEFDLDDfslAESLLFLGRRGPGDVEVWDR 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489209963 183 RIRSRYDEPSRLSLLYLAQQGRAY---------RGVDDRDLRAARLPGGSQVLAEAFVKQI--KTIKTKSKVSSIVQAKD 251
Cdd:pfam01593 156 LIDPELFAALPFASGAFAGDPSELsaglalpllWALLGEGGSLLLPRGGLGALPDALAAQLlgGDVRLNTRVRSIDREGD 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489209963 252 GVAVK-AGSETYKADYVVLAVPLKALGQIQMTPSLSGTQMSALKGTNYGWRDQILLKFKRPVWDDKSR--LSGEIFSDQG 328
Cdd:pfam01593 236 GVTVTlTDGEVIEADAVIVTVPLGVLKRILFTPPLPPEKARAIRNLGYGPVNKVHLEFDRKFWPDLGLlgLLSELLTGLG 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489209963 329 LGMIWVE-PALKGGANVLINLS----GDNARVLQAFGDRQMVDQVLIRMNKFYPKMRGAFAGYEIRRYSADPGTGGSYLA 403
Cdd:pfam01593 316 TAFSWLTfPNRAPPGKGLLLLVyvgpGDRARELEGLSDEELLQAVLRDLRKLFGEEAPEPLRVLVSDWHTDPWPRGSYSL 395
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|
gi 489209963 404 YGPGQVTRFWRIW-EQPLSRVAFAGEHTDALYPGTIEGALRSGKRAASQV 452
Cdd:pfam01593 396 PQYGPGHDDYRPLaRTPDPGLFFAGEHTSTGYPGTVEGAIESGRRAARAV 445
|
|
| PLN03000 |
PLN03000 |
amine oxidase |
5-452 |
6.76e-25 |
|
amine oxidase
Pssm-ID: 178578 [Multi-domain] Cd Length: 881 Bit Score: 108.95 E-value: 6.76e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489209963 5 WLRAAAFLMLGVFSAValgKDKQPT------AIVVGAGLAGLSAAYELQKDGWQVTVLEARPQVGGR--------SGLAT 70
Cdd:PLN03000 159 YLVTHGYINFGIAQAI---KDKFPAqsskssVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRvytkkmeaNRVGA 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489209963 71 SEWVGNQKVQPTLNAYLDTFKLKPVPAPDFVR--TPSYLIDGlYYSSSDLALKqpnVAADLKRF-------ESTLDDLSA 141
Cdd:PLN03000 236 AADLGGSVLTGTLGNPLGIIARQLGSSLYKVRdkCPLYRVDG-KPVDPDVDLK---VEVAFNQLldkasklRQLMGDVSM 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489209963 142 SIS-----DPLNPASSNTLfALDQMNAARW-LDKLNLSpTARLLvnqrirsrydepSRLSLLYLAQQGRAYRGVDDrdlr 215
Cdd:PLN03000 312 DVSlgaalETFRQVSGNDV-ATEEMGLFNWhLANLEYA-NAGLV------------SKLSLAFWDQDDPYDMGGDH---- 373
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489209963 216 aARLPGGSQVLAEAFVKQIKTIKTKSkVSSIVQAKDGVAVKAGSETYKADYVVLAVPLKAL--GQIQMTPSLSGTQMSAL 293
Cdd:PLN03000 374 -CFLPGGNGRLVQALAENVPILYEKT-VQTIRYGSNGVKVIAGNQVYEGDMVLCTVPLGVLknGSIKFVPELPQRKLDCI 451
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489209963 294 KGTNYGWRDQILLKFKRPVW-----------DDKSRlSGEIFsdqglgMIWVEPALKGGANVLINLSGDNARVLQAFGDR 362
Cdd:PLN03000 452 KRLGFGLLNKVAMLFPYVFWstdldtfghltEDPNY-RGEFF------LFYSYAPVAGGPLLIALVAGEAAHKFETMPPT 524
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489209963 363 QMVDQVLIRMNKFYpKMRGAFAGYEIR----RYSADPGTGGSYLAYGPGQVTRFWRIWEQPLS--RVAFAGEHTDALYPG 436
Cdd:PLN03000 525 DAVTRVLHILRGIY-EPQGINVPDPLQtvctRWGGDPFSLGSYSNVAVGASGDDYDILAESVGdgRLFFAGEATTRRYPA 603
|
490
....*....|....*.
gi 489209963 437 TIEGALRSGKRAASQV 452
Cdd:PLN03000 604 TMHGAFVTGLREAANM 619
|
|
| COG3349 |
COG3349 |
Uncharacterized protein, contains NAD-binding domain and a Fe-S cluster [General function ... |
27-454 |
1.62e-23 |
|
Uncharacterized protein, contains NAD-binding domain and a Fe-S cluster [General function prediction only];
Pssm-ID: 442577 [Multi-domain] Cd Length: 445 Bit Score: 103.01 E-value: 1.62e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489209963 27 QPTAIVVGAGLAGLSAAYELQKDGWQVTVLEARPQVGGRsglATSeWVGNQKVQPTLN----------AYLDTFKLKPVp 96
Cdd:COG3349 3 PPRVVVVGGGLAGLAAAVELAEAGFRVTLLEARPRLGGR---ARS-FPDPDTGLPIDNgqhvllgcyrNTLDLLRRIGA- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489209963 97 APDFVRTPSYLI---DGLYYSSSDLALKQP-NVAADLKRFE--STLDDLSASisdPLNPASSNTLF-ALDQMNAARWLDK 169
Cdd:COG3349 78 ADNLVGPEPLQFplpGGRRWTLRAPRLPAPlHLLRALLRAPglSLADRLALL---RLLTACRERRWrELDDISVADWLRR 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489209963 170 LNLS---------PTARLLVNQRirsrydePSRLSLLYLAQQGR--AYRGVDDRDLRAARLPggsqvLAEAFVKQIK--- 235
Cdd:COG3349 155 HGQSprlirrlwePLLLAALNTP-------PEQASARLALTVLRetLLAGPAASDLLVPRGP-----LSELFVDPALayl 222
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489209963 236 -----TIKTKSKVSSIVQAKDGV--AVKAGSETYKADYVVLAVP-------LKALGQIQMTPSLSGTQMSALKGTNYgWR 301
Cdd:COG3349 223 earggEVRLGTRVRALEFDGGRVtgLVLADGETVPADAVVLAVPpevaarlLPELARLPELGLLAPLEYSPIVNVHL-WL 301
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489209963 302 DQILLKFKRPVWDDKSRLSGEIFSDQGlgmiwvepALKGGANVL-INLSGdnARVLQAFGDRQMVDQVLIRMNKFYPKMR 380
Cdd:COG3349 302 DRPVTLGPPPFAGLVGSTSQWVFDRGA--------GDGGQGGVLsVVISA--ADRLLDLSREELAAEVWAELAALLPAAR 371
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489209963 381 GAFA-GYEIRR-----YSADPGTggsyLAYGPGQVTrfwriweqPLSRVAFAGEHTDALYPGTIEGALRSGKRAASQVRD 454
Cdd:COG3349 372 EALPvWSRVVRekratFAATPGS----DRLRPGART--------PIPNLFLAGDWTATGLPATMEGAVRSGRRAANAILA 439
|
|
| PLN02328 |
PLN02328 |
lysine-specific histone demethylase 1 homolog |
26-452 |
1.76e-23 |
|
lysine-specific histone demethylase 1 homolog
Pssm-ID: 215187 [Multi-domain] Cd Length: 808 Bit Score: 104.30 E-value: 1.76e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489209963 26 KQPTAIVVGAGLAGLSAAYELQKDGWQVTVLEARPQVGGR--------SGLATSEWVGNQkVQPTLNAYLDTFKLKPVPA 97
Cdd:PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRvktmkmkgDGVVAAADLGGS-VLTGINGNPLGVLARQLGL 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489209963 98 P-DFVR--TPSYLIDGLYYSSSdlalKQPNVAADLKRFESTLDDLSASISDPLNPASSNTLFALDqmnAARWLDKLNLSP 174
Cdd:PLN02328 316 PlHKVRdiCPLYLPDGKAVDAE----IDSKIEASFNKLLDRVCKLRQAMIEEVKSVDVNLGTALE---AFRHVYKVAEDP 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489209963 175 TARLLVNQRIRS-RYDEPSRLSLLYLA--QQGRAYRGVDDRDLraarLPGGSQVLAEAFVKQIKtIKTKSKVSSIVQAKD 251
Cdd:PLN02328 389 QERMLLNWHLANlEYANASLMSNLSMAywDQDDPYEMGGDHCF----IPGGNDTFVRELAKDLP-IFYERTVESIRYGVD 463
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489209963 252 GVAVKAGSETYKADYVVLAVPLKAL--GQIQMTPSLSGTQMSALKGTNYGWRDQILLKFKRPVWDDKSRLSGEIFSDQGL 329
Cdd:PLN02328 464 GVIVYAGGQEFHGDMVLCTVPLGVLkkGSIEFYPELPQRKKDAIQRLGYGLLNKVALLFPYNFWGGEIDTFGHLTEDPSM 543
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489209963 330 G----MIWVEPALKGGANVLINLSGDNARVLQAFGDRQMVDQVL-IRMNKFYPKmrGAFAGYEIR----RYSADPGTGGS 400
Cdd:PLN02328 544 RgeffLFYSYSSVSGGPLLIALVAGDAAVKFETLSPVESVKRVLqILRGIFHPK--GIVVPDPVQavctRWGKDCFTYGS 621
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....
gi 489209963 401 YLAYGPGQVTRFWRIWEQPLS--RVAFAGEHTDALYPGTIEGALRSGKRAASQV 452
Cdd:PLN02328 622 YSYVAVGSSGDDYDILAESVGdgRVFFAGEATNKQYPATMHGAFLSGMREAANI 675
|
|
| HemY |
COG1232 |
Protoporphyrinogen oxidase HemY/PPOX [Coenzyme transport and metabolism]; Protoporphyrinogen ... |
27-454 |
2.40e-19 |
|
Protoporphyrinogen oxidase HemY/PPOX [Coenzyme transport and metabolism]; Protoporphyrinogen oxidase HemY/PPOX is part of the Pathway/BioSystem: Heme biosynthesis
Pssm-ID: 440845 [Multi-domain] Cd Length: 443 Bit Score: 90.28 E-value: 2.40e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489209963 27 QPTAIVVGAGLAGLSAAYELQKDGWQVTVLEARPQVGGRSglATSEWVGNQ---------KVQPTLNAYLDTFKLkpvpA 97
Cdd:COG1232 1 MKRVAVIGGGIAGLTAAYRLAKAGHEVTVLEASDRVGGLI--RTVEVDGFRidrgphsflTRDPEVLELLRELGL----G 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489209963 98 PDFVRTPS----YLIDGLYYsssdlALKQPNVAADLKRFESTLDDLSAsISDPLNPASSntlfALDQMNAARWLdklnls 173
Cdd:COG1232 75 DELVWPNTrksyIYYGGKLH-----PLPQGPLALLRSPLLSLAGKLRA-LLELLAPRRP----PGEDESLAEFV------ 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489209963 174 pTARLlvNQRIRSR----------YDEPSRLSLLYLAQQ----GRAYRGVddrdLRAAR--------------LPGGSQV 225
Cdd:COG1232 139 -RRRF--GREVYERlvepllegvyAGDPDELSADWAFPRlkrlELEHGSL----IKGALalrkgakagevfgyLRGGLGT 211
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489209963 226 LAEAFVKQIK--TIKTKSKVSSIVQAKDGVAVKAGS-ETYKADYVVLAVPLKALgqIQMTPSLSGTQMSALKGTNYgwRD 302
Cdd:COG1232 212 LVEALAEALEagEIRLGTRVTAIEREGGGWRVTTSDgETIEADAVVSATPAPAL--ARLLAPLPPEVAAALAGIPY--AS 287
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489209963 303 QIL--LKFKRPVWDDKsRLSGEIFS-DQG---LGMIWVE---PALKGGANVLINLS----GDNARVLQAfgDRQMVDQV- 368
Cdd:COG1232 288 VAVvaLGFDRPDLPPP-DGFGWLVPrDEGvpiLAVTFSSnkwPHRAPDGKVLLRLEvggaGDPELWQLS--DEELVALAl 364
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489209963 369 --LIRMNkfypKMRGAFAGYEIRRYsadpgtGGSYLAYGPGQVTRFWRI--WEQPLSRVAFAGehtdALYPGT-IEGALR 443
Cdd:COG1232 365 adLRKLL----GIDAEPVDTRVVRW------PKAYPQYTVGHLERVAAIreALAALPGLYLAG----RAYDGVgLPDCIR 430
|
490
....*....|.
gi 489209963 444 SGKRAASQVRD 454
Cdd:COG1232 431 SGREAAERILA 441
|
|
| COG1233 |
COG1233 |
Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and ... |
26-276 |
2.17e-18 |
|
Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 440846 [Multi-domain] Cd Length: 491 Bit Score: 87.60 E-value: 2.17e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489209963 26 KQPTAIVVGAGLAGLSAAYELQKDGWQVTVLEARPQVGGRSGLAT---------SEWVGNQKVQPTLNAYL---DTFKLK 93
Cdd:COG1233 2 MMYDVVVIGAGIGGLAAAALLARAGYRVTVLEKNDTPGGRARTFErpgfrfdvgPSVLTMPGVLERLFRELgleDYLELV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489209963 94 PVPAPDFVRTPsyliDG--LYYSSSDLALKQ------PNVAADLKRFESTLDDLSA------------SISDPLNPASSN 153
Cdd:COG1233 82 PLDPAYRVPFP----DGraLDLPRDLERTAAelerlfPGDAEAYRRFLAELRRLYDalledllyrpllSLRDLLRPLALA 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489209963 154 TLFALDQMNAARWLDKLNLSPTARLLVnqrirSRY-----DEPSRLSLLYLAqqgrayRGVDDRDLRAARLPGGSQVLAE 228
Cdd:COG1233 158 RLLRLLLRSLRDLLRRYFKDPRLRALL-----AGQalylgLSPDRTPALYAL------IAYLEYAGGVWYPKGGMGALAD 226
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 489209963 229 AFVKQIK----TIKTKSKVSSIVQAKD---GVAVKAGsETYKADYVVLAVPLKAL 276
Cdd:COG1233 227 ALARLAEelggEIRTGAEVERILVEGGratGVRLADG-EEIRADAVVSNADPAHT 280
|
|
| PLN02268 |
PLN02268 |
probable polyamine oxidase |
28-453 |
2.72e-17 |
|
probable polyamine oxidase
Pssm-ID: 177909 [Multi-domain] Cd Length: 435 Bit Score: 83.97 E-value: 2.72e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489209963 28 PTAIVVGAGLAGLSAAYELQKDGWQVTVLEARPQVGGR----------SGLATSEWVGNQKVQPtLNAYLDTFKLKpvpa 97
Cdd:PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRvhtdysfgfpVDMGASWLHGVCNENP-LAPLIGRLGLP---- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489209963 98 pdfvrtpsylidgLYYSSSDlalkqpnvaadlkrfESTLDDlsasisdplNPASSNTLFALDQMNAARWL-DKLNLSPTA 176
Cdd:PLN02268 76 -------------LYRTSGD---------------NSVLYD---------HDLESYALFDMDGNQVPQELvTKVGETFER 118
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489209963 177 RLLVNQRIRSRYDEPsrLSLL-----------YLAQQGRAYRGVD------------DRDLRAAR-------LPGGSQVL 226
Cdd:PLN02268 119 ILEETEKVRDEHEED--MSLLqaisivlerhpELRLEGLAHEVLQwylcrmegwfaaDADTISLKswdqeelLEGGHGLM 196
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489209963 227 AEAFVKQIKT------IKTKSKVSSIVQAKDGVAVKA-GSETYKADYVVLAVPLKAL--GQIQMTPSLSGTQMSALKGTN 297
Cdd:PLN02268 197 VRGYDPVINTlakgldIRLNHRVTKIVRRYNGVKVTVeDGTTFVADAAIIAVPLGVLkaNIIKFEPELPEWKEEAISDLG 276
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489209963 298 YGWRDQILLKFKRPVWDDKsrlsgeifsdQGLGMiwVEPALKG-----------GANVLINL-SGDNARVLQAFGDRQMV 365
Cdd:PLN02268 277 VGIENKIALHFDSVFWPNV----------EFLGV--VAPTSYGcsyflnlhkatGHPVLVYMpAGRLARDIEKLSDEAAA 344
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489209963 366 DQVLIRMNKFYPkmrGAF--AGYEIRRYSADPGTGGSYLAYGPGQVTRFWRIWEQPLSRVAFAGEHTDALYPGTIEGALR 443
Cdd:PLN02268 345 NFAMSQLKKMLP---DATepVQYLVSRWGSDPNSLGCYSYDLVGKPHDLYERLRAPVDNLFFAGEATSSDFPGSVHGAYS 421
|
490
....*....|
gi 489209963 444 SGKRAASQVR 453
Cdd:PLN02268 422 TGVMAAEECR 431
|
|
| PLN02529 |
PLN02529 |
lysine-specific histone demethylase 1 |
29-452 |
3.81e-17 |
|
lysine-specific histone demethylase 1
Pssm-ID: 178144 [Multi-domain] Cd Length: 738 Bit Score: 84.56 E-value: 3.81e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489209963 29 TAIVVGAGLAGLSAAYELQKDGWQVTVLEARPQVGGRsglatsewVGNQKVQPTlnaylDTFKLkpvpapdfVRTPSYLI 108
Cdd:PLN02529 162 SVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGR--------VYTQKMGRK-----GQFAA--------VDLGGSVI 220
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489209963 109 DGLYYSSSDLALKQPNVAADLKRFESTLDDLSASISDplNPASSNTLFA----LDQMNAARWL-----DKLNLSPTARLL 179
Cdd:PLN02529 221 TGIHANPLGVLARQLSIPLHKVRDNCPLYKPDGALVD--KEIDSNIEFIfnklLDKVTELRQImggfaNDISLGSVLERL 298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489209963 180 VNQRIRSRYDEPSRLSLLYLAQQGRAYRGVDdRDLRAAR---------------LPGGSQVLAEAFVKQIKTIKTKSkVS 244
Cdd:PLN02529 299 RQLYGVARSTEERQLLDWHLANLEYANAGCL-SDLSAAYwdqddpyemggdhcfLAGGNWRLINALCEGVPIFYGKT-VD 376
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489209963 245 SIVQAKDGVAVKAGSETYKADYVVLAVPLKALGQ--IQMTPSLSGTQMSALKGTNYGWRDQILLKFKRPVWDDK------ 316
Cdd:PLN02529 377 TIKYGNDGVEVIAGSQVFQADMVLCTVPLGVLKKrtIRFEPELPRRKLAAIDRLGFGLLNKVAMVFPSVFWGEEldtfgc 456
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489209963 317 ----SRLSGEIFsdqglgMIWVEPALKGGANVLINLSGDNARVLQAFGDRQMVDQVLIRMNKFY-PKmrGAFAGYEIR-- 389
Cdd:PLN02529 457 lnesSNKRGEFF------LFYGYHTVSGGPALVALVAGEAAQRFENTDPSTLLHRVLSVLRGIYnPK--GINVPDPIQti 528
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489209963 390 --RYSADPGTGGSYLAYGPGQVTRFWRIWEQPLS-RVAFAGEHTDALYPGTIEGALRSGKRAASQV 452
Cdd:PLN02529 529 ctRWGSDPLSYGSYSHVRVQSSGSDYDILAESVSgRLFFAGEATTRQYPATMHGAFLSGLREASRI 594
|
|
| HpnE |
TIGR03467 |
squalene-associated FAD-dependent desaturase; The sequences in this family are members of the ... |
41-452 |
1.10e-16 |
|
squalene-associated FAD-dependent desaturase; The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Pssm-ID: 274593 [Multi-domain] Cd Length: 419 Bit Score: 82.03 E-value: 1.10e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489209963 41 SAAYELQKDGWQVTVLEARPQVGGRSGL----ATSEWVGN-QKVqpTLNAYLDTFklkpvpapDFVRT--PSYLIDGLYy 113
Cdd:TIGR03467 1 SAAVELARAGARVTLFEARPRLGGRARSfedgGLGQTIDNgQHV--LLGAYTNLL--------ALLRRigAEPRLQGPR- 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489209963 114 ssSDLALKQPNvaadlkRFESTLDdlsasiSDPLnPASSNTLFALDQMNAARWLDKLNLSPTARLLVNQRIRSRYDEPSR 193
Cdd:TIGR03467 70 --LPLPFYDPG------GRLSRLR------LSRL-PAPLHLARGLLRAPGLSWADKLALARALLALRRTRFRALDDTTVG 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489209963 194 LSLLYLAQQGRAYR---------------------------------GVDDRDLRAARLPGgSQVLAEAFVKQIKT---- 236
Cdd:TIGR03467 135 DWLQAAGQSERLIErlweplllsalntpperasaalaakvlrdsflaGRAASDLLLPRVPL-SELFPEPARRWLDSrgge 213
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489209963 237 IKTKSKVSSIVQAKDGVAVK--AGSETYKADYVVLAVPlkalgQIQMTPSLSGTQMSALKgTNYGWRD--QILLKFKRPV 312
Cdd:TIGR03467 214 VRLGTRVRSIEANAGGIRALvrSGGETLPADAVVLAVP-----PRHAASLLPGEDLGALL-TALGYSPitTVHLRLDRAV 287
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489209963 313 wddksRLSGEIFSDQGLGMIWV--EPALKGGANVL-INLSGdnARVLQAFGDRQMVDQVLIRMNKFYPKMRGA-----FA 384
Cdd:TIGR03467 288 -----RLPAPMVGLVGGLAQWLfdRGQLAGEPGYLaVVISA--ARDLVDLPREELADRIVAELRRAFPRVAGAkplwaRV 360
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489209963 385 GYEIR-RYSADPGTGgsylAYGPGQVTRFWRIWeqplsrvaFAGEHTDALYPGTIEGALRSGKRAASQV 452
Cdd:TIGR03467 361 IKEKRaTFAATPGLN----RLRPGARTPWPNLF--------LAGDWTATGWPATMEGAVRSGYQAAEAV 417
|
|
| PRK07233 |
PRK07233 |
hypothetical protein; Provisional |
32-312 |
3.58e-15 |
|
hypothetical protein; Provisional
Pssm-ID: 235977 [Multi-domain] Cd Length: 434 Bit Score: 77.62 E-value: 3.58e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489209963 32 VVGAGLAGLSAAYELQKDGWQVTVLEARPQVGgrsGLATSEWVGNQKV-----------------------------QPT 82
Cdd:PRK07233 4 IVGGGIAGLAAAYRLAKRGHEVTVFEADDQLG---GLAASFEFGGLPIerfyhhifksdeallelldelgledklrwRET 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489209963 83 LNAYLDTFKLKPVPAP-DFVRTPSY-LIDGLYYsssdlALkqpnVAADLKRfestLDDLSasisdplnpassntlfALDQ 160
Cdd:PRK07233 81 KTGYYVDGKLYPLGTPlELLRFPHLsLIDKFRL-----GL----LTLLARR----IKDWR----------------ALDK 131
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489209963 161 MNAARWLDKLnLSPTA------RLL----------VN-----QRIRSRYDepSRLSllyLAQQGRAYrgvddrdlraarL 219
Cdd:PRK07233 132 VPAEEWLRRW-SGEGVyevfwePLLeskfgdyaddVSaawlwSRIKRRGN--RRYS---LFGEKLGY------------L 193
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489209963 220 PGGSQVLAEAFVKQIK----TIKTKSKVSSIVQAKDGV-AVKAGSETYKADYVVLAVPLKALGqiQMTPSLSGTQMSALK 294
Cdd:PRK07233 194 EGGFATLIDALAEAIEarggEIRLGTPVTSVVIDGGGVtGVEVDGEEEDFDAVISTAPPPILA--RLVPDLPADVLARLR 271
|
330 340
....*....|....*....|..
gi 489209963 295 GTNYgwrdQ----ILLKFKRPV 312
Cdd:PRK07233 272 RIDY----QgvvcMVLKLRRPL 289
|
|
| PLN02676 |
PLN02676 |
polyamine oxidase |
6-449 |
3.08e-14 |
|
polyamine oxidase
Pssm-ID: 215362 [Multi-domain] Cd Length: 487 Bit Score: 74.75 E-value: 3.08e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489209963 6 LRAAAFLMLGVFSAV-ALGKDKQPTAIVVGAGLAGLSAAYELQKDGWQ-VTVLEARPQVGGR------SGLATS------ 71
Cdd:PLN02676 4 LLSLSVLLAVHLFAVaAMDAKPSPSVIIVGAGMSGISAAKTLSEAGIEdILILEATDRIGGRmrkanfAGVSVElganwv 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489209963 72 EWVGNQKVQPTL---NAY-LDTFKlkpvpaPDF--VRTPSYLIDGLYYSSSdLALKQPNVAADLKRF-ESTLDDLSASIS 144
Cdd:PLN02676 84 EGVGGPESNPIWelaNKLkLRTFY------SDFdnLSSNIYKQDGGLYPKK-VVQKSMKVADASDEFgENLSISLSAKKA 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489209963 145 DPLNPASSNTLFAldqmnaarwldklNLSPTARLLVNQRIRSRYD--EPSRLSLLYLAQQGRAYRGVDDRDLRAARLPGG 222
Cdd:PLN02676 157 VDISILTAQRLFG-------------QVPKTPLEMVIDYYNYDYEfaEPPRVTSLKNTEPNPTFVDFGEDEYFVADPRGY 223
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489209963 223 SQV---LAEAFVK----QIKT--IKTKSKVSSIVQAKDGVAVKA--GSeTYKADYVVLAVPLKAL--GQIQMTPSLSGTQ 289
Cdd:PLN02676 224 ESLvyyLAEQFLStksgKITDprLKLNKVVREISYSKNGVTVKTedGS-VYRAKYVIVSVSLGVLqsDLIKFKPPLPDWK 302
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489209963 290 MSALKGTNYGWRDQILLKFKRPVWDDKSRLSGEIFSDQGLGM--IWVE-----PalkgGANVL-INLSGDNARVLQAFGD 361
Cdd:PLN02676 303 IEAIYQFDMAVYTKIFLKFPYKFWPSGPGTEFFLYAHERRGYypFWQHleneyP----GSNVLfVTVTDEESRRIEQQPD 378
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489209963 362 RQM---VDQVLIRM------------------NKFYpkmRGAFAGYEIrRYSAdpgtggsylaygpgqvTRFWRIwEQPL 420
Cdd:PLN02676 379 SETkaeIMEVLRKMfgpnipeatdilvprwwsNRFF---KGSYSNWPI-GVSR----------------YEFDQI-RAPV 437
|
490 500
....*....|....*....|....*....
gi 489209963 421 SRVAFAGEHTDALYPGTIEGALRSGKRAA 449
Cdd:PLN02676 438 GRVYFTGEHTSEKYNGYVHGAYLAGIDTA 466
|
|
| PLN02976 |
PLN02976 |
amine oxidase |
31-474 |
5.15e-11 |
|
amine oxidase
Pssm-ID: 215527 [Multi-domain] Cd Length: 1713 Bit Score: 65.66 E-value: 5.15e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489209963 31 IVVGAGLAGLSAAYELQKDGWQVTVLEARPQVGGR-----SGLAtsewvgnqkVQPTLNAYLDTFKLKPVPA---PDfvr 102
Cdd:PLN02976 697 IVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRvytdrSSLS---------VPVDLGASIITGVEADVATerrPD--- 764
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489209963 103 tPSYLID---GLYYS--SSDLAL----KQPNVAADL-----KRFESTLDDL---------SA---SISDPLNPA-----S 151
Cdd:PLN02976 765 -PSSLICaqlGLELTvlNSDCPLydvvTGEKVPADLdealeAEYNSLLDDMvllvaqkgeHAmkmSLEDGLEYAlkrrrM 843
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489209963 152 SNTLFALDQMNAARWLDKLN--------------------LSPTARLLVNQRI-RSRYDEPSRL---SLLYLAQQ----- 202
Cdd:PLN02976 844 PRPGVDIDETELGNAADDLYdsastgvdgghcekeskedvLSPLERRVMNWHFaHLEYGCAALLkevSLPYWNQDdvygg 923
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489209963 203 -GRAY---RGVDDRDLRAarLPGGSQVLAEAFVKQIKTIKTKSKVSSIVQAKDGVAVKAGSEtYKADYVVLAVPLKALGQ 278
Cdd:PLN02976 924 fGGAHcmiKGGYSNVVES--LAEGLDIHLNHVVTDVSYGSKDAGASGSSRKKVKVSTSNGSE-FLGDAVLITVPLGCLKA 1000
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489209963 279 --IQMTPSLSGTQMSALKGTNYGWRDQILLKFKRPVWDD----------KSRLSGEIFsdqglgMIWvepALKG--GANV 344
Cdd:PLN02976 1001 etIKFSPPLPDWKYSSIQRLGFGVLNKVVLEFPEVFWDDsvdyfgataeETDLRGQCF------MFW---NVKKtvGAPV 1071
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489209963 345 LINL-SGDNARVLQAFGDRQMVDQVLIRMNKFYpkmRGAF----AGYEIRRYSADPGTGGSYLAYGPGQVTRFWRIWEQP 419
Cdd:PLN02976 1072 LIALvVGKAAIDGQSMSSSDHVNHALMVLRKLF---GEALvpdpVASVVTDWGRDPFSYGAYSYVAIGASGEDYDILGRP 1148
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489209963 420 LSR-VAFAGEHTDALYPGTIEGALRSGKRAASQVRDL------YAGKTPVIEGAPMVAKAEK 474
Cdd:PLN02976 1149 VENcLFFAGEATCKEHPDTVGGAMMSGLREAVRIIDIlntgndYTAEVEALETAQRHSESER 1210
|
|
| NAD_binding_8 |
pfam13450 |
NAD(P)-binding Rossmann-like domain; |
32-66 |
2.99e-10 |
|
NAD(P)-binding Rossmann-like domain;
Pssm-ID: 433218 [Multi-domain] Cd Length: 67 Bit Score: 56.00 E-value: 2.99e-10
10 20 30
....*....|....*....|....*....|....*
gi 489209963 32 VVGAGLAGLSAAYELQKDGWQVTVLEARPQVGGRS 66
Cdd:pfam13450 1 IVGAGLAGLVAAALLAKRGFRVLVLEKRDRLGGNA 35
|
|
| crtI_fam |
TIGR02734 |
phytoene desaturase; Phytoene is converted to lycopene by desaturation at four (two ... |
30-67 |
3.42e-10 |
|
phytoene desaturase; Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]
Pssm-ID: 274273 [Multi-domain] Cd Length: 495 Bit Score: 62.29 E-value: 3.42e-10
10 20 30
....*....|....*....|....*....|....*...
gi 489209963 30 AIVVGAGLAGLSAAYELQKDGWQVTVLEARPQVGGRSG 67
Cdd:TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAG 38
|
|
| COG3380 |
COG3380 |
Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]; |
27-70 |
8.29e-10 |
|
Predicted NAD/FAD-dependent oxidoreductase [General function prediction only];
Pssm-ID: 442607 [Multi-domain] Cd Length: 331 Bit Score: 60.28 E-value: 8.29e-10
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 489209963 27 QPTAIVVGAGLAGLSAAYELQKDGWQVTVLEARPQVGGRsgLAT 70
Cdd:COG3380 3 MPDIAIIGAGIAGLAAARALQDAGHEVTVFEKSRGVGGR--MAT 44
|
|
| PRK07208 |
PRK07208 |
hypothetical protein; Provisional |
28-66 |
3.63e-09 |
|
hypothetical protein; Provisional
Pssm-ID: 235967 [Multi-domain] Cd Length: 479 Bit Score: 58.75 E-value: 3.63e-09
10 20 30
....*....|....*....|....*....|....*....
gi 489209963 28 PTAIVVGAGLAGLSAAYELQKDGWQVTVLEARPQVGGRS 66
Cdd:PRK07208 5 KSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGIS 43
|
|
| DadA |
COG0665 |
Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism]; |
31-270 |
1.75e-08 |
|
Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];
Pssm-ID: 440429 [Multi-domain] Cd Length: 364 Bit Score: 56.45 E-value: 1.75e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489209963 31 IVVGAGLAGLSAAYELQKDGWQVTVLEARPQVGGRSGLATSeWVGNQKVQPTLNAYLDTFKLkpvpAPDFVRT------- 103
Cdd:COG0665 6 VVIGGGIAGLSTAYHLARRGLDVTVLERGRPGSGASGRNAG-QLRPGLAALADRALVRLARE----ALDLWRElaaelgi 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489209963 104 -PSYLIDGLYYsssdLALKqpnvAADLKRFESTLDDLSAsisdplnpassntlFALDqmnaARWLDklnlsptarllvnq 182
Cdd:COG0665 81 dCDFRRTGVLY----LART----EAELAALRAEAEALRA--------------LGLP----VELLD-------------- 120
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489209963 183 rirsrydePSRLSLLYLAQQGRAYRGvddrdlrAARLPGGSQV--------LAEAFVKQIKTIKTKSKVSSIVQAKDGV- 253
Cdd:COG0665 121 --------AAELREREPGLGSPDYAG-------GLYDPDDGHVdpaklvraLARAARAAGVRIREGTPVTGLEREGGRVt 185
|
250
....*....|....*..
gi 489209963 254 AVKAGSETYKADYVVLA 270
Cdd:COG0665 186 GVRTERGTVRADAVVLA 202
|
|
| CzcO |
COG2072 |
Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ... |
25-64 |
2.34e-08 |
|
Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ion transport and metabolism];
Pssm-ID: 441675 [Multi-domain] Cd Length: 414 Bit Score: 56.02 E-value: 2.34e-08
10 20 30 40
....*....|....*....|....*....|....*....|
gi 489209963 25 DKQPTAIVVGAGLAGLSAAYELQKDGWQVTVLEARPQVGG 64
Cdd:COG2072 4 TEHVDVVVIGAGQAGLAAAYHLRRAGIDFVVLEKADDVGG 43
|
|
| DAO |
pfam01266 |
FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: ... |
31-67 |
2.66e-08 |
|
FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.
Pssm-ID: 426168 [Multi-domain] Cd Length: 339 Bit Score: 55.48 E-value: 2.66e-08
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 489209963 31 IVVGAGLAGLSAAYELQKDGWQVTVLEARPQVG----GRSG 67
Cdd:pfam01266 3 VVIGGGIVGLSTAYELARRGLSVTLLERGDDPGsgasGRNA 43
|
|
| GltD |
COG0493 |
NADPH-dependent glutamate synthase beta chain or related oxidoreductase [Amino acid transport ... |
32-64 |
9.76e-08 |
|
NADPH-dependent glutamate synthase beta chain or related oxidoreductase [Amino acid transport and metabolism, General function prediction only]; NADPH-dependent glutamate synthase beta chain or related oxidoreductase is part of the Pathway/BioSystem: Glutamine biosynthesis
Pssm-ID: 440259 [Multi-domain] Cd Length: 434 Bit Score: 54.37 E-value: 9.76e-08
10 20 30
....*....|....*....|....*....|...
gi 489209963 32 VVGAGLAGLSAAYELQKDGWQVTVLEARPQVGG 64
Cdd:COG0493 126 VVGSGPAGLAAAYQLARAGHEVTVFEALDKPGG 158
|
|
| PLN02568 |
PLN02568 |
polyamine oxidase |
26-77 |
1.04e-07 |
|
polyamine oxidase
Pssm-ID: 215308 [Multi-domain] Cd Length: 539 Bit Score: 54.45 E-value: 1.04e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 489209963 26 KQPTAIVVGAGLAGLSAAYEL-----QKDGWQVTVLEARPQVGGRsgLATSEWVGNQ 77
Cdd:PLN02568 4 KKPRIVIIGAGMAGLTAANKLytssaANDMFELTVVEGGDRIGGR--INTSEFGGER 58
|
|
| PRK12771 |
PRK12771 |
putative glutamate synthase (NADPH) small subunit; Provisional |
32-64 |
2.04e-07 |
|
putative glutamate synthase (NADPH) small subunit; Provisional
Pssm-ID: 237198 [Multi-domain] Cd Length: 564 Bit Score: 53.34 E-value: 2.04e-07
10 20 30
....*....|....*....|....*....|...
gi 489209963 32 VVGAGLAGLSAAYELQKDGWQVTVLEARPQVGG 64
Cdd:PRK12771 142 VIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGG 174
|
|
| mnmC |
PRK01747 |
bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent ... |
30-67 |
3.00e-07 |
|
bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC;
Pssm-ID: 234978 [Multi-domain] Cd Length: 662 Bit Score: 52.93 E-value: 3.00e-07
10 20 30
....*....|....*....|....*....|....*....
gi 489209963 30 AIVVGAGLAGLSAAYELQKDGWQVTVLEARPQVG-GRSG 67
Cdd:PRK01747 263 AAIIGGGIAGAALALALARRGWQVTLYEADEAPAqGASG 301
|
|
| PRK11749 |
PRK11749 |
dihydropyrimidine dehydrogenase subunit A; Provisional |
32-64 |
3.12e-07 |
|
dihydropyrimidine dehydrogenase subunit A; Provisional
Pssm-ID: 236967 [Multi-domain] Cd Length: 457 Bit Score: 52.49 E-value: 3.12e-07
10 20 30
....*....|....*....|....*....|...
gi 489209963 32 VVGAGLAGLSAAYELQKDGWQVTVLEARPQVGG 64
Cdd:PRK11749 145 VIGAGPAGLTAAHRLARKGYDVTIFEARDKAGG 177
|
|
| UbiH |
COG0654 |
2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme ... |
26-66 |
5.32e-07 |
|
2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme transport and metabolism, Energy production and conversion]; 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases is part of the Pathway/BioSystem: Ubiquinone biosynthesis
Pssm-ID: 440419 [Multi-domain] Cd Length: 326 Bit Score: 51.48 E-value: 5.32e-07
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 489209963 26 KQPTAIVVGAGLAGLSAAYELQKDGWQVTVLEARPQVGGRS 66
Cdd:COG0654 2 MRTDVLIVGGGPAGLALALALARAGIRVTVVERAPPPRPDG 42
|
|
| PRK11883 |
PRK11883 |
protoporphyrinogen oxidase; Reviewed |
28-65 |
1.75e-06 |
|
protoporphyrinogen oxidase; Reviewed
Pssm-ID: 237009 [Multi-domain] Cd Length: 451 Bit Score: 50.23 E-value: 1.75e-06
10 20 30 40
....*....|....*....|....*....|....*....|
gi 489209963 28 PTAIVVGAGLAGLSAAYELQKDG--WQVTVLEARPQVGGR 65
Cdd:PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGpdADITLLEASDRLGGK 40
|
|
| PTZ00306 |
PTZ00306 |
NADH-dependent fumarate reductase; Provisional |
31-71 |
1.95e-06 |
|
NADH-dependent fumarate reductase; Provisional
Pssm-ID: 140327 [Multi-domain] Cd Length: 1167 Bit Score: 50.55 E-value: 1.95e-06
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 489209963 31 IVVGAGLAGLSAAYELQKDGWQVTVLEARPQVGGRSGLATS 71
Cdd:PTZ00306 413 IVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNSAKATS 453
|
|
| PRK12814 |
PRK12814 |
putative NADPH-dependent glutamate synthase small subunit; Provisional |
32-64 |
4.24e-06 |
|
putative NADPH-dependent glutamate synthase small subunit; Provisional
Pssm-ID: 139246 [Multi-domain] Cd Length: 652 Bit Score: 49.34 E-value: 4.24e-06
10 20 30
....*....|....*....|....*....|...
gi 489209963 32 VVGAGLAGLSAAYELQKDGWQVTVLEARPQVGG 64
Cdd:PRK12814 198 IIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGG 230
|
|
| PRK13984 |
PRK13984 |
putative oxidoreductase; Provisional |
32-64 |
1.02e-05 |
|
putative oxidoreductase; Provisional
Pssm-ID: 172486 [Multi-domain] Cd Length: 604 Bit Score: 48.22 E-value: 1.02e-05
10 20 30
....*....|....*....|....*....|...
gi 489209963 32 VVGAGLAGLSAAYELQKDGWQVTVLEARPQVGG 64
Cdd:PRK13984 288 IVGSGPAGLSAAYFLATMGYEVTVYESLSKPGG 320
|
|
| HdrA |
COG1148 |
Heterodisulfide reductase, subunit A (polyferredoxin) [Energy production and conversion]; |
28-65 |
1.64e-05 |
|
Heterodisulfide reductase, subunit A (polyferredoxin) [Energy production and conversion];
Pssm-ID: 440762 [Multi-domain] Cd Length: 563 Bit Score: 47.55 E-value: 1.64e-05
10 20 30
....*....|....*....|....*....|....*...
gi 489209963 28 PTAIVVGAGLAGLSAAYELQKDGWQVTVLEARPQVGGR 65
Cdd:COG1148 141 KRALVIGGGIAGMTAALELAEQGYEVYLVEKEPELGGR 178
|
|
| gltD |
PRK12810 |
glutamate synthase subunit beta; Reviewed |
32-64 |
1.65e-05 |
|
glutamate synthase subunit beta; Reviewed
Pssm-ID: 237213 [Multi-domain] Cd Length: 471 Bit Score: 47.08 E-value: 1.65e-05
10 20 30
....*....|....*....|....*....|...
gi 489209963 32 VVGAGLAGLSAAYELQKDGWQVTVLEARPQVGG 64
Cdd:PRK12810 148 VVGSGPAGLAAADQLARAGHKVTVFERADRIGG 180
|
|
| SdhA |
COG1053 |
Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and ... |
31-69 |
1.76e-05 |
|
Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit is part of the Pathway/BioSystem: TCA cycle
Pssm-ID: 440673 [Multi-domain] Cd Length: 443 Bit Score: 47.14 E-value: 1.76e-05
10 20 30
....*....|....*....|....*....|....*....
gi 489209963 31 IVVGAGLAGLSAAYELQKDGWQVTVLEARPQVGGRSGLA 69
Cdd:COG1053 7 VVVGSGGAGLRAALEAAEAGLKVLVLEKVPPRGGHTAAA 45
|
|
| LhgO |
COG0579 |
L-2-hydroxyglutarate oxidase LhgO [Carbohydrate transport and metabolism]; |
31-270 |
2.90e-05 |
|
L-2-hydroxyglutarate oxidase LhgO [Carbohydrate transport and metabolism];
Pssm-ID: 440344 [Multi-domain] Cd Length: 418 Bit Score: 46.29 E-value: 2.90e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489209963 31 IVVGAGLAGLSAAYELQK-DGWQVTVLEARPQVG----GR------SGL--------ATSEWVGNQKvqptLNAYLDTFK 91
Cdd:COG0579 8 VIIGAGIVGLALARELSRyEDLKVLVLEKEDDVAqessGNnsgvihAGLyytpgslkARLCVEGNEL----FYELCRELG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489209963 92 LKpvpapdFVRTPSYLidglyysssdLALKQPNVAADLKRFE----STLDDLsasisdplnpassntlfaldqmnaaRWL 167
Cdd:COG0579 84 IP------FKRCGKLV----------VATGEEEVAFLEKLYErgkaNGVPGL-------------------------EIL 122
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489209963 168 DKlnlsptarllvnQRIRSRydEPsrlsllYLAQQGRAyrgvddrdlrAARLPGGSQV----LAEAFVKQIK----TIKT 239
Cdd:COG0579 123 DR------------EELREL--EP------LLSDEGVA----------ALYSPSTGIVdpgaLTRALAENAEangvELLL 172
|
250 260 270
....*....|....*....|....*....|.
gi 489209963 240 KSKVSSIVQAKDGVAVKAGSETYKADYVVLA 270
Cdd:COG0579 173 NTEVTGIEREGDGWEVTTNGGTIRARFVINA 203
|
|
| FAD_binding_2 |
pfam00890 |
FAD binding domain; This family includes members that bind FAD. This family includes the ... |
30-69 |
3.18e-05 |
|
FAD binding domain; This family includes members that bind FAD. This family includes the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase.
Pssm-ID: 395718 [Multi-domain] Cd Length: 398 Bit Score: 46.13 E-value: 3.18e-05
10 20 30 40
....*....|....*....|....*....|....*....|
gi 489209963 30 AIVVGAGLAGLSAAYELQKDGWQVTVLEARPQVGGRSGLA 69
Cdd:pfam00890 2 VLVIGGGLAGLAAALAAAEAGLKVAVVEKGQPFGGATAWS 41
|
|
| Ppro0129 |
COG2907 |
Predicted flavin-containing amine oxidase [General function prediction only]; |
32-64 |
4.83e-05 |
|
Predicted flavin-containing amine oxidase [General function prediction only];
Pssm-ID: 442151 [Multi-domain] Cd Length: 423 Bit Score: 45.49 E-value: 4.83e-05
10 20 30
....*....|....*....|....*....|...
gi 489209963 32 VVGAGLAGLSAAYELQKDgWQVTVLEARPQVGG 64
Cdd:COG2907 8 VIGSGISGLTAAWLLSRR-HDVTLFEANDRLGG 39
|
|
| PRK12834 |
PRK12834 |
putative FAD-binding dehydrogenase; Reviewed |
27-64 |
7.14e-05 |
|
putative FAD-binding dehydrogenase; Reviewed
Pssm-ID: 183782 [Multi-domain] Cd Length: 549 Bit Score: 45.27 E-value: 7.14e-05
10 20 30 40
....*....|....*....|....*....|....*....|
gi 489209963 27 QPTAIVVGAGLAGLSAAYELQKDGWQVTVL--EARPQVGG 64
Cdd:PRK12834 4 DADVIVVGAGLAGLVAAAELADAGKRVLLLdqENEANLGG 43
|
|
| proto_IX_ox |
TIGR00562 |
protoporphyrinogen oxidase; This enzyme oxidizes protoporphyrinogen IX to protoporphyrin IX, a ... |
31-298 |
8.53e-05 |
|
protoporphyrinogen oxidase; This enzyme oxidizes protoporphyrinogen IX to protoporphyrin IX, a precursor of heme and chlorophyll. Bacillus subtilis HemY also has coproporphyrinogen III to coproporphyrin III oxidase activity in a heterologous expression system, although the role for this activity in vivo is unclear. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end. [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]
Pssm-ID: 213540 [Multi-domain] Cd Length: 462 Bit Score: 44.83 E-value: 8.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489209963 31 IVVGAGLAGLSAAYELQKD----GWQVTVLEARPQVGG------RSGLATSEwvGNQKVQPTLNAYLDTFK---LKPVPA 97
Cdd:TIGR00562 6 VIIGGGISGLCAAYYLEKEipelPVELTLVEASDRVGGkiqtvkEDGYLIER--GPDSFLERKKSAPDLVKdlgLEHVLV 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489209963 98 PDfVRTPSYLIDglyysSSDLALKQPNVAADLKRFestlddlsasisdPLNPASSNTLFALDQMNAArwldklnlSPTAR 177
Cdd:TIGR00562 84 SD-ATGQRYVLV-----NRGKLMPVPTKIAPFVKT-------------GLFSLGGKLRAGMDFIRPA--------SPGKD 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489209963 178 LLVNQRIRSRY------------------DEPSRLSL------LYLAQQG------------RAYRGVDDRDLRAAR--- 218
Cdd:TIGR00562 137 ESVEEFVRRRFgdevvenliepllsgiyaGDPSKLSLkstfpkFYQTEQKhgslilgmkktrNLPQGSGLQLTAKKQgqd 216
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489209963 219 ---LPGGSQVLAEAFVKQIKTIK--TKSKVSSIVQAKDGVAVKAGS-ETYKADYVVLAVPLKALGqiQMTPSLSGTQMSA 292
Cdd:TIGR00562 217 fqtLATGLETLPEEIEKRLKLTKvyKGTKVTKLSHRGSNYTLELDNgVTVETDSVVVTAPHKAAA--GLLSELSNSASSH 294
|
....*.
gi 489209963 293 LKGTNY 298
Cdd:TIGR00562 295 LDKIHS 300
|
|
| PLN02487 |
PLN02487 |
zeta-carotene desaturase |
32-67 |
9.64e-05 |
|
zeta-carotene desaturase
Pssm-ID: 215268 [Multi-domain] Cd Length: 569 Bit Score: 44.79 E-value: 9.64e-05
10 20 30
....*....|....*....|....*....|....*.
gi 489209963 32 VVGAGLAGLSAAYELQKDGWQVTVLEARPQVGGRSG 67
Cdd:PLN02487 80 IIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVG 115
|
|
| COG3573 |
COG3573 |
Predicted oxidoreductase [General function prediction only]; |
24-64 |
9.97e-05 |
|
Predicted oxidoreductase [General function prediction only];
Pssm-ID: 442794 [Multi-domain] Cd Length: 551 Bit Score: 44.78 E-value: 9.97e-05
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 489209963 24 KDKQPTAIVVGAGLAGLSAAYELQKDGWQVTVL--EARPQVGG 64
Cdd:COG3573 2 AAMDADVIVVGAGLAGLVAAAELADAGRRVLLLdqEPEANLGG 44
|
|
| PLN02576 |
PLN02576 |
protoporphyrinogen oxidase |
18-64 |
1.88e-04 |
|
protoporphyrinogen oxidase
Pssm-ID: 215314 [Multi-domain] Cd Length: 496 Bit Score: 43.85 E-value: 1.88e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 489209963 18 SAVALGKDkqptAIVVGAGLAGLSAAYELQ-KDGWQVTVLEARPQVGG 64
Cdd:PLN02576 7 SAAASSKD----VAVVGAGVSGLAAAYALAsKHGVNVLVTEARDRVGG 50
|
|
| TrxB |
COG0492 |
Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]; |
31-76 |
7.36e-04 |
|
Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440258 [Multi-domain] Cd Length: 305 Bit Score: 41.64 E-value: 7.36e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 489209963 31 IVVGAGLAGLSAAYELQKDGWQVTVLEaRPQVGGRsgLATSEWVGN 76
Cdd:COG0492 4 VIIGAGPAGLTAAIYAARAGLKTLVIE-GGEPGGQ--LATTKEIEN 46
|
|
| PRK08163 |
PRK08163 |
3-hydroxybenzoate 6-monooxygenase; |
25-63 |
7.37e-04 |
|
3-hydroxybenzoate 6-monooxygenase;
Pssm-ID: 181262 [Multi-domain] Cd Length: 396 Bit Score: 41.95 E-value: 7.37e-04
10 20 30
....*....|....*....|....*....|....*....
gi 489209963 25 DKQPTAIVVGAGLAGLSAAYELQKDGWQVTVLEARPQVG 63
Cdd:PRK08163 2 TKVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIG 40
|
|
| Thi4 |
pfam01946 |
Thi4 family; This family includes Swiss:P32318 a putative thiamine biosynthetic enzyme. |
31-68 |
9.08e-04 |
|
Thi4 family; This family includes Swiss:P32318 a putative thiamine biosynthetic enzyme.
Pssm-ID: 460393 Cd Length: 232 Bit Score: 40.92 E-value: 9.08e-04
10 20 30
....*....|....*....|....*....|....*....
gi 489209963 31 IVVGAGLAGLSAAYEL-QKDGWQVTVLEARPQVGGRSGL 68
Cdd:pfam01946 21 VIVGAGSSGLTAAYYLaKNRGLKVAIIERSVSPGGGAWL 59
|
|
| PRK06753 |
PRK06753 |
hypothetical protein; Provisional |
31-69 |
1.31e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 168661 [Multi-domain] Cd Length: 373 Bit Score: 40.83 E-value: 1.31e-03
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 489209963 31 IVVGAGLAGLSAAYELQKDGWQVTVLEARP---QVGGRSGLA 69
Cdd:PRK06753 4 AIIGAGIGGLTAAALLQEQGHEVKVFEKNEsvkEVGAGIGIG 45
|
|
| PRK12409 |
PRK12409 |
D-amino acid dehydrogenase small subunit; Provisional |
28-57 |
1.44e-03 |
|
D-amino acid dehydrogenase small subunit; Provisional
Pssm-ID: 237093 [Multi-domain] Cd Length: 410 Bit Score: 40.78 E-value: 1.44e-03
10 20 30
....*....|....*....|....*....|
gi 489209963 28 PTAIVVGAGLAGLSAAYELQKDGWQVTVLE 57
Cdd:PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFD 31
|
|
| PRK12831 |
PRK12831 |
putative oxidoreductase; Provisional |
32-64 |
1.51e-03 |
|
putative oxidoreductase; Provisional
Pssm-ID: 183780 [Multi-domain] Cd Length: 464 Bit Score: 41.16 E-value: 1.51e-03
10 20 30
....*....|....*....|....*....|...
gi 489209963 32 VVGAGLAGLSAAYELQKDGWQVTVLEARPQVGG 64
Cdd:PRK12831 145 VIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGG 177
|
|
| PLN02172 |
PLN02172 |
flavin-containing monooxygenase FMO GS-OX |
32-64 |
1.60e-03 |
|
flavin-containing monooxygenase FMO GS-OX
Pssm-ID: 215116 [Multi-domain] Cd Length: 461 Bit Score: 41.00 E-value: 1.60e-03
10 20 30
....*....|....*....|....*....|...
gi 489209963 32 VVGAGLAGLSAAYELQKDGWQVTVLEARPQVGG 64
Cdd:PLN02172 15 VIGAGAAGLVAARELRREGHTVVVFEREKQVGG 47
|
|
| PRK05335 |
PRK05335 |
tRNA (uracil-5-)-methyltransferase Gid; Reviewed |
27-61 |
1.80e-03 |
|
tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Pssm-ID: 235416 Cd Length: 436 Bit Score: 40.51 E-value: 1.80e-03
10 20 30
....*....|....*....|....*....|....*
gi 489209963 27 QPTAIVVGAGLAGLSAAYELQKDGWQVTVLEARPQ 61
Cdd:PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPV 36
|
|
| FAD_oxidored |
pfam12831 |
FAD dependent oxidoreductase; This family of proteins contains FAD dependent oxidoreductases ... |
31-75 |
1.92e-03 |
|
FAD dependent oxidoreductase; This family of proteins contains FAD dependent oxidoreductases and related proteins.
Pssm-ID: 432816 [Multi-domain] Cd Length: 420 Bit Score: 40.67 E-value: 1.92e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 489209963 31 IVVGAGLAGLSAAYELQKDGWQVTVLEARPQVGgrsGLATSEWVG 75
Cdd:pfam12831 3 VVVGGGPAGVAAAIAAARAGAKVLLVERRGFLG---GMLTSGLVG 44
|
|
| PRK06475 |
PRK06475 |
FAD-binding protein; |
31-62 |
1.93e-03 |
|
FAD-binding protein;
Pssm-ID: 180582 [Multi-domain] Cd Length: 400 Bit Score: 40.58 E-value: 1.93e-03
10 20 30
....*....|....*....|....*....|..
gi 489209963 31 IVVGAGLAGLSAAYELQKDGWQVTVLEARPQV 62
Cdd:PRK06475 6 LIAGAGVAGLSAALELAARGWAVTIIEKAQEL 37
|
|
| FixC |
COG0644 |
Dehydrogenase (flavoprotein) [Energy production and conversion]; |
35-65 |
2.13e-03 |
|
Dehydrogenase (flavoprotein) [Energy production and conversion];
Pssm-ID: 440409 [Multi-domain] Cd Length: 281 Bit Score: 39.95 E-value: 2.13e-03
10 20 30
....*....|....*....|....*....|.
gi 489209963 35 AGLAGLSAAYELQKDGWQVTVLEARPQVGGR 65
Cdd:COG0644 1 AGPAGSAAARRLARAGLSVLLLEKGSFPGDK 31
|
|
| PRK00711 |
PRK00711 |
D-amino acid dehydrogenase; |
31-71 |
2.57e-03 |
|
D-amino acid dehydrogenase;
Pssm-ID: 234819 [Multi-domain] Cd Length: 416 Bit Score: 40.17 E-value: 2.57e-03
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 489209963 31 IVVGAGLAGLSAAYELQKDGWQVTVLEARPqvggRSGLATS 71
Cdd:PRK00711 4 VVLGSGVIGVTSAWYLAQAGHEVTVIDRQP----GPALETS 40
|
|
| PRK06481 |
PRK06481 |
flavocytochrome c; |
31-71 |
2.68e-03 |
|
flavocytochrome c;
Pssm-ID: 180584 [Multi-domain] Cd Length: 506 Bit Score: 40.20 E-value: 2.68e-03
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 489209963 31 IVVGAGLAGLSAAYELQKDGWQVTVLEARPQVGGRSGLATS 71
Cdd:PRK06481 65 VIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTMKASS 105
|
|
| NadB |
COG0029 |
Aspartate oxidase [Coenzyme transport and metabolism]; Aspartate oxidase is part of the ... |
31-56 |
2.69e-03 |
|
Aspartate oxidase [Coenzyme transport and metabolism]; Aspartate oxidase is part of the Pathway/BioSystem: NAD biosynthesis
Pssm-ID: 439800 [Multi-domain] Cd Length: 521 Bit Score: 40.09 E-value: 2.69e-03
10 20
....*....|....*....|....*.
gi 489209963 31 IVVGAGLAGLSAAYELQKDGwQVTVL 56
Cdd:COG0029 8 LVIGSGIAGLSAALKLAERG-RVTLL 32
|
|
| PRK07236 |
PRK07236 |
hypothetical protein; Provisional |
26-60 |
2.82e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 235980 [Multi-domain] Cd Length: 386 Bit Score: 39.90 E-value: 2.82e-03
10 20 30
....*....|....*....|....*....|....*
gi 489209963 26 KQPTAIVVGAGLAGLSAAYELQKDGWQVTVLEARP 60
Cdd:PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSP 39
|
|
| PRK12778 |
PRK12778 |
bifunctional dihydroorotate dehydrogenase B NAD binding subunit/NADPH-dependent glutamate ... |
32-64 |
2.94e-03 |
|
bifunctional dihydroorotate dehydrogenase B NAD binding subunit/NADPH-dependent glutamate synthase;
Pssm-ID: 237200 [Multi-domain] Cd Length: 752 Bit Score: 40.11 E-value: 2.94e-03
10 20 30
....*....|....*....|....*....|...
gi 489209963 32 VVGAGLAGLSAAYELQKDGWQVTVLEARPQVGG 64
Cdd:PRK12778 436 VIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGG 468
|
|
| YhiN |
COG2081 |
Predicted flavoprotein YhiN [General function prediction only]; |
31-63 |
3.66e-03 |
|
Predicted flavoprotein YhiN [General function prediction only];
Pssm-ID: 441684 [Multi-domain] Cd Length: 402 Bit Score: 39.65 E-value: 3.66e-03
10 20 30
....*....|....*....|....*....|...
gi 489209963 31 IVVGAGLAGLSAAYELQKDGWQVTVLEARPQVG 63
Cdd:COG2081 1 IVIGAGAAGLMAAITAAERGARVLLLEKNPKVG 33
|
|
| Pyr_redox |
pfam00070 |
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II ... |
30-74 |
4.44e-03 |
|
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.
Pssm-ID: 425450 [Multi-domain] Cd Length: 80 Bit Score: 36.03 E-value: 4.44e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 489209963 30 AIVVGAGLAGLSAAYELQKDGWQVTVLEARPQVGGRSGLATSEWV 74
Cdd:pfam00070 2 VVVVGGGYIGLELAGALARLGSKVTVVERRDRLLPGFDPEIAKIL 46
|
|
| PRK06847 |
PRK06847 |
hypothetical protein; Provisional |
30-61 |
4.84e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 235874 [Multi-domain] Cd Length: 375 Bit Score: 39.09 E-value: 4.84e-03
10 20 30
....*....|....*....|....*....|..
gi 489209963 30 AIVVGAGLAGLSAAYELQKDGWQVTVLEARPQ 61
Cdd:PRK06847 7 VLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE 38
|
|
| PRK12843 |
PRK12843 |
FAD-dependent oxidoreductase; |
31-85 |
4.84e-03 |
|
FAD-dependent oxidoreductase;
Pssm-ID: 237225 [Multi-domain] Cd Length: 578 Bit Score: 39.33 E-value: 4.84e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 489209963 31 IVVGAGLAGLSAAYELQKDGWQVTVLEARPQVGGRSGL-ATSEWVGNQKVQPTLNA 85
Cdd:PRK12843 20 IVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTTATsAGTTWIPGTRHGLAVGP 75
|
|
| TrmFO |
COG1206 |
Folate-dependent tRNA-U54 methylase TrmFO/GidA [Translation, ribosomal structure and ... |
27-62 |
5.14e-03 |
|
Folate-dependent tRNA-U54 methylase TrmFO/GidA [Translation, ribosomal structure and biogenesis]; Folate-dependent tRNA-U54 methylase TrmFO/GidA is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 440819 Cd Length: 436 Bit Score: 39.27 E-value: 5.14e-03
10 20 30
....*....|....*....|....*....|....*.
gi 489209963 27 QPTAIVVGAGLAGLSAAYELQKDGWQVTVLEARPQV 62
Cdd:COG1206 1 MKPVTVIGGGLAGSEAAWQLAERGVPVRLYEMRPVK 36
|
|
| PRK06416 |
PRK06416 |
dihydrolipoamide dehydrogenase; Reviewed |
223-271 |
6.98e-03 |
|
dihydrolipoamide dehydrogenase; Reviewed
Pssm-ID: 235798 [Multi-domain] Cd Length: 462 Bit Score: 38.97 E-value: 6.98e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 489209963 223 SQVLAEAFVKQIKTIKTKSKVSSIVQAKDGV----AVKAGSETYKADYVVLAV 271
Cdd:PRK06416 216 SKLAERALKKRGIKIKTGAKAKKVEQTDDGVtvtlEDGGKEETLEADYVLVAV 268
|
|
| PLN02661 |
PLN02661 |
Putative thiazole synthesis |
31-77 |
7.29e-03 |
|
Putative thiazole synthesis
Pssm-ID: 178267 Cd Length: 357 Bit Score: 38.65 E-value: 7.29e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 489209963 31 IVVGAGLAGLSAAYELQKD-GWQVTVLEARPQVGGrsglatSEWVGNQ 77
Cdd:PLN02661 96 VIVGAGSAGLSCAYELSKNpNVKVAIIEQSVSPGG------GAWLGGQ 137
|
|
| NirB |
COG1251 |
NAD(P)H-nitrite reductase, large subunit [Energy production and conversion]; |
30-65 |
7.67e-03 |
|
NAD(P)H-nitrite reductase, large subunit [Energy production and conversion];
Pssm-ID: 440863 [Multi-domain] Cd Length: 402 Bit Score: 38.58 E-value: 7.67e-03
10 20 30
....*....|....*....|....*....|....*.
gi 489209963 30 AIVVGAGLAGLSAAYELQKDGWQVTVLEARPQVGGR 65
Cdd:COG1251 145 VVVIGGGLIGLEAAAALRKRGLEVTVVERAPRLLPR 180
|
|
| PRK12842 |
PRK12842 |
putative succinate dehydrogenase; Reviewed |
31-69 |
8.15e-03 |
|
putative succinate dehydrogenase; Reviewed
Pssm-ID: 237224 [Multi-domain] Cd Length: 574 Bit Score: 38.91 E-value: 8.15e-03
10 20 30
....*....|....*....|....*....|....*....
gi 489209963 31 IVVGAGLAGLSAAYELQKDGWQVTVLEARPQVGGRSGLA 69
Cdd:PRK12842 13 LVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGTTAFS 51
|
|
| PRK06134 |
PRK06134 |
putative FAD-binding dehydrogenase; Reviewed |
31-75 |
8.16e-03 |
|
putative FAD-binding dehydrogenase; Reviewed
Pssm-ID: 180419 [Multi-domain] Cd Length: 581 Bit Score: 38.93 E-value: 8.16e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 489209963 31 IVVGAGLAGLSAAYELQKDGWQVTVLEARPQVGGrsglaTSEWVG 75
Cdd:PRK06134 16 LVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGG-----TTAWSG 55
|
|
| PRK09126 |
PRK09126 |
FAD-dependent hydroxylase; |
31-65 |
8.80e-03 |
|
FAD-dependent hydroxylase;
Pssm-ID: 236385 [Multi-domain] Cd Length: 392 Bit Score: 38.38 E-value: 8.80e-03
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 489209963 31 IVVGAGLAGLSAAYELQKDGWQVTVLE-------ARPQVGGR 65
Cdd:PRK09126 7 VVVGAGPAGLSFARSLAGSGLKVTLIErqplaalADPAFDGR 48
|
|
| |
