NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|489175531|ref|WP_003085057|]
View 

MULTISPECIES: 30S ribosomal protein S21 [Pseudomonadaceae]

Protein Classification

30S ribosomal protein S21( domain architecture ID 10002851)

30S ribosomal protein S21 is a component of the small ribosomal subunit 30S

Gene Ontology:  GO:0006412|GO:0003735
PubMed:  24524803

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
RpsU COG0828
Ribosomal protein S21 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S21 ...
 1-59 1.31e-15

Ribosomal protein S21 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S21 is part of the Pathway/BioSystem: Ribosome 30S subunit


:

Pssm-ID: 440590  Cd Length: 62  Bit Score: 63.59  E-value: 1.31e-15
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*....
gi 489175531  1 MPAVKVKENEPFDVALRRFKRSCEKAGVLAEVRSREFYEKPTAERKRKAAAAVKRHAKK 59
Cdd:COG0828   1 MIEVKVRENESIDSALRRFKRKVEKEGILRELRRREHYEKPSEKRKRKKAAARRRQRKR 59
 
Name Accession Description Interval E-value
RpsU COG0828
Ribosomal protein S21 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S21 ...
 1-59 1.31e-15

Ribosomal protein S21 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S21 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 440590  Cd Length: 62  Bit Score: 63.59  E-value: 1.31e-15
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*....
gi 489175531  1 MPAVKVKENEPFDVALRRFKRSCEKAGVLAEVRSREFYEKPTAERKRKAAAAVKRHAKK 59
Cdd:COG0828   1 MIEVKVRENESIDSALRRFKRKVEKEGILRELRRREHYEKPSEKRKRKKAAARRRQRKR 59
S21p TIGR00030
ribosomal protein S21; This model describes bacterial ribosomal protein S21 and most ...
 2-59 1.78e-10

ribosomal protein S21; This model describes bacterial ribosomal protein S21 and most mitochondrial and chloroplast equivalents. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 129141  Cd Length: 58  Bit Score: 50.73  E-value: 1.78e-10
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 489175531   2 PAVKVKENEPFDVALRRFKRSCEKAGVLAEVRSREFYEKPTAERKRKAAAAVKRHAKK 59
Cdd:TIGR00030  1 PTVKVKEGESIDSALRRFKRKLEKEGILRELKKRRYYEKPSERRRRKEKAAAKRIRKK 58
Ribosomal_S21 pfam01165
Ribosomal protein S21;
4-42 2.16e-10

Ribosomal protein S21;


Pssm-ID: 460092  Cd Length: 51  Bit Score: 50.15  E-value: 2.16e-10
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 489175531   4 VKVKENEPFDVALRRFKRSCEKAGVLAEVRSREFYEKPT 42
Cdd:pfam01165  2 VDVKEGENIERALRRLKRKVERNGILRELRRRRFYEKPS 40
 
Name Accession Description Interval E-value
RpsU COG0828
Ribosomal protein S21 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S21 ...
 1-59 1.31e-15

Ribosomal protein S21 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S21 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 440590  Cd Length: 62  Bit Score: 63.59  E-value: 1.31e-15
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*....
gi 489175531  1 MPAVKVKENEPFDVALRRFKRSCEKAGVLAEVRSREFYEKPTAERKRKAAAAVKRHAKK 59
Cdd:COG0828   1 MIEVKVRENESIDSALRRFKRKVEKEGILRELRRREHYEKPSEKRKRKKAAARRRQRKR 59
S21p TIGR00030
ribosomal protein S21; This model describes bacterial ribosomal protein S21 and most ...
 2-59 1.78e-10

ribosomal protein S21; This model describes bacterial ribosomal protein S21 and most mitochondrial and chloroplast equivalents. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 129141  Cd Length: 58  Bit Score: 50.73  E-value: 1.78e-10
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 489175531   2 PAVKVKENEPFDVALRRFKRSCEKAGVLAEVRSREFYEKPTAERKRKAAAAVKRHAKK 59
Cdd:TIGR00030  1 PTVKVKEGESIDSALRRFKRKLEKEGILRELKKRRYYEKPSERRRRKEKAAAKRIRKK 58
Ribosomal_S21 pfam01165
Ribosomal protein S21;
4-42 2.16e-10

Ribosomal protein S21;


Pssm-ID: 460092  Cd Length: 51  Bit Score: 50.15  E-value: 2.16e-10
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 489175531   4 VKVKENEPFDVALRRFKRSCEKAGVLAEVRSREFYEKPT 42
Cdd:pfam01165  2 VDVKEGENIERALRRLKRKVERNGILRELRRRRFYEKPS 40
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH